Citrus Sinensis ID: 035836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MCDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPTEDDSTEDD
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccccccccccccccEEEEEcccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccEEEcccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEcccccccHHHHccccccccccEEcccccccccccccccccccccEEEccccHHHHHHHcccccccccccccccEEEEccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccHcccccccccccccEEEEcccccHcccccHccccHcccccccccccccEEEccccccHccccccccccHHHHHccccccccccEEEEEcccccHHHccHHccccccccEEEEcccccHccccccccccccccEEEEcccccHccccccccccccccEEEEcccHHHHccccHccccccccEEEEcccccccccccccccccccEEEEcccHHHHcHHHHccccccccccccEEEEcccccHcccccHHHHcccHHccccccccEEEEcccccHHHccHHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHcccccccccccccccccEEEEcccEEEEcccccccccccc
Coil and Loop (DISEMBL)
mcdtnssleILEIWVCHSLTyiagvqlppslkqlrisdcdnirTLTVEEGiqsssssrrYTSYLLEELRIcscrsltcifsknelpatleslevgnlppslRSLYVSHCSKLESIAErldnntsletidisnceslkilpsGLHNLRQLQKIEIWecenlvsftegglpcakltrldiydceRLEAlpkglhnltslqeltigkgvelpsleedglptnlhsleidGNMEIWKSTIEWGRGFHRFSSLRRLAisgcdddmvsfpledkrlgtalplpasltslwiedfpnlerlsssivdlqnltilqlidcpklkyfpekglpssllelwiwdcplieekcrkdggqywnllthipyvsidykwvfdddpteddstedd
Flexible Loop (DISEMBL)
mcdtnsslEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTveegiqsssssrrYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIaerldnntsletiDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPTEDDSTEDD
Low Complexity Region (SEG)
MCDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQsssssrrytsyLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFdddpteddstedd
Disordered region (IsUnstruct)
*******LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEE*********RYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS************************TALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD************
Disordered Region (DISOPRED)
***TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGI*SSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKW***************
Disordered Region (DISEMBL)
MCDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEE*********RYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDD**********
Disordered Region (DISPRO)
****NSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPT********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPTEDDSTEDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.826	0.220	0.324	2e-25
Q7XBQ9	970	Disease resistance protei	N/A	no	0.476	0.186	0.307	2e-08
Q9FKZ1	809	Probable disease resistan	no	no	0.460	0.216	0.274	4e-08
Q7XA39	988	Putative disease resistan	N/A	no	0.434	0.167	0.300	6e-08
Q9LZ25	811	Probable disease resistan	no	no	0.221	0.103	0.288	1e-07
Q9FKZ0	815	Probable disease resistan	no	no	0.376	0.175	0.280	2e-07
Q9FW44	787	Disease resistance protei	no	no	0.357	0.172	0.292	4e-07
Q9LVT1	623	Putative disease resistan	no	no	0.226	0.138	0.263	6e-07
Q7XA40	992	Putative disease resistan	N/A	no	0.510	0.195	0.285	8e-07
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.586	0.171	0.292	3e-06

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 180/357 (50%), Gaps = 43/357 (12%)

Query: 25   VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNE 84
            ++LP +L+ L I  CD + +L   E +  S  +       L EL I +C SL   F  + 
Sbjct: 1087 MELPQNLQSLHIDSCDGLTSLP--ENLTESYPN-------LHELLIIACHSLES-FPGSH 1136

Query: 85   LPATLESLEVGN---------LPPS-----LRSLYV-SHCSKLESIAERLDNNTSLETID 129
             P TL++L + +         L P+     L  L++ S CS L +    L     L ++ 
Sbjct: 1137 PPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFP--LSLFPKLRSLS 1194

Query: 130  ISNCESLKILP--SGLHNLR-QLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEA 186
            I +CES K     +GL + R  L+ +EI +C NL +F +GGLP  KL+ + + +C++L+A
Sbjct: 1195 IRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQA 1254

Query: 187  LPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS 246
            LP+ L  LTSL  L I K  E+ ++   G P+NL +L I    +     IEW  G     
Sbjct: 1255 LPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCI-SLCDKLTPRIEW--GLRDLE 1311

Query: 247  SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLT 305
            +LR L I G ++D+ SFP E         LP S+ SL I  F NL+ L+     D + + 
Sbjct: 1312 NLRNLEIDGGNEDIESFPEEGL-------LPKSVFSLRISRFENLKTLNRKGFHDTKAIE 1364

Query: 306  ILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSID 362
             +++  C KL+   ++ LP  L  L I  C L+ E   +   +++ +L +IPYV ID
Sbjct: 1365 TMEISGCDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEID 1419

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 24/205 (11%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88
           PSL++L I D  +++ L  +EG +           +LEE+ I  C  LT       L + 
Sbjct: 788 PSLRKLDIWDFGSLKGLLKKEGEEQFP--------VLEEMIIHECPFLT-------LSSN 832

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ 148
           L +L       SLR  Y    +      E   N  +L+ + IS C +LK LP+ L +L  
Sbjct: 833 LRAL------TSLRICYNKVATSFPE--EMFKNLANLKYLTISRCNNLKELPTSLASLNA 884

Query: 149 LQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVE 207
           L+ ++I  C  L S  E GL   + LT L +  C  L+ LP+GL +LT+L  L I    +
Sbjct: 885 LKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQ 944

Query: 208 LPSLEEDGLPTNLHSLEIDGNMEIW 232
           L    E G+  + H +    N+ I+
Sbjct: 945 LIKRCEKGIGEDWHKISHIPNVNIY 969

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 67  ELRICSCRSLTCIF-SKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSL 125
           +L++ S + L+ +  S  E+    E + V N    L+ + + +C  L+ +   +    SL
Sbjct: 616 QLQLSSLKKLSLVMCSFGEVFYDTEDIVVSNALSKLQEIDIDYCYDLDELPYWISEIVSL 675

Query: 126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLE 185
           +T+ I+NC  L  LP  + NL +L+ + +    NL    E     + L  LDI  C  L 
Sbjct: 676 KTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMNLSELPEATEGLSNLRFLDISHCLGLR 735

Query: 186 ALPKGLHNLTSLQELTIGK--GVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH 243
            LP+ +  L +L+++++ K  G ELP        TNL +LE+  + E   + + W R   
Sbjct: 736 KLPQEIGKLQNLKKISMRKCSGCELPE-----SVTNLENLEVKCDEE---TGLLWERLKP 787

Query: 244 RFSSLR 249
           +  +LR
Sbjct: 788 KMRNLR 793

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 18/183 (9%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCR-----SLTCIFSKN 83
           PSLK+LRI    +++ L  EEG +           +LEE+ I  C      +L+ +  K 
Sbjct: 785 PSLKKLRIWFFRSLKGLMKEEGEEKFP--------MLEEMAILYCPLFVFPTLSSV-KKL 835

Query: 84  ELPATLESLEVGNLP--PSLRSLYVSHCSKLESIAERLDNN-TSLETIDISNCESLKILP 140
           E+     +  + ++    +L SL +    +  S+ E +  + T+LE +   + ++LK LP
Sbjct: 836 EVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLP 895

Query: 141 SGLHNLRQLQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCERLEALPKGLHNLTSLQE 199
           + L +L  L++++I  C++L SF E GL     LT+L +  C+ L+ LP+GL +LT+L  
Sbjct: 896 TSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALTN 955

Query: 200 LTI 202
           L +
Sbjct: 956 LGV 958

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%)

Query: 76  LTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCES 135
           L+ IF K         L++  + P L  L + HC  L  +   +   TSL +I I+NC  
Sbjct: 628 LSLIFCKINTSLDQTELDIAQIFPKLSDLTIDHCDDLLELPSTICGITSLNSISITNCPR 687

Query: 136 LKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLT 195
           +K LP  L  L+ LQ + ++ C  L S         +L  +DI  C  L +LP+ +  + 
Sbjct: 688 IKELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPEKIGKVK 747

Query: 196 SLQEL 200
           +L+++
Sbjct: 748 TLEKI 752

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 67  ELRICSCRSLTCIF-SKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSL 125
           +L++ S + L+    S  E+    E ++V     +L+ + + +C  L+ +   +    SL
Sbjct: 622 QLQLGSLKKLSFFMCSFGEVFYDTEDIDVSKALSNLQEIDIDYCYDLDELPYWIPEVVSL 681

Query: 126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLE 185
           +T+ I+NC  L  LP  + NL +L+ + +  C NL    E     + L  LDI  C  L 
Sbjct: 682 KTLSITNCNKLSQLPEAIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLR 741

Query: 186 ALPKGLHNLTSLQELTIGK--GVELP 209
            LP+ +  L  L+ +++ K  G ELP
Sbjct: 742 KLPQEIGKLQKLENISMRKCSGCELP 767

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 11/147 (7%)

Query: 79  IFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI 138
           IF K +      S ++  + PSL  L + HC  L  + + +   TSL ++ I+NC  +  
Sbjct: 608 IFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLEL-KSIFGITSLNSLSITNCPRILE 666

Query: 139 LPSGLHNLRQLQKIEIWECENLVSFTEG--GLPCAKLTRLDIYDCERLEALPKGLHNLTS 196
           LP  L N++ L+++ ++ C  L+S       LPC K   +DI  C  L +LP+    L S
Sbjct: 667 LPKNLSNVQSLERLRLYACPELISLPVEVCELPCLKY--VDISQCVSLVSLPEKFGKLGS 724

Query: 197 LQELTIGKGVELPSLEEDGLPTNLHSL 223
           L+++ + +   L      GLP+++ +L
Sbjct: 725 LEKIDMRECSLL------GLPSSVAAL 745

Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 58/110 (52%)

Query: 91  SLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQ 150
           ++++  + P L  + + +C  L  +   +   TSL +I I+NC ++K LP  +  L+ LQ
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514

Query: 151 KIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL 200
            + ++ C  L S         +L  +DI  C  L +LP+ + N+ +L+++
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKI 564

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 20/214 (9%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88
           PSL++L I    N++      G+Q    + ++   +LEE++I  C     +F        
Sbjct: 788 PSLRKLHIGGFCNLK------GLQRMKGAEQFP--VLEEMKISDCPMF--VFPTLSSVKK 837

Query: 89  LE---SLEVGNLPP-----SLRSLYVSHCSKLESIAERLDNN-TSLETIDISNCESLKIL 139
           LE     + G L       +L SL +     + S+ E +  N  +L  + +S  E+LK L
Sbjct: 838 LEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKEL 897

Query: 140 PSGLHNLRQLQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCERLEALPKGLHNLTSLQ 198
           P+ L +L  L+ ++I  C  L S  E GL   + LT L +  C  L+ LP+GL +LT+L 
Sbjct: 898 PTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLT 957

Query: 199 ELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIW 232
            L I    +L    E G+  + H +    N+ I+
Sbjct: 958 SLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIY 991

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 27/250 (10%)

Query: 100  SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECEN 159
            SL  + +S    L  I + L   T LE++ ++NC+SL  LPS + NL +L ++E+ EC  
Sbjct: 774  SLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTG 832

Query: 160  L-VSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPT 218
            L V  T+  L  + L  LD+  C  L + P    N+  L        +E  ++EE  +P+
Sbjct: 833  LEVLPTDVNL--SSLETLDLSGCSSLRSFPLISTNIVWLY-------LENTAIEE--IPS 881

Query: 219  NLHSLEIDGNMEIWKST-IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRL------G 271
             + +L     +E+ K T +E        SSL  L +SGC   + SFPL  + +       
Sbjct: 882  TIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGC-SSLRSFPLISESIKWLYLEN 940

Query: 272  TA------LPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPS 325
            TA      L    +L +L + +  +L  L ++I +LQ L   ++ +C  L+  P     S
Sbjct: 941  TAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNLS 1000

Query: 326  SLLELWIWDC 335
            SL+ L +  C
Sbjct: 1001 SLMILDLSGC 1010

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
356554923	1399	PREDICTED: putative disease resistance R	0.926	0.251	0.446	6e-67
224132254	552	predicted protein [Populus trichocarpa]	0.913	0.628	0.419	1e-55
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.952	0.254	0.395	6e-55
45826061	739	resistance protein [Quercus suber]	0.892	0.458	0.389	3e-48
400131587	1388	FB_MR5 [Malus x robusta]	0.823	0.225	0.383	4e-48
359495054	1347	PREDICTED: putative disease resistance R	0.878	0.247	0.387	3e-46
359487255	1336	PREDICTED: putative disease resistance p	0.847	0.241	0.359	2e-44
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.865	0.232	0.367	2e-44
147777746	1199	hypothetical protein VITISV_010202 [Viti	0.847	0.268	0.357	2e-44
359495085	1345	PREDICTED: putative disease resistance p	0.855	0.241	0.359	3e-44

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 172/385 (44%), Positives = 230/385 (59%), Gaps = 33/385 (8%)

Query: 8    LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSS------SRRYT 61
            LE L I  C S+ ++   QLP SLK L IS+C N+R L ++ G  +SSS      + ++ 
Sbjct: 1023 LERLYICHCDSIVFVTMDQLPHSLKSLEISNCKNLRCL-LDNGTCTSSSIIMHDDNVQHG 1081

Query: 62   SYL---LEELRICSCRSLTCIFSKNELPATLESLEV------------GNLPPSLRSLYV 106
            S +   LE + I  C SLTCI    ELP +++ L +            G LP S+  L +
Sbjct: 1082 STIISHLEYVYIGWCPSLTCISRSGELPESVKHLFIWNCSELSCLSMKGQLPKSIERLEI 1141

Query: 107  SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG 166
              C KLESIA RL  NTSLE+I I NCE+LK LP GLH L  L++I+I  C NLVSF E 
Sbjct: 1142 QSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEE 1201

Query: 167  GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEID 226
            GLP + L+ L I  CE+L ALP  ++NL SL+EL IG    +    E   P NL SL I+
Sbjct: 1202 GLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWIN 1261

Query: 227  GNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIE 286
             +    ++   W  G ++ S LR L I G +  M   PLE  +LGT   LP++LTSL ++
Sbjct: 1262 DH-NACEAMFNW--GLYKLSFLRDLTIIGGNLFM---PLE--KLGTM--LPSTLTSLTVQ 1311

Query: 287  DFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKD 345
             FP+LE LSS     L +L+ L + +CPKL   PEKGLPSSLLEL+I DCP ++E+CRKD
Sbjct: 1312 GFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKD 1371

Query: 346  GGQYWNLLTHIPYVSIDYKWVFDDD 370
             G+ W  +  +PYV ID K+++D D
Sbjct: 1372 KGRDWLKIADVPYVEIDGKFIYDSD 1396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 212/381 (55%), Gaps = 34/381 (8%)

Query: 8   LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSS-------SSRRY 60
           LE L I  C SL     +QLPP+LK+L I  C+N+  L +++G  SSS       S    
Sbjct: 177 LEQLRIENCESLISFGRIQLPPTLKKLEIRYCENLLCL-LDDGEGSSSKKSDENTSCSGN 235

Query: 61  TSYLLEELRICSCRSLTCIFSKNELPATLESLEVG------------NLPPSLRSLYVSH 108
            S LLE L +  C SLT I    ELP+ L+ L+V              LP  L+ L +  
Sbjct: 236 NSSLLEYLYVGICNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPAGLKHLAIDS 292

Query: 109 CSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGL 168
           C  LES+ +R  +N SLE + I  C +L+ LP GLH L  L++I IW C  LVSF   GL
Sbjct: 293 CENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEGL 352

Query: 169 PCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGN 228
           P   L RL I  C+ L+A+P  +HNL SL+EL+I    ++ S  E+G PT+L  L    +
Sbjct: 353 P-INLRRLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLTYLA-TVD 410

Query: 229 MEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 288
           ++I +    W  G H+ S+LR L I G     +SFP  D      + LP++L  L IEDF
Sbjct: 411 LKICELLFNW--GMHKLSALRTLIIQG-GFSHISFPSVD----MGVRLPSALNRLSIEDF 463

Query: 289 PNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGG 347
           PNLE LS S   +L +L  L + DCPKL  FP KGLPSSLLEL I  CPL+ ++  K   
Sbjct: 464 PNLEYLSYSGFQNLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQI-KGRV 522

Query: 348 QYWNLLTHIPYVSIDYKWVFD 368
           + W  + HIPY++ID K V D
Sbjct: 523 KEWLKIRHIPYINIDGKVVSD 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  221 bits (562), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 158/400 (39%), Positives = 225/400 (56%), Gaps = 38/400 (9%)

Query: 5    NSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTL------------TVEEGIQ 52
            N+ LE L +  C S+  IA  QLP +LK+L IS C N++ +              +E I 
Sbjct: 1034 NACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDIN 1093

Query: 53   SSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESL------------EVGNLPPS 100
            + S +       L+ L I SC SLT + S  +LPATL  L              G LP +
Sbjct: 1094 NRSKTH------LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAA 1147

Query: 101  LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENL 160
            L+ L +   SKL+ IAERL  NTSLE I I NC  LK LP  LHNL +L++  I+ C++ 
Sbjct: 1148 LQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSF 1207

Query: 161  VSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVE-LPSLEEDGLPTN 219
             SF   GLP + L  L I +C+ L+ALP G+ NLTSLQ+L I   ++ LPS +E GLPTN
Sbjct: 1208 SSFPAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQE-GLPTN 1265

Query: 220  LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS 279
            L  L +  +++ +K   EW  G  + +SL +L+I G   D+ S+P E +  G  + LP S
Sbjct: 1266 LIELNMH-DLKFYKPMFEW--GLQQPTSLIKLSIHGECLDVDSYPGEREN-GVMMLLPNS 1321

Query: 280  LTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLI 338
            L+ L I  F NLE LS     +L +L  L++ +C KL   P++GLP SL +L I +CPL+
Sbjct: 1322 LSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLL 1381

Query: 339  EEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPTEDDSTE 378
             + C  + GQ W+ + HIP V ID K++ +   T+  +T+
Sbjct: 1382 SQHCNNEKGQEWSKIAHIPCVLIDNKFIHETVTTDSFTTQ 1421

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 207/377 (54%), Gaps = 38/377 (10%)

Query: 5   NSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIR------------TLTVEEGIQ 52
           N+ L  L +  C S+  IA  QLP +LK+L IS C N++            ++  +E I 
Sbjct: 375 NACLVRLCVVRCDSMKSIARGQLPTTLKRLEISHCMNLQCALDEGEGSSSSSVMHDEDIN 434

Query: 53  SSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESL------------EVGNLPPS 100
           + S +       L+ L I SC SLT + S  +LPATL  L              G LP +
Sbjct: 435 NRSKTH------LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAA 488

Query: 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENL 160
           L+ L +    KL+ IAERL  NT LE I I NC  LK LP  LHNL +L++ +I  C + 
Sbjct: 489 LQYLEIQSIPKLQKIAERLHQNTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSF 548

Query: 161 VSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVE-LPSLEEDGLPTN 219
            SF   GLP +    L I +C+ L+ALP G+ NLTSLQ+L I   ++ LPS +E GLPTN
Sbjct: 549 SSFPAAGLP-SNPRVLGIKNCKNLKALPNGMRNLTSLQKLDISNRLDSLPSPQE-GLPTN 606

Query: 220 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS 279
           L  L +  +++ +K   EW  G  + +SL +L+I G   D+ SFP E +  G  + LP S
Sbjct: 607 LIELNMI-DLKFYKPMFEW--GLQQLTSLIKLSIHGECLDVDSFPGEREN-GAMMLLPNS 662

Query: 280 LTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLI 338
           L+ L I  F NLE LS     +L +L  L++ +C KL   P++GLP SL +L I +CPL+
Sbjct: 663 LSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLL 722

Query: 339 EEKCRKDGGQYWNLLTH 355
            + C  + GQ W+ + H
Sbjct: 723 SQHCNNEKGQEWSKIAH 739

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 200/368 (54%), Gaps = 55/368 (14%)

Query: 7    SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLE 66
            SL+ +EI  CHSL Y A  Q+P +L++++I DC ++R+L   E + S SSS   +   LE
Sbjct: 1068 SLKDIEITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSS---SHNCLE 1124

Query: 67   ELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER--LDNNTS 124
             L I  C+SLT +   ++L              +LR L +  C +LE +A      NNT+
Sbjct: 1125 YLNIERCQSLTLLSLSDQLVR------------ALRELDIYDCEQLEFLAPDGLFCNNTN 1172

Query: 125  --LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCE 182
              LE   I  C++LK LP                         GG+  + L  + I DC+
Sbjct: 1173 YFLENFRIRRCQNLKSLPR----------------------LSGGIRGSNLREIRITDCD 1210

Query: 183  RLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL---EIDGNMEIWKSTIEWG 239
            RLEALP+ +HN  SL++L I     L        P NL SL   ++     +W+  +EWG
Sbjct: 1211 RLEALPEDMHNFNSLEKLIIDYREGLTC----SFPANLTSLMIWKVKSCKSLWE--LEWG 1264

Query: 240  RGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIV 299
               HR +SLR L I G D DMVSFP +  R+ T LP   SLT L I  FPNL++LSS   
Sbjct: 1265 --LHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLP--KSLTELSIGGFPNLKKLSSKGF 1320

Query: 300  D-LQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPY 358
              L +L  L+L DCPKL   P++GLP SL EL I+ CP+++E+C+   G+YW+ ++HIPY
Sbjct: 1321 QFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRYWHKISHIPY 1380

Query: 359  VSIDYKWV 366
            + ID+K +
Sbjct: 1381 IDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495054|ref|XP_002267622.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 208/379 (54%), Gaps = 45/379 (11%)

Query: 6    SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
            +SL  L I  C SL+ +  + LPP L+ LRI  C  + TL   EG+  ++ S       L
Sbjct: 987  TSLRNLVIKECQSLSSLPEMGLPPMLETLRIEKCHILETLP--EGMTQNNIS-------L 1037

Query: 66   EELRICSCRSLTCI-------------FSKNELPATLESLEVGNLPPSLRSLYVSH-CSK 111
            + L I  C SLT +               K ELP   E+ +  N  P L    +   C  
Sbjct: 1038 QRLYIEDCDSLTSLPIISSLKSLEIKQCRKVELPIPEETTQ--NYYPWLTYFRIRRSCDS 1095

Query: 112  LESIAERLDNNTSLETIDISNCESLK--ILPSGLHN--LRQLQKIEIWECENLVSFTEGG 167
            L S    L   T LET+ I +C +L+   +P GLHN  L  LQ+I IW C NLVSF +GG
Sbjct: 1096 LTSFP--LAFFTKLETLYIGDCTNLESFYIPDGLHNMDLTSLQRIHIWNCPNLVSFPQGG 1153

Query: 168  LPCAKLTRLDIYDCERLEALPKGLHNL-TSLQELTIGKGVELPSLEEDGLPTNLHSLEID 226
            LP + L  L I +C++L++LP+ +H L TSL++L I    E+ S  E GLPTNL SL+I 
Sbjct: 1154 LPASNLRDLCIDNCKKLKSLPQRMHTLLTSLEDLDIYDCSEIVSFPEGGLPTNLSSLDIG 1213

Query: 227  GNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIE 286
               ++ +S  EWG       SLR L I G    + SF  E       L LP++L S  I 
Sbjct: 1214 SCYKLMESRKEWG--LQTLPSLRGLVIDGGTGGLESFSEE------WLLLPSTLFSFSIF 1265

Query: 287  DFPNLERLSSSIVDLQNLT---ILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCR 343
            DFP+L+ L +  + LQNLT   IL++ +C KLK FP++GLPSSL  L I+ CP+++++C+
Sbjct: 1266 DFPDLKYLDN--LGLQNLTSLEILEMRNCVKLKSFPKQGLPSSLTALQIYGCPVLKKRCQ 1323

Query: 344  KDGGQYWNLLTHIPYVSID 362
            +D G+ W  + HI ++ +D
Sbjct: 1324 RDKGKEWRKIAHIHWIDMD 1342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 202/389 (51%), Gaps = 67/389 (17%)

Query: 6    SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
            +SL+ L I  C SL     + LPP L+ L I  C  + +L   EG+  ++++       L
Sbjct: 971  TSLKNLNIENCESLASFPEMALPPMLESLEIRACPTLESLP--EGMMQNNTT-------L 1021

Query: 66   EELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE-SIAERLDNN-- 122
            + L I  C SL        LP  ++SL         + L +  C KLE ++ E + +N  
Sbjct: 1022 QCLEIWHCGSL------RSLPRDIDSL---------KRLVICECKKLELALHEDMTHNHY 1066

Query: 123  -----------------------TSLETIDISNCESLKIL--PSGLH--NLRQLQKIEIW 155
                                   T LET+D  NC +L+ L  P GLH  +L  LQ +EI 
Sbjct: 1067 ASLTKFDITSCCDSLTSFPLASFTKLETLDFFNCGNLESLYIPDGLHHVDLTSLQSLEIR 1126

Query: 156  ECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNL-TSLQELTIGKGVELPSLEED 214
             C NLVSF  GGLP   L RL I +CE+L++LP+G+H L TSLQ L I    E+ S  E 
Sbjct: 1127 NCPNLVSFPRGGLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEG 1186

Query: 215  GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTAL 274
            GLPTNL  L+I    ++  + +EWG        LR L I G          E++R     
Sbjct: 1187 GLPTNLSELDIRNCNKLVANQMEWG--LQTLPFLRTLTIEG---------YENERFPEER 1235

Query: 275  PLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIW 333
             LP++LTSL I  FPNL+ L +  +  L +L  L++ +C  LK FP++GLPSSL  L+I 
Sbjct: 1236 FLPSTLTSLEIRGFPNLKSLDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIE 1295

Query: 334  DCPLIEEKCRKDGGQYWNLLTHIPYVSID 362
            +CPL+ ++C++D G+ W  ++HIP ++ D
Sbjct: 1296 ECPLLNKRCQRDKGKEWPKISHIPCIAFD 1324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 189/367 (51%), Gaps = 38/367 (10%)

Query: 4    TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSY 63
            +N  LE LEI  C SL    G  LP +LK L+I  C  +++L  E+ + + +       +
Sbjct: 1077 SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTELKSLP-EDLMHNKNGPGTLCHF 1135

Query: 64   LLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNN 122
              E L I  C SL             +S   G LP  L++L +  CS+L+ ++E  L ++
Sbjct: 1136 --EHLEIIGCPSL-------------KSFPDGKLPTRLKTLKIWDCSQLKPLSEMMLHDD 1180

Query: 123  TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCE 182
             SLE + IS+CE+L   P  L + + L ++ +  C  L  F   G P A L  L IY+C+
Sbjct: 1181 MSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYNCK 1240

Query: 183  RLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEI------DGNMEIWKSTI 236
             L++LP  +  LTSLQELTI     L S     +P +L SLEI      DG +  W    
Sbjct: 1241 NLKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDCDNLDGCLSEW---- 1296

Query: 237  EWGRGFHRFSSLRRLAISG-CDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS 295
                     + LR  +I+G C    VSFP ++K L     LP +LTS+WI   PNLE LS
Sbjct: 1297 ----NLQSLTCLRDFSIAGGCFSHTVSFP-DEKCL-----LPTNLTSVWIGRLPNLESLS 1346

Query: 296  SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTH 355
              +  L  L  L+++DCPKLK  P   LP +L    I DCPL+ ++C K  G YW L++H
Sbjct: 1347 MQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKLKGVYWPLISH 1406

Query: 356  IPYVSID 362
            IP V ID
Sbjct: 1407 IPCVEID 1413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777746|emb|CAN60302.1| hypothetical protein VITISV_010202 [Vitis vinifera]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 202/389 (51%), Gaps = 67/389 (17%)

Query: 6    SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
            +SL+ L I  C SL     + LPP L+ L I  C  + +L   EG+  ++++       L
Sbjct: 834  TSLKNLNIENCESLASFPEMALPPMLESLEIRACPTLESLP--EGMMQNNTT-------L 884

Query: 66   EELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE-SIAERLDNN-- 122
            + L I  C SL        LP  ++SL         + L +  C KLE ++ E + +N  
Sbjct: 885  QCLEIWHCGSL------RSLPRDIDSL---------KRLVICECKKLELALHEDMTHNHY 929

Query: 123  -----------------------TSLETIDISNCESLKIL--PSGLHN--LRQLQKIEIW 155
                                   T LET+D  NC +L+ L  P GLH+  L  JQ +EI 
Sbjct: 930  ASLTKFDITSCCDSLTSFPLASFTKLETLDFFNCGNLESLYIPDGLHHVDLTSJQSLEIR 989

Query: 156  ECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNL-TSLQELTIGKGVELPSLEED 214
             C NLVSF  GGLP   L RL I +CE+L++LP+G+H L TSLQ L I    E+ S  E 
Sbjct: 990  NCPNLVSFPRGGLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEG 1049

Query: 215  GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTAL 274
            GLPTNL  L+I    ++  + +EWG        LR L I G          E++R     
Sbjct: 1050 GLPTNLSELDIRNCNKLVANQMEWG--LQTLPFLRTLTIEG---------YENERFPEER 1098

Query: 275  PLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIW 333
             LP++LTSL I  FPNL+ L +  +  L +L  L++ +C  LK FP++GLPSSL  L+I 
Sbjct: 1099 FLPSTLTSLEIRGFPNLKSLDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIE 1158

Query: 334  DCPLIEEKCRKDGGQYWNLLTHIPYVSID 362
            +CPL+ ++C++D G+ W  ++HIP ++ D
Sbjct: 1159 ECPLLNKRCQRDKGKEWPKISHIPCIAFD 1187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495085|ref|XP_003634909.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 210/392 (53%), Gaps = 67/392 (17%)

Query: 6    SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
            +SL+ L I  C SL     + LPP L++LRI  C  + +L   EG+  ++++       L
Sbjct: 980  TSLKNLNIRYCESLASFPEMALPPMLERLRIWSCPILESLP--EGMMQNNTT-------L 1030

Query: 66   EELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE-SIAERLDNN-- 122
            + L IC C SL        LP  ++SL         ++L +S C KLE ++ E + +N  
Sbjct: 1031 QCLEICCCGSL------RSLPRDIDSL---------KTLSISGCKKLELALQEDMTHNHY 1075

Query: 123  -----------------------TSLETIDISNCESLKILP--SGLHN--LRQLQKIEIW 155
                                   T LE + + NC +L+ L    GLH+  L  L+ +EI 
Sbjct: 1076 ASLTEFEINGIWDSLTSFPLASFTKLEKLHLWNCTNLESLSIRDGLHHVDLTSLRSLEIR 1135

Query: 156  ECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNL-TSLQELTIGKGVELPSLEED 214
             C NLVSF  GGLP   L  LDI +C++L++LP+G+H L TSLQ+L I    E+ S  E 
Sbjct: 1136 NCPNLVSFPRGGLPTPNLRMLDIRNCKKLKSLPQGMHTLLTSLQDLYISNCPEIDSFPEG 1195

Query: 215  GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTAL 274
            GLPTNL SL I    ++    +EWG        LR L I+G + +   FP  ++R     
Sbjct: 1196 GLPTNLSSLYIMNCNKLLACRMEWG--LQTLPFLRTLQIAGYEKE--RFP--EERF---- 1245

Query: 275  PLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIW 333
             LP++LTSL I  FPNL+ L +  +  L +L  L++  C KLK FP++GLPSSL  L+I 
Sbjct: 1246 -LPSTLTSLGIRGFPNLKSLDNKGLQHLTSLETLEIWKCEKLKSFPKQGLPSSLSRLYIE 1304

Query: 334  DCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKW 365
             CPL++++C++D G+ W  ++HIP ++ D  +
Sbjct: 1305 RCPLLKKRCQRDKGKEWPNVSHIPCIAFDIHY 1336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.871	0.232	0.313	5.6e-29
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.828	0.159	0.270	1.2e-15
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.531	0.165	0.324	1.1e-13
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.734	0.235	0.268	6.5e-13
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.665	0.208	0.302	8.7e-13
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.460	0.173	0.316	1.5e-12
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.539	0.165	0.297	7.4e-11
TAIR|locus:2028681	1161	AT1G31540 [Arabidopsis thalian	0.573	0.187	0.290	1.5e-10
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.647	0.206	0.275	1.5e-10
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.760	0.223	0.271	2.2e-10

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
 Identities = 119/379 (31%), Positives = 192/379 (50%)

Query:     3 DTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQXXXXXXXXXX 62
             D  + +E L++     ++++  ++LP +L+ L I  CD + +L   E +           
Sbjct:  1070 DDETDMEYLKVT---DISHL--MELPQNLQSLHIDSCDGLTSLP--ENLTESYPN----- 1117

Query:    63 XLLEELRICSCRSLTCIFSKNELPATLESLEVGN---------LPPS-----LRSLYV-S 107
               L EL I +C SL   F  +  P TL++L + +         L P+     L  L++ S
Sbjct:  1118 --LHELLIIACHSLES-FPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGS 1174

Query:   108 HCSKLESIAERLDNNTSLETIDISNCESLKI--LPSGLHNLR-QLQKIEIWECENLVSFT 164
              CS L +    L     L ++ I +CES K   + +GL + R  L+ +EI +C NL +F 
Sbjct:  1175 SCSNLVNFP--LSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFP 1232

Query:   165 EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLE 224
             +GGLP  KL+ + + +C++L+ALP+ L  LTSL  L I K  E+ ++   G P+NL +L 
Sbjct:  1233 QGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLC 1292

Query:   225 IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLW 284
             I    ++    IEWG       +LR L I G ++D+ SFP E    G    LP S+ SL 
Sbjct:  1293 ISLCDKL-TPRIEWG--LRDLENLRNLEIDGGNEDIESFPEE----GL---LPKSVFSLR 1342

Query:   285 IEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCR 343
             I  F NL+ L+     D + +  +++  C KL+   ++ LP  L  L I  C L+ E   
Sbjct:  1343 ISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTETFA 1401

Query:   344 KDGGQYWNLLTHIPYVSID 362
             +   +++ +L +IPYV ID
Sbjct:  1402 EVETEFFKVL-NIPYVEID 1419

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 91/337 (27%), Positives = 152/337 (45%)

Query:     8 LEILEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIRTL--TVEEGIQXXXXXXXXXXXL 64
             L++L +  C S+  +    +    L+ L +++C ++  L  ++   I            L
Sbjct:   713 LQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDLGCLRLL 772

Query:    65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTS 124
                L I    +L   F  N   + +E   +GN   +L++L + +CS L  +   + N  +
Sbjct:   773 KLPLSIVKFTNLKK-FILNGCSSLVELPFMGNAT-NLQNLDLGNCSSLVELPSSIGNAIN 830

Query:   125 LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERL 184
             L+ +D+SNC SL  LPS + N   L+ +++ +C +LV           L RLD+  C  L
Sbjct:   831 LQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSL 890

Query:   185 EALPKGLHNLTSLQELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFH 243
               LP  + N++ LQ L +     L  L    G  TNL  L++ G      S +E      
Sbjct:   891 VELPSSVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSG----CSSLVELPSSIG 946

Query:   244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN 303
               ++L+ L +  C + +V  P     +G  L L   L +L +     LE L S+I +L++
Sbjct:   947 NITNLQELNLCNCSN-LVKLP---SSIGN-LHL---LFTLSLARCQKLEALPSNI-NLKS 997

Query:   304 LTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE 340
             L  L L DC + K FPE    S+ +E    D   +EE
Sbjct:   998 LERLDLTDCSQFKSFPEI---STNIECLYLDGTAVEE 1031

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 73/225 (32%), Positives = 108/225 (48%)

Query:   101 LRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
             LR+L     S  E + E   L   T+LE + + +C SL  LPS +  L  LQ++ +  C 
Sbjct:   715 LRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCS 774

Query:   159 NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTI---GKGVELPSLEEDG 215
             +LV     G    KL  L + +C  LE LP  + N  +LQ+L++    + VELP++E   
Sbjct:   775 SLVELPSFG-NATKLEELYLENCSSLEKLPPSI-NANNLQQLSLINCSRVVELPAIEN-- 830

Query:   216 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALP 275
               TNL  L++ GN     S IE        ++L+ L ISGC   +V  P     +G    
Sbjct:   831 -ATNLQKLDL-GNCS---SLIELPLSIGTATNLKELNISGCSS-LVKLP---SSIGDI-- 879

Query:   276 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320
                +L    + +  NL  L  +I +L+ L  L L  C +LK FPE
Sbjct:   880 --TNLKEFDLSNCSNLVELPINI-NLKFLDTLNLAGCSQLKSFPE 921

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 85/317 (26%), Positives = 137/317 (43%)

Query:    65 LEELRICSCRSLTCIFSK-----NELPATL---ESL-----EVGNLPPSLRSLYVSHCSK 111
             L+ELR+ +C SL  + S      N L   L    SL      +GNL  +L+ L+++ CS 
Sbjct:   682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLT-NLKKLFLNRCSS 740

Query:   112 LESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCA 171
             L  +     N TSL+ +++S C SL  +PS + N+  L+K+    C +LV          
Sbjct:   741 LVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNT 800

Query:   172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEI 231
              L  L + +C  L   P  + NLT L++L +   + L  L   G   NL SL +      
Sbjct:   801 NLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSD---- 856

Query:   232 WKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNL 291
               S +E        ++L  L + GC + ++  P     +        +L SL++    +L
Sbjct:   857 CSSLMELPFTIENATNLDTLYLDGCSN-LLELPSSIWNI-------TNLQSLYLNGCSSL 908

Query:   292 ERLSSSIVDLQNLTILQLIDCPKLKYFPEK-----GLP-------SSLLELWIWDCPLIE 339
             + L S + +  NL  L L+ C  L   P        L        SSLLEL +   P++ 
Sbjct:   909 KELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVP 968

Query:   340 EKCRKDGGQYWNLLTHI 356
             +    D G   +L+  +
Sbjct:   969 DSLILDAGDCESLVQRL 985

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 8.7e-13, P = 8.7e-13
 Identities = 86/284 (30%), Positives = 128/284 (45%)

Query:    64 LLEELR-ICSCRSLTCIFSKN--ELP--ATLESLEVGNLPPSLRSLYVSHCSKLESIAER 118
             L EE++ + + + +    SKN  ELP  ++  +LEV NL         + CS L  +   
Sbjct:   666 LWEEIQPLRNLKRMDLFSSKNLKELPDLSSATNLEVLNL---------NGCSSLVELPFS 716

Query:   119 LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDI 178
             + N T L  +++S C SL  LPS + N   LQ I+   CENLV           L  LD+
Sbjct:   717 IGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATNLKELDL 776

Query:   179 YDCERLEALPKGLHNLTSLQELTI---GKGVELPSLEEDGLPTNLHSLEIDGNMEIWKST 235
               C  L+ LP  + N T+L++L +       ELPS    G  TNL  L +     + K  
Sbjct:   777 SCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPS--SIGNCTNLKELHLTCCSSLIKLP 834

Query:   236 IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS 295
                G   +    L +L ++GC+  +V  P     +G A     +L  L +     L  L 
Sbjct:   835 SSIGNAIN----LEKLILAGCES-LVELP---SFIGKA----TNLKILNLGYLSCLVELP 882

Query:   296 SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIE 339
             S I +L  L+ L+L  C KL+  P       L EL + DC L++
Sbjct:   883 SFIGNLHKLSELRLRGCKKLQVLPTNINLEFLNELDLTDCILLK 926

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 63/199 (31%), Positives = 99/199 (49%)

Query:   101 LRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
             LR+L     S  E + E   L   T+LE + +  C SL  LPS +  L  LQ +++  C 
Sbjct:   669 LRNLKWMDLSDSEDLKELPNLSTATNLEELKLRRCSSLVELPSSIEKLTSLQILDLHSCS 728

Query:   159 NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTI---GKGVELPSLEEDG 215
             +LV     G    KL +LD+ +C  L  LP  + N  +LQEL++    + VELP++E   
Sbjct:   729 SLVELPSFG-NATKLEKLDLENCSSLVKLPPSI-NANNLQELSLRNCSRVVELPAIEN-- 784

Query:   216 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALP 275
               TNL  L++     + +  + W +   R S LR L ++ C++ +VS P           
Sbjct:   785 -ATNLRELKLQNCSSLIELPLSWVK---RMSRLRVLTLNNCNN-LVSLP----------Q 829

Query:   276 LPASLTSLWIEDFPNLERL 294
             LP SL  ++ ++  +LERL
Sbjct:   830 LPDSLDYIYADNCKSLERL 848

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 67/225 (29%), Positives = 104/225 (46%)

Query:   109 CSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGL 168
             CSKL  + E      +L+ +D+S+   LK LPS +  L  LQ +++ +C +LV      +
Sbjct:   725 CSKLRKLWEGTKQLRNLKWMDLSDSRDLKELPSSIEKLTSLQILDLRDCSSLVKLPPS-I 783

Query:   169 PCAKLTRLDIYDCERLEALPKGLHNLTSLQELTI---GKGVELPSLEEDGLPTNLHSLEI 225
                 L  L + +C R+  LP  + N+T+L +L +      +ELP     G   NL  L+I
Sbjct:   784 NANNLQGLSLTNCSRVVKLP-AIENVTNLHQLKLQNCSSLIELPL--SIGTANNLWKLDI 840

Query:   226 DGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWI 285
              G   + K     G      ++L+   +S C + +V  P     +G        L  L +
Sbjct:   841 RGCSSLVKLPSSIGD----MTNLKEFDLSNCSN-LVELP---SSIGNL----QKLFMLRM 888

Query:   286 EDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLEL 330
                  LE L ++I +L +L IL L DC +LK FPE     S L L
Sbjct:   889 RGCSKLETLPTNI-NLISLRILDLTDCSQLKSFPEISTHISELRL 932

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2028681 AT1G31540 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 68/234 (29%), Positives = 113/234 (48%)

Query:    89 LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ 148
             +  +  G  P +L  L + + SKL  + E +   T L+ +D+    +LK++P  L     
Sbjct:   595 MRCMPFGFRPENLVKLEMQY-SKLHKLWEGVAPLTCLKEMDLHGSSNLKVIPD-LSEATN 652

Query:   149 LQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVEL 208
             L+ + +  CE+LV          KL  LD+ +C+ L+ LP G  NL SL  L +    +L
Sbjct:   653 LEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGF-NLKSLDRLNLYHCSKL 711

Query:   209 PSLEEDGLPTNLHSLEID-GNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED 267
              +  +    TN+  L ++  N+E + S +      H   +L    IS  + D   +  E+
Sbjct:   712 KTFPK--FSTNISVLNLNLTNIEDFPSNL------H-LENLVEFRISKEESDEKQWE-EE 761

Query:   268 KRLGT--ALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP 319
             K L    A+ L  +LTSL +E+ P+L  L+SS  +L  L  L +I+C  L+  P
Sbjct:   762 KPLTPFLAMMLSPTLTSLHLENLPSLVELTSSFQNLNQLKDLIIINCINLETLP 815

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 80/290 (27%), Positives = 133/290 (45%)

Query:    65 LEELRICSCRSLTCIFSKNELPATLESLEVGN------LPP-----SLRSLYVSHCSKLE 113
             LEEL++ +C SL  + S  E   +L+ L++ N      LP       LR L + +CS L 
Sbjct:   739 LEELKLRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLI 798

Query:   114 SIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL 173
              +   +   T+L+ ++IS C SL  LPS + ++  L+  ++  C +LV+          L
Sbjct:   799 ELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNL 858

Query:   174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM--EI 231
              +L +  C +LEALP  + NL SL  L +    +L S  E  + T++  L + G    E+
Sbjct:   859 CKLIMRGCSKLEALPINI-NLKSLDTLNLTDCSQLKSFPE--ISTHISELRLKGTAIKEV 915

Query:   232 WKSTIEWG--RGF------------HRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLP 277
               S + W     F            H F  + +L +S    D+   P   KR+     L 
Sbjct:   916 PLSIMSWSPLADFQISYFESLMEFPHAFDIITKLHLS---KDIQEVPPWVKRMSRLRDL- 971

Query:   278 ASLTSLWIEDFPNLERLSSSI--VDLQNLTILQLIDC----PKLK-YFPE 320
              SL +    +  +L +LS S+  +   N   L+ +DC    P+++ YFP+
Sbjct:   972 -SLNNC--NNLVSLPQLSDSLDYIYADNCKSLERLDCCFNNPEIRLYFPK 1018

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 84/309 (27%), Positives = 135/309 (43%)

Query:    31 LKQLRISDCDNIRTLTVEEG-IQXXXXXXXXXXXLLEELRICSCRSLTCIFSKNELPATL 89
             L +L +SDC  +RTL    G +             LE L   + ++LT + +  E+   L
Sbjct:   741 LVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPD-TLQNLTSLETL-EVSGCL 798

Query:    90 ESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQL 149
                E   +  S+  L +S  S +E I  R+ N + L ++DIS  + L  LP  +  LR L
Sbjct:   799 NVNEFPRVSTSIEVLRISETS-IEEIPARICNLSQLRSLDISENKRLASLPVSISELRSL 857

Query:   150 QKIEIWECENLVSFTEGGLPCAKLTRLDIYDCER--LEALPKGLHNLTSLQELTIGKGVE 207
             +K+++  C  L SF      C  ++ L  +D +R  ++ LP+ + NL +L+ L   + V 
Sbjct:   858 EKLKLSGCSVLESFPLE--ICQTMSCLRWFDLDRTSIKELPENIGNLVALEVLQASRTVI 915

Query:   208 LPSLEEDGLPTNLHSLEIDGNMEIWKSTIE-WGRGFHRFSSLRRLAISGCDDDMVSFPLE 266
               +       T L  L I  +    +  +        RF  LR L++S  +  M   P  
Sbjct:   916 RRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCPPLSRFDDLRALSLSNMN--MTEIPNS 973

Query:   267 DKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSS 326
                L   L L  S          N E + +SI  L  L  L L +C +L+  P++ LP  
Sbjct:   974 IGNLWNLLELDLSGN--------NFEFIPASIKRLTRLNRLNLNNCQRLQALPDE-LPRG 1024

Query:   327 LLELWIWDC 335
             LL ++I  C
Sbjct:  1025 LLYIYIHSC 1033

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	380
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-11
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-07

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 17/213 (7%)

Query: 110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP 169
           SKLE + + + + T L  ID+   ++LK +P  L     L+ +++ +C +LV        
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679

Query: 170 CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM 229
             KL  LD+  CE LE LP G+ NL SL  L +     L S  +  + TN+  L++D   
Sbjct: 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDE-- 734

Query: 230 EIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK-RLGTAL--PLPASLTSLWIE 286
               + IE      R  +L  L +     +M S  L ++ +  T L   L  SLT L++ 
Sbjct: 735 ----TAIEEFPSNLRLENLDELILC----EMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786

Query: 287 DFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP 319
           D P+L  L SSI +L  L  L++ +C  L+  P
Sbjct: 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 27/207 (13%)

Query: 6   SSLEILEIWVCHSLTYI-AGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYL 64
           ++LE L++  C SL  + + +Q    L+ L +S C+N+  L     ++S           
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS----------- 705

Query: 65  LEELRICSCRSLTCI--FSKNELPATLESLEVGNLPPSLRS---LYVSHCS-KLESIAER 118
           L  L +  C  L      S N     L+   +   P +LR      +  C  K E + ER
Sbjct: 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765

Query: 119 LDNNT--------SLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPC 170
           +   T        SL  + +S+  SL  LPS + NL +L+ +EI  C NL +    G+  
Sbjct: 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GINL 824

Query: 171 AKLTRLDIYDCERLEALPKGLHNLTSL 197
             L  LD+  C RL   P    N++ L
Sbjct: 825 ESLESLDLSGCSRLRTFPDISTNISDL 851

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 89/346 (25%), Positives = 136/346 (39%), Gaps = 89/346 (25%)

Query: 8   LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEE 67
           L  +++    +L  I  + +  +L+ L++SDC ++  L          SS +Y + L E+
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL---------PSSIQYLNKL-ED 685

Query: 68  LRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLET 127
           L +  C +L             E L  G    SL  L +S CS+L+S     D +T++  
Sbjct: 686 LDMSRCENL-------------EILPTGINLKSLYRLNLSGCSRLKSF---PDISTNISW 729

Query: 128 IDISNCESLKILPSGLH--NLRQLQKIE-----IWECENLVSFTEGGLPCAKLTRLDIYD 180
           +D+    +++  PS L   NL +L   E     +WE    ++     L    LTRL + D
Sbjct: 730 LDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS-PSLTRLFLSD 787

Query: 181 CERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPT--NLHSLEIDGNMEIWKSTIEW 238
              L  LP  + NL  L+ L I   + L +L     PT  NL SLE              
Sbjct: 788 IPSLVELPSSIQNLHKLEHLEIENCINLETL-----PTGINLESLE-------------- 828

Query: 239 GRGFHRFSSLRRLAISGCDDDMVSFP-----LEDKRL-GTALPLPASLTSLWIEDFPNLE 292
                       L +SGC   + +FP     + D  L  T +         WIE F NL 
Sbjct: 829 -----------SLDLSGCSR-LRTFPDISTNISDLNLSRTGI----EEVPWWIEKFSNLS 872

Query: 293 RL-----------SSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSL 327
            L           S +I  L++L  +   DC  L      G PS +
Sbjct: 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEV 918

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.42
KOG4341	483	consensus F-box protein containing LRR [General fu	99.41
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.26
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
PRK15386	426	type III secretion protein GogB; Provisional	98.56
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.43
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.13
PLN03150	623	hypothetical protein; Provisional	98.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.99
PLN03150	623	hypothetical protein; Provisional	97.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.87
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.71
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.55
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.82
smart00370	26	LRR Leucine-rich repeats, outliers.	81.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.42

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=1.6e-22  Score=209.17  Aligned_cols=257  Identities=18%  Similarity=0.117  Sum_probs=117.5

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD  180 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  180 (380)
                      |++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.|+++++.....+|..+..+++|++|++++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            55555544433334444444455555555544443344444444445555555544322223343444444555555554


Q ss_pred             CCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCC
Q 035836          181 CERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDD  259 (380)
Q Consensus       181 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  259 (380)
                      |.....+|..+.++++|+.|++++|......| ....+++|+.|++++|......+ .+   +..+++|+.|++++ |..
T Consensus       246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~---~~~l~~L~~L~l~~-n~~  320 (968)
T PLN00113        246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-EL---VIQLQNLEILHLFS-NNF  320 (968)
T ss_pred             ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC-hh---HcCCCCCcEEECCC-Ccc
Confidence            44333444444445555555555443322222 12334455555555443222111 11   33445555555554 322


Q ss_pred             CcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhH
Q 035836          260 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLI  338 (380)
Q Consensus       260 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l  338 (380)
                      ...++...       ..+++|+.|+++++.-...+|..+..+++|+.|++++|.--..+|.. ...++|+.|++.+|...
T Consensus       321 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        321 TGKIPVAL-------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             CCcCChhH-------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence            22333222       34555666666554332344545555566666666553222222221 11235566666555432


Q ss_pred             HHHhhccCCCCCccccCcCeeEECceeeecCCCCCC
Q 035836          339 EEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPTED  374 (380)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (380)
                      .     .....+..++.+..+.+.++.+...+|..+
T Consensus       394 ~-----~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~  424 (968)
T PLN00113        394 G-----EIPKSLGACRSLRRVRLQDNSFSGELPSEF  424 (968)
T ss_pred             c-----cCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence            2     112233445667777777777766656543

>PLN03210 Resistant to P

Probab=99.89  E-value=2.7e-22  Score=208.39  Aligned_cols=269  Identities=25%  Similarity=0.406  Sum_probs=188.3

Q ss_pred             CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      .+.+|++|++.++. +..++.+  +..+++        |+.|+++++..+..+      |      .+..++ +|++|++
T Consensus       609 ~~~~L~~L~L~~s~-l~~L~~~--~~~l~~--------Lk~L~Ls~~~~l~~i------p------~ls~l~-~Le~L~L  664 (1153)
T PLN03210        609 RPENLVKLQMQGSK-LEKLWDG--VHSLTG--------LRNIDLRGSKNLKEI------P------DLSMAT-NLETLKL  664 (1153)
T ss_pred             CccCCcEEECcCcc-ccccccc--cccCCC--------CCEEECCCCCCcCcC------C------ccccCC-cccEEEe
Confidence            34556666666554 5554433  344555        777887776655544      2      233445 6899999


Q ss_pred             ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccc
Q 035836          107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEA  186 (380)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~  186 (380)
                      .+|..+..+|..+..+++|+.|++++|+.+..+|..+ ++++|+.|++++|..+..+|..   .++|+.|++.++. +..
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEE  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-ccc
Confidence            8888888888888888899999998888888888655 6888888888888776666542   2356666666543 333


Q ss_pred             ccccC------------------------------CCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhh
Q 035836          187 LPKGL------------------------------HNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKST  235 (380)
Q Consensus       187 ~~~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~  235 (380)
                      +|..+                              ...++|+.|++++|.....+|. ...+++|+.|++.+|..+..++
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            33211                              1134677788887776666664 3678889999998888776655


Q ss_pred             hhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCC
Q 035836          236 IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKL  315 (380)
Q Consensus       236 ~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  315 (380)
                      .     ...+++|+.|++++ |..+..++.          .+++|++|++++ +.++.+|..+..+++|+.|++.+|+++
T Consensus       820 ~-----~~~L~sL~~L~Ls~-c~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        820 T-----GINLESLESLDLSG-CSRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             C-----CCCccccCEEECCC-CCccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCc
Confidence            3     22578888899988 777777664          346788888888 678888888888888888888888888


Q ss_pred             cccCCC-CCcccccEEEecCchhHHHH
Q 035836          316 KYFPEK-GLPSSLLELWIWDCPLIEEK  341 (380)
Q Consensus       316 ~~~~~~-~~~~~L~~L~l~~c~~l~~~  341 (380)
                      +.++.. .-.++|+.+++++|+.++..
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CccCcccccccCCCeeecCCCcccccc
Confidence            887763 22457888888888877643

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=1.3e-22  Score=209.92  Aligned_cols=206  Identities=19%  Similarity=0.181  Sum_probs=127.8

Q ss_pred             CCCCCCccEEEEecCCCCccccC-CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIF   80 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   80 (380)
                      ++.+++|++|++++|.....+|. ...+++|++|++++|.-...+|.  .+..++.        |+.|+++++.....+ 
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~--------L~~L~L~~n~l~~~~-  228 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR--ELGQMKS--------LKWIYLGYNNLSGEI-  228 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh--HHcCcCC--------ccEEECcCCccCCcC-
Confidence            45788999999998865555554 45688999999998873334444  3566666        888888876432211 


Q ss_pred             ccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccc
Q 035836           81 SKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENL  160 (380)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  160 (380)
                           |.     .+..++ +|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|++|++++|...
T Consensus       229 -----p~-----~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        229 -----PY-----EIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             -----Ch-----hHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence                 21     234445 5777777776544466666777777777777765555556666666677777777664333


Q ss_pred             eeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCC
Q 035836          161 VSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       161 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~  229 (380)
                      ..+|..+..+++|+.|++.+|.....+|..+..+++|+.|++.+|......|. ...+++|+.|++++|.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            34454455566666666666655555555566666666666666544333332 2344555666655554

>PLN03210 Resistant to P

Probab=99.88  E-value=1.7e-21  Score=202.42  Aligned_cols=292  Identities=23%  Similarity=0.322  Sum_probs=224.5

Q ss_pred             CCCCCCccEEEEecCC--C---C-ccccC-C-CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecC
Q 035836            2 CDTNSSLEILEIWVCH--S---L-TYIAG-V-QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSC   73 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~--~---~-~~~~~-~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~   73 (380)
                      |.+|++|+.|.+....  .   . ..+|. + ..+++|+.|.+.+++ ++.+|..  + ...+        |+.|++.++
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~--f-~~~~--------L~~L~L~~s  621 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSN--F-RPEN--------LVKLQMQGS  621 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCc--C-CccC--------CcEEECcCc
Confidence            5678999999996542  1   1 11222 1 224679999999987 8888865  2 3455        999999886


Q ss_pred             CCcccccccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEE
Q 035836           74 RSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIE  153 (380)
Q Consensus        74 ~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  153 (380)
                      . +..+      +.     .+..++ +|+.|+++++..++.+|. +..+++|++|++++|..+..+|..+.++++|+.|+
T Consensus       622 ~-l~~L------~~-----~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        622 K-LEKL------WD-----GVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             c-cccc------cc-----ccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            4 4433      11     244566 699999999877887774 77899999999999999999999999999999999


Q ss_pred             ccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC-------------------
Q 035836          154 IWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED-------------------  214 (380)
Q Consensus       154 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------  214 (380)
                      +++|..+..+|... .+++|+.|++++|..+..+|..   .++|+.|+++++. +..+|..                   
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhc
Confidence            99999999998765 6789999999999887777653   3567888887764 2222211                   


Q ss_pred             ------------CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcce
Q 035836          215 ------------GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTS  282 (380)
Q Consensus       215 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~  282 (380)
                                  ..+++|+.|++++|.....++..    ++++++|+.|++++ |..++.+|...        .+++|++
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~-C~~L~~LP~~~--------~L~sL~~  829 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN-CINLETLPTGI--------NLESLES  829 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC-CCCcCeeCCCC--------CccccCE
Confidence                        12467888899888766655432    66899999999999 89999988755        6789999


Q ss_pred             EecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhHHHH
Q 035836          283 LWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLIEEK  341 (380)
Q Consensus       283 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~  341 (380)
                      |++++|..+..+|..   .++|+.|++++ +.++.+|.. ...++|++|++.+|++++..
T Consensus       830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        830 LDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             EECCCCCcccccccc---ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence            999999988887753   36899999998 788888763 23678999999999999864

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.82  E-value=4e-21  Score=174.19  Aligned_cols=296  Identities=19%  Similarity=0.221  Sum_probs=176.4

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCC-CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPP-SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIF   80 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   80 (380)
                      |-.+|+|+.+.+..+ .++.+|.++... +|+.|+|.++. +..+..+ .+..++.        |++|+++.+ .+..+ 
T Consensus        98 f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se-~L~~l~a--------lrslDLSrN-~is~i-  164 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSE-ELSALPA--------LRSLDLSRN-LISEI-  164 (873)
T ss_pred             HhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHH-HHHhHhh--------hhhhhhhhc-hhhcc-
Confidence            345677777777663 666777655533 37777776665 5555544 3444444        666666643 22222 


Q ss_pred             ccCCCCccccccccCCCC--CCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEcccc
Q 035836           81 SKNELPATLESLEVGNLP--PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWEC  157 (380)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~  157 (380)
                                  +.-.+|  .++++|++.+|.....-...|..+.+|..|.++. +.++.+|.. +.+++.|+.|++..+
T Consensus       165 ------------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  165 ------------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             ------------cCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence                        111222  1355555555432222222344444444455544 344444422 223444444444331


Q ss_pred             -----------------------ccceeccCCC-ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-
Q 035836          158 -----------------------ENLVSFTEGG-LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-  212 (380)
Q Consensus       158 -----------------------~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-  212 (380)
                                             +.+..+.++. ..|.++++|++..|.....-..++.+++.|+.|++++|....... 
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence                                   3344444433 236677777777654433333566788888888888875433322 


Q ss_pred             CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCc-
Q 035836          213 EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNL-  291 (380)
Q Consensus       213 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-  291 (380)
                      .+..+++|+.|+|+.|.... .....   |..+..|++|.+++  +.+..+.+..      +.++++|+.|++++ +.+ 
T Consensus       312 ~WsftqkL~~LdLs~N~i~~-l~~~s---f~~L~~Le~LnLs~--Nsi~~l~e~a------f~~lssL~~LdLr~-N~ls  378 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITR-LDEGS---FRVLSQLEELNLSH--NSIDHLAEGA------FVGLSSLHKLDLRS-NELS  378 (873)
T ss_pred             hhhhcccceeEecccccccc-CChhH---HHHHHHhhhhcccc--cchHHHHhhH------HHHhhhhhhhcCcC-CeEE
Confidence            33567888888888876433 22222   66778888888887  6777776533      46888999999988 444 


Q ss_pred             ---cchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchh
Q 035836          292 ---ERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPL  337 (380)
Q Consensus       292 ---~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~  337 (380)
                         ++-...+..+++|++|.+.+ ++++.|+..++  ...|+.|++.+++.
T Consensus       379 ~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  379 WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             EEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcc
Confidence               33344788899999999998 88999988665  46899999998553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=8.7e-21  Score=172.03  Aligned_cols=298  Identities=19%  Similarity=0.282  Sum_probs=186.4

Q ss_pred             CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc--
Q 035836            6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS--   81 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--   81 (380)
                      .+|+.|+|+++ .+.++..  .+.++.|+.|+|+.+. +.+++.. .|..-.+        +++|+++++. ++.+..  
T Consensus       125 ghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~-is~i~~~-sfp~~~n--------i~~L~La~N~-It~l~~~~  192 (873)
T KOG4194|consen  125 GHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNL-ISEIPKP-SFPAKVN--------IKKLNLASNR-ITTLETGH  192 (873)
T ss_pred             cceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhch-hhcccCC-CCCCCCC--------ceEEeecccc-cccccccc
Confidence            35777777774 3333332  3346667777777665 6666554 3333334        6667666542 222200  


Q ss_pred             -------------cCCCCccccccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCccccc-ccCC
Q 035836           82 -------------KNELPATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSG-LHNL  146 (380)
Q Consensus        82 -------------~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l  146 (380)
                                   .|.. .+++.-.+..+| +|+.|++..|. ++.+ .-.|..+++|+.|.+.. +.+..+.++ +..+
T Consensus       193 F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~-~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l  268 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRI-TTLPQRSFKRLP-KLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGL  268 (873)
T ss_pred             ccccchheeeecccCcc-cccCHHHhhhcc-hhhhhhccccc-eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeee
Confidence                         0000 011110222344 25555555442 2222 22344455555555554 344444444 4558


Q ss_pred             CCCcEEEccccccceeccCCC-ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC--CCCCCceEE
Q 035836          147 RQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED--GLPTNLHSL  223 (380)
Q Consensus       147 ~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L  223 (380)
                      .++++|++.. ++++.+..+. ..+++|+.|++++|.....-++++..+++|+.|++++|. ++.+++.  ..+..|++|
T Consensus       269 ~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  269 EKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             cccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhh
Confidence            8899999987 6777776644 568999999999987666556777888999999999884 4555433  457899999


Q ss_pred             EecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCC
Q 035836          224 EIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQ  302 (380)
Q Consensus       224 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~  302 (380)
                      +|+.|.. +.+.. ..  |.++++|++|+++.  +.+...-+.   -..++..+++|+.|.+.+ +.++.++. .+.+++
T Consensus       347 nLs~Nsi-~~l~e-~a--f~~lssL~~LdLr~--N~ls~~IED---aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~  416 (873)
T KOG4194|consen  347 NLSHNSI-DHLAE-GA--FVGLSSLHKLDLRS--NELSWCIED---AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLE  416 (873)
T ss_pred             cccccch-HHHHh-hH--HHHhhhhhhhcCcC--CeEEEEEec---chhhhccchhhhheeecC-ceeeecchhhhccCc
Confidence            9999863 22222 22  77899999999998  343322221   123456789999999999 89999998 899999


Q ss_pred             CCceEeeecCCCCcccCCCCC-cccccEEEe
Q 035836          303 NLTILQLIDCPKLKYFPEKGL-PSSLLELWI  332 (380)
Q Consensus       303 ~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l  332 (380)
                      +|++|++.+ +-+.+|...++ +-.|++|.+
T Consensus       417 ~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~  446 (873)
T KOG4194|consen  417 ALEHLDLGD-NAIASIQPNAFEPMELKELVM  446 (873)
T ss_pred             ccceecCCC-Ccceeecccccccchhhhhhh
Confidence            999999998 66777766555 336666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=5e-20  Score=168.61  Aligned_cols=222  Identities=19%  Similarity=0.206  Sum_probs=145.4

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcccccc-ceeccCCCccCCCCCEEecc
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECEN-LVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~  179 (380)
                      |-.|++++| .+..+|+.+..+..|+.|++++|....---.-+..+++|++|.+++.++ +..+|..+..+.+|..++++
T Consensus       152 LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  152 LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            455555554 2555555555555566666655322111011122344455555554332 33455555556677777777


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD  258 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  258 (380)
                      . ..+..+|+.++.+++|+.|++++|.. +.+.. .....+|++|+++.|... ..+..    +.+++.|+.|.+.++--
T Consensus       231 ~-N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrNQLt-~LP~a----vcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  231 E-NNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRNQLT-VLPDA----VCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             c-cCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccchhc-cchHH----HhhhHHHHHHHhccCcc
Confidence            4 45667777788888888888887743 33322 245668888888886533 33321    45788888888877333


Q ss_pred             CCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836          259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL  337 (380)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~  337 (380)
                      ..+.+|.++       +.+..|+.+..++ ++++-+|..+..|+.|+.|.+.+ +.+..+|.. .+.+-|+.||+.++|+
T Consensus       304 ~FeGiPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  304 TFEGIPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             cccCCccch-------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence            467788777       4677899998888 78898999999999999999976 788888884 4578899999999987


Q ss_pred             HH
Q 035836          338 IE  339 (380)
Q Consensus       338 l~  339 (380)
                      +.
T Consensus       375 LV  376 (1255)
T KOG0444|consen  375 LV  376 (1255)
T ss_pred             cc
Confidence            75

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=3.7e-17  Score=150.03  Aligned_cols=203  Identities=22%  Similarity=0.250  Sum_probs=145.0

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCC-CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEec
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESL-KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDI  178 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  178 (380)
                      +|++|.+++|+..-.-...+-++++|++|++++.+.. ..+|..+..+.+|..++++. +++..+|+....+++|+.|++
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNL  252 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNL  252 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheecc
Confidence            6888999988743333344555778888888875443 46788888888888999887 678888888888888999999


Q ss_pred             cCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCC
Q 035836          179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCD  257 (380)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  257 (380)
                      ++| .++.+.-......+|++|+++.| .++.+|. ...++.|+.|.+.+|.. +-....  ++++++.+|+.+..++  
T Consensus       253 S~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL-~FeGiP--SGIGKL~~Levf~aan--  325 (1255)
T KOG0444|consen  253 SGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL-TFEGIP--SGIGKLIQLEVFHAAN--  325 (1255)
T ss_pred             CcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc-cccCCc--cchhhhhhhHHHHhhc--
Confidence            885 34444444455668888888887 4455553 35677888887776642 211111  2267788888888876  


Q ss_pred             CCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCccc
Q 035836          258 DDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYF  318 (380)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  318 (380)
                      +.++-+|++.       ..+..|+.|.++. +.+..+|..+.-++.|+.|++..++++.--
T Consensus       326 N~LElVPEgl-------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  326 NKLELVPEGL-------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             cccccCchhh-------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCC
Confidence            6777777766       6778888888876 677778888888888888888887777553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=6.1e-18  Score=147.33  Aligned_cols=262  Identities=25%  Similarity=0.324  Sum_probs=170.6

Q ss_pred             ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836            8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA   87 (380)
Q Consensus         8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~   87 (380)
                      |+.+.+++++.....+....+..|..|.+++.. +...|..  ......        ++.++++.+. +..+      |.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~a--ig~l~~--------l~~l~vs~n~-ls~l------p~  108 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAA--IGELEA--------LKSLNVSHNK-LSEL------PE  108 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHH--HHHHHH--------HHHhhcccch-Hhhc------cH
Confidence            344555554332222334445666777777665 5555553  344444        6666665532 2222      22


Q ss_pred             cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC
Q 035836           88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG  167 (380)
Q Consensus        88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  167 (380)
                           .++..+ ++..++.++|. +.+++..++.+..|+.++..+ +.+.++|.++.++.++..+++.+ +.+..+|+..
T Consensus       109 -----~i~s~~-~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~  179 (565)
T KOG0472|consen  109 -----QIGSLI-SLVKLDCSSNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-NKLKALPENH  179 (565)
T ss_pred             -----HHhhhh-hhhhhhccccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-cchhhCCHHH
Confidence                 234445 47777777763 556666777777777777766 55666677777777777777776 5667777666


Q ss_pred             ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836          168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS  247 (380)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  247 (380)
                      ..++.|++++... ..+..+|+.++.+.+|.-|++..+ .+..+|.+..|+.|++|+++.|. +...+.+.   ...+++
T Consensus       180 i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~---~~~L~~  253 (565)
T KOG0472|consen  180 IAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH---LKHLNS  253 (565)
T ss_pred             HHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHH---hccccc
Confidence            6677777777654 346677777777888888888877 44556677778888888877653 44444433   567778


Q ss_pred             cceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCC
Q 035836          248 LRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCP  313 (380)
Q Consensus       248 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  313 (380)
                      |..|++..  +.++++|++.       ..+.+|++|++++ +.+..+|..+.++ .|+.|.+.|+|
T Consensus       254 l~vLDLRd--Nklke~Pde~-------clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  254 LLVLDLRD--NKLKEVPDEI-------CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ceeeeccc--cccccCchHH-------HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence            88888876  7788888777       5777788888887 6788888788887 78888888744

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.55  E-value=3e-16  Score=149.82  Aligned_cols=224  Identities=21%  Similarity=0.230  Sum_probs=147.0

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      ....|.+|++++++.+ .+..+|.+++.+.+|+.++... +.+..+|..+....+|+.+.+.. +.+..+|+...+..+|
T Consensus       236 ~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL  312 (1081)
T KOG0618|consen  236 VHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSL  312 (1081)
T ss_pred             cccccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCccccccee
Confidence            4566778999999997 4778888899999999999988 55577777777777777777766 5677777776667778


Q ss_pred             CEEeccCCCCcccccccC--------------------------CCCCCccEEEeccCCCCC-CCCCCCCCCCceEEEec
Q 035836          174 TRLDIYDCERLEALPKGL--------------------------HNLTSLQELTIGKGVELP-SLEEDGLPTNLHSLEID  226 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l--------------------------~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~  226 (380)
                      ++|++..|. +..+|+.+                          ..++.|+.|++.+|.... .+|....+.+|+.|+|+
T Consensus       313 ~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  313 RTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             eeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            888877642 23333211                          112335555555553222 23445566777777777


Q ss_pred             CCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCce
Q 035836          227 GNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTI  306 (380)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  306 (380)
                      +|.. ...+...   +.++..|++|+++|  +.++.++...       ..+..|++|...+ +.+..+| .+..++.|+.
T Consensus       392 yNrL-~~fpas~---~~kle~LeeL~LSG--NkL~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  392 YNRL-NSFPASK---LRKLEELEELNLSG--NKLTTLPDTV-------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKV  456 (1081)
T ss_pred             cccc-ccCCHHH---HhchHHhHHHhccc--chhhhhhHHH-------HhhhhhHHHhhcC-Cceeech-hhhhcCcceE
Confidence            7642 2222211   55666777777777  6777777655       3566677776665 5667777 6667777888


Q ss_pred             EeeecCCCCcccCC-CCCc-ccccEEEecCchh
Q 035836          307 LQLIDCPKLKYFPE-KGLP-SSLLELWIWDCPL  337 (380)
Q Consensus       307 L~l~~c~~l~~~~~-~~~~-~~L~~L~l~~c~~  337 (380)
                      +|++. ++++.+.. ...+ ++|++||++++++
T Consensus       457 lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             Eeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            88764 77766543 3345 6788888887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.54  E-value=1.8e-13  Score=133.91  Aligned_cols=253  Identities=26%  Similarity=0.328  Sum_probs=139.6

Q ss_pred             ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836            8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA   87 (380)
Q Consensus         8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~   87 (380)
                      -..|+++++ .++.+|. ...++|+.|.+.++. ++.+|..     .+.        |++|+++++ .++.+        
T Consensus       203 ~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~--------Lk~LdLs~N-~LtsL--------  257 (788)
T PRK15387        203 NAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPE--------LRTLEVSGN-QLTSL--------  257 (788)
T ss_pred             CcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCC--------CcEEEecCC-ccCcc--------
Confidence            456777775 5666665 234678888888765 6666532     234        888888775 44433        


Q ss_pred             cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC
Q 035836           88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG  167 (380)
Q Consensus        88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  167 (380)
                           +  .+|++|+.|++.+|. +..+|...   .+|+.|++++ +.+..+|..   +++|+.|++++ +.+..+|.. 
T Consensus       258 -----P--~lp~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~-N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l-  320 (788)
T PRK15387        258 -----P--VLPPGLLELSIFSNP-LTHLPALP---SGLCKLWIFG-NQLTSLPVL---PPGLQELSVSD-NQLASLPAL-  320 (788)
T ss_pred             -----c--CcccccceeeccCCc-hhhhhhch---hhcCEEECcC-Ccccccccc---ccccceeECCC-CccccCCCC-
Confidence                 1  123367777777764 55555432   4566777777 345555542   45677777776 355555432 


Q ss_pred             ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836          168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS  247 (380)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  247 (380)
                        ..+|+.|++.+| .++.+|..   ..+|+.|++++|. ++.+|.  .+++|+.|++++|.. ..++.       ...+
T Consensus       321 --p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~--lp~~L~~L~Ls~N~L-~~LP~-------l~~~  383 (788)
T PRK15387        321 --PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPT--LPSELYKLWAYNNRL-TSLPA-------LPSG  383 (788)
T ss_pred             --cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCC--CCcccceehhhcccc-ccCcc-------cccc
Confidence              125666666654 33344431   2356677776653 333432  245666666665542 22211       1235


Q ss_pred             cceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCccc
Q 035836          248 LRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSS  326 (380)
Q Consensus       248 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~  326 (380)
                      |+.|++++  +.+..++.          .+++|+.|++++ +.+..+|..   ..+|+.|++++ ++++.+|.. .-.++
T Consensus       384 L~~LdLs~--N~Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~  446 (788)
T PRK15387        384 LKELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSS  446 (788)
T ss_pred             cceEEecC--CcccCCCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccC
Confidence            66666665  34444443          234566666666 455555532   23455666665 556666542 11345


Q ss_pred             ccEEEecCch
Q 035836          327 LLELWIWDCP  336 (380)
Q Consensus       327 L~~L~l~~c~  336 (380)
                      |+.|++++|+
T Consensus       447 L~~LdLs~N~  456 (788)
T PRK15387        447 ETTVNLEGNP  456 (788)
T ss_pred             CCeEECCCCC
Confidence            6666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.50  E-value=7.1e-17  Score=140.76  Aligned_cols=263  Identities=26%  Similarity=0.349  Sum_probs=195.3

Q ss_pred             CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836           30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC  109 (380)
Q Consensus        30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~  109 (380)
                      -|.++.++++. +..+..+  ...+..        +..+.++.... ...      |.++     +.+- .++.+++++|
T Consensus        46 ~l~~lils~N~-l~~l~~d--l~nL~~--------l~vl~~~~n~l-~~l------p~ai-----g~l~-~l~~l~vs~n  101 (565)
T KOG0472|consen   46 DLQKLILSHND-LEVLRED--LKNLAC--------LTVLNVHDNKL-SQL------PAAI-----GELE-ALKSLNVSHN  101 (565)
T ss_pred             chhhhhhccCc-hhhccHh--hhcccc--------eeEEEeccchh-hhC------CHHH-----HHHH-HHHHhhcccc
Confidence            35556666665 4444433  344444        66677766432 222      3332     2333 5788888887


Q ss_pred             CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccc
Q 035836          110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPK  189 (380)
Q Consensus       110 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  189 (380)
                       .+..+|+.++++.+|..++.++ +....++++++.+..+..++..+ +.+..+|+++..+.++..+++.++ .++..|+
T Consensus       102 -~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~  177 (565)
T KOG0472|consen  102 -KLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPE  177 (565)
T ss_pred             -hHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCH
Confidence             4778888888888999999888 66777788888888888888877 678888888888888888888874 4555555


Q ss_pred             cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccc
Q 035836          190 GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKR  269 (380)
Q Consensus       190 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~  269 (380)
                      ..-+++.|++|+...+.-.+..+..+.+.+|+-|++..|..... +.     |.+|..|.+|+++.  +.++.++++.. 
T Consensus       178 ~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pe-----f~gcs~L~Elh~g~--N~i~~lpae~~-  248 (565)
T KOG0472|consen  178 NHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL-PE-----FPGCSLLKELHVGE--NQIEMLPAEHL-  248 (565)
T ss_pred             HHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC-CC-----CCccHHHHHHHhcc--cHHHhhHHHHh-
Confidence            55458899999888774433344568889999999999764433 32     78999999999987  78888888763 


Q ss_pred             ccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836          270 LGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL  337 (380)
Q Consensus       270 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~  337 (380)
                           ..++++..|++.+ ++++++|..+.-+.+|++|++++ +.++.+|.. +.. .|++|.+.|+|.
T Consensus       249 -----~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  249 -----KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             -----cccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence                 4789999999999 89999999999999999999998 788888772 223 688888888873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=3.7e-13  Score=131.76  Aligned_cols=237  Identities=30%  Similarity=0.398  Sum_probs=172.1

Q ss_pred             CCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836            6 SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL   85 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~   85 (380)
                      ++|+.|.+.++ .++.+|.  .+++|++|+++++. ++.+|..     .+.        |+.|+++++. +..+      
T Consensus       222 ~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~s--------L~~L~Ls~N~-L~~L------  277 (788)
T PRK15387        222 AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPG--------LLELSIFSNP-LTHL------  277 (788)
T ss_pred             cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccc--------cceeeccCCc-hhhh------
Confidence            36899999885 6777775  46899999999985 8877632     234        9999998863 4433      


Q ss_pred             CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC
Q 035836           86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE  165 (380)
Q Consensus        86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  165 (380)
                             +  .+|.+|+.|++++|. +..+|.   .+++|++|++++| .+..+|..   ..+|+.|++++ +.+..+|.
T Consensus       278 -------p--~lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~  339 (788)
T PRK15387        278 -------P--ALPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYN-NQLTSLPT  339 (788)
T ss_pred             -------h--hchhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC---ccccccccccc-Cccccccc
Confidence                   1  234479999999984 666665   3578999999984 66666642   34688888887 46676664


Q ss_pred             CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836          166 GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF  245 (380)
Q Consensus       166 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  245 (380)
                      .   ..+|+.|++++| .++.+|..   .++|+.|++++|. +..+|.  .+.+|+.|++++|... .++.       ..
T Consensus       340 l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~--l~~~L~~LdLs~N~Lt-~LP~-------l~  401 (788)
T PRK15387        340 L---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNRLT-SLPV-------LP  401 (788)
T ss_pred             c---ccccceEecCCC-ccCCCCCC---Ccccceehhhccc-cccCcc--cccccceEEecCCccc-CCCC-------cc
Confidence            2   247999999985 45566653   3578888888774 444553  3468999999998633 2221       23


Q ss_pred             CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc
Q 035836          246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK  316 (380)
Q Consensus       246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  316 (380)
                      ++|+.|++++  +.+..+|.          .+.+|+.|++++ +.++.+|..+.++++|+.|+++++ .++
T Consensus       402 s~L~~LdLS~--N~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N-~Ls  458 (788)
T PRK15387        402 SELKELMVSG--NRLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN-PLS  458 (788)
T ss_pred             cCCCEEEccC--CcCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC-CCC
Confidence            5799999998  56777774          345789999998 789999999999999999999984 454

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.44  E-value=5.9e-15  Score=141.18  Aligned_cols=243  Identities=23%  Similarity=0.298  Sum_probs=164.7

Q ss_pred             CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836           28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS  107 (380)
Q Consensus        28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  107 (380)
                      -++|+.|..++|. +..+...   ..-.+        |++++++.+. ++.+      |.     .+...+ +|+.++..
T Consensus       218 g~~l~~L~a~~n~-l~~~~~~---p~p~n--------l~~~dis~n~-l~~l------p~-----wi~~~~-nle~l~~n  272 (1081)
T KOG0618|consen  218 GPSLTALYADHNP-LTTLDVH---PVPLN--------LQYLDISHNN-LSNL------PE-----WIGACA-NLEALNAN  272 (1081)
T ss_pred             CcchheeeeccCc-ceeeccc---ccccc--------ceeeecchhh-hhcc------hH-----HHHhcc-cceEeccc
Confidence            4678888888777 4433221   12223        7778877542 2222      22     244555 68888888


Q ss_pred             cCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCcc------------------
Q 035836          108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP------------------  169 (380)
Q Consensus       108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~------------------  169 (380)
                      +|. +..+|..+....+|+.|.+.. +.+..+|+....+++|++|++.. +.+.++|+.+..                  
T Consensus       273 ~N~-l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~  349 (1081)
T KOG0618|consen  273 HNR-LVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLST  349 (1081)
T ss_pred             chh-HHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccc
Confidence            874 577777777777888887776 67777777777777888888876 455555542211                  


Q ss_pred             --------CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC--CCCCCceEEEecCCCCcchhhhhhc
Q 035836          170 --------CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWG  239 (380)
Q Consensus       170 --------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~  239 (380)
                              .+.|+.|.+.+|.......+.+.++.+|++|+|++| .++.+|..  ..+..|++|+|+||. ++.++..  
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t--  425 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDT--  425 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHH--
Confidence                    234555556655554444456788899999999998 45666644  567899999999986 4434422  


Q ss_pred             cccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCC
Q 035836          240 RGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKL  315 (380)
Q Consensus       240 ~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  315 (380)
                        +..++.|+.|...+  +.+..+|+ .       ..++.|+.+|++. +.+..+.. .....++|++|+++|++++
T Consensus       426 --va~~~~L~tL~ahs--N~l~~fPe-~-------~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  426 --VANLGRLHTLRAHS--NQLLSFPE-L-------AQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             --HHhhhhhHHHhhcC--Cceeechh-h-------hhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence              45788999999987  78888884 3       3889999999996 78876543 2222289999999997753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=7e-13  Score=130.43  Aligned_cols=242  Identities=23%  Similarity=0.376  Sum_probs=123.3

Q ss_pred             CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836            7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP   86 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   86 (380)
                      +...|++.+. .++.+|.. .++.|+.|+++++. ++.+|.. .+   .+        |+.|+++++. ++.+      |
T Consensus       179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~-l~---~n--------L~~L~Ls~N~-LtsL------P  236 (754)
T PRK15370        179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPEN-LQ---GN--------IKTLYANSNQ-LTSI------P  236 (754)
T ss_pred             CceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChh-hc---cC--------CCEEECCCCc-cccC------C
Confidence            4556666654 45555532 34567777777665 6666643 11   24        7777776642 3333      2


Q ss_pred             ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC
Q 035836           87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG  166 (380)
Q Consensus        87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  166 (380)
                      .        .++.+|+.|++++|. +..+|..+.  .+|+.|++++ +.+..+|..+.  ++|+.|++++ +.+..+|..
T Consensus       237 ~--------~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~  301 (754)
T PRK15370        237 A--------TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYD-NSIRTLPAH  301 (754)
T ss_pred             h--------hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCC-CccccCccc
Confidence            1        122357777777664 445555442  4667777765 44555555442  4677777766 355555543


Q ss_pred             CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836          167 GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS  246 (380)
Q Consensus       167 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  246 (380)
                      +.  ++|+.|++++|. +..+|..+  .++|+.|.+++|. ++.+|. ..+++|+.|++++|... .++..    +  .+
T Consensus       302 lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~-~l~~sL~~L~Ls~N~L~-~LP~~----l--p~  367 (754)
T PRK15370        302 LP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENA-LTSLPA-SLPPELQVLDVSKNQIT-VLPET----L--PP  367 (754)
T ss_pred             ch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCc-cccCCh-hhcCcccEEECCCCCCC-cCChh----h--cC
Confidence            32  256666666543 33344322  2456666666653 233332 12356666666665422 22111    1  24


Q ss_pred             ccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhh----ccCCCCceEeeec
Q 035836          247 SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSI----VDLQNLTILQLID  311 (380)
Q Consensus       247 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~l~~  311 (380)
                      +|+.|++++  +.+..+|...         +..|+.|++++ +.+..+|..+    ..++++..|++.+
T Consensus       368 ~L~~LdLs~--N~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~  424 (754)
T PRK15370        368 TITTLDVSR--NALTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEY  424 (754)
T ss_pred             CcCEEECCC--CcCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeC
Confidence            566666665  2444554422         23466666665 3555544322    2235555666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=1.1e-12  Score=129.16  Aligned_cols=247  Identities=21%  Similarity=0.336  Sum_probs=175.6

Q ss_pred             CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836           28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS  107 (380)
Q Consensus        28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  107 (380)
                      ..+..+|++++.. ++.+|.. .   .+.        |+.|+++++ .++.+             +...++ +|++|+++
T Consensus       177 ~~~~~~L~L~~~~-LtsLP~~-I---p~~--------L~~L~Ls~N-~LtsL-------------P~~l~~-nL~~L~Ls  228 (754)
T PRK15370        177 KNNKTELRLKILG-LTTIPAC-I---PEQ--------ITTLILDNN-ELKSL-------------PENLQG-NIKTLYAN  228 (754)
T ss_pred             ccCceEEEeCCCC-cCcCCcc-c---ccC--------CcEEEecCC-CCCcC-------------Chhhcc-CCCEEECC
Confidence            3567889998876 7777753 1   134        899999886 45544             222223 79999999


Q ss_pred             cCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccc
Q 035836          108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEAL  187 (380)
Q Consensus       108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  187 (380)
                      +|. +..+|..+.  ++|+.|++++| .+..+|..+.  .+|+.|++++ +.+..+|..+.  ++|+.|++++| .++.+
T Consensus       229 ~N~-LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~L  298 (754)
T PRK15370        229 SNQ-LTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTL  298 (754)
T ss_pred             CCc-cccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccC
Confidence            884 677776553  58999999985 5667887653  5899999987 67778876553  48999999986 45566


Q ss_pred             cccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccc
Q 035836          188 PKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED  267 (380)
Q Consensus       188 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~  267 (380)
                      |..+  .++|+.|++++|. ++.+|. ..+++|+.|++++|... .++..    +  .++|+.|++++  +.+..++.. 
T Consensus       299 P~~l--p~sL~~L~Ls~N~-Lt~LP~-~l~~sL~~L~Ls~N~Lt-~LP~~----l--~~sL~~L~Ls~--N~L~~LP~~-  364 (754)
T PRK15370        299 PAHL--PSGITHLNVQSNS-LTALPE-TLPPGLKTLEAGENALT-SLPAS----L--PPELQVLDVSK--NQITVLPET-  364 (754)
T ss_pred             cccc--hhhHHHHHhcCCc-cccCCc-cccccceeccccCCccc-cCChh----h--cCcccEEECCC--CCCCcCChh-
Confidence            6544  2478889999874 344443 23578999999998633 33321    2  36899999998  456677753 


Q ss_pred             ccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-----CCcccccEEEecCchhH
Q 035836          268 KRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-----GLPSSLLELWIWDCPLI  338 (380)
Q Consensus       268 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~c~~l  338 (380)
                              .+++|++|++++ +.+..+|..+.  .+|+.|++++ ++++.+|..     ...+.+..|++.+++.-
T Consensus       365 --------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        365 --------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                    347899999999 57888887554  3699999998 678887762     11357889999998753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.42  E-value=1.2e-14  Score=126.79  Aligned_cols=282  Identities=18%  Similarity=0.238  Sum_probs=172.4

Q ss_pred             CCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCC
Q 035836           18 SLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNL   97 (380)
Q Consensus        18 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~   97 (380)
                      +++++|. ..++.-.+++|..+. |+.+|.+ .|..+++        |+.|+++.+ .++.+.     |+     .+.++
T Consensus        57 GL~eVP~-~LP~~tveirLdqN~-I~~iP~~-aF~~l~~--------LRrLdLS~N-~Is~I~-----p~-----AF~GL  114 (498)
T KOG4237|consen   57 GLTEVPA-NLPPETVEIRLDQNQ-ISSIPPG-AFKTLHR--------LRRLDLSKN-NISFIA-----PD-----AFKGL  114 (498)
T ss_pred             CcccCcc-cCCCcceEEEeccCC-cccCChh-hccchhh--------hceeccccc-chhhcC-----hH-----hhhhh
Confidence            3444442 345667778887776 8888877 7777777        888888764 344331     11     34555


Q ss_pred             CCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCE
Q 035836           98 PPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTR  175 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  175 (380)
                      + +|.+|-++++..++.+|. .|+.+..|+.|.+..|...-.....+..++++..|.+.+ +.++.+.. .+..+..+++
T Consensus       115 ~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~t  192 (498)
T KOG4237|consen  115 A-SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKT  192 (498)
T ss_pred             H-hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccch
Confidence            5 577777777666777765 566777777777766333222334466677777777776 55666665 3445667777


Q ss_pred             EeccCCCCccc--c----------cccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEE--EecCCCCcchhhhhhccc
Q 035836          176 LDIYDCERLEA--L----------PKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL--EIDGNMEIWKSTIEWGRG  241 (380)
Q Consensus       176 L~l~~~~~~~~--~----------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L--~l~~~~~~~~~~~~~~~~  241 (380)
                      +++..+..+..  +          |-.++.+.......+.+.. +.........-.++.+  .+.+......+.+.-.  
T Consensus       193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c--  269 (498)
T KOG4237|consen  193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKC--  269 (498)
T ss_pred             HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHH--
Confidence            77776553221  1          1011111111111111110 0111111111112222  2222233333333333  


Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      |.++++|++|++++  +.++.+.+.+      +.....++.|++.. ++++.+.. .|.++..|+.|++++ ++++.+.+
T Consensus       270 f~~L~~L~~lnlsn--N~i~~i~~~a------Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~  339 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSN--NKITRIEDGA------FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP  339 (498)
T ss_pred             HhhcccceEeccCC--Cccchhhhhh------hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEec
Confidence            78999999999998  7888877655      36778999999999 79998877 899999999999999 89999988


Q ss_pred             CCC--cccccEEEecCch
Q 035836          321 KGL--PSSLLELWIWDCP  336 (380)
Q Consensus       321 ~~~--~~~L~~L~l~~c~  336 (380)
                      +.+  ..+|.+|.+-.+|
T Consensus       340 ~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ccccccceeeeeehccCc
Confidence            766  3478888775443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.41  E-value=4.9e-15  Score=130.03  Aligned_cols=300  Identities=18%  Similarity=0.264  Sum_probs=150.6

Q ss_pred             CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836           30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC  109 (380)
Q Consensus        30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~  109 (380)
                      .|++|++.+|....+-+...+...+++        ++.|.+.+|.++++.        ++.  .++.+..+|+.|++..|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~Cpn--------IehL~l~gc~~iTd~--------s~~--sla~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPN--------IEHLALYGCKKITDS--------SLL--SLARYCRKLRHLNLHSC  200 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCc--------hhhhhhhcceeccHH--------HHH--HHHHhcchhhhhhhccc
Confidence            355566666655444443323334444        666666666554432        111  22333334666666665


Q ss_pred             CChhhh--HhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEccccccce--eccCCCccCCCCCEEeccCCCC
Q 035836          110 SKLESI--AERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLV--SFTEGGLPCAKLTRLDIYDCER  183 (380)
Q Consensus       110 ~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~  183 (380)
                      ..++..  ......+++|++|++++|..+..  +......+..++.+...+|....  .+......++.+.++++..|..
T Consensus       201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence            555422  22334566666666666555433  11112234444444444443221  1111122234455555445544


Q ss_pred             ccccc--ccCCCCCCccEEEeccCCCCCCCCC---CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836          184 LEALP--KGLHNLTSLQELTIGKGVELPSLEE---DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD  258 (380)
Q Consensus       184 ~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  258 (380)
                      +++..  ..-..+..|+.|..++|..++..+.   ...+.+|+.+-+++|..+++......  -.+++.|+.+++.+ |.
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~-~~  357 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEE-CG  357 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccc-cc
Confidence            44321  1113455666666666665554332   14556777777777765554443222  33566777777766 43


Q ss_pred             CCcccccccccccCCCCCCCCcceEecccCCCccch-----hhhhccCCCCceEeeecCCCCcccCCCC--CcccccEEE
Q 035836          259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-----SSSIVDLQNLTILQLIDCPKLKYFPEKG--LPSSLLELW  331 (380)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~  331 (380)
                      ....-.     +.+.-..++.|+.|.+++|..+++-     .....++..|+.+++++|+.+++-..+.  ..++|+.++
T Consensus       358 ~~~d~t-----L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~  432 (483)
T KOG4341|consen  358 LITDGT-----LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE  432 (483)
T ss_pred             eehhhh-----HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence            332211     1111246677777777777666544     2234455667778888877776633322  245777888


Q ss_pred             ecCchhHHHHhhccCCCCCccccCcCeeEE
Q 035836          332 IWDCPLIEEKCRKDGGQYWNLLTHIPYVSI  361 (380)
Q Consensus       332 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~  361 (380)
                      +.+|..+........      .+|.|.+++
T Consensus       433 l~~~q~vtk~~i~~~------~~~lp~i~v  456 (483)
T KOG4341|consen  433 LIDCQDVTKEAISRF------ATHLPNIKV  456 (483)
T ss_pred             eechhhhhhhhhHHH------HhhCcccee
Confidence            888877765433322      235555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=2.9e-14  Score=125.22  Aligned_cols=294  Identities=17%  Similarity=0.218  Sum_probs=206.5

Q ss_pred             CccEEEEecCCCCccccC---CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836            7 SLEILEIWVCHSLTYIAG---VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN   83 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   83 (380)
                      .|+.|.++||..+..-+.   ...||+++.|.+.+|.++++......-..+.+        |+.|++..|..+++.    
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~--------l~~l~L~~c~~iT~~----  206 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRK--------LRHLNLHSCSSITDV----  206 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcch--------hhhhhhcccchhHHH----
Confidence            589999999987655333   34599999999999998877654445567777        999999999988876    


Q ss_pred             CCCccccccccCCCCCCccEEEEecCCChhh--hHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEcccccc
Q 035836           84 ELPATLESLEVGNLPPSLRSLYVSHCSKLES--IAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECEN  159 (380)
Q Consensus        84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~  159 (380)
                          .+.+ -..++| +|++|++++|+.+..  +......+..++.+..++|...+.  +-..-..+.-+..+++..|..
T Consensus       207 ----~Lk~-la~gC~-kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  207 ----SLKY-LAEGCR-KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             ----HHHH-HHHhhh-hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence                1111 134677 699999999987763  444555677788887788766542  211122345566777777766


Q ss_pred             ceeccC--CCccCCCCCEEeccCCCCccccc--ccCCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcc
Q 035836          160 LVSFTE--GGLPCAKLTRLDIYDCERLEALP--KGLHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIW  232 (380)
Q Consensus       160 l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~  232 (380)
                      ++....  ....+..|+.+..++|..+++.+  .-..+.++|+.|-+..|..++..-   ....++.|+.+++.+|....
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence            654321  11236789999999887766433  223578899999999998766532   22578899999999998766


Q ss_pred             hhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836          233 KSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID  311 (380)
Q Consensus       233 ~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~  311 (380)
                      +-.....  ..+++.|+.|.+++ |..+++.  ++.++...-.....|+.+.+++|+.+++-.- .+..+++|+++++.+
T Consensus       361 d~tL~sl--s~~C~~lr~lslsh-ce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  361 DGTLASL--SRNCPRLRVLSLSH-CELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             hhhHhhh--ccCCchhccCChhh-hhhhhhh--hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            5532222  56899999999999 7776554  1222222224667899999999998876543 778899999999999


Q ss_pred             CCCCcccCCCCC
Q 035836          312 CPKLKYFPEKGL  323 (380)
Q Consensus       312 c~~l~~~~~~~~  323 (380)
                      |..++.-+...+
T Consensus       436 ~q~vtk~~i~~~  447 (483)
T KOG4341|consen  436 CQDVTKEAISRF  447 (483)
T ss_pred             hhhhhhhhhHHH
Confidence            988877554334

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=6.1e-14  Score=108.89  Aligned_cols=155  Identities=23%  Similarity=0.321  Sum_probs=105.8

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      ++..|.+++| .+..+|+.+..+.+|+.|++.+ +.++.+|..+..++.|++|+++- +++..+|.+++.+|.|+.|+++
T Consensus        34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence            5777888887 4777888888888888888886 67778888888888888888865 6777888888888888888888


Q ss_pred             CCCCc-ccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836          180 DCERL-EALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD  258 (380)
Q Consensus       180 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  258 (380)
                      +|... ..+|..|..++.|+.|+++++...-..+..+..++|+.|.+.++..+.-...     ++.+..|++|++.+  +
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-----ig~lt~lrelhiqg--n  183 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-----IGDLTRLRELHIQG--N  183 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-----HHHHHHHHHHhccc--c
Confidence            76543 3566666667778888888774433223345556666666666554432222     33455555666655  3


Q ss_pred             CCcccc
Q 035836          259 DMVSFP  264 (380)
Q Consensus       259 ~l~~~~  264 (380)
                      .+..+|
T Consensus       184 rl~vlp  189 (264)
T KOG0617|consen  184 RLTVLP  189 (264)
T ss_pred             eeeecC
Confidence            444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.26  E-value=1.6e-12  Score=117.72  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=16.3

Q ss_pred             CCcceEecccCCCcc-----chhhhhccCCCCceEeeec
Q 035836          278 ASLTSLWIEDFPNLE-----RLSSSIVDLQNLTILQLID  311 (380)
Q Consensus       278 ~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~  311 (380)
                      +.|++|++++| .++     .+...+..+++|+++++++
T Consensus       250 ~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         250 ISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             CCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCC
Confidence            45666666553 332     2222344445566666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.20  E-value=4.2e-13  Score=104.26  Aligned_cols=159  Identities=24%  Similarity=0.392  Sum_probs=117.9

Q ss_pred             CCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEE
Q 035836          121 NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL  200 (380)
Q Consensus       121 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  200 (380)
                      ++.+++.|.+++ +.+..+|+.+..+.+|+.|++++ +.++++|..+.++++|+.|+++. ..+..+|.+|+.++.|++|
T Consensus        31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence            467788888988 67777888999999999999998 78999999999999999999986 5677789999999999999


Q ss_pred             EeccCCC-CCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCC
Q 035836          201 TIGKGVE-LPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS  279 (380)
Q Consensus       201 ~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (380)
                      ++.++.- ...+|              |+             |-.+..|+-|.++.  +.++.+|.+.       ..+++
T Consensus       108 dltynnl~e~~lp--------------gn-------------ff~m~tlralyl~d--ndfe~lp~dv-------g~lt~  151 (264)
T KOG0617|consen  108 DLTYNNLNENSLP--------------GN-------------FFYMTTLRALYLGD--NDFEILPPDV-------GKLTN  151 (264)
T ss_pred             hccccccccccCC--------------cc-------------hhHHHHHHHHHhcC--CCcccCChhh-------hhhcc
Confidence            9987632 11222              11             22345556666655  5556666655       36667


Q ss_pred             cceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836          280 LTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       280 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      |+.|.+.+ +.+-++|..+..+..|+.|.|.+ +.++-+|.
T Consensus       152 lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp  190 (264)
T KOG0617|consen  152 LQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP  190 (264)
T ss_pred             eeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence            77777776 56666777777777777777777 66666655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.08  E-value=4.8e-11  Score=108.07  Aligned_cols=164  Identities=18%  Similarity=0.097  Sum_probs=82.4

Q ss_pred             CCccEEEeccCCCCCC----CC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccc
Q 035836          195 TSLQELTIGKGVELPS----LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKR  269 (380)
Q Consensus       195 ~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~  269 (380)
                      ++|+.|++++|.....    +. ....+++|++|++++|...........+.+..+++|+.|++++ | .+.....  ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n-~i~~~~~--~~  212 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-N-GLTDEGA--SA  212 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-C-ccChHHH--HH
Confidence            5666666666542211    00 1123456777777776533211111111134556888888887 4 2321111  11


Q ss_pred             ccCCCCCCCCcceEecccCCCccch--hhhhc----cCCCCceEeeecCCCCcc-----cCC-CCCcccccEEEecCchh
Q 035836          270 LGTALPLPASLTSLWIEDFPNLERL--SSSIV----DLQNLTILQLIDCPKLKY-----FPE-KGLPSSLLELWIWDCPL  337 (380)
Q Consensus       270 ~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~----~~~~L~~L~l~~c~~l~~-----~~~-~~~~~~L~~L~l~~c~~  337 (380)
                      +...+..+++|++|++++| .+...  .....    ..+.|++|++.+| .+++     +.. ....++|+++++++|.-
T Consensus       213 l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         213 LAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            1112246678999999885 45432  11122    2478999999986 4432     111 01125799999998765


Q ss_pred             HHHHhhccCCCCCccc-cCcCeeEECcee
Q 035836          338 IEEKCRKDGGQYWNLL-THIPYVSIDYKW  365 (380)
Q Consensus       338 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  365 (380)
                      -.+.+.. ....+... .++..+.|++++
T Consensus       291 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         291 GEEGAQL-LAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cHHHHHH-HHHHHhhcCCchhhcccCCCC
Confidence            5442211 11122222 456666666544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.03  E-value=8.6e-11  Score=117.67  Aligned_cols=266  Identities=24%  Similarity=0.214  Sum_probs=148.5

Q ss_pred             ccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCC-cccccccCCCCccccccccCCCCCC
Q 035836           22 IAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRS-LTCIFSKNELPATLESLEVGNLPPS  100 (380)
Q Consensus        22 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~  100 (380)
                      ++........++..+.+.. +..++..   ..++.        |.+|-+.+... +...      +..    .+..+| .
T Consensus       516 ~~~~~~~~~~rr~s~~~~~-~~~~~~~---~~~~~--------L~tLll~~n~~~l~~i------s~~----ff~~m~-~  572 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNK-IEHIAGS---SENPK--------LRTLLLQRNSDWLLEI------SGE----FFRSLP-L  572 (889)
T ss_pred             cccccchhheeEEEEeccc-hhhccCC---CCCCc--------cceEEEeecchhhhhc------CHH----HHhhCc-c
Confidence            4444445667777776655 4444432   33334        77777766432 2211      000    144566 5


Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD  180 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  180 (380)
                      |+.|++++|..+..+|..++.+-+|++|++++ ..+..+|.++.++..|.+|++..+..+..++.....+++|++|.+..
T Consensus       573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            88888888888888888888888888888888 67778888888888888888887666555544444478888888765


Q ss_pred             CC-Ccc-cccccCCCCCCccEEEeccCCCCCCCCCCCCCCCce----EEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836          181 CE-RLE-ALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLH----SLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS  254 (380)
Q Consensus       181 ~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  254 (380)
                      .. ..+ ..-..+..+.+|+.+....... ..+.....+..|.    .+.+.++...+....     +..+.+|+.|.+.
T Consensus       652 s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~-----~~~l~~L~~L~i~  725 (889)
T KOG4658|consen  652 SALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS-----LGSLGNLEELSIL  725 (889)
T ss_pred             cccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecc-----cccccCcceEEEE
Confidence            33 111 1112234555666665544322 1111111222222    223222322222222     5567788888888


Q ss_pred             cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836          255 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      + |...+.......... ....++++..+.+.+|...+.+. ...-.|+|++|.+.+|+.+.++.+
T Consensus       726 ~-~~~~e~~~~~~~~~~-~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  726 D-CGISEIVIEWEESLI-VLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             c-CCCchhhcccccccc-hhhhHHHHHHHHhhccccccccc-hhhccCcccEEEEecccccccCCC
Confidence            7 555432221100000 00013345555555555554432 233447788888888887777554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=4.5e-10  Score=112.62  Aligned_cols=254  Identities=21%  Similarity=0.214  Sum_probs=154.0

Q ss_pred             CccEEEEecCCCCccccCCCCCCCCceEeecCCcC-ccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836            7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDN-IRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL   85 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~   85 (380)
                      ..+.+.+-++ ....++....++.|++|-+.+... +..++.+ +|..++.        |+.|++++|..+..+      
T Consensus       524 ~~rr~s~~~~-~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~-ff~~m~~--------LrVLDLs~~~~l~~L------  587 (889)
T KOG4658|consen  524 SVRRMSLMNN-KIEHIAGSSENPKLRTLLLQRNSDWLLEISGE-FFRSLPL--------LRVLDLSGNSSLSKL------  587 (889)
T ss_pred             heeEEEEecc-chhhccCCCCCCccceEEEeecchhhhhcCHH-HHhhCcc--------eEEEECCCCCccCcC------
Confidence            3455555442 444555556678899999988763 6666665 6888888        999999998776655      


Q ss_pred             CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceecc-
Q 035836           86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFT-  164 (380)
Q Consensus        86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-  164 (380)
                      |..+     +.+- +|++|+++++ .+..+|..+.++.+|.+|++..+..+..+|.....+.+|++|.+.... ..... 
T Consensus       588 P~~I-----~~Li-~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~  659 (889)
T KOG4658|consen  588 PSSI-----GELV-HLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKL  659 (889)
T ss_pred             ChHH-----hhhh-hhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchh
Confidence            5544     4445 7999999997 488999999999999999999877777776666669999999887632 11111 


Q ss_pred             --CCCccCCCCCEEeccCCCCcccccccCCCCCCcc----EEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhh
Q 035836          165 --EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQ----ELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEW  238 (380)
Q Consensus       165 --~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  238 (380)
                        .....+.+|+.+.......  .+...+..++.|.    .+.+..+...+.......+.+|+.|.+.+|........ +
T Consensus       660 ~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~-~  736 (889)
T KOG4658|consen  660 LLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE-W  736 (889)
T ss_pred             hHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc-c
Confidence              1122234444444432211  1111122222322    33333333333444556777888888888776432211 1


Q ss_pred             ccc--cC-CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh
Q 035836          239 GRG--FH-RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS  296 (380)
Q Consensus       239 ~~~--~~-~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  296 (380)
                      ...  .. .++++..+.+.+ |..........        ++++|+.|++..|..++....
T Consensus       737 ~~~~~~~~~f~~l~~~~~~~-~~~~r~l~~~~--------f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  737 EESLIVLLCFPNLSKVSILN-CHMLRDLTWLL--------FAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             ccccchhhhHHHHHHHHhhc-cccccccchhh--------ccCcccEEEEecccccccCCC
Confidence            000  11 144555556655 55555544332        667788888887776665533

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.90  E-value=3e-11  Score=105.83  Aligned_cols=257  Identities=16%  Similarity=0.196  Sum_probs=149.6

Q ss_pred             CCCCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcc-cccccCCCCCcEEEccccccceeccCCCc-cCC
Q 035836           95 GNLPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKIL-PSGLHNLRQLQKIEIWECENLVSFTEGGL-PCA  171 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~  171 (380)
                      ..+|.+-.++++..|. ++.+| .+|+.+++|+.|+++.| .++.+ |..+..++++..|.+.+.++++.++.+.+ .+.
T Consensus        63 ~~LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   63 ANLPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             ccCCCcceEEEeccCC-cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            4455578899999885 66554 57889999999999984 44444 56677888988888888788999887543 466


Q ss_pred             CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhc--------ccc
Q 035836          172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWG--------RGF  242 (380)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--------~~~  242 (380)
                      +++.|.+..|...-...+.++.++++..|.+.++.....-. .......++++++..++.+-.....|.        -.+
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence            77777776654433333567788888888888774322221 234566777777777663222111110        001


Q ss_pred             CCCCccceeeee------------------------cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-h
Q 035836          243 HRFSSLRRLAIS------------------------GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-S  297 (380)
Q Consensus       243 ~~~~~L~~L~l~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~  297 (380)
                      +++.......+.                        +.|.....-|..      .+..+++|+.|++++ +.++.+.. +
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~------cf~~L~~L~~lnlsn-N~i~~i~~~a  293 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK------CFKKLPNLRKLNLSN-NKITRIEDGA  293 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH------HHhhcccceEeccCC-Cccchhhhhh
Confidence            111111111111                        101111111111      134567777777777 66666644 6


Q ss_pred             hccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceee
Q 035836          298 IVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWV  366 (380)
Q Consensus       298 ~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (380)
                      |.....++.|.+.. +++..+..+.+  .+.|+.|+++++..-+     .....|+....+..+++-.+++
T Consensus       294 Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~-----~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  294 FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITT-----VAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEE-----EecccccccceeeeeehccCcc
Confidence            77777777777777 66666655444  4567777777643322     1222344444455555544443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=9.6e-10  Score=97.77  Aligned_cols=207  Identities=18%  Similarity=0.174  Sum_probs=135.3

Q ss_pred             CccEEEEecCCChhhhH--hhccCCCCccEEeecCCCCCCcc---cccccCCCCCcEEEccccccceeccCCC--ccCCC
Q 035836          100 SLRSLYVSHCSKLESIA--ERLDNNTSLETIDISNCESLKIL---PSGLHNLRQLQKIEIWECENLVSFTEGG--LPCAK  172 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~~  172 (380)
                      +|+++.+.++. +...+  .....|++++.|+++. +.+..+   -..+..+|+|+.|+++. +.+.......  ..+++
T Consensus       122 kL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  122 KLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhh
Confidence            47788887764 44333  3556788888888888 444332   22345688888888887 4444332211  23568


Q ss_pred             CCEEeccCCCCc-ccccccCCCCCCccEEEeccCCCCCC-CCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836          173 LTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPS-LEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR  250 (380)
Q Consensus       173 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  250 (380)
                      |+.|.++.|-.. .++-.....+|+|+.|++..|..... ......+..|++|+|++|..+...-...   .+.++.|+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~---~~~l~~L~~  275 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK---VGTLPGLNQ  275 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc---cccccchhh
Confidence            889988887543 23333445688999999998853222 2233567889999999988765442211   667899999


Q ss_pred             eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh--hhccCCCCceEeeecCCCCc
Q 035836          251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCPKLK  316 (380)
Q Consensus       251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~  316 (380)
                      |.++.  .++.++..-.+.-......+++|++|.+.. +.+..|+.  .+..+++|+.|.+.. +.+.
T Consensus       276 Lnls~--tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~-n~ln  339 (505)
T KOG3207|consen  276 LNLSS--TGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL-NYLN  339 (505)
T ss_pred             hhccc--cCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc-cccc
Confidence            99987  455554432222223345788999999998 78877776  677778888888775 4443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.1e-08  Score=91.14  Aligned_cols=57  Identities=21%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             CccEEEEecCCCh-hhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccc
Q 035836          100 SLRSLYVSHCSKL-ESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWE  156 (380)
Q Consensus       100 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  156 (380)
                      .|+.|.++.|..- +.+...+..+|+|+.|.+.+|..+.........+..|+.|++++
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN  255 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence            4666666665422 23444444556666666665432221111112244555555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.56  E-value=5.8e-07  Score=81.66  Aligned_cols=94  Identities=27%  Similarity=0.527  Sum_probs=60.7

Q ss_pred             ccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCcc
Q 035836          119 LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQ  198 (380)
Q Consensus       119 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  198 (380)
                      +..+.+++.|++++| .+..+|. +  ..+|+.|.+++|..+..+|..+  .++|+.|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445688899999986 6777772 2  3468889988888887777544  24788888888766665554      466


Q ss_pred             EEEeccCCCCCCCCCCCCCCCceEEEecC
Q 035836          199 ELTIGKGVELPSLEEDGLPTNLHSLEIDG  227 (380)
Q Consensus       199 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  227 (380)
                      .|.+..+.. ..+  ...+++|+.|.+.+
T Consensus       116 ~L~L~~n~~-~~L--~~LPssLk~L~I~~  141 (426)
T PRK15386        116 SLEIKGSAT-DSI--KNVPNGLTSLSINS  141 (426)
T ss_pred             eEEeCCCCC-ccc--ccCcchHhheeccc
Confidence            666653221 111  12455677777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.52  E-value=4.6e-08  Score=83.32  Aligned_cols=129  Identities=19%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCcccee
Q 035836          172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL  251 (380)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L  251 (380)
                      .|+++++++| .++.+-+++.-.|.++.|+++.|.. ..+.....+++|..|++++|.......  |   -.++-|++.|
T Consensus       285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v~nLa~L~~L~~LDLS~N~Ls~~~G--w---h~KLGNIKtL  357 (490)
T KOG1259|consen  285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTVQNLAELPQLQLLDLSGNLLAECVG--W---HLKLGNIKTL  357 (490)
T ss_pred             hhhhcccccc-chhhhhhhhhhccceeEEeccccce-eeehhhhhcccceEeecccchhHhhhh--h---HhhhcCEeee
Confidence            4556666653 3333334444455666666666532 223334555666666666654222111  2   2245567777


Q ss_pred             eeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh--hhccCCCCceEeeecCCCCcccC
Q 035836          252 AISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCPKLKYFP  319 (380)
Q Consensus       252 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~  319 (380)
                      .+++  +.++++..-.        .+-+|.+|++++ +.++.+..  .+.++|.|+++.+.++| +..++
T Consensus       358 ~La~--N~iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v  415 (490)
T KOG1259|consen  358 KLAQ--NKIETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV  415 (490)
T ss_pred             ehhh--hhHhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence            7776  4555555432        556777778777 67766654  77788888888888743 44433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=6.8e-09  Score=88.13  Aligned_cols=181  Identities=15%  Similarity=0.134  Sum_probs=110.0

Q ss_pred             CCccEEeecCCCCCC--cccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc--ccCCCCCCcc
Q 035836          123 TSLETIDISNCESLK--ILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP--KGLHNLTSLQ  198 (380)
Q Consensus       123 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~  198 (380)
                      ..|++|+++. ..++  ++...+..+.+|+-|.+.+..--..+...+..-..|+.+++++|.+++...  -.+.+++.|.
T Consensus       185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            3577777776 3322  222234456666666666532112222233344578888888877776532  1346788888


Q ss_pred             EEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcchhhh-hhccccCCCCccceeeeecCCCCCcccccccccccCCC
Q 035836          199 ELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTI-EWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTAL  274 (380)
Q Consensus       199 ~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~  274 (380)
                      .|++++|...+..-   ..+....|+.|+++|+...-.... +..  ...+|+|.+|+++. |..++.--.      +.+
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL--~~rcp~l~~LDLSD-~v~l~~~~~------~~~  334 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL--VRRCPNLVHLDLSD-SVMLKNDCF------QEF  334 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH--HHhCCceeeecccc-ccccCchHH------HHH
Confidence            88888886544331   124456888888888864322221 111  35789999999998 666554211      112


Q ss_pred             CCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836          275 PLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       275 ~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  313 (380)
                      ..++-|++|.++.|..+..-.. .+...|+|.+|++.+|-
T Consensus       335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            4677899999999877653222 67778899999999873

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.44  E-value=6.1e-09  Score=95.72  Aligned_cols=100  Identities=20%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCC
Q 035836          102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDC  181 (380)
Q Consensus       102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  181 (380)
                      ...+++.|. ...+|..+..+..|+.+.++. +.+..+|..+.++..|+.++++. +.++.+|..++.| -|+.+.+++ 
T Consensus        78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN-  152 (722)
T KOG0532|consen   78 VFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN-  152 (722)
T ss_pred             hhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-
Confidence            344555553 556666666666677777766 55666666666777777777766 5666777666655 366666664 


Q ss_pred             CCcccccccCCCCCCccEEEeccCC
Q 035836          182 ERLEALPKGLHNLTSLQELTIGKGV  206 (380)
Q Consensus       182 ~~~~~~~~~l~~~~~L~~L~l~~~~  206 (380)
                      ..++.+|..++....|..|+.+.|.
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNE  177 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhh
Confidence            4566666666656666666666553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.43  E-value=2.3e-07  Score=86.66  Aligned_cols=170  Identities=23%  Similarity=0.331  Sum_probs=95.4

Q ss_pred             CCCccEEeecCCCCCCcccccccCCC-CCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEE
Q 035836          122 NTSLETIDISNCESLKILPSGLHNLR-QLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL  200 (380)
Q Consensus       122 l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  200 (380)
                      .+.+..|.+.+ +.+..++....... +|+.|++++ +.+..++.....++.|+.|++++| .+.++|......++|+.|
T Consensus       115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence            45666666665 45555555444443 666666666 455565545555666666666653 334444433356666666


Q ss_pred             EeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCC
Q 035836          201 TIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS  279 (380)
Q Consensus       201 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (380)
                      +++++. +..++.. ..+..|+++.++++........     +..+.++..+.+.+  +.+..++...       ..++.
T Consensus       192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~--n~~~~~~~~~-------~~l~~  256 (394)
T COG4886         192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSS-----LSNLKNLSGLELSN--NKLEDLPESI-------GNLSN  256 (394)
T ss_pred             eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchh-----hhhcccccccccCC--ceeeeccchh-------ccccc
Confidence            666653 3333333 3445567777766653333332     44555566665544  3444433322       35566


Q ss_pred             cceEecccCCCccchhhhhccCCCCceEeeec
Q 035836          280 LTSLWIEDFPNLERLSSSIVDLQNLTILQLID  311 (380)
Q Consensus       280 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  311 (380)
                      ++.|++++ +.+..++. +....+++.|++++
T Consensus       257 l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         257 LETLDLSN-NQISSISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             cceecccc-cccccccc-ccccCccCEEeccC
Confidence            77777776 56666664 66667777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.41  E-value=6.2e-08  Score=82.53  Aligned_cols=100  Identities=23%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      .|+++++++| .++.+-++..-.|+++.|+++. +.+..+. .+..+++|+.|++++ +.+..+..--..+.++++|.++
T Consensus       285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~-N~i~~v~-nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQ-NRIRTVQ-NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhcccccc-chhhhhhhhhhccceeEEeccc-cceeeeh-hhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence            4888899887 4777777888888999999988 4444433 366788888888887 4555443322345677777777


Q ss_pred             CCCCcccccccCCCCCCccEEEeccC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      +|. +.++ .+++.+.+|..|++.+|
T Consensus       361 ~N~-iE~L-SGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  361 QNK-IETL-SGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             hhh-Hhhh-hhhHhhhhheecccccc
Confidence            642 2222 24455555666666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=7.7e-09  Score=87.80  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=12.0

Q ss_pred             CCCceEeecCCcCccccccccceecCCC
Q 035836           29 PSLKQLRISDCDNIRTLTVEEGIQSSSS   56 (380)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~   56 (380)
                      .+|+.|++++|..+......-++.++..
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhh
Confidence            4444444444444443333333444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.34  E-value=3.1e-07  Score=74.26  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=11.2

Q ss_pred             CCCcceEecccCCCccchhh--hhccCCCCceEeeecC
Q 035836          277 PASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDC  312 (380)
Q Consensus       277 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c  312 (380)
                      +++|++|++++ +.+.++..  .+..+++|+.|++.++
T Consensus        87 lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   87 LPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             -TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             CCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCC
Confidence            34555555554 44444332  3445555555555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.29  E-value=4.6e-06  Score=75.88  Aligned_cols=166  Identities=23%  Similarity=0.373  Sum_probs=110.6

Q ss_pred             ccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceE
Q 035836          143 LHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHS  222 (380)
Q Consensus       143 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  222 (380)
                      +..+.+++.|++++| .+..+|.  . .++|++|.+.+|..+..+|..+  .++|+.|.+++|..+..+     +.+|+.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~--L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV--L-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC--C-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccce
Confidence            445789999999997 7888872  2 2479999999999988888755  358999999998665543     567999


Q ss_pred             EEecCCCCcchhhhhhccccCCC-CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccC
Q 035836          223 LEIDGNMEIWKSTIEWGRGFHRF-SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDL  301 (380)
Q Consensus       223 L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~  301 (380)
                      |++.++.. ..        +..+ ++|+.|.+.+ +..........       ..+++|++|++++|..+. +|..+.  
T Consensus       117 L~L~~n~~-~~--------L~~LPssLk~L~I~~-~n~~~~~~lp~-------~LPsSLk~L~Is~c~~i~-LP~~LP--  176 (426)
T PRK15386        117 LEIKGSAT-DS--------IKNVPNGLTSLSINS-YNPENQARIDN-------LISPSLKTLSLTGCSNII-LPEKLP--  176 (426)
T ss_pred             EEeCCCCC-cc--------cccCcchHhheeccc-ccccccccccc-------ccCCcccEEEecCCCccc-Cccccc--
Confidence            99875432 11        2223 4688888864 22111111111       366899999999986543 443333  


Q ss_pred             CCCceEeeecCCCC-cccCCCCCcccccEEEecCchhHHH
Q 035836          302 QNLTILQLIDCPKL-KYFPEKGLPSSLLELWIWDCPLIEE  340 (380)
Q Consensus       302 ~~L~~L~l~~c~~l-~~~~~~~~~~~L~~L~l~~c~~l~~  340 (380)
                      .+|+.|.++.+... ..++...+++++ .|++.+|-++..
T Consensus       177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~  215 (426)
T PRK15386        177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP  215 (426)
T ss_pred             ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence            68999999764211 123444567778 888888865544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.24  E-value=5.5e-07  Score=84.12  Aligned_cols=174  Identities=22%  Similarity=0.266  Sum_probs=122.2

Q ss_pred             CCCCCCccEEEEecCCChhhhHhhccCCC-CccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           95 GNLPPSLRSLYVSHCSKLESIAERLDNNT-SLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      ..+. .++.|.+.++ .+..++....... +|+.|++++ +.+..+|..+..+++|+.|++++ +.+.+++......+.|
T Consensus       113 ~~~~-~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L  188 (394)
T COG4886         113 LELT-NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hccc-ceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhh
Confidence            3444 5888888876 4777777777674 899999988 67777766677888999999988 5777777765556788


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI  253 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  253 (380)
                      +.++++++ .+..+|..+.....|+.+.+.++..............+..+.+.++........     +..+++++.|++
T Consensus       189 ~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-----~~~l~~l~~L~~  262 (394)
T COG4886         189 NNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-----IGNLSNLETLDL  262 (394)
T ss_pred             hheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-----hccccccceecc
Confidence            88988874 555666554455568888888875444444455666777777666543321111     567788889998


Q ss_pred             ecCCCCCcccccccccccCCCCCCCCcceEecccC
Q 035836          254 SGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF  288 (380)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  288 (380)
                      ++  +.+.+++. .       ....++++|++++.
T Consensus       263 s~--n~i~~i~~-~-------~~~~~l~~L~~s~n  287 (394)
T COG4886         263 SN--NQISSISS-L-------GSLTNLRELDLSGN  287 (394)
T ss_pred             cc--cccccccc-c-------cccCccCEEeccCc
Confidence            87  67777766 3       36778899988873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=1.3e-06  Score=70.68  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             CCCCceEEEecCCCCcchhhhhhccccC-CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch
Q 035836          216 LPTNLHSLEIDGNMEIWKSTIEWGRGFH-RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL  294 (380)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  294 (380)
                      .+.++++|+|+++.......      ++ .+.+|+.|++++  +.+..+..-        ..++.|+.|++++ +.++++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~--N~I~~l~~l--------~~L~~L~~L~L~~-N~I~~i   79 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSN--NQITKLEGL--------PGLPRLKTLDLSN-NRISSI   79 (175)
T ss_dssp             -------------------S--------TT-TT--EEE-TT--S--S--TT------------TT--EEE--S-S---S-
T ss_pred             cccccccccccccccccccc------hhhhhcCCCEEECCC--CCCccccCc--------cChhhhhhcccCC-CCCCcc
Confidence            34466777777765332211      33 467888888887  567766642        4778999999998 788888


Q ss_pred             hhhh-ccCCCCceEeeecCCCCcccCCCC---CcccccEEEecCchhH
Q 035836          295 SSSI-VDLQNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCPLI  338 (380)
Q Consensus       295 ~~~~-~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~~l  338 (380)
                      ...+ ..+|+|++|++++ ++++++....   -.++|+.|++.++|--
T Consensus        80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6544 5799999999998 7888876621   2578999999998853

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.17  E-value=1.5e-07  Score=81.80  Aligned_cols=115  Identities=14%  Similarity=0.122  Sum_probs=52.1

Q ss_pred             CCCCCEEeccCCCC----cccccccCCCCCCccEEEeccCCCCCCC-----CCCCCCCCceEEEecCCCCcchhhhhhcc
Q 035836          170 CAKLTRLDIYDCER----LEALPKGLHNLTSLQELTIGKGVELPSL-----EEDGLPTNLHSLEIDGNMEIWKSTIEWGR  240 (380)
Q Consensus       170 ~~~L~~L~l~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  240 (380)
                      ++.|+.+.+..|..    .+.+..++.++++|++|++.+|......     .....+++|+.+++++|..-..-...+..
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            44555655554322    1122234555666666666665322211     11234456666666666433221111111


Q ss_pred             c-cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccC
Q 035836          241 G-FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF  288 (380)
Q Consensus       241 ~-~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  288 (380)
                      + -...|+|+.|.+.+  +.++.-...  .+.....-.+.|+.|.+++|
T Consensus       264 al~~~~p~L~vl~l~g--NeIt~da~~--~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAG--NEITRDAAL--ALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHhccCCCCceeccCc--chhHHHHHH--HHHHHHhcchhhHHhcCCcc
Confidence            1 23457777777777  222211100  00111123567777777774

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.13  E-value=6.8e-07  Score=77.80  Aligned_cols=231  Identities=17%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             CccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCCC----ccc-------ccccCCCCCcEEEccccccceecc
Q 035836          100 SLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESLK----ILP-------SGLHNLRQLQKIEIWECENLVSFT  164 (380)
Q Consensus       100 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~-------~~~~~l~~L~~L~l~~~~~l~~l~  164 (380)
                      .++++++++|+.-.    .+-..+.+.++|+.-++++ -..+    .+|       ..+..++.|++++++++..-...+
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            58888888875322    3444556667777777765 2222    122       223345677777777643222222


Q ss_pred             C----CCccCCCCCEEeccCCCCcc----c---------ccccCCCCCCccEEEeccCCCCCCCC-----CCCCCCCceE
Q 035836          165 E----GGLPCAKLTRLDIYDCERLE----A---------LPKGLHNLTSLQELTIGKGVELPSLE-----EDGLPTNLHS  222 (380)
Q Consensus       165 ~----~~~~~~~L~~L~l~~~~~~~----~---------~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~  222 (380)
                      .    .+.++..|++|.+.+|-.-.    .         .......-+.|+++....|.....-.     .....+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            2    22336667777776542211    0         11122334566666666553222110     1133456777


Q ss_pred             EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccc-----hhh-
Q 035836          223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER-----LSS-  296 (380)
Q Consensus       223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~-  296 (380)
                      +.+..|.....-.......+.++++|+.|++..  +.++.-  ....+..+++..++|+.|++++|. ++.     +.. 
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~e--gs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a  264 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLE--GSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA  264 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhH--HHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence            776666543321111112256677777777765  222111  111223334555667777777763 321     111 


Q ss_pred             hhccCCCCceEeeecCCCCcccCCC------CCcccccEEEecCchh
Q 035836          297 SIVDLQNLTILQLIDCPKLKYFPEK------GLPSSLLELWIWDCPL  337 (380)
Q Consensus       297 ~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~  337 (380)
                      .-...|+|+.|.+.+ +.++.-...      .--+.|..|++++|..
T Consensus       265 l~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            223456777777777 334331110      0134566677766543

>PLN03150 hypothetical protein; Provisional

Probab=98.11  E-value=7.7e-06  Score=80.51  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             ccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEecc
Q 035836          125 LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGK  204 (380)
Q Consensus       125 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  204 (380)
                      ++.|+++++.....+|..+..+++|+.|+++++.....+|..+..+++|+.|++++|.....+|..+.++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56667766555556666666777777777776433335555566666777777777666666666677777777777777


Q ss_pred             CCCCCCCCCC--CCCCCceEEEecCCCC
Q 035836          205 GVELPSLEED--GLPTNLHSLEIDGNME  230 (380)
Q Consensus       205 ~~~~~~~~~~--~~~~~L~~L~l~~~~~  230 (380)
                      |.....+|..  ....++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            6544344432  1223455666776653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.09  E-value=1.5e-07  Score=86.72  Aligned_cols=154  Identities=27%  Similarity=0.350  Sum_probs=115.3

Q ss_pred             CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCC
Q 035836           95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLT  174 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  174 (380)
                      ..|- .|+.+.++.|. +..+|..+.++..|.+|+++. +.+..+|..++.++ |+.|-+++ ++++.+|+.+.-.+.|.
T Consensus        95 ~~f~-~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~  169 (722)
T KOG0532|consen   95 CAFV-SLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLA  169 (722)
T ss_pred             HHHH-HHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHH
Confidence            3444 58888888874 778999999999999999998 78888898888877 88998888 78999999888778899


Q ss_pred             EEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836          175 RLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS  254 (380)
Q Consensus       175 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  254 (380)
                      .++.+.| .+..+|..+.++.+|+.|.+..+.... +|..-..-.|..||++.|........     |..++.|++|-+.
T Consensus       170 ~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis~iPv~-----fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  170 HLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKISYLPVD-----FRKMRHLQVLQLE  242 (722)
T ss_pred             Hhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCceeecchh-----hhhhhhheeeeec
Confidence            9998875 455677778888899999988874433 33322255677788877654443333     5577778888777


Q ss_pred             cCCCCCcc
Q 035836          255 GCDDDMVS  262 (380)
Q Consensus       255 ~~~~~l~~  262 (380)
                      +  +-+.+
T Consensus       243 n--NPLqS  248 (722)
T KOG0532|consen  243 N--NPLQS  248 (722)
T ss_pred             c--CCCCC
Confidence            5  44443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.05  E-value=5.3e-06  Score=54.85  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836          246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC  312 (380)
Q Consensus       246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  312 (380)
                      |+|++|++++  +.+..++...      +..+++|++|++++ +.++.++. .+.++++|++|++++|
T Consensus         1 p~L~~L~l~~--n~l~~i~~~~------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSN--NKLTEIPPDS------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETS--STESEECTTT------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCC--CCCCccCHHH------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            3455555555  2444554322      23455555555554 45555544 5555555555555553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.99  E-value=9.7e-06  Score=53.56  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCC
Q 035836            6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCR   74 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   74 (380)
                      |+|++|++++| .+..++.  +..+++|++|+++++. +..++.+ .|..++.        |++|+++++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~-~f~~l~~--------L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPD-AFSNLPN--------LRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETT-TTTTSTT--------ESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHH-HHcCCCC--------CCEEeCcCCc
Confidence            68999999997 7778876  4568999999999887 8999887 7889888        9999999874

...

>PLN03150 hypothetical protein; Provisional

Probab=97.84  E-value=4.3e-05  Score=75.32  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=82.1

Q ss_pred             CcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecC
Q 035836          149 LQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDG  227 (380)
Q Consensus       149 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  227 (380)
                      ++.|++.++.--..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67888888544346677777889999999999877778888899999999999999866555654 47789999999999


Q ss_pred             CCCcchhhhhhccccCCCCccceeeeecCCCCCccc
Q 035836          228 NMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSF  263 (380)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~  263 (380)
                      |.....++...   .....++..+++.+ +..+...
T Consensus       500 N~l~g~iP~~l---~~~~~~~~~l~~~~-N~~lc~~  531 (623)
T PLN03150        500 NSLSGRVPAAL---GGRLLHRASFNFTD-NAGLCGI  531 (623)
T ss_pred             CcccccCChHH---hhccccCceEEecC-CccccCC
Confidence            87554444322   12234667788887 5555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.80  E-value=1.9e-06  Score=82.69  Aligned_cols=136  Identities=26%  Similarity=0.390  Sum_probs=69.7

Q ss_pred             CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecC-CCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSC-RSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      ++.|+.|.+.+|..+...........+++        |++|+++++ ......      +..... .....+ +|+.|++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~--------L~~L~l~~~~~~~~~~------~~~~~~-~~~~~~-~L~~l~l  250 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPN--------LEELDLSGCCLLITLS------PLLLLL-LLSICR-KLKSLDL  250 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCch--------hheecccCcccccccc------hhHhhh-hhhhcC-CcCccch
Confidence            67777777777766665332224556666        777777763 221111      000000 111223 5777777


Q ss_pred             ecCCChhh--hHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEcccccccee--ccCCCccCCCCCEEecc
Q 035836          107 SHCSKLES--IAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLVS--FTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       107 ~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~  179 (380)
                      +++..+..  +......+++|++|.+.+|..++.  +......+++|+.|+++.|..+..  +......|++++.+.+.
T Consensus       251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            77654442  222223477777777666654332  223344577788888777665522  11122235555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.58  E-value=9.6e-06  Score=77.81  Aligned_cols=41  Identities=29%  Similarity=0.365  Sum_probs=23.8

Q ss_pred             CCCceEeeecCCCCcccCCCCC---cccccEEEecCchhHHHHh
Q 035836          302 QNLTILQLIDCPKLKYFPEKGL---PSSLLELWIWDCPLIEEKC  342 (380)
Q Consensus       302 ~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l~~~~  342 (380)
                      .+++.|.+..|..++...-...   ...++.+++.+|+.+....
T Consensus       401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             CccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence            3367777777766655322111   3456667777777666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.56  E-value=9.7e-06  Score=76.09  Aligned_cols=76  Identities=24%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|+.|++++|. +..+...+..+++|++|++++ +.+..+. ++..++.|+.|++.+ +.+..+. .+..++.|+.++++
T Consensus        96 ~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccc-hhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheecc-Ccchhcc-CCccchhhhcccCC
Confidence            35555555542 333322244455555555555 3333332 233344455555554 2333322 12223445555555


Q ss_pred             C
Q 035836          180 D  180 (380)
Q Consensus       180 ~  180 (380)
                      +
T Consensus       171 ~  171 (414)
T KOG0531|consen  171 Y  171 (414)
T ss_pred             c
Confidence            4

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.47  E-value=0.00015  Score=44.02  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=29.2

Q ss_pred             CCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccC
Q 035836          278 ASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP  319 (380)
Q Consensus       278 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  319 (380)
                      ++|++|++++ +.+++++..+.++++|+.|++++| .+++++
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            4678888888 688888876888888888888884 566654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0004  Score=59.75  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=26.8

Q ss_pred             CccEEEEecCCC--hhhhHhhccCCCCccEEeecCCCCCCcccccc-cCCCCCcEEEccc
Q 035836          100 SLRSLYVSHCSK--LESIAERLDNNTSLETIDISNCESLKILPSGL-HNLRQLQKIEIWE  156 (380)
Q Consensus       100 ~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~  156 (380)
                      .++++++.+|..  ..++-..+..+|.|+.|+++.| .+......+ -...+|+++.+.+
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcC
Confidence            466666666531  1234444556666666666653 222111111 1234566665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.25  E-value=0.00028  Score=69.82  Aligned_cols=104  Identities=26%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             CCCCEEeccCCCCcccc-cccC-CCCCCccEEEeccCCCCCC-CC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836          171 AKLTRLDIYDCERLEAL-PKGL-HNLTSLQELTIGKGVELPS-LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS  246 (380)
Q Consensus       171 ~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  246 (380)
                      .+|++|++++...+..- +..+ ..+|+|+.|.+.+-..... +. ....+++|..||+++++. +..   ++  ++.++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl---~G--IS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL---SG--ISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc---HH--Hhccc
Confidence            47888888774333211 1112 3467777777776432211 11 224566777777766542 222   12  55666


Q ss_pred             ccceeeeecCCCCCcccccccccccCCCCCCCCcceEeccc
Q 035836          247 SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED  287 (380)
Q Consensus       247 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  287 (380)
                      +|+.|.+.+  -.++....-.     .+..+++|+.||++.
T Consensus       196 nLq~L~mrn--Le~e~~~~l~-----~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  196 NLQVLSMRN--LEFESYQDLI-----DLFNLKKLRVLDISR  229 (699)
T ss_pred             cHHHHhccC--CCCCchhhHH-----HHhcccCCCeeeccc
Confidence            666666654  2222211100     012556666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.25  E-value=0.00058  Score=41.44  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=25.6

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKIL  139 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  139 (380)
                      +|++|++++| .+..+|..+.++++|++|++++| .+..+
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            5788888777 46677777778888888888874 44443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.14  E-value=0.0016  Score=52.98  Aligned_cols=108  Identities=12%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             CCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-
Q 035836          218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-  296 (380)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-  296 (380)
                      .....++|.+|.......      |.+++.|..|.+..  +.+..+.....      ..+++|+.|.+.+ +++..+.. 
T Consensus        42 d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~n--NrIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl  106 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNN--NRITRIDPDLD------TFLPNLKTLILTN-NSIQELGDL  106 (233)
T ss_pred             cccceecccccchhhccc------CCCccccceEEecC--Ccceeeccchh------hhccccceEEecC-cchhhhhhc
Confidence            455666676665332221      66777888888876  77777776553      5778899999988 67777755 


Q ss_pred             -hhccCCCCceEeeecCCCCcccCCC-----CCcccccEEEecCchhHHHH
Q 035836          297 -SIVDLQNLTILQLIDCPKLKYFPEK-----GLPSSLLELWIWDCPLIEEK  341 (380)
Q Consensus       297 -~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~c~~l~~~  341 (380)
                       .+..||.|++|.+-+ +.++.....     ...++|+.||...-..-+..
T Consensus       107 ~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~  156 (233)
T KOG1644|consen  107 DPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKERE  156 (233)
T ss_pred             chhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhhhHHHHH
Confidence             678899999999998 556554441     12568999998876544443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.13  E-value=7.7e-05  Score=70.07  Aligned_cols=196  Identities=19%  Similarity=0.265  Sum_probs=109.5

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      .++.+.++.+ .+..+-..+..+.+|+.|++.+ +.+..+...+..+++|++|++++ +.+..+. ++..++.|+.|++.
T Consensus        73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchh-hhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheec
Confidence            4666666555 2444333456677788888877 45555443355677888888877 4555543 33344567777777


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCD  257 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  257 (380)
                      +|.. ..+ ..+..+++|+.+.++++.... +..  ...+..++.++++++.......      +..+..+..+++..  
T Consensus       149 ~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~------~~~~~~l~~~~l~~--  217 (414)
T KOG0531|consen  149 GNLI-SDI-SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEG------LDLLKKLVLLSLLD--  217 (414)
T ss_pred             cCcc-hhc-cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccc------hHHHHHHHHhhccc--
Confidence            7543 222 234456777777777764322 222  3556677777777765333221      11222333334433  


Q ss_pred             CCCcccccccccccCCCCCCCC--cceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836          258 DDMVSFPLEDKRLGTALPLPAS--LTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      +.+..+....        .+..  |+.+++.+ +.+...+..+..+..+..|++.+ +.+..+..
T Consensus       218 n~i~~~~~l~--------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~  272 (414)
T KOG0531|consen  218 NKISKLEGLN--------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEG  272 (414)
T ss_pred             ccceeccCcc--------cchhHHHHHHhccc-Cccccccccccccccccccchhh-cccccccc
Confidence            3333333211        2222  78888887 56665545677777888888876 55555433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.10  E-value=0.00026  Score=70.05  Aligned_cols=135  Identities=20%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836           28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS  107 (380)
Q Consensus        28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  107 (380)
                      -.+|+.|+++|...+..        +++......+|+|++|.+++-.....         .|.. -...|| +|..|+++
T Consensus       121 r~nL~~LdI~G~~~~s~--------~W~~kig~~LPsL~sL~i~~~~~~~~---------dF~~-lc~sFp-NL~sLDIS  181 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN--------GWPKKIGTMLPSLRSLVISGRQFDND---------DFSQ-LCASFP-NLRSLDIS  181 (699)
T ss_pred             HHhhhhcCccccchhhc--------cHHHHHhhhCcccceEEecCceecch---------hHHH-HhhccC-ccceeecC
Confidence            35677777777543321        22222222344488888776321111         1111 234677 68888888


Q ss_pred             cCCChhhhHhhccCCCCccEEeecCCCCCC-cccccccCCCCCcEEEccccccce------eccCCCccCCCCCEEeccC
Q 035836          108 HCSKLESIAERLDNNTSLETIDISNCESLK-ILPSGLHNLRQLQKIEIWECENLV------SFTEGGLPCAKLTRLDIYD  180 (380)
Q Consensus       108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~------~l~~~~~~~~~L~~L~l~~  180 (380)
                      ++. ++.+ ..++++++|+.|.+.+-.... ..-..+.++++|++||++.-....      ...+....+|+|+.||.++
T Consensus       182 ~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  182 GTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             CCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            763 5544 556777888888776532222 111346678888888887532211      1112233377888888876


Q ss_pred             CCC
Q 035836          181 CER  183 (380)
Q Consensus       181 ~~~  183 (380)
                      ...
T Consensus       260 Tdi  262 (699)
T KOG3665|consen  260 TDI  262 (699)
T ss_pred             cch
Confidence            443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.94  E-value=9.6e-06  Score=77.38  Aligned_cols=104  Identities=26%  Similarity=0.259  Sum_probs=64.7

Q ss_pred             CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch
Q 035836          215 GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL  294 (380)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  294 (380)
                      ...+.++.|+|+.|.......      +..++.|++|++++  +.+..++.-.      ...+ .|+.|.+++ +.++.+
T Consensus       184 qll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsy--N~L~~vp~l~------~~gc-~L~~L~lrn-N~l~tL  247 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSY--NCLRHVPQLS------MVGC-KLQLLNLRN-NALTTL  247 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhHH------HHhccccccccccc--chhccccccc------hhhh-hheeeeecc-cHHHhh
Confidence            456777888888776544332      55678888888887  4455555422      1222 378888877 666666


Q ss_pred             hhhhccCCCCceEeeecCCCCcccCCCC---CcccccEEEecCch
Q 035836          295 SSSIVDLQNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCP  336 (380)
Q Consensus       295 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~  336 (380)
                      . .+.++.+|+.|++++ +-+.....-.   ....|+.|++.++|
T Consensus       248 ~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  248 R-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             h-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            5 577778888888887 4444433211   13467777777765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.60  E-value=2.8e-05  Score=74.38  Aligned_cols=125  Identities=24%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      .|...+.++|. +..+-..+.-++.|+.|+++.|.... +. .+..++.|++||++. +.+..+|.....--+|..|.+.
T Consensus       165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhccccccccccc-chhccccccchhhhhheeeeec
Confidence            47777777764 66666677778899999999955443 32 567799999999998 6777776643222258999988


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCC--CCCCCCCCCCceEEEecCCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELP--SLEEDGLPTNLHSLEIDGNME  230 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~  230 (380)
                      +| .++.+ .++.++.+|+.|++++|-...  .+...+.+..|+.|+|.||+.
T Consensus       241 nN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            75 34433 357788899999999873222  122345667888999999864

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.00084  Score=57.83  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=42.3

Q ss_pred             CCCCcceEecccCCCccchhh--hhccCCCCceEeeecCCCCcccCC---CCCcccccEEEecCchhHHHHhhccCCCCC
Q 035836          276 LPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCPKLKYFPE---KGLPSSLLELWIWDCPLIEEKCRKDGGQYW  350 (380)
Q Consensus       276 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  350 (380)
                      .+|++..+.+..|+ ++....  .+..+|.+--|.++. +++.+...   -.-.++|.-|-+.+.|..+..-.  +...+
T Consensus       197 ~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~  272 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRF  272 (418)
T ss_pred             hcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC--CcceE
Confidence            45566666666542 333322  455556666666665 45544333   11145677777777776664311  22233


Q ss_pred             ccccCcCeeEE
Q 035836          351 NLLTHIPYVSI  361 (380)
Q Consensus       351 ~~~~~~~~~~~  361 (380)
                      --++.++.+.+
T Consensus       273 llIaRL~~v~v  283 (418)
T KOG2982|consen  273 LLIARLTKVQV  283 (418)
T ss_pred             EEEeeccceEE
Confidence            34555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.58  E-value=0.0021  Score=54.79  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=40.3

Q ss_pred             ccCCCCCEEeccCCCCcccccc----cCCCCCCccEEEeccCCCCCCC--------------CCCCCCCCceEEEecCCC
Q 035836          168 LPCAKLTRLDIYDCERLEALPK----GLHNLTSLQELTIGKGVELPSL--------------EEDGLPTNLHSLEIDGNM  229 (380)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~  229 (380)
                      ..||.|+.+++++|..-...|+    .+.+-+.|.+|.+++|.--...              .....-|.|+.+..+.|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            3456666666666554333332    3344555666666655321110              011233566666666655


Q ss_pred             CcchhhhhhccccCCCCccceeeeec
Q 035836          230 EIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      ........|...+..-.+|+.+.+..
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~q  194 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQ  194 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeee
Confidence            43333222221133334555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.17  E-value=0.011  Score=48.27  Aligned_cols=83  Identities=14%  Similarity=0.045  Sum_probs=35.9

Q ss_pred             cCCCCCcEEEccccccceeccCCCcc-CCCCCEEeccCCCC--cccccccCCCCCCccEEEeccCCCCCCC----CCCCC
Q 035836          144 HNLRQLQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCER--LEALPKGLHNLTSLQELTIGKGVELPSL----EEDGL  216 (380)
Q Consensus       144 ~~l~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~  216 (380)
                      ..++.|+.|.+.+ +++..+.+.+.. +++|+.|.+.+|..  +.++ .-+..++.|+.|.+-+++....-    -....
T Consensus        61 p~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   61 PHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEe
Confidence            3344455555544 344444443332 33455555544321  1111 12334555555555554321110    01234


Q ss_pred             CCCceEEEecCC
Q 035836          217 PTNLHSLEIDGN  228 (380)
Q Consensus       217 ~~~L~~L~l~~~  228 (380)
                      .++|+.||+.+-
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            566676666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.0013  Score=53.48  Aligned_cols=81  Identities=21%  Similarity=0.317  Sum_probs=51.1

Q ss_pred             CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcchhhhhhccccCCCCcc
Q 035836          172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL  248 (380)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L  248 (380)
                      .++.++.+++.....-.+.+.++++++.|.+.+|..+.+.-   ..+..++|+.|++++|+.++.....+   +..+++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~---L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC---LLKLKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---HHHhhhh
Confidence            45666666544333333445667777778888776655431   12356778888888887777666555   5667777


Q ss_pred             ceeeeec
Q 035836          249 RRLAISG  255 (380)
Q Consensus       249 ~~L~l~~  255 (380)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            7777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.44  E-value=0.2  Score=38.27  Aligned_cols=13  Identities=23%  Similarity=0.580  Sum_probs=6.0

Q ss_pred             cCCCCccceeeee
Q 035836          242 FHRFSSLRRLAIS  254 (380)
Q Consensus       242 ~~~~~~L~~L~l~  254 (380)
                      +..+++|+.+.+.
T Consensus        77 F~~~~~l~~i~~~   89 (129)
T PF13306_consen   77 FSNCTNLKNIDIP   89 (129)
T ss_dssp             TTT-TTECEEEET
T ss_pred             ccccccccccccC
Confidence            4445555555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.26  E-value=0.0052  Score=52.09  Aligned_cols=36  Identities=28%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             CCCcceEecccCCCccchhh--hhccCCCCceEeeecCC
Q 035836          277 PASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       277 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~  313 (380)
                      +|+|+++.++. +.++.+..  .++.+.+|..|++.+|.
T Consensus        90 ~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   90 APNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence            36666666666 45554332  45555666666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=0.0011  Score=56.49  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             CCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836          171 AKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR  250 (380)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  250 (380)
                      .+.+.|+.++| .+.++ .....++.|++|.|+-| .+..+.....|++|++|+|..|..-.......   +.++|+|+.
T Consensus        19 ~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~I~sldEL~Y---LknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNCIESLDELEY---LKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCC-CccHH-HHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcccccHHHHHH---HhcCchhhh
Confidence            35677777764 34444 23456888888888876 44555556677788888877765433333222   667777787


Q ss_pred             eeeec
Q 035836          251 LAISG  255 (380)
Q Consensus       251 L~l~~  255 (380)
                      |++..
T Consensus        93 LWL~E   97 (388)
T KOG2123|consen   93 LWLDE   97 (388)
T ss_pred             Hhhcc
Confidence            77765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.44  E-value=0.23  Score=37.86  Aligned_cols=51  Identities=33%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             CccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEcc
Q 035836          100 SLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIW  155 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~  155 (380)
                      +++.+.+..  .+..++ ..+..+++|+.+.+.. + +..++.. +.+. +|+.+.+.
T Consensus        59 ~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   59 SLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-EEEEETS--TT-EE-TTTTTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccccc--cccccccccccccccccccccCc-c-ccEEchhhhcCC-CceEEEEC
Confidence            366666643  222222 2344566666666654 2 3333322 3334 66666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=0.0071  Score=51.82  Aligned_cols=55  Identities=16%  Similarity=0.089  Sum_probs=27.5

Q ss_pred             CCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836          194 LTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       194 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      +.+.++|+..+| .++++.....++.|+.|.|+=|...+ +.+     +..|++|++|.+..
T Consensus        18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~p-----l~rCtrLkElYLRk   72 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAP-----LQRCTRLKELYLRK   72 (388)
T ss_pred             HHHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chh-----HHHHHHHHHHHHHh
Confidence            345556666665 33444444455566666655543222 222     44555566665555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.11  E-value=0.011  Score=45.12  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeec
Q 035836          244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID  311 (380)
Q Consensus       244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  311 (380)
                      ....|...++++  +.+++++....      ..++.++.|.+.+ +.+.++|..+..++.|+.|++++
T Consensus        51 ~~~el~~i~ls~--N~fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   51 KGYELTKISLSD--NGFKKFPKKFT------IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             CCceEEEEeccc--chhhhCCHHHh------hccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence            334455555555  55555555431      2444556666665 56666666666666666666666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.92  E-value=0.0047  Score=47.16  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=46.4

Q ss_pred             CccEEEEecCCC--hhhhHhhccCCCCccEEeecCCCCCCcccccccC-CCCCcEEEccccccceeccCCCccCCCCCEE
Q 035836          100 SLRSLYVSHCSK--LESIAERLDNNTSLETIDISNCESLKILPSGLHN-LRQLQKIEIWECENLVSFTEGGLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  176 (380)
                      .+..++++.|..  +...+..+.....|+..++++ +.+..+|..+.. ++.++.+++.+ +.+.++|+.+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence            355566666542  123334444455566666666 555556655432 44666666666 5666666666666667777


Q ss_pred             eccCCCC
Q 035836          177 DIYDCER  183 (380)
Q Consensus       177 ~l~~~~~  183 (380)
                      ++..|+.
T Consensus       106 Nl~~N~l  112 (177)
T KOG4579|consen  106 NLRFNPL  112 (177)
T ss_pred             ccccCcc
Confidence            6666443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.87  E-value=0.027  Score=47.84  Aligned_cols=58  Identities=17%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             CccEEEEecC--CChhhhHhhccCCCCccEEeecCCCCC--CcccccccCCCCCcEEEccccc
Q 035836          100 SLRSLYVSHC--SKLESIAERLDNNTSLETIDISNCESL--KILPSGLHNLRQLQKIEIWECE  158 (380)
Q Consensus       100 ~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~  158 (380)
                      +|++|.++.|  .....++.....+|+|++|++++|..-  .+++ .+..+.+|..|++.+|.
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS  127 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence            5788888777  333344444455678888888774322  2222 23446666677776653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.73  E-value=0.011  Score=48.21  Aligned_cols=65  Identities=20%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             CCCCccEEEEecCCCCccccC---CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcc
Q 035836            4 TNSSLEILEIWVCHSLTYIAG---VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLT   77 (380)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~   77 (380)
                      .++.++.|.+.+|..+.+.--   ....++|+.|+|++|+.|++-... .+..+++        |+.|.+.+.+.+.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn--------Lr~L~l~~l~~v~  190 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN--------LRRLHLYDLPYVA  190 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh--------hHHHHhcCchhhh
Confidence            344455555555544433211   223556666666666655554433 3334444        5555555544433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.71  E-value=0.046  Score=46.86  Aligned_cols=41  Identities=15%  Similarity=0.207  Sum_probs=25.9

Q ss_pred             hhccCCCCccEEeecCCCCCCccccc----ccCCCCCcEEEcccc
Q 035836          117 ERLDNNTSLETIDISNCESLKILPSG----LHNLRQLQKIEIWEC  157 (380)
Q Consensus       117 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~  157 (380)
                      ..+..||+|+..+++.|.+-...|..    +..-+.|.+|.+++|
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            34556778888888776555444432    344567777777764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.31  E-value=0.091  Score=24.45  Aligned_cols=10  Identities=40%  Similarity=0.484  Sum_probs=4.2

Q ss_pred             CCceEeeecC
Q 035836          303 NLTILQLIDC  312 (380)
Q Consensus       303 ~L~~L~l~~c  312 (380)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            3444455443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.55  E-value=0.11  Score=26.00  Aligned_cols=8  Identities=50%  Similarity=0.775  Sum_probs=3.3

Q ss_pred             ccEEeecC
Q 035836          125 LETIDISN  132 (380)
Q Consensus       125 L~~L~l~~  132 (380)
                      |++|++++
T Consensus         2 L~~Ldls~    9 (22)
T PF00560_consen    2 LEYLDLSG    9 (22)
T ss_dssp             ESEEEETS
T ss_pred             ccEEECCC
Confidence            34444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.82  E-value=0.15  Score=26.66  Aligned_cols=17  Identities=29%  Similarity=0.450  Sum_probs=10.9

Q ss_pred             CCCCceEeeecCCCCcc
Q 035836          301 LQNLTILQLIDCPKLKY  317 (380)
Q Consensus       301 ~~~L~~L~l~~c~~l~~  317 (380)
                      +++|++|++++|+.+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            35666677777666655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.42  E-value=0.98  Score=23.43  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=11.9

Q ss_pred             CCCceEeeecCCCCcccCCC
Q 035836          302 QNLTILQLIDCPKLKYFPEK  321 (380)
Q Consensus       302 ~~L~~L~l~~c~~l~~~~~~  321 (380)
                      ++|++|++++ +.++.+|..
T Consensus         2 ~~L~~L~L~~-N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSN-NQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCC-CcCCcCCHH
Confidence            4566777766 566666553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.42  E-value=0.98  Score=23.43  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=11.9

Q ss_pred             CCCceEeeecCCCCcccCCC
Q 035836          302 QNLTILQLIDCPKLKYFPEK  321 (380)
Q Consensus       302 ~~L~~L~l~~c~~l~~~~~~  321 (380)
                      ++|++|++++ +.++.+|..
T Consensus         2 ~~L~~L~L~~-N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSN-NQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCC-CcCCcCCHH
Confidence            4566777766 566666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		7e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 65  LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC--SKLESIAERLDNN 122
           L EL I +C  LT      ELP  L S +       L +L       + + S+   + N 
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 123 TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE--GGLPCAKLTRLDIYD 180
            +L+++ I N   L  L   +H+L +L+++++  C  L ++    GG   A L RL + D
Sbjct: 206 QNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 181 CERLEALPKGLHNLTSLQELTIGKGV---ELPSLEEDGLPTN 219
           C  L  LP  +H LT L++L +   V    LPSL    LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 57/333 (17%), Positives = 98/333 (29%), Gaps = 67/333 (20%)

Query: 6   SSLEILEIWVCHSLTYIAGVQLPPSLKQLR------ISDCDNIRTLTVEEGIQSSSSSRR 59
           S  E L      +L           L Q +       +   +          Q  + + R
Sbjct: 12  SGRENLYFQGSTALR-----PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 60  YTSYLLEELRICSCRSLTCI-FSKNELPATLESL--EVGNLPPSLRSLYVSHCSKLESIA 116
                 + L   +      +      L         +   L   L+ + +     L  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPL----PQFPDQAFRLS-HLQHMTIDAA-GLMELP 120

Query: 117 ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF---------TEGG 167
           + +     LET+ ++    L+ LP+ + +L +L+++ I  C  L            +   
Sbjct: 121 DTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDG 227
                L  L +     + +LP  + NL +L+ L I        L    L   +H L    
Sbjct: 180 QGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS----PLSA--LGPAIHHL---- 228

Query: 228 NMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED 287
                               L  L + GC   + ++P             A L  L ++D
Sbjct: 229 ------------------PKLEELDLRGCTA-LRNYPPIFGGR-------APLKRLILKD 262

Query: 288 FPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320
             NL  L   I  L  L  L L  C  L   P 
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 41/260 (15%), Positives = 75/260 (28%), Gaps = 47/260 (18%)

Query: 112 LESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE------ 165
           + S      +++  E +      +L+     L   ++    +     +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 166 ---------------GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS 210
                                    L++     L   P     L+ LQ +TI     L  
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTID-AAGLME 118

Query: 211 L-EEDGLPTNLHSLEIDGNM------EIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSF 263
           L +       L +L +  N        I              + LR L+I  C  ++   
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIAS-----------LNRLRELSIRAC-PELTEL 166

Query: 264 P--LEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK 321
           P  L             +L SL + ++  +  L +SI +LQNL  L++ +   L      
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA 224

Query: 322 -GLPSSLLELWIWDCPLIEE 340
                 L EL +  C  +  
Sbjct: 225 IHHLPKLEELDLRGCTALRN 244

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 45/188 (23%)

Query: 30  SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYL---------LEEL--RICSCRSLTC 78
            L++L I  C  +  L        +S   +    L         +  L   I + ++L  
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210

Query: 79  -IFSKN---ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCE 134
                +    L   +  L        L  L +  C+ L +          L+ + + +C 
Sbjct: 211 LKIRNSPLSALGPAIHHLP------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 135 SLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNL 194
           +L  LP  +H L QL+                        +LD+  C  L  LP  +  L
Sbjct: 265 NLLTLPLDIHRLTQLE------------------------KLDLRGCVNLSRLPSLIAQL 300

Query: 195 TSLQELTI 202
            +   + +
Sbjct: 301 PANCIILV 308

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 69  RICSCRSLTCIFSKNELPATLESLEV-GNLPPSLRSLYVSHCSKLESIAER-LDNNTSLE 126
           RIC C +   +  ++++       E+  +LP +   L     +KL  I +        LE
Sbjct: 5   RICHCSNRVFLCQESKV------TEIPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLE 57

Query: 127 TIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG---GLPCAKLTRLDIYDCE 182
            I+IS  + L+++ +    NL +L +I I +  NL+         LP   L  L I +  
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP--NLQYLLISNT- 114

Query: 183 RLEALPKGLH-NLTSLQELTIGKGVELPSLEE---DGLPTNLHSLEIDGN 228
            ++ LP     +      L I   + + ++E     GL      L ++ N
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 35/216 (16%)

Query: 6   SSLEILEIWVCHSLTYI-AGV--QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTS 62
             LE +EI     L  I A V   LP  L ++RI   +N+  +        +  +     
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYI--NPEAFQNLPN----- 105

Query: 63  YLLEELRICSCRSLTCI--FSKNELPA----------TLESLEVG---NLPPSLRSLYVS 107
             L+ L I +   +  +    K                + ++E      L      L+++
Sbjct: 106 --LQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG 166
               ++ I     N T L+ +++S+  +L+ LP+   H       ++I     + S    
Sbjct: 163 KN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY 220

Query: 167 GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTI 202
           GL    L +L       L+ LP  L  L +L E ++
Sbjct: 221 GL--ENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 31/260 (11%)

Query: 71  CSCRSLTCIFSKNELPATLESLEVGN-----LPPS-------LRSLYVSHCSKLESIAER 118
              RS T I S   L A ++SL++       +          L+ L +    ++ +I   
Sbjct: 12  GRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGD 68

Query: 119 -LDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEGGL--PCAKLT 174
              +  SLE +D+S+   L  L S     L  L+ + +       +     L      L 
Sbjct: 69  AFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQ 126

Query: 175 RLDIYDCERLEALPKG-LHNLTSLQELTIGKGVELPSLEEDGLP--TNLHSLEIDGNMEI 231
            L I + E    + +     LTSL EL I K + L + +   L    ++H L +  +   
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLS--- 182

Query: 232 WKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLE--DKRLGTALPLPASLTSLWIEDFP 289
            +S           SS+R L +   +     F     D+       L    + L  E F 
Sbjct: 183 -ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 290 NLERLSSSIVDLQNLTILQL 309
            L +L   I++L  +     
Sbjct: 242 ELLKLLRYILELSEVEFDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 60/354 (16%), Positives = 117/354 (33%), Gaps = 52/354 (14%)

Query: 1   MCDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRY 60
             D  SS+  LE+    +L       LP       +       ++  +E         RY
Sbjct: 191 FADILSSVRYLELR-DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 61  TSYLLE-ELRICSCRSLTCI-FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER 118
              L E E   C+   L     S++++ + L  +E      ++R L++        ++  
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET----VTIRRLHIPQFYLFYDLSTV 305

Query: 119 LDNNTSLETIDISNCESLKILPSGLHNLRQLQ-------KIEIWECENLVSFTEGGLPCA 171
                 ++ I + N +   +  S   +L+ L+        +     +N      G  P  
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK--GAWP-- 361

Query: 172 KLTRLDIYDC--ERLEALPKGLHNLTSLQELTIGKGVELPSLEED-GLPTNLHSLEIDGN 228
            L  L +       ++   + L  L +L  L I        + +    P  +  L +   
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS-RNTFHPMPDSCQWPEKMRFLNLSST 420

Query: 229 MEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 288
                  ++         +L  L +S  + D  S  L              L  L+I   
Sbjct: 421 GI---RVVKTC----IPQTLEVLDVSNNNLDSFSLFLP------------RLQELYISR- 460

Query: 289 PN-LERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPS--SLLELWI----WDC 335
            N L+ L  + +    L ++++    +LK  P+       SL ++W+    WDC
Sbjct: 461 -NKLKTLPDASL-FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 511

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 51/330 (15%), Positives = 100/330 (30%), Gaps = 35/330 (10%)

Query: 11  LEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRI 70
           + I  C++++    ++  P ++ + +    +     +            Y    +E +  
Sbjct: 48  VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL-----VPDGWGGYVYPWIEAM-S 101

Query: 71  CSCRSLTCIFSKNELPATLESLE-VGNLPPSLRSLYVSHCSKL--ESIAERLDNNTSLET 127
            S   L  I  K  +  T + LE +     + + L +S C     + +A       +L+ 
Sbjct: 102 SSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 128 IDISNCESLKILPSGL----HNLRQLQKIEIWECENLVSFTEGGLP-----CAKLTRLDI 178
           +D+   +   +    L         L  + I    + V  +   L      C  L  L +
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV--SFSALERLVTRCPNLKSLKL 218

Query: 179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDG-----LPTNLHSLEIDGNMEIWK 233
                LE L   L     L+EL  G        +        L        + G  +   
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 234 STIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER 293
           + +     +   S L  L +S          ++   L   L     L  LW+ D+     
Sbjct: 279 AYLP--AVYSVCSRLTTLNLSYA-------TVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329

Query: 294 LSSSIVDLQNLTILQLIDCPKLKYFPEKGL 323
           L       ++L  L++         P   L
Sbjct: 330 LEVLASTCKDLRELRVFPSEPFVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 19/198 (9%)

Query: 6   SSLEILEIWVCHSLTYIAGVQLPPSLKQLR--ISDCDNIRTLTVEEGIQSSSSSRRYTSY 63
              E   +    +LT    V +     +L   +  C  +        + + + +R     
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT----NAALITIARNRPN--- 398

Query: 64  LLEELRICSCRSLTCIFSKNELPATLESLE-VGNLPPSLRSLYVSHCSKLESIAERLDNN 122
            +   R+C        +   E          +      LR L +S     +         
Sbjct: 399 -MTRFRLCIIEPKAPDYLTLEP--LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 123 TSLETIDISNCE-SLKILPSGLHNLRQLQKIEIWECENL-VSFTEGGLPCAKLTRLDIYD 180
             +E + ++    S   +   L     L+K+EI +C     +          +  L +  
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 181 C----ERLEALPKGLHNL 194
           C       + L + +  L
Sbjct: 516 CSVSFGACKLLGQKMPKL 533

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 31/254 (12%), Positives = 61/254 (24%), Gaps = 52/254 (20%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88
             L  L +S      T+   + ++      +     L+ L +        +         
Sbjct: 289 SRLTTLNLSYA----TVQSYDLVKLLCQCPK-----LQRLWVLDYIEDAGLEV------- 332

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG------ 142
                + +    LR L V                  L ++    C  L+ +         
Sbjct: 333 -----LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTN 386

Query: 143 ------LHNLRQLQKIEIWECENLVSFTEGGLP-----------CAKLTRLDIYDCERLE 185
                   N   + +  +   E          P           C  L RL +      +
Sbjct: 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK 446

Query: 186 ALPKGLHNLTSLQELTIGK-GVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGF 242
                      ++ L++   G     +     G   +L  LEI                 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDC---PFGDKALLANA 502

Query: 243 HRFSSLRRLAISGC 256
            +  ++R L +S C
Sbjct: 503 SKLETMRSLWMSSC 516

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 62/250 (24%), Positives = 90/250 (36%), Gaps = 60/250 (24%)

Query: 70  ICSCRSLTCIF-SKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETI 128
                 L+        LPA         LP  L  L++    +L S+         L+ +
Sbjct: 100 PPGLLELSIFSNPLTHLPA---------LPSGLCKLWIFGN-QLTSLPVLPPG---LQEL 146

Query: 129 DISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP--CAKLTRLDIYDCERLEA 186
            +S+ + L  LP+    L +L         N    T   LP   + L  L + D  +L +
Sbjct: 147 SVSDNQ-LASLPALPSELCKL------WAYNN-QLTS--LPMLPSGLQELSVSDN-QLAS 195

Query: 187 LPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGN-MEIWKSTIEWGRGFHRF 245
           LP     L  L          L SL    LP+ L  L + GN +                
Sbjct: 196 LPTLPSELYKLWAY----NNRLTSLPA--LPSGLKELIVSGNRLTSLPVLP--------- 240

Query: 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALP-LPASLTSLWIEDFPN-LERLSSSIVDLQN 303
           S L+ L +SG             RL T+LP LP+ L SL +    N L RL  S++ L +
Sbjct: 241 SELKELMVSGN------------RL-TSLPMLPSGLLSLSVYR--NQLTRLPESLIHLSS 285

Query: 304 LTILQLIDCP 313
            T + L   P
Sbjct: 286 ETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 48/237 (20%), Positives = 74/237 (31%), Gaps = 59/237 (24%)

Query: 122 NTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDC 181
           N     +++     L  LP  L     +  + I +  NL S         +L  L++   
Sbjct: 39  NNGNAVLNVGES-GLTTLPDCL--PAHITTLVIPDN-NLTSLPALP---PELRTLEVSGN 91

Query: 182 ERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRG 241
            +L +LP     L  L   +      LP+     LP+ L  L I GN        +    
Sbjct: 92  -QLTSLPVLPPGLLELSIFSNP-LTHLPA-----LPSGLCKLWIFGN--------QLTSL 136

Query: 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWI---------EDFPNLE 292
                 L+ L++S              +L +   LP+ L  LW               L+
Sbjct: 137 PVLPPGLQELSVSDN------------QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184

Query: 293 RLS----------SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIE 339
            LS          +   +L  L         +L   P   LPS L EL +    L  
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPA--LPSGLKELIVSGNRLTS 235

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 44/189 (23%)

Query: 26  QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85
            LP     L+     + +  ++                 L +L   + + LT +     L
Sbjct: 135 SLPVLPPGLQELSVSDNQLASLPALPSE-----------LCKLWAYNNQ-LTSL---PML 179

Query: 86  PATLESLEVGN--------LPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLK 137
           P+ L+ L V +        LP  L  L+  +  +L S+       + L+ + +S    L 
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLPALP---SGLKELIVSGNR-LT 234

Query: 138 ILPSGLHNLRQLQ----KIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHN 193
            LP     L++L     ++                  + L  L +Y   +L  LP+ L +
Sbjct: 235 SLPVLPSELKELMVSGNRLTSLPML-----------PSGLLSLSVYRN-QLTRLPESLIH 282

Query: 194 LTSLQELTI 202
           L+S   + +
Sbjct: 283 LSSETTVNL 291

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 58/377 (15%), Positives = 114/377 (30%), Gaps = 117/377 (31%)

Query: 104 LYVSHCSKLESIAERLDN-NTSLETIDISNCESLKILPSGLHN----LRQLQKIE----- 153
           L + +C+  E++ E L      ++    S  +    +   +H+    LR+L K +     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 154 ------IWECENLVSFTEGGLPCAKL--TR-LDIYDC--------ERLEALPKGLH--NL 194
                 +   +   +F    L C  L  TR   + D           L+     L    +
Sbjct: 247 LLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 195 TSLQELTIGKGV-ELPSLEEDGLPTNLHSLEIDGNMEIWKSTIE-WGR-GFHRFSSLRRL 251
            SL    +     +LP       P    S+ I  ++    +T + W      + +++   
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPR-RLSI-IAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 252 AISGCD--------DDMVSFPLEDKRLGTALPLPAS-LTSLW-------IEDFPN-LERL 294
           +++  +        D +  FP           +P   L+ +W       +    N L + 
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFP-PS------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 295 S----------SSIVDLQ--------NLTIL--QLIDC--PKLKYFPEKGLPS------- 325
           S           SI  +         N   L   ++D       +  +  +P        
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 326 ----------------SLLELWIWDCPLIEEKCRKDG------GQYWNLLTHIPYVSIDY 363
                           +L  +   D   +E+K R D       G   N L  + +    Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----Y 530

Query: 364 K-WVFDDDPTEDDSTED 379
           K ++ D+DP  +     
Sbjct: 531 KPYICDNDPKYERLVNA 547

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 63/383 (16%), Positives = 113/383 (29%), Gaps = 96/383 (25%)

Query: 48  EEGIQSSSSSRRYTSY---LLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSL 104
            E  Q S  +R Y      L  + ++ +  +++ +    +L   L  L            
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-------- 151

Query: 105 YVS-H----CSKLESIAERLDNNTSLET--------IDISNCESLKILPSGLHNLRQLQK 151
            V         K   +A  +  +  ++         +++ NC S + +   L  L  L +
Sbjct: 152 NVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQ 208

Query: 152 IEIWECENLVSFTEGGLPC----AKLTRL--------------DIYDCERLEALPKGLHN 193
           I+          +   L      A+L RL              ++ + +   A      N
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----N 263

Query: 194 LTSLQEL--TIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL 251
           L+  + L  T  K V           T+     +        S                L
Sbjct: 264 LSC-KILLTTRFKQV-----------TDF----LSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 252 A-ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFP---------NLERLSSSI-VD 300
                C       P E     T  P   S+ +  I D           N ++L++ I   
Sbjct: 308 LKYLDCRPQ--DLPREVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 301 LQNLTILQLIDC-PKLKYFPEK-GLPSSLLELWIW------DCPLIEEKCRKDG---GQY 349
           L  L   +      +L  FP    +P+ LL L IW      D  ++  K  K      Q 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 350 WNLLTHIPYVSIDYKWVFDDDPT 372
                 IP + ++ K   +++  
Sbjct: 422 KESTISIPSIYLELKVKLENEYA 444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 47/381 (12%), Positives = 99/381 (25%), Gaps = 98/381 (25%)

Query: 6   SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
           + LE+L +   H       +  P  +      +      +  ++          ++   L
Sbjct: 105 TELEVLALG-SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD--L 161

Query: 66  EELRICSCRSLTCIFSKNELPATLESL------------EVGNLPPSLRSLYVSH----- 108
            +  I S      I   + +      +             V  L   LR  Y+ +     
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT-KLRQFYMGNSPFVA 220

Query: 109 --------------CSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKI-- 152
                           + ++   + DN   L  +++ NC +L  LP+ L  L ++Q I  
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 153 -------------------EIWECENLV-------SFTEGGLP-----CAKLTRLDIYDC 181
                              +    E +        +     +        KL  L+    
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 182 ERLEALPKGLHNLTSLQELTIG--KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWG 239
            +LE       +   L  L +   +  E+P+    G    + +L    N ++    I   
Sbjct: 341 -QLEGKLPAFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHN-KL--KYIPNI 395

Query: 240 RGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS---- 295
                 S +  +  S          +         PL  +          N+  ++    
Sbjct: 396 FDAKSVSVMSAIDFSYN-------EIGSVDGKNFDPLDPTPFKG-----INVSSINLSNN 443

Query: 296 -------SSIVDLQNLTILQL 309
                          L+ + L
Sbjct: 444 QISKFPKELFSTGSPLSSINL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 35/345 (10%), Positives = 104/345 (30%), Gaps = 79/345 (22%)

Query: 6   SSLEILEIWVCHSLTYI-AGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYL 64
             L  +E++ C +LT +   ++  P ++ + ++    I    +++  Q+ + +       
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-- 306

Query: 65  LEELR--------------ICSCRSLTCIF-SKNELPATLESLEVGNLPPSLRSLYVSHC 109
           ++ +               +   + L  +    N+L   L +   G+    L SL +++ 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF--GSEI-KLASLNLAYN 363

Query: 110 SKLESIAERLDNN-TSLETIDISNCESLKILPS--GLHNLRQLQ-------KIEIWECEN 159
            ++  I          +E +  ++   LK +P+     ++  +        +I   + +N
Sbjct: 364 -QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 160 LVSFTEGGLPCAKLTRLDIYDCERLEALPKG-LHNLTSLQEL--------TIGKGVELPS 210
                        ++ +++ +  ++   PK      + L  +         I K      
Sbjct: 422 FDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 211 LEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRL 270
            E       L S+++  N  +  + +           L  + +S                
Sbjct: 481 NENFKNTYLLTSIDLRFNK-L--TKLSDDFRATTLPYLVGIDLSYN-------------- 523

Query: 271 GTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKL 315
                              +  +  +  ++   L    + +    
Sbjct: 524 -------------------SFSKFPTQPLNSSTLKGFGIRNQRDA 549

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 29/211 (13%)

Query: 119 LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEI----WECENLVSFTEGGLPCAKLT 174
           L++N  +  + +    +   +P  +  L +L+ + +     +    +   +G        
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 175 RLDIYDCERLEALPKGLH--NLTSLQELTIGKGVELPSL-EEDGLPTNLHSLEIDGNM-- 229
           +         +         + + L +  I    +  S+ +   +      +    N   
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 230 EIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFP 289
            + K+         R + LR+  +                   A  +  +  +   E   
Sbjct: 197 FVSKA-------VMRLTKLRQFYMGNSPF-------------VAENICEAWENENSEYAQ 236

Query: 290 NLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320
             +       +L++LT +++ +CP L   P 
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 48/202 (23%)

Query: 71  CSCRSLTCIFSKNELPATLESLEVGNLP------------PSLRSLYVSHCSKLESIAER 118
            +C+ +  I S   LP + ++L++                P++  +YVS    L+ +   
Sbjct: 18  VTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74

Query: 119 L-DNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEGGL--PCAKLT 174
              N + +  I+I N  +L  +    L  L  L+ + I+    L  F +           
Sbjct: 75  SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFF 133

Query: 175 RLDIYDCERLEALP----KGLHNL---------------------TSLQELTIGKGVELP 209
            L+I D   + ++P    +GL N                      T L  + + K   L 
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 210 SLEED---GLPTNLHSLEIDGN 228
            +++D   G+ +    L++   
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQT 215

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 51/274 (18%), Positives = 102/274 (37%), Gaps = 39/274 (14%)

Query: 71  CSCRSLTCIFSKNELPATLESLEV-GNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETI 128
           CS +    +  +         + V   +P   R L +    +++++ +    +   LE +
Sbjct: 9   CSAQDRAVLCHRKRF------VAVPEGIPTETRLLDLGKN-RIKTLNQDEFASFPHLEEL 61

Query: 129 DISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG---GLPCAKLTRLDIYDCERLE 185
           +++      + P   +NL  L+ + +     L     G   GL    LT+LDI +  ++ 
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS--NLTKLDISEN-KIV 117

Query: 186 ALPKGL-HNLTSLQELTIGKGVELPSLEED---GLPTNLHSLEIDGNMEIWKSTIEWGRG 241
            L   +  +L +L+ L +G   +L  +      GL  +L  L ++    +  ++I     
Sbjct: 118 ILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLN-SLEQLTLEKC-NL--TSIPTE-A 171

Query: 242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDL 301
                 L  L +           +   R  +   L   L  L I  +P L+ ++ + +  
Sbjct: 172 LSHLHGLIVLRLRHL-------NINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYG 223

Query: 302 QNLTILQLIDCPKLKYFPE---KGLPSSLLELWI 332
            NLT L +  C  L   P    + L   L  L +
Sbjct: 224 LNLTSLSITHC-NLTAVPYLAVRHLV-YLRFLNL 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 11/136 (8%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWEC 157
             L+ L +SH   L+++        +L ++ I++C  L  +P   + +L  L+ + +   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNL--S 256

Query: 158 ENLVSFTEGGL--PCAKLTRLDIYDCERLEALPKG-LHNLTSLQELTIGKGVELPSLEED 214
            N +S  EG +     +L  + +    +L  +       L  L+ L +  G +L +LEE 
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVS-GNQLTTLEES 314

Query: 215 GL--PTNLHSLEIDGN 228
                 NL +L +D N
Sbjct: 315 VFHSVGNLETLILDSN 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 82/294 (27%), Positives = 117/294 (39%), Gaps = 74/294 (25%)

Query: 65  LEELRICSCRSLTCIFSKNELPATLESLEVGN--------LPPSLRSLYVSHCSKLESIA 116
           LE L   SC SLT +    ELP +L+SL V N        LPP L  L VS+  +LE + 
Sbjct: 93  LESLVA-SCNSLTEL---PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLP 147

Query: 117 ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQ----KIE-IWECENLVSFTEGGLPCA 171
           E L N++ L+ ID+ N  SLK LP    +L  +     ++E + E +NL           
Sbjct: 148 E-LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPF--------- 196

Query: 172 KLTRLDIYDCERLEALPKGLHNLTSLQ----ELTIGKGVELPSLEEDGLPTNLHSLEIDG 227
            LT +   +   L+ LP    +L S+      L      ELP L        L ++  D 
Sbjct: 197 -LTAIYADNN-SLKKLPDLPLSLESIVAGNNILE-----ELPEL---QNLPFLTTIYADN 246

Query: 228 N-MEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALP-LPASLTSLWI 285
           N ++                SL  L +                  T LP LP SLT L +
Sbjct: 247 NLLKTLPDLP---------PSLEALNVRDNY-------------LTDLPELPQSLTFLDV 284

Query: 286 EDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIE 339
            +      LS    +L  L         +++   +  LP SL EL + +  LIE
Sbjct: 285 SEN-IFSGLSELPPNLYYLNASSN----EIRSLCD--LPPSLEELNVSNNKLIE 331

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 50/242 (20%), Positives = 74/242 (30%), Gaps = 45/242 (18%)

Query: 108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE--------- 158
           H S L  +    +N  S      +  E  +  P G    R++    + +C          
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 159 ---NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDG 215
               L S  E       L  L    C  L  LP+   +L SL          L       
Sbjct: 79  NNLGLSSLPEL---PPHLESLVA-SCNSLTELPELPQSLKSLLVDNN-NLKALSD----- 128

Query: 216 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALP 275
           LP  L  L +  N       +E        S L+ + +                L     
Sbjct: 129 LPPLLEYLGVSNNQ------LEKLPELQNSSFLKIIDVDNN------------SLKKLPD 170

Query: 276 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDC 335
           LP SL  +   +   LE L   + +L  LT +   +   LK  P+  LP SL  +   + 
Sbjct: 171 LPPSLEFIAAGN-NQLEEL-PELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNN 225

Query: 336 PL 337
            L
Sbjct: 226 IL 227

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 47/265 (17%), Positives = 97/265 (36%), Gaps = 58/265 (21%)

Query: 71  CSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETID 129
           CS   L       ++P         +LPP    L + + +K+  I +    N  +L T+ 
Sbjct: 38  CSDLGLE------KVPK--------DLPPDTALLDLQN-NKITEIKDGDFKNLKNLHTLI 82

Query: 130 ISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPK 189
           + N +  KI P     L +L+++ +   +N +      +P   L  L +++   +  + K
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLS--KNQLKELPEKMP-KTLQELRVHEN-EITKVRK 138

Query: 190 G-LHNLTSLQEL----------TIGKGV--ELPSLEE------------DGLPTNLHSLE 224
              + L  +  +           I  G    +  L               GLP +L  L 
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198

Query: 225 IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLW 284
           +DGN +I  + ++        ++L +L +S          +     G+    P  L  L 
Sbjct: 199 LDGN-KI--TKVD-AASLKGLNNLAKLGLSFN-------SISAVDNGSLANTP-HLRELH 246

Query: 285 IEDFPNLERLSSSIVDLQNLTILQL 309
           + +   L ++   + D + + ++ L
Sbjct: 247 L-NNNKLVKVPGGLADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 49/240 (20%)

Query: 27  LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIF-SKNEL 85
           +P +L++LR+ +   I  +                  +   L       +  +    N L
Sbjct: 119 MPKTLQELRVHEN-EITKV---------------RKSVFNGL-----NQMIVVELGTNPL 157

Query: 86  PATLESLEVG---NLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG 142
                 +E G    +   L  + ++    + +I + L    SL  + +     +  + + 
Sbjct: 158 --KSSGIENGAFQGM-KKLSYIRIADT-NITTIPQGLP--PSLTELHLDGN-KITKVDAA 210

Query: 143 -LHNLRQLQKIEIWECENLVSFTEGGL--PCAKLTRLDIYDCERLEALPKGLHNLTSLQE 199
            L  L  L K+ +    N +S  + G       L  L + +  +L  +P GL +   +Q 
Sbjct: 211 SLKGLNNLAKLGL--SFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQV 267

Query: 200 L--------TIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL 251
           +         IG     P         +   + +  N  +    I+    F        +
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKA-SYSGVSLFSN-PVQYWEIQPS-TFRCVYVRAAV 324

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 61/342 (17%), Positives = 125/342 (36%), Gaps = 76/342 (22%)

Query: 6   SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
             +  L+      +  I GV+   +L Q+  S+      LT    +++ +         L
Sbjct: 46  DQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ----LTDITPLKNLTK--------L 92

Query: 66  EELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSL 125
            ++ +          + N++ A +  L   NL  +L  L + +  ++  I + L N T+L
Sbjct: 93  VDILM----------NNNQI-ADITPL--ANLT-NLTGLTLFNN-QITDI-DPLKNLTNL 136

Query: 126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLE 185
             +++S+     I  S +  L  L  ++     N V+  +       L RLDI    ++ 
Sbjct: 137 NRLELSSN---TI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVS 190

Query: 186 ALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 245
            +   L  LT+L+ L      ++  +   G+ TNL  L ++GN ++    I         
Sbjct: 191 DIS-VLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGN-QL--KDIG---TLASL 242

Query: 246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSL-WIEDFPNLERLS--------- 295
           ++L  L ++                         +++L  +     L  L          
Sbjct: 243 TNLTDLDLANN----------------------QISNLAPLSGLTKLTELKLGANQISNI 280

Query: 296 SSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPL 337
           S +  L  LT L+L +  +L+         +L  L ++   +
Sbjct: 281 SPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 70  ICSCRSLTCI-FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETI 128
           + S  +LT +  + N++ + L  L    L   L  L +    ++ +I+  L   T+L  +
Sbjct: 239 LASLTNLTDLDLANNQI-SNLAPL--SGLT-KLTELKLGAN-QISNISP-LAGLTALTNL 292

Query: 129 DISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP 188
           +++  + L+ +   + NL+ L  + +    N +S         KL RL  Y+  ++  + 
Sbjct: 293 ELNENQ-LEDIS-PISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFFYNN-KVSDVS 347

Query: 189 KGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGN 228
             L NLT++  L+ G   ++  L      T +  L ++  
Sbjct: 348 -SLANLTNINWLSAG-HNQISDLTPLANLTRITQLGLNDQ 385

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 10/158 (6%)

Query: 70  ICSCRSLTCIFSKNELPATLESLEV-GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETI 128
           +    ++T    +          ++  NLP S ++L +S        +    +   L+ +
Sbjct: 4   VEVVPNITYQCMELNF------YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 129 DISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGL-PCAKLTRLDIYDCERLEAL 187
           D+S CE   I      +L  L  + +     + S   G     + L +L   +       
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 188 PKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEI 225
              + +L +L+EL +     + S +     +NL +LE 
Sbjct: 117 NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEH 153

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 49/324 (15%), Positives = 98/324 (30%), Gaps = 60/324 (18%)

Query: 27  LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP 86
           LP S K L +S    +R L        S S   +    L+ L +          S+ E+ 
Sbjct: 26  LPFSTKNLDLSFN-PLRHLG-------SYSFFSFPE--LQVLDL----------SRCEI- 64

Query: 87  ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNL 146
            T+E     +L   L +L ++               +SL+ +         +    + +L
Sbjct: 65  QTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 147 RQLQKIEIWECENLVSFTEGGLP-----CAKLTRLDIYDCERLEALPKG-LHNLTSLQEL 200
           + L+++ +             LP        L  LD+    +++++    L  L  +  L
Sbjct: 124 KTLKELNVAHN----LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLL 178

Query: 201 TIG--------KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLA 252
            +           ++  + +E      LH L +  N +               + L    
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKE----IRLHKLTLRNNFDSLNVMKTC---IQGLAGLEVHR 231

Query: 253 ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFP------NLERLSSSIVDLQNLTI 306
           +         F  E             L +L IE+F        L+ +      L N++ 
Sbjct: 232 LVLG-----EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 307 LQLIDCPKLKYFPEKGLPSSLLEL 330
             L+    ++   +         L
Sbjct: 287 FSLVSV-TIERVKDFSYNFGWQHL 309

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 13/167 (7%)

Query: 70  ICSCRSLTCI-FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETI 128
                 L  + F  + L    E     +L  +L  L +SH     +     +  +SLE +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 129 DISNCE-SLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCERLEA 186
            ++        LP     LR L  +++ +C  L   +       + L  L++       +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFS 508

Query: 187 LPKG-LHNLTSLQELTIG----KGVELPSLEEDGLPTNLHSLEIDGN 228
           L       L SLQ L          +   L+    P++L  L +  N
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 65  LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTS 124
           L  L I   R     +  +++      L       ++ S  +   + +E + +    N  
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCL------TNVSSFSLVSVT-IERV-KDFSYNFG 305

Query: 125 LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD--CE 182
            + +++ NC+  +     L +L++L        +   +F+E  LP   L  LD+      
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSN---KGGNAFSEVDLP--SLEFLDLSRNGLS 360

Query: 183 RLEALPKGLHNLTSLQELTIGK-GVELPSLEEDGLPTNLHSLEIDGNM--EIWKSTIEWG 239
                 +     TSL+ L +   GV   S    GL   L  L+   +   ++ + ++   
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSV--- 416

Query: 240 RGFHRFSSLRRLAISGC 256
             F    +L  L IS  
Sbjct: 417 --FLSLRNLIYLDISHT 431

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 37/257 (14%), Positives = 79/257 (30%), Gaps = 43/257 (16%)

Query: 4   TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSY 63
           T S     +  +   ++     ++    K++ +     +        +   + +R     
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD----LLQDAINRNPEMK 415

Query: 64  LLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCS------------- 110
            +++    S +        N +  T  S  +  L   L+ +Y ++               
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDA 472

Query: 111 ------KLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIW--------- 155
                 + E+      N   L  +++ NC ++  LP  L++L +LQ + I          
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 156 ECENLVSFTEGGLPCAKLTRLDIYDCERLEALPK--GLHNLTSLQELTIG--KGVELPSL 211
              +     +      K+    +     LE  P    L  +  L  L     K   L + 
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591

Query: 212 EEDGLPTNLHSLEIDGN 228
              G    L  L++D N
Sbjct: 592 ---GTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 35/225 (15%)

Query: 96  NLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIW 155
           +    +  L ++       + + +   T L+ +      S  +         +L      
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLF-GDEELTPDMSE 377

Query: 156 ECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDG 215
           E ++ +      +      RL        + L   ++    ++ +     + L   +   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRL-----NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 216 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALP 275
           L   +  +                +   R + L+ +  +                 T   
Sbjct: 433 LTNRITFIS---------------KAIQRLTKLQIIYFANS------------PF-TYDN 464

Query: 276 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE 320
           +         +     E    S  +L++LT ++L +CP +   P+
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 23/158 (14%)

Query: 62  SYLLEELRICSCRSLTCI-FSKNEL----PATLESLEVGNLPPSLRSLYVSHCSKLESIA 116
            Y+       S   +  + FS N++         S++      +  ++ +S+    +   
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI-NASTVTLSYNEIQKFPT 690

Query: 117 ERLDNNTSLETIDISNC-------ESLKILPSGLHNLRQLQKIEIWECENL-----VSFT 164
           E     + + TI +SN         SLK       N   L  I++    N        F 
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL--RFNKLTSLSDDFR 748

Query: 165 EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTI 202
              LP   L+ +D+       + P    N + L+   I
Sbjct: 749 ATTLP--YLSNMDVSYN-CFSSFPTQPLNSSQLKAFGI 783

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 18/164 (10%)

Query: 99  PSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWEC 157
            SL +L +     L  I     +  + L  + + N     I     + +  L ++++ E 
Sbjct: 123 ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 158 ENLVSFTEG---GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED 214
           + L   +EG   GL    L  L++  C  ++ +P  L  L  L+EL +      P +   
Sbjct: 182 KKLEYISEGAFEGLF--NLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGN-HFPEIRPG 236

Query: 215 ---GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255
              GL  +L  L +  + ++  S IE    F   +SL  L ++ 
Sbjct: 237 SFHGLS-SLKKLWVMNS-QV--SLIERN-AFDGLASLVELNLAH 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 39/218 (17%), Positives = 82/218 (37%), Gaps = 35/218 (16%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQL--QKIEIW 155
            S+  +  ++   ++S+ + +    ++  + ++  +   I P + L NL  L   + +I 
Sbjct: 43  NSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK 100

Query: 156 ECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG--KGVELPSLEE 213
           +  +L           KL  L +     +  +  GL +L  L+ L +G  K  ++  L  
Sbjct: 101 DLSSLKDLK-------KLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDITVLS- 150

Query: 214 DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTA 273
             L T L +L ++ N +I  S I         + L+ L +S      +   L        
Sbjct: 151 -RL-TKLDTLSLEDN-QI--SDIV---PLAGLTKLQNLYLSKNHISDLR-ALAG------ 195

Query: 274 LPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID 311
           L    +L  L +     L +  +   +L     ++  D
Sbjct: 196 LK---NLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 43/260 (16%), Positives = 76/260 (29%), Gaps = 37/260 (14%)

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ 148
           + +L++     +L  L      KL ++   +   T L  ++    +  K+  S    L  
Sbjct: 76  ITTLDLSQNT-NLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 149 LQKIEIWECEN--LVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGV 206
           L       C    L           +LT LD +  +++  L   +   T L  L      
Sbjct: 132 L------NCARNTLTEIDVSHNT--QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN- 180

Query: 207 ELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLE 266
           ++  L+       L+ L  D N  I  + ++     ++   L  L  S     +    + 
Sbjct: 181 KITELDVSQN-KLLNRLNCDTN-NI--TKLD----LNQNIQLTFLDCSSN--KLTEIDVT 230

Query: 267 DKRLGTALPLPA-SLTSLWIEDFPNLERLSSS--------IVDLQNLTILQLIDCPKLKY 317
                T        LT L +     L  L           +     L   Q   C K+K 
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 318 FPEKGLPSSLLELWIWDCPL 337
                    L  L      +
Sbjct: 291 LDVTHNT-QLYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 48/273 (17%), Positives = 82/273 (30%), Gaps = 44/273 (16%)

Query: 65  LEELRICSCRSLTCIF-SKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIA------- 116
           +  L +    +LT +    N+L     +L+V  L   L  L      KL  +        
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKL----TNLDVTPLT-KLTYLNCDTN-KLTKLDVSQNPLL 129

Query: 117 ERLD-NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV----------SFTE 165
             L+    +L  ID+S+   L  L    H  +++ K+++     L               
Sbjct: 130 TYLNCARNTLTEIDVSHNTQLTEL--DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV 187

Query: 166 GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEI 225
                  L RL+      +  L   L+    L  L      +L  ++   L T L   + 
Sbjct: 188 SQNK--LLNRLNCDTN-NITKLD--LNQNIQLTFLDCS-SNKLTEIDVTPL-TQLTYFDC 240

Query: 226 DGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWI 285
             N     + ++        S L  L     D  ++   L                 +  
Sbjct: 241 SVNP---LTELD----VSTLSKLTTLHCIQTD--LLEIDLTHNTQLIYFQA-EGCRKIKE 290

Query: 286 EDFPNLERLSSSIVDLQNLTILQLIDCPKLKYF 318
            D  +  +L         +T L L   PKL Y 
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 47/250 (18%), Positives = 75/250 (30%), Gaps = 29/250 (11%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
            +  S   +      +     +   +L ++D  N   +  +  G+  L  L K+      
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSN- 74

Query: 159 NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPT 218
           N+ +          LT L      +L  L   +  LT L  L      +L  L+    P 
Sbjct: 75  NITTLDLSQNT--NLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN-KLTKLDVSQNP- 127

Query: 219 NLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPA 278
            L  L    N  +  + I+        + L  L                 +L T L    
Sbjct: 128 LLTYLNCARN-TL--TEID----VSHNTQLTELDCHLNKKITKLDVTPQTQL-TTLDCSF 179

Query: 279 -SLTSLWIEDFPNLERLS------SSIVDLQNLTILQLIDCP--KLKYFPEKGLPSSLLE 329
             +T L +     L RL+      + + DL     L  +DC   KL       L   L  
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLT-QLTY 237

Query: 330 LWIWDCPLIE 339
                 PL E
Sbjct: 238 FDCSVNPLTE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 99  PSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGL-HNLRQLQKIEIWE 156
            +L +L +    +L +I        + L+ + + N   ++ +PS   + +  L+++++ E
Sbjct: 112 ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGE 169

Query: 157 CENLVSFTEG---GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE 213
            + L   +EG   GL    L  L++  C  L  +P  L  L  L EL +  G  L ++  
Sbjct: 170 LKRLSYISEGAFEGLS--NLRYLNLAMC-NLREIP-NLTPLIKLDELDLS-GNHLSAIRP 224

Query: 214 DGLP--TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255
                  +L  L +  + +I    IE    F    SL  + ++ 
Sbjct: 225 GSFQGLMHLQKLWMIQS-QI--QVIERN-AFDNLQSLVEINLAH 264

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 57/353 (16%), Positives = 104/353 (29%), Gaps = 55/353 (15%)

Query: 1   MCDTNSSLEILEIWVCH----SLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSS 56
           + +    L+ +           L  +A       L+ L++  C    T    +G+ S  +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAK-ARADDLETLKLDKCSGFTT----DGLLSIVT 161

Query: 57  SRRYTSYLLEELRICSCRSLTCIFSK-NELPATLESLEVGNLP----------------- 98
             R     ++ L +             +EL     SLEV N                   
Sbjct: 162 HCRK----IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 99  --PSLRSLYVSHCSKLE--SIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEI 154
              SL S+ V     LE     +   N        ++    +      L   R+L ++ +
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 155 WECENLVSFTEGGLPCAKLTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPSLEE 213
                           A++ +LD+       E     +    +L+ L     +    LE 
Sbjct: 278 SYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 214 DGLP-TNLHSLEIDGNMEIWKSTIEWGR----GFHRFS----SLRRLAISGCDDDMVSFP 264
                  L  L I+   +      E G     G    +     L  +A+   D    S  
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL- 395

Query: 265 LEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKY 317
              + +GT L    +L    +      ER++   +D    ++L    C KL+ 
Sbjct: 396 ---ESIGTYLK---NLCDFRLVLLDREERITDLPLDNGVRSLLI--GCKKLRR 440

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 41/353 (11%), Positives = 99/353 (28%), Gaps = 62/353 (17%)

Query: 6   SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
            SL  +++     L  +   +   +L++      +    +      +   +         
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP-----EKYMNLVFPRKLCR 274

Query: 66  EELRICSCRSLTCIFSKNELPATLESLEVGNLP-------------PSLRSLYVSHCSKL 112
             L       +  +F      A +  L++                 P+L  L   +    
Sbjct: 275 LGLSYMGPNEMPILFP---FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331

Query: 113 ESIAERLDNNTSLETIDISNCESLKILPSGL------------HNLRQLQKIEIWECENL 160
             +         L+ + I      + +                   ++L+ + +    ++
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390

Query: 161 --VSFTEGGLPCAKLTRLDIYDCER------------LEALPKGLHNLTSLQELTIGKGV 206
              S    G     L    +   +R            + +L  G   L          G+
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

Query: 207 ELPSLEEDG-LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPL 265
               L   G    N+  + +    E  +  +E+ RG      L++L + GC         
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKLEMRGC-------CF 500

Query: 266 EDKRLGTALPLPASLTSLWIEDFP---NLERLSSSIVDLQNLTILQLIDCPKL 315
            ++ +  A+    SL  LW++ +      + L        N+ ++     P++
Sbjct: 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 33/178 (18%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88
            +L +L +S C       ++  + S S         L+EL +  C   T           
Sbjct: 142 SNLVRLNLSGCSGFSEFALQTLLSSCSR--------LDELNLSWCFDFT--------EKH 185

Query: 89  LESLEVGNLPPSLRSLYVSHCSKL---ESIAERLDNNTSLETIDISNCESL--KILPSGL 143
           ++   V ++  ++  L +S   K      ++  +    +L  +D+S+   L         
Sbjct: 186 VQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-F 243

Query: 144 HNLRQLQKIEIWECENLVSFTEGGL----PCAKLTRLDIYDC---ERLEALPKGLHNL 194
             L  LQ + +  C ++       L        L  L ++       L+ L + L +L
Sbjct: 244 FQLNYLQHLSLSRCYDI---IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 17/113 (15%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESL--KILPSGLHNLRQLQKIEIWE 156
             L++L +      + I   L  N++L  +++S C       L + L +  +L ++ +  
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

Query: 157 CENLVSFTEGGL------PCAKLTRLDIYDCER------LEALPKGLHNLTSL 197
           C +    TE  +          +T+L++    +      L  L +   NL  L
Sbjct: 178 CFDF---TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 58/264 (21%), Positives = 97/264 (36%), Gaps = 57/264 (21%)

Query: 71  CSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETID 129
           CS   L        +P          + P    L + +   +  +  +       L  + 
Sbjct: 40  CSDLGLK------AVPK--------EISPDTTLLDLQNN-DISELRKDDFKGLQHLYALV 84

Query: 130 ISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPK 189
           + N +  KI       LR+LQK+ I +  N +      LP + L  L I+D  R+  +PK
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISK--NHLVEIPPNLP-SSLVELRIHDN-RIRKVPK 140

Query: 190 G-LHNLTSLQELTIG--------------KGVELPSLE---------EDGLPTNLHSLEI 225
           G    L ++  + +G               G++L  L             LP  L+ L +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200

Query: 226 DGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWI 285
           D N +I    IE      R+S L RL +           +     G+   LP +L  L +
Sbjct: 201 DHN-KI--QAIE-LEDLLRYSKLYRLGLGHN-------QIRMIENGSLSFLP-TLRELHL 248

Query: 286 EDFPNLERLSSSIVDLQNLTILQL 309
            D   L R+ + + DL+ L ++ L
Sbjct: 249 -DNNKLSRVPAGLPDLKLLQVVYL 271

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 25/226 (11%), Positives = 77/226 (34%), Gaps = 13/226 (5%)

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSG--LHN 145
           +  +         +++Y+++  K+  + +      + ++ +D+   E +  +       +
Sbjct: 111 ISRVSCSRGQ-GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAAS 167

Query: 146 LRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG-- 203
              L+ + +    N +   +G +  AKL  LD+    +L  +     +   +  +++   
Sbjct: 168 SDTLEHLNLQY--NFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224

Query: 204 KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSF 263
           K V +   +      NL   ++ GN     +  ++     R  ++ +  +          
Sbjct: 225 KLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 264 PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQL 309
                           L + + +    L+R   +++  Q     +L
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 36/292 (12%), Positives = 85/292 (29%), Gaps = 46/292 (15%)

Query: 93  EVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKI 152
           E+       +   V+  S  +++A    +  +++ +D+S     +I  + L    +L+ +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 153 EIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPKG-----------------LHNL 194
            +     L    +   L    L  LD+ +   ++ L  G                     
Sbjct: 64  NLSSN-VLYETLDLESLS--TLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 195 TSLQELTIG--KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLA 252
              + + +   K   L  L+E      +  L++  N EI   T+ +        +L  L 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLN-EI--DTVNFAELAASSDTLEHLN 175

Query: 253 ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPN--LERLSSSIVDLQNLTILQLI 310
           +                +   +        L   D  +  L  +         +T + L 
Sbjct: 176 LQYN------------FI-YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 311 DCPKLKYFPEK-GLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSI 361
           +  KL    +      +L    +           +D       +  +   ++
Sbjct: 223 NN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 52/276 (18%)

Query: 27  LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYL-LEELRICSCRSLTCI-FSKNE 84
           L   L  +      ++    V++   +              +      +SL  + F+ N+
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 85  LPATLESLEVGNLPPSLRSLYVSHC--SKLESIAERLDNNTSLETIDISNCESLKILPSG 142
                 +       PSL  L +S    S     ++     TSL+ +D+S    +  + S 
Sbjct: 337 G----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN 391

Query: 143 LHNLRQLQKIEIWECENLVSFTEGGL--PCAKLTRLDIYDCERLEALPKG-LHNLTSLQE 199
              L QL+ ++     NL   +E  +      L  LDI           G  + L+SL+ 
Sbjct: 392 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEV 449

Query: 200 L---------TIGKGV--ELPSLEE----------------DGLPTNLHSLEIDGN-MEI 231
           L              +  EL +L                  + L ++L  L +  N ++ 
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMASNQLKS 508

Query: 232 WKSTIEWGRGFHRFSSLRRLAISG----CDDDMVSF 263
               I     F R +SL+++ +      C    + +
Sbjct: 509 VPDGI-----FDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 55/337 (16%), Positives = 107/337 (31%), Gaps = 55/337 (16%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88
            +LK+L ++    I++  + E   + ++        LE L + S + +  I         
Sbjct: 124 KTLKELNVAHN-LIQSFKLPEYFSNLTN--------LEHLDLSSNK-IQSI-----YCTD 168

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDIS-NCESLKILPSGLHNLR 147
           L  L    +P    SL +S    +  I         L  + +  N +SL ++ + +  L 
Sbjct: 169 LRVL--HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 148 QLQKIEIWECE-----NLVSFTEG---GLPCAKLTRLDIYDCE-RLEALPKGLHNLTSLQ 198
            L+   +   E     NL  F +    GL    +    +   +  L+ +    + LT++ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 199 ELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKST---------------IEWGRGFH 243
             ++   V +  +++         LE+         T                       
Sbjct: 286 SFSL-VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN 303
              SL  L +S                  +     SL  L +  F  +  +SS+ + L+ 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCC------SQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQ 397

Query: 304 LTILQLIDCPKLKYFPEKGL---PSSLLELWIWDCPL 337
           L  L       LK   E  +     +L+ L I     
Sbjct: 398 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 55/305 (18%), Positives = 85/305 (27%), Gaps = 87/305 (28%)

Query: 71  CSCRSLTCIFSKNEL---PATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLE 126
           CSC       +   L   P          +P S   L +    KL+S+     D  T L 
Sbjct: 5   CSCSGTEIRCNSKGLTSVPT--------GIPSSATRLELESN-KLQSLPHGVFDKLTQLT 55

Query: 127 TIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEA 186
            + +S+                L            S ++ G     L  LD+     +  
Sbjct: 56  KLSLSSN--------------GLSFKGCC------SQSDFGTT--SLKYLDLSFN-GVIT 92

Query: 187 LPKGLHNLTSLQELTIG---------KGV--ELPSLEE----------------DGLPTN 219
           +      L  L+ L              V   L +L                  +GL  +
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-S 151

Query: 220 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS 279
           L  L++ GN             F    +L  L +S C        LE         L  S
Sbjct: 152 LEVLKMAGNSFQ--ENFLPD-IFTELRNLTFLDLSQC-------QLEQLSPTAFNSLS-S 200

Query: 280 LTSLWIEDFPN-LERLSSSI-VDLQNLTILQLIDCPKLKYFPE---KGLPSSLLELWI-- 332
           L  L +    N    L +     L +L +L       +    +   +  PSSL  L +  
Sbjct: 201 LQVLNMSH--NNFFSLDTFPYKCLNSLQVLDY-SLNHIMTSKKQELQHFPSSLAFLNLTQ 257

Query: 333 --WDC 335
             + C
Sbjct: 258 NDFAC 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 32/275 (11%), Positives = 81/275 (29%), Gaps = 32/275 (11%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
              +   V+  S  +++A    +  +++ +D+S     +I  + L    +L+ + +    
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN- 68

Query: 159 NLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLP 217
            L    +   L    L  LD+ +   ++ L        S++ L       +  +      
Sbjct: 69  VLYETLDLESLS--TLRTLDLNNN-YVQELL----VGPSIETLHAA-NNNISRVSCSRGQ 120

Query: 218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLG------ 271
               ++ +  N +I  + +         S ++ L +   + D V+F              
Sbjct: 121 -GKKNIYLANN-KI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 272 ------TALPLPASLTSLWIEDFPN--LERLSSSIVDLQNLTILQLIDCPKLKYFPEK-G 322
                   +        L   D  +  L  +         +T + L +  KL    +   
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR 234

Query: 323 LPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIP 357
              +L    +           +D       +  + 
Sbjct: 235 FSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ 148
           +  ++   +   L++L +S   KL  +     +   +  I + N   L ++   L   + 
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN 238

Query: 149 LQKIEI----WECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGK 204
           L+  ++    + C  L  F        ++  +     ++L    +    + +L       
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQ---RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 205 GVELPSLEEDGL 216
             +LP+   D L
Sbjct: 296 CEDLPAPFADRL 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 49/290 (16%), Positives = 96/290 (33%), Gaps = 57/290 (19%)

Query: 70  ICSC--RSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLE 126
           IC     SL  I S               L  +++SL +S+ +++  I+   L    +L+
Sbjct: 35  ICKGSSGSLNSIPS--------------GLTEAVKSLDLSN-NRITYISNSDLQRCVNLQ 79

Query: 127 TIDISNCESLKILPSGL-HNLRQLQKIEIWECENLVSFTEG---GLPCAKLTRLDIYDCE 182
            + +++   +  +      +L  L+ +++     L + +      L    LT L++    
Sbjct: 80  ALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLS--SLTFLNLLGN- 134

Query: 183 RLEALPKG--LHNLTSLQELTIGKGVELPSLEE---DGLPTNLHSLEIDGN--MEIWKST 235
             + L +     +LT LQ L +G       ++     GL T L  LEID +        +
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKS 193

Query: 236 IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFP----NL 291
                      ++  L +                         S+  L + D      + 
Sbjct: 194 ------LKSIQNVSHLILHMK-------QHILLLEIFVDVTS-SVECLELRDTDLDTFHF 239

Query: 292 ERLSS----SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPL 337
             LS+    S++       +++ D    +        S LLEL      L
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 27/183 (14%)

Query: 99  PSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWEC 157
             L+ L V +      I  +     T LE ++I   +     P  L +++ +  + +   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 158 ENLVSFTEG---GLPCAKLTRLDIYD----CERLEALPKG----LHNLTSLQELTIGKGV 206
              +   E          +  L++ D          L  G    L    + + + I    
Sbjct: 209 -QHILLLEIFVDVTS--SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI-TDE 264

Query: 207 ELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG----CDDDM 260
            L  + +  + +   L  LE   N  +   ++  G  F R +SL+++ +      C    
Sbjct: 265 SLFQVMKLLNQIS-GLLELEFSRNQ-L--KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPR 319

Query: 261 VSF 263
           + +
Sbjct: 320 IDY 322

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 96  NLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIW 155
           +LP ++  L ++H       A      + L ++D+      K+ P     L  L+ + + 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 156 ECENLVSFTEGGL-PCAKLTRLDIYDCERLEALPKG-LHNLTSLQELTIG----KGVELP 209
               L   ++     C  LT L +     ++ +         +L  L +        +L 
Sbjct: 82  HN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 210 SLEEDGLPTNLHSLEIDGN 228
           +     L  NL  L +  N
Sbjct: 140 TQV--QLE-NLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 55/327 (16%), Positives = 95/327 (29%), Gaps = 68/327 (20%)

Query: 80  FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKIL 139
            S ++L  T  +  +G    +L  L +S+ +      +       LE   +       + 
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 140 PSGLHNLRQLQK-----------IEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP 188
              LH L  ++            I +     +  F+   L    L  L++ D +      
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK--CLEHLNMEDNDIPGIKS 346

Query: 189 KGLHNLTSLQELTIG----KGVELPSLEEDGLP-TNLHSLEIDGNMEIWKSTIEWGRGFH 243
                L +L+ L++         L +     L  + LH L +  N +I  S IE    F 
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KI--SKIESD-AFS 402

Query: 244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPA--SLTSL----------------WI 285
               L  L +                +G  L       L ++                  
Sbjct: 403 WLGHLEVLDLGLN------------EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 286 EDFPNLERLS-------------SSIVDLQNLTILQLIDCPKLKYFPEKGLPS--SLLEL 330
              P+L+RL              S    L+NLTIL L +   +    +  L     L  L
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509

Query: 331 WIWDCPLIEEKCRKDGGQYWNLLTHIP 357
            +    L       + G     L  + 
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLS 536

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
            +L  L +            L   TSL  +DIS+      + + ++ L ++  I++    
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 159 NLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG 203
            +        LP  +L  L+I     +    +G+ +   L +L   
Sbjct: 148 AITDIMPLKTLP--ELKSLNIQFD-GVHDY-RGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 10/157 (6%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
            SL  + +++   +  +   ++   +++ + I+N  +     + +  L  L+++ I   +
Sbjct: 44  NSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 159 NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPT 218
                         LT LDI      +++   ++ L  +  + +     +  +       
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 219 NLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG 255
            L SL I  +  +         G   F  L +L    
Sbjct: 160 ELKSLNIQFD-GV--HDYR---GIEDFPKLNQLYAFS 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 48/305 (15%), Positives = 96/305 (31%), Gaps = 38/305 (12%)

Query: 49  EGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH 108
           + +   +    + S L +        +LT + +      +   +       ++    +S+
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLT-LNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 109 CSKLESIAERLDN--NTSLETIDISNCES--LKILPSGL-HNLRQLQKIEIWECENLVSF 163
                 +  R  +   TSL+ + I    S       S +      +              
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RM 314

Query: 164 TEGGLP--CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-----DGL 216
                P   +    LD  +    + + +   +LT L+ L + +  +L  L +       +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL-QMNQLKELSKIAEMTTQM 373

Query: 217 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPL 276
             +L  L+I  N     S  E         SL  L +S        F            L
Sbjct: 374 -KSLQQLDISQN---SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC----------L 419

Query: 277 PASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPS--SLLELWI-- 332
           P  +  L +     ++ +   +V L+ L  L +    +LK  P+       SL ++W+  
Sbjct: 420 PPRIKVLDL-HSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

Query: 333 --WDC 335
             WDC
Sbjct: 478 NPWDC 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 56/336 (16%), Positives = 102/336 (30%), Gaps = 52/336 (15%)

Query: 27  LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP 86
           LP S + L  S    + T+        +++  R  +  L  L +          ++ ++ 
Sbjct: 31  LPNSTECLEFSFN-VLPTI-------QNTTFSRLIN--LTFLDL----------TRCQI- 69

Query: 87  ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNL 146
             +      +    L +L ++    +      L    +L+ +         I    LHN 
Sbjct: 70  YWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 147 RQLQKIEIWECENLVSFTEGGL-PCAKLTRLDIYDCERLEALPKG-LHNLTSLQELTIG- 203
           + L+ + +    ++ S       P  KL  LD  +   +  L K  + +L     L++  
Sbjct: 129 KTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNL 186

Query: 204 KGVELPSLEEDGLP-TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS 262
            G ++  +E          SL   G        I  G       SL        DD+ +S
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 263 ---FPLEDKRLGTALPLPA-SLTSLWIEDFPNLERL-------------SSSIVDLQNLT 305
              F    +    ++ L      ++    F     L              S +V L  L 
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLK 304

Query: 306 ILQLIDCPKLKYFPE---KGLPSSLLELWIWDCPLI 338
            L L    K +   +      P SL  L I      
Sbjct: 305 KLVLSAN-KFENLCQISASNFP-SLTHLSIKGNTKR 338

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
             L  L + H   L   A  L N   L  +D+S  E  KI+      +++L+++ I    
Sbjct: 226 VELTILKLQHN-NLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI-SNN 282

Query: 159 NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPT 218
            LV+    G P   L  LD+     L  + +       L+ L +     + +L+      
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD-HNSIVTLKLSTHH- 339

Query: 219 NLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCD 257
            L +L +  N        +       F ++ R A+   D
Sbjct: 340 TLKNLTLSHND------WDCNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 45/310 (14%), Positives = 100/310 (32%), Gaps = 56/310 (18%)

Query: 37  SDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGN 96
               N++   V   +     ++    +  E++ + + + +T  F  + +   L +  + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQD-VYFGFEDITLNNQKIVT--FKNSTM-RKLPAALLDS 67

Query: 97  LPPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEI 154
               +  L ++   ++E I         +++ + +    +++ LP     N+  L  + +
Sbjct: 68  FR-QVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL 124

Query: 155 WEC--ENLVSFTEGGLPCAKLTRLDIYDCERLEALPKG-LHNLTSLQEL--------TIG 203
                 +L        P  KLT L + +   LE +        TSLQ L         + 
Sbjct: 125 ERNDLSSLPRGIFHNTP--KLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 204 KGVELPSLEEDGL----------PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI 253
             + +PSL    +          P  +  L+   N  I  + +           L  L +
Sbjct: 182 LSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHN-SI--NVVR----GPVNVELTILKL 233

Query: 254 SGCDDDMVSFPLEDKRLG---------TALPLPA-----SLTSLWIEDFPNLERLSSSIV 299
              +    ++ L    L            +          L  L+I +   L  L+    
Sbjct: 234 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQ 292

Query: 300 DLQNLTILQL 309
            +  L +L L
Sbjct: 293 PIPTLKVLDL 302

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 42/259 (16%), Positives = 80/259 (30%), Gaps = 44/259 (16%)

Query: 99  PSLRSLYVSHCSKLESIAERL-DNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWE 156
           P L  L +     L S+   +  N   L T+ +SN  +L+ +          LQ +++  
Sbjct: 117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS 174

Query: 157 CENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGL 216
              L       +P   L   ++     L  L        +++EL       +  +     
Sbjct: 175 N-RLTHVDLSLIP--SLFHANVSYN-LLSTLA----IPIAVEELDAS-HNSINVVRGPVN 225

Query: 217 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP---------LED 267
              L  L++  N  +  +   W      +  L  + +S  +  +             LE 
Sbjct: 226 -VELTILKLQHN-NL--TDTAW---LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLER 276

Query: 268 KRLG----TALPLP-ASLTSLWIEDFPN--LERLSSSIVDLQNLTILQLIDCPKLKYFPE 320
             +      AL L    + +L + D  +  L  +  +      L  L L     +     
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKL 335

Query: 321 KGLPSSLLELWI----WDC 335
                +L  L +    WDC
Sbjct: 336 STHH-TLKNLTLSHNDWDC 353

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 50/271 (18%), Positives = 91/271 (33%), Gaps = 60/271 (22%)

Query: 99  PSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE 158
            S+  +  ++   ++S+ + +    ++  + ++  +   I    L NL+ L  + +   E
Sbjct: 46  NSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFL--DE 99

Query: 159 NLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG--KGVELPSLEEDGL 216
           N V          KL  L +     +  +  GL +L  L+ L +G  K  ++  L    L
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDITVLS--RL 155

Query: 217 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPL 276
            T L +L ++ N +I  S I         + L+ L +S                      
Sbjct: 156 -TKLDTLSLEDN-QI--SDIV---PLAGLTKLQNLYLSKNH------------------- 189

Query: 277 PASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCP-KLKYFPEKGLPSSLLELWIWDC 335
                   I D   L         L+NL +L+L       K    +        +   D 
Sbjct: 190 --------ISDLRALA-------GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 336 PLIEEKCRKDGGQY------WNLLTHIPYVS 360
            L+  +   D G Y      W+L      VS
Sbjct: 235 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 49/183 (26%)

Query: 26  QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85
            LP     L   D  + R  T+ E   S           L+ L + + + LT +    EL
Sbjct: 94  SLPELPASLEYLDACDNRLSTLPELPAS-----------LKHLDVDNNQ-LTML---PEL 138

Query: 86  PATLESLEVGN--------LPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLK 137
           PA LE +   N        LP SL  L V +  +L  + E  ++   LE +D+S    L+
Sbjct: 139 PALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTFLPELPES---LEALDVSTNL-LE 193

Query: 138 ILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSL 197
            LP+        ++ EI+                        +  R+  +P+ + +L   
Sbjct: 194 SLPAVPVRNHHSEETEIF--------------------FRCREN-RITHIPENILSLDPT 232

Query: 198 QEL 200
             +
Sbjct: 233 CTI 235

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 46/321 (14%), Positives = 92/321 (28%), Gaps = 39/321 (12%)

Query: 26  QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85
            +P S K + +S    ++ L        S S   ++   L+ L +          S+ E+
Sbjct: 29  DIPSSTKNIDLSFN-PLKIL-------KSYSFSNFSE--LQWLDL----------SRCEI 68

Query: 86  PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHN 145
             T+E      L   L +L ++               TSLE +     +   +    +  
Sbjct: 69  -ETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 146 LRQLQKIEIWECENLVSFTEGGL--PCAKLTRLDIYDCERLEALPK----GLHNLT-SLQ 198
           L  L+K+ +     + S            L  +D+     ++ +       L        
Sbjct: 127 LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNL 184

Query: 199 ELTIGKGVELPSLEEDGL-PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCD 257
            L +     +  +++       LH L + GN                 + L    +   +
Sbjct: 185 SLDMS-LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM---KTCLQNLAGLHVHRLILGE 240

Query: 258 DDMVSFPLEDKRLGTALPLPA-SLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK 316
                  LE         L   ++    +    +          L N++ + L     +K
Sbjct: 241 FKDER-NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIK 298

Query: 317 YFPEKGLPSSLLELWIWDCPL 337
           Y  +         L I  C L
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 10/165 (6%)

Query: 70  ICSCRSLTCI-FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETI 128
                 L  + F  + L    E     +L   L  L +S+ +            TSL T+
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 129 DIS-NCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP-CAKLTRLDIYDCERLEA 186
            ++ N      L +   N   L  +++ +C  L   + G      +L  L++     L  
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLF 511

Query: 187 LPKG-LHNLTSLQELTIGKGVELPSLEED--GLPTNLHSLEIDGN 228
           L     + L SL  L       + + +      P +L    +  N
Sbjct: 512 LDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 99  PSLRSLYVSHCSKLESIAER--LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWE 156
             L+ L   H S L+ + E     +   L  +DIS   +          L  L  +++  
Sbjct: 399 EELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 157 CENLVSFTEGGL--PCAKLTRLDIYDCERLEALPKG-LHNLTSLQELTIGKGVELPSLEE 213
             +    T   +      LT LD+  C +LE +  G    L  LQ L +     L  L+ 
Sbjct: 458 N-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMS-HNNLLFLDS 514

Query: 214 DGLP--TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG----CDDDMVSF 263
                  +L +L+   N  I   T + G   H   SL    ++     C  +   F
Sbjct: 515 SHYNQLYSLSTLDCSFNR-I--ETSK-GILQHFPKSLAFFNLTNNSVACICEHQKF 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 37/257 (14%), Positives = 85/257 (33%), Gaps = 33/257 (12%)

Query: 71  CSCRSLTCIFSKNELPAT---------LESLEVGNLP--PSLRSLYVSHCSKLESIAER- 118
               +LT +     L  T         + ++   + P    L+ L +       +I +  
Sbjct: 11  YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 119 LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGL--PCAKLTRL 176
             N  +L  +D+ + +   + P     L  L ++ ++ C    +  + G       LTRL
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 177 DIYDCERLEALPKG--LHNLTSLQELTIGKGVELPSLEEDGL----PTNLHSLEIDGNME 230
           D+    ++ +L        L SL+ +      ++  + E  L       L    +  N  
Sbjct: 129 DLSKN-QIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 231 IWKSTIEWGRGFHRFS--SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 288
             + +++WG+  + F    L  L +SG               G      +   +  +   
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGN-------GWTVDITGNFSNAISKSQAFSLILA 239

Query: 289 PNLERLSSSIVDLQNLT 305
            ++        ++++  
Sbjct: 240 HHIMGAGFGFHNIKDPD 256

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 37/317 (11%), Positives = 96/317 (30%), Gaps = 29/317 (9%)

Query: 29  PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT 88
            +L    ++       L     +        + + +LE L +      T   + N     
Sbjct: 174 KTLSFFSLAANS----LYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGN-FSNA 227

Query: 89  LESLEVGNL--PPSLRSLYVSHCSKLESIAERL---DNNTSLETIDISNCESLKILPSGL 143
           +   +  +L     +          ++   +        +S+  +D+S+     +     
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGF-HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 144 HNLRQLQKIEIWECENLVSFTEGGL--PCAKLTRLDIYDCERLEALPKG-LHNLTSLQEL 200
             L+ L+ + +    N ++            L  L++     L  L     + L  +  +
Sbjct: 287 ETLKDLKVLNL--AYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYI 343

Query: 201 TIGKGVELPSLEEDGLP--TNLHSLEIDGN----MEIWKSTIEWGRGFHRFSSLRRLAIS 254
            +     +  +++        L +L++  N    +    S  +     ++  +L ++ ++
Sbjct: 344 DLQ-KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 255 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSS--IVDLQNLTILQLIDC 312
                +    LE+  +   L     L  L +         S      +  +L  L L + 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 313 PKLKYFPEKGLPSSLLE 329
             L+   E  L   + E
Sbjct: 462 -MLQLAWETELCWDVFE 477

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 121 NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECEN-----LVSFTEGGLPCAKLTR 175
           +   ++ ID ++   + I    +  L+ ++KI + +C       L   ++       +  
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118

Query: 176 LDIYDCERL-EALPKGLHNLTSLQELTIG--KGVELPSLEEDGLPTNLHSLEID 226
           ++I  C  + +     LH+  +L+ L +    GV+          T+L SLE+ 
Sbjct: 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNC-----ESLKILPSGLHNLRQLQKIEIW 155
           ++++  +    +    + ++    +E I +  C       L+ L    +  + + ++EI 
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122

Query: 156 ECENLVSFTEGGL----PCAKLTRLDIYDCERLEALPKG-LHNLTSLQELTI 202
            C N+   T+ G+        L  L + D   ++   K      TSL  L +
Sbjct: 123 SCGNV---TDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 45/288 (15%), Positives = 84/288 (29%), Gaps = 55/288 (19%)

Query: 71  CSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDI 130
           CS      I     L        V  LP  +  + +S                S+  ++ 
Sbjct: 8   CSVIGYNAICINRGLHQ------VPELPAHVNYVDLSL--------------NSIAELN- 46

Query: 131 SNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG---GLPCAKLTRLDIYDCERLEAL 187
                     +    L+ LQ +++ +    +        GL    L  L +    +   L
Sbjct: 47  ---------ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS--SLIILKLDYN-QFLQL 94

Query: 188 PKG-LHNLTSLQELTIG----KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGF 242
             G  + L +L+ LT+      G  L       L T+L  L +  N  I    I+    F
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDN-NI--KKIQPASFF 150

Query: 243 HRFSSLRRLAISG----CDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSI 298
                   L ++        +      + K   T L L  S+T   + ++        + 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF-TLLRLS-SITLQDMNEYWLGWEKCGNP 208

Query: 299 VDLQNLTILQL----IDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKC 342
               ++T L L          K F +    + +  L + +   +    
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 15/139 (10%)

Query: 93  EVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKI 152
            + NL  +LR LY++    +  I+  L N T + ++++    +L    S L N+  L  +
Sbjct: 105 ALQNLT-NLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYL 160

Query: 153 EIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG--KGVELP 209
            + E   +   T    L    L  L +    ++E +   L +LTSL   T    +  ++ 
Sbjct: 161 TVTES-KVKDVTPIANLT--DLYSLSLNYN-QIEDIS-PLASLTSLHYFTAYVNQITDIT 215

Query: 210 SLEEDGLPTNLHSLEIDGN 228
            +    + T L+SL+I  N
Sbjct: 216 PVA--NM-TRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 32/237 (13%), Positives = 84/237 (35%), Gaps = 39/237 (16%)

Query: 6   SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLL 65
           + +  L +   H+L+ ++ +     L  L +++   ++ +T    +             L
Sbjct: 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTD-----------L 179

Query: 66  EELR-----------ICSCRSLTCIF-SKNELPATLESLEVGNLPPSLRSLYVSHCSKLE 113
             L            + S  SL       N++   +  +   N+   L SL + +  K+ 
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQI-TDITPV--ANMT-RLNSLKIGNN-KIT 234

Query: 114 SIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWEC--ENLVSFTEGGLPCA 171
            ++  L N + L  ++I   +   I  + + +L +L+ + +      ++       L   
Sbjct: 235 DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVL--NNLS-- 287

Query: 172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGN 228
           +L  L + + +      + +  LT+L  L +     +  +      + + S +    
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS-QNHITDIRPLASLSKMDSADFANQ 343

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 25/142 (17%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 89  LESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ 148
           ++SL       +L+ L++SH  ++  +   L + T LE + ++      +       L +
Sbjct: 53  IQSLAGMQFFTNLKELHLSHN-QISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSR 110

Query: 149 L--QKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGV 206
           L     E+ + ++L+           L  L I +  +L+++   L  L+ L+ L +  G 
Sbjct: 111 LFLDNNELRDTDSLIHLK-------NLEILSIRNN-KLKSIV-MLGFLSKLEVLDLH-GN 160

Query: 207 ELPSLEEDGLPTNLHSLEIDGN 228
           E+ +         ++ +++ G 
Sbjct: 161 EITNTGGLTRLKKVNWIDLTGQ 182

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 99  PSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWE 156
             L  L +S  ++L S+          L T+ +  C  L+ L  G    L  LQ + + +
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQD 138

Query: 157 CENLVSFTEGGL-PCAKLTRLDIYDCERLEALPKG-LHNLTSLQELTIGKGVELPSLEE- 213
              L +  +        LT L ++   R+ ++P+     L SL  L + +   +  +   
Sbjct: 139 N-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPH 195

Query: 214 --DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG----CDDDMVSFP 264
               L   L +L +  N     S +          +L+ L ++     CD       
Sbjct: 196 AFRDLG-RLMTLYLFANN---LSALPTE-ALAPLRALQYLRLNDNPWVCDCRARPLW 247

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 18/140 (12%)

Query: 70  ICSCRSLTCI-FSKNELPATLESLEVGNLPPSLRSLYVSHCS---KLESIAERLDNNTSL 125
           + SC  L  +  S N L    +      L  SL  L +S  S            D    L
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLP----CAKLTRLDIYDC 181
           + + IS  +    +         L+ +++       +F+  G+P    C+ L  LDI   
Sbjct: 181 KHLAISGNKISGDVDVS--RCVNLEFLDVSSN----NFS-TGIPFLGDCSALQHLDISGN 233

Query: 182 ERLE-ALPKGLHNLTSLQEL 200
            +L     + +   T L+ L
Sbjct: 234 -KLSGDFSRAISTCTELKLL 252

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 70  ICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETID 129
           I   R+L  +  + E      +L+  + P     L       L   +        +  + 
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 130 ISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGL-PCAKLTRLDIYDCERLEALP 188
           +++ +   +    L  L  +  +++    N +      L     L  L   D   LE + 
Sbjct: 448 LAHKDLTVL--CHLEQLLLVTHLDL--SHNRLRALPPALAALRCLEVLQASDN-ALENVD 502

Query: 189 KGLHNLTSLQELTIG--KGVELPSLEEDGLPTNLHSLEIDGN 228
            G+ NL  LQEL +   +  +  +++       L  L + GN
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 45/322 (13%), Positives = 106/322 (32%), Gaps = 29/322 (9%)

Query: 26  QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL 85
            L      + ++   +++   ++   ++      + S L     + +        +    
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 86  PATLESLEVGNLPPSLRSLYVSHCSKLESIAERL--DNNTSLETIDISNCESLKI--LPS 141
               +       P  +  L + + +  E I       + T+L+++ I + ++        
Sbjct: 267 VKLFQFFW----PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 142 GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL 200
            L+++     I++    +            +  T L+       +++ +G   L  LQ L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 201 TIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDD 259
            + +   L +  +   +  N+ SLE         ++  + R      S+  L +S     
Sbjct: 383 IL-QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 260 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP 319
              F            LP  +  L + +   +  +   +  LQ L  L +    +LK  P
Sbjct: 442 GSVFR----------CLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNV-ASNQLKSVP 489

Query: 320 EKGLPS--SLLELWI----WDC 335
           +       SL  +W+    WDC
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDC 511

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 91  SLEVGNLPPS-LRSLYVSHC-SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ 148
            LE+ N  PS ++ L + +  S    +    D    LE +   N     I  + L  L +
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK 65

Query: 149 LQKIEIWECENLVSFTEGGLP--CAKLTRLD-----IYDCERLEALPKGLHNLTSL 197
           L+K+E+   +N VS     L   C  LT L+     I D   +E L K L NL SL
Sbjct: 66  LKKLEL--SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL-KKLENLKSL 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 42/262 (16%)

Query: 83  NELPATLESLEV-GNLPP--SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKIL 139
           N  P   E   +  NL        +++   ++            + + +   N    K+ 
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 140 PSGLHNLRQLQKIEIWEC--ENLVSFTEGGLPCAKLTRLDIYDCERLEALPKG-LHNLTS 196
            + L + RQ++ + + +   E + ++         + +L +     +  LP     N+  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFN-AIRYLPPHVFQNVPL 124

Query: 197 LQELTIG--KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS 254
           L  L +       LP       P  L +L +  N  +    IE    F   +SL+ L +S
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNN-NL--ERIEDD-TFQATTSLQNLQLS 179

Query: 255 GC---DDDMVSFP------LEDKRLGTALPLPASLTSLWIED----------FPNLERLS 295
                  D+   P      +    L + L +P ++  L                 L  L 
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILK 238

Query: 296 ------SSIVDLQNLTILQLID 311
                 +    L N   L  +D
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVD 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.44
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.44
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.34
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.29
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.27
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.25
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.96
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.95
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.92
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.91
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.87
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.82
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.91
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.87

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=3e-24  Score=195.58  Aligned_cols=302  Identities=20%  Similarity=0.203  Sum_probs=201.1

Q ss_pred             CCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836            4 TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN   83 (380)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   83 (380)
                      .+++|+.|++.++ .+..++....+++|++|++++|. +..++.   +..++.        |++|+++++. +..+    
T Consensus        42 ~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~--------L~~L~L~~n~-i~~~----  103 (347)
T 4fmz_A           42 ELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP---LSNLVK--------LTNLYIGTNK-ITDI----  103 (347)
T ss_dssp             HHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCTT--------CCEEECCSSC-CCCC----
T ss_pred             hcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh---hhcCCc--------CCEEEccCCc-ccCc----
Confidence            5678999999886 55666666778999999999886 776663   566677        9999998873 3333    


Q ss_pred             CCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec
Q 035836           84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF  163 (380)
Q Consensus        84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  163 (380)
                        +      .+..++ +|++|++++|. +..++. +..+++|++|++++|.....++. +..+++|++|+++++ .+..+
T Consensus       104 --~------~~~~l~-~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~  170 (347)
T 4fmz_A          104 --S------ALQNLT-NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDV  170 (347)
T ss_dssp             --G------GGTTCT-TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCC
T ss_pred             --h------HHcCCC-cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCc
Confidence              1      355666 69999998875 555544 77888999999988766665543 777888888888874 44444


Q ss_pred             cCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836          164 TEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH  243 (380)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  243 (380)
                      +. +..+++|++|++++|. +..++. +..+++|+.|++++|.. ...+....+++|++|++++|..... ..     +.
T Consensus       171 ~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~n~l~~~-~~-----~~  240 (347)
T 4fmz_A          171 TP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKITDL-SP-----LA  240 (347)
T ss_dssp             GG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCC-GG-----GT
T ss_pred             hh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCC-CCCchhhcCCcCCEEEccCCccCCC-cc-----hh
Confidence            43 5567788888888764 334433 66677888888887743 3333355677888888888754332 22     55


Q ss_pred             CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCC-
Q 035836          244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKG-  322 (380)
Q Consensus       244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-  322 (380)
                      .+++|+.|++++ | .+..++. .       ..+++|++|+++++ .++.++ .+..+++|++|++++| .++..+... 
T Consensus       241 ~l~~L~~L~l~~-n-~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l  307 (347)
T 4fmz_A          241 NLSQLTWLEIGT-N-QISDINA-V-------KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVI  307 (347)
T ss_dssp             TCTTCCEEECCS-S-CCCCCGG-G-------TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHH
T ss_pred             cCCCCCEEECCC-C-ccCCChh-H-------hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHh
Confidence            677888888887 3 4444432 2       46678888888874 666664 5677788888888875 444433211 


Q ss_pred             -CcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceee
Q 035836          323 -LPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWV  366 (380)
Q Consensus       323 -~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (380)
                       -.++|++|++++|+.... .      .+..++.+..+.+.++.+
T Consensus       308 ~~l~~L~~L~L~~n~l~~~-~------~~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDI-R------PLASLSKMDSADFANQVI  345 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCC-G------GGGGCTTCSEESSSCC--
T ss_pred             hccccCCEEEccCCccccc-c------Chhhhhccceeehhhhcc
Confidence             245788888887763221 1      133455666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=9.3e-25  Score=219.06  Aligned_cols=263  Identities=18%  Similarity=0.130  Sum_probs=190.3

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|+++++.....+|..+..+++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            58888888876555778888888899999998876666778788888899999998865444667777778889999998


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD  258 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  258 (380)
                      +|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|......+..    +..+++|+.|++++ |.
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~-N~  549 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE----LGDCRSLIWLDLNT-NL  549 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG----GGGCTTCCEEECCS-SE
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCCCEEECCC-Cc
Confidence            8877777888888888999999998876555553 356788999999988765444321    56788899999887 44


Q ss_pred             CCccccccccc---------------------------------------------------------------ccCCCC
Q 035836          259 DMVSFPLEDKR---------------------------------------------------------------LGTALP  275 (380)
Q Consensus       259 ~l~~~~~~~~~---------------------------------------------------------------~~~~~~  275 (380)
                      ....+|.....                                                               ....+.
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            33344432211                                                               011234


Q ss_pred             CCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc-ccCCC-CCcccccEEEecCchhHHHHhhccCCCCCccc
Q 035836          276 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK-YFPEK-GLPSSLLELWIWDCPLIEEKCRKDGGQYWNLL  353 (380)
Q Consensus       276 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  353 (380)
                      .+++|++|+++++.--..+|..+.++++|+.|++++| .++ .+|.. +-.++|+.|++++|....     ...+.+..+
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g-----~ip~~l~~l  703 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDG-----RIPQAMSAL  703 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEE-----CCCGGGGGC
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccC-----cCChHHhCC
Confidence            4678889999985433467778889999999999984 454 55552 225688999998875432     344456667


Q ss_pred             cCcCeeEECceeeecCCCCC
Q 035836          354 THIPYVSIDYKWVFDDDPTE  373 (380)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~  373 (380)
                      +.+..+.+.++.+...+|..
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSS
T ss_pred             CCCCEEECcCCcccccCCCc
Confidence            78888888888888877754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=3.9e-25  Score=221.82  Aligned_cols=253  Identities=18%  Similarity=0.081  Sum_probs=154.2

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      +..++ +|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|
T Consensus       438 l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          438 LGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            34455 47777777776544666777777777777777765555667667777777777777754333566666667777


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-----------------------------------------
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-----------------------------------------  212 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-----------------------------------------  212 (380)
                      +.|++++|.....+|..+..+++|+.|++++|.....+|                                         
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence            777777776666777777777777777777664321111                                         


Q ss_pred             ------------------------------CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc
Q 035836          213 ------------------------------EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS  262 (380)
Q Consensus       213 ------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  262 (380)
                                                    ....+++|+.|++++|.....++. .   ++.+++|+.|++++ +.....
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~---l~~l~~L~~L~Ls~-N~l~g~  671 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E---IGSMPYLFILNLGH-NDISGS  671 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-G---GGGCTTCCEEECCS-SCCCSC
T ss_pred             ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-H---HhccccCCEEeCcC-CccCCC
Confidence                                          012245677778877764433332 1   55777888888887 444446


Q ss_pred             cccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHH--
Q 035836          263 FPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE--  340 (380)
Q Consensus       263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~--  340 (380)
                      +|...       ..+++|++|+++++.--..+|..+.++++|++|++++|+--..+|..+...++....+.+|+.++.  
T Consensus       672 ip~~l-------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          672 IPDEV-------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             CCGGG-------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred             CChHH-------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence            66665       467788888888843333667778888888888888854444566655444555555555554432  


Q ss_pred             --HhhccCCCCCccccCcCee
Q 035836          341 --KCRKDGGQYWNLLTHIPYV  359 (380)
Q Consensus       341 --~~~~~~~~~~~~~~~~~~~  359 (380)
                        .|....+++|++++|++..
T Consensus       745 l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          745 LPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             SCCCCSCC-------------
T ss_pred             CcCCCCCccCCCCCCCCcccc
Confidence              4677777888888887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=4.3e-24  Score=213.96  Aligned_cols=342  Identities=15%  Similarity=0.115  Sum_probs=242.1

Q ss_pred             CCCCCCccEEEEecCCCCc-----------------cccC-CC--CCCCCceEeecCCcCccccccccceecCCCCcccc
Q 035836            2 CDTNSSLEILEIWVCHSLT-----------------YIAG-VQ--LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYT   61 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~-----------------~~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~   61 (380)
                      ++++++|++|+|++|....                 .+|. ..  .+++|+.|++++|.-...+|.  .+..++.     
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~--~l~~L~~-----  516 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD--FLYDLPE-----  516 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG--GGGGCSS-----
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH--HHhCCCC-----
Confidence            5678999999999986433                 1666 33  689999999999986666774  4778888     


Q ss_pred             ccccceeEeecCCCccc--ccccCCCCcccccc--ccCCCCCCccEEEEecCCChhhhHh--hccCCCCccEEeecCCCC
Q 035836           62 SYLLEELRICSCRSLTC--IFSKNELPATLESL--EVGNLPPSLRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCES  135 (380)
Q Consensus        62 ~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~  135 (380)
                         |+.|+++++..++.  +      |..+..+  ....+| +|++|++++|. +..+|.  .+..+++|++|++++|. 
T Consensus       517 ---L~~L~Ls~N~~lsg~~i------P~~i~~L~~~~~~l~-~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-  584 (876)
T 4ecn_A          517 ---LQSLNIACNRGISAAQL------KADWTRLADDEDTGP-KIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-  584 (876)
T ss_dssp             ---CCEEECTTCTTSCHHHH------HHHHHHHHHCTTTTT-TCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-
T ss_pred             ---CCEEECcCCCCcccccc------hHHHHhhhhcccccC-CccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-
Confidence               99999999864443  2      3333322  234566 69999999986 558888  89999999999999955 


Q ss_pred             CCcccccccCCCCCcEEEccccccceeccCCCccCCC-CCEEeccCCCCcccccccCCCCC--CccEEEeccCCCCCCCC
Q 035836          136 LKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK-LTRLDIYDCERLEALPKGLHNLT--SLQELTIGKGVELPSLE  212 (380)
Q Consensus       136 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~  212 (380)
                      +..+| .+..+++|+.|+++++ .+..+|..+..+++ |+.|++++|. +..+|..+..++  +|+.|++++|.....++
T Consensus       585 l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          585 VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             cccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence            45888 7888999999999984 56688888888888 9999999976 447887776655  49999999986544433


Q ss_pred             CC------CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccccc-CCCCCCCCcceEec
Q 035836          213 ED------GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLG-TALPLPASLTSLWI  285 (380)
Q Consensus       213 ~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l  285 (380)
                      ..      ...++|+.|++++|... .++..+   +..+++|+.|++++  +.+..++....... .....+++|++|++
T Consensus       662 ~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~---~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~~~~l~nl~~L~~L~L  735 (876)
T 4ecn_A          662 NISCSMDDYKGINASTVTLSYNEIQ-KFPTEL---FATGSPISTIILSN--NLMTSIPENSLKPKDGNYKNTYLLTTIDL  735 (876)
T ss_dssp             SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH---HHTTCCCSEEECCS--CCCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred             cchhhhccccCCCcCEEEccCCcCC-ccCHHH---HccCCCCCEEECCC--CcCCccChHHhccccccccccCCccEEEC
Confidence            22      13458999999998755 333322   45778999999988  46667776442100 01122348889999


Q ss_pred             ccCCCccchhhhhc--cCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhHHH-HhhccCCCCCccccCcCeeEE
Q 035836          286 EDFPNLERLSSSIV--DLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLIEE-KCRKDGGQYWNLLTHIPYVSI  361 (380)
Q Consensus       286 ~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~  361 (380)
                      ++ +.++.+|..+.  .+++|+.|++++ +.++.+|.. .-.++|+.|++++|+.+.. .........+..++.+..+.+
T Consensus       736 s~-N~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          736 RF-NKLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CS-SCCCCCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             CC-CCCccchHHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence            88 47778887665  888899999988 566667652 2246888888877542211 011122334555677788888


Q ss_pred             CceeeecCCCCCC
Q 035836          362 DYKWVFDDDPTED  374 (380)
Q Consensus       362 ~~~~~~~~~~~~~  374 (380)
                      .++.+ ..+|...
T Consensus       814 s~N~L-~~Ip~~l  825 (876)
T 4ecn_A          814 GSNDI-RKVDEKL  825 (876)
T ss_dssp             CSSCC-CBCCSCC
T ss_pred             CCCCC-CccCHhh
Confidence            88777 6666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=2.1e-24  Score=211.84  Aligned_cols=341  Identities=12%  Similarity=0.125  Sum_probs=230.4

Q ss_pred             CCCCCCccEEEEecCCCCcc------------------ccC-CC--CCCCCceEeecCCcCccccccccceecCCCCccc
Q 035836            2 CDTNSSLEILEIWVCHSLTY------------------IAG-VQ--LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRY   60 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~   60 (380)
                      ++++++|++|+|+++. ++.                  +|. ..  .+++|++|++++|.-...+|.  .+..++.    
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~----  274 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPE----  274 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSS----
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCC----
Confidence            5678999999999986 454                  666 44  689999999999985566664  4677777    


Q ss_pred             cccccceeEeecCCCccc--ccccCCCCcccccc-ccCCCCCCccEEEEecCCChhhhHh--hccCCCCccEEeecCCCC
Q 035836           61 TSYLLEELRICSCRSLTC--IFSKNELPATLESL-EVGNLPPSLRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCES  135 (380)
Q Consensus        61 ~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~  135 (380)
                          |+.|+++++..++.  +      |..+..+ ....++ +|++|++++|. +..+|.  .++.+++|++|++++|..
T Consensus       275 ----L~~L~Ls~n~~l~~~~l------p~~~~~L~~~~~l~-~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          275 ----MQLINVACNRGISGEQL------KDDWQALADAPVGE-KIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             ----CCEEECTTCTTSCHHHH------HHHHHHHHHSGGGG-TCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             ----CCEEECcCCCCCccccc------hHHHHhhhccccCC-CCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC
Confidence                99999998863442  2      3322221 011235 69999999985 558888  889999999999998655


Q ss_pred             CCcccccccCCCCCcEEEccccccceeccCCCccCCC-CCEEeccCCCCcccccccCCCCC--CccEEEeccCCCCCCCC
Q 035836          136 LKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK-LTRLDIYDCERLEALPKGLHNLT--SLQELTIGKGVELPSLE  212 (380)
Q Consensus       136 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~  212 (380)
                      ...+| .+..+++|++|++++ +.+..+|..+..+++ |++|++++|... .+|..+...+  +|+.|++++|......|
T Consensus       343 ~g~ip-~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          343 EGKLP-AFGSEIKLASLNLAY-NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             EEECC-CCEEEEEESEEECCS-SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             ccchh-hhCCCCCCCEEECCC-CccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence            54788 778889999999988 467788888888888 999999987644 7887776544  89999999886544433


Q ss_pred             CC-C-------CCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccccc-CCCCCCCCcceE
Q 035836          213 ED-G-------LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLG-TALPLPASLTSL  283 (380)
Q Consensus       213 ~~-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L  283 (380)
                      .. .       ..++|+.|++++|... .++...   +..+++|+.|++++  +.+..++....... .....+++|++|
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~l~~L~~L~Ls~--N~l~~i~~~~~~~~~~~~~~l~~L~~L  493 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL---FSTGSPLSSINLMG--NMLTEIPKNSLKDENENFKNTYLLTSI  493 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH---HHTTCCCSEEECCS--SCCSBCCSSSSEETTEECTTGGGCCEE
T ss_pred             hhhcccccccccCCCCCEEECcCCccC-cCCHHH---HccCCCCCEEECCC--CCCCCcCHHHhccccccccccCCccEE
Confidence            21 2       4568999999988654 333322   45678888888887  45556665431100 001122378888


Q ss_pred             ecccCCCccchhhhhc--cCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchhHHH-HhhccCCCCCccccCcCee
Q 035836          284 WIEDFPNLERLSSSIV--DLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPLIEE-KCRKDGGQYWNLLTHIPYV  359 (380)
Q Consensus       284 ~l~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~  359 (380)
                      ++++ +.++.+|..+.  .+++|++|++++ +.++.+|.. .-.++|++|++++|..+.. .........+..++.+..+
T Consensus       494 ~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L  571 (636)
T 4eco_A          494 DLRF-NKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL  571 (636)
T ss_dssp             ECCS-SCCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             ECcC-CcCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence            8887 46667777665  788888888887 456666552 1246778888765431110 0111222334456667777


Q ss_pred             EECceeeecCCCCC
Q 035836          360 SIDYKWVFDDDPTE  373 (380)
Q Consensus       360 ~~~~~~~~~~~~~~  373 (380)
                      .+.++.+ ..+|..
T Consensus       572 ~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          572 QIGSNDI-RKVNEK  584 (636)
T ss_dssp             ECCSSCC-CBCCSC
T ss_pred             ECCCCcC-CccCHh
Confidence            7777776 555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=9.7e-24  Score=192.24  Aligned_cols=282  Identities=20%  Similarity=0.200  Sum_probs=208.6

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS   81 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   81 (380)
                      ++.+++|++|++++| .++.++....+++|++|++++|. +..++   .+..++.        |++|+++++. +..+  
T Consensus        62 ~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~---~~~~l~~--------L~~L~l~~n~-i~~~--  125 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS---ALQNLTN--------LRELYLNEDN-ISDI--  125 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG---GGTTCTT--------CSEEECTTSC-CCCC--
T ss_pred             hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch---HHcCCCc--------CCEEECcCCc-ccCc--
Confidence            356889999999987 56666667788999999999986 77665   3667777        9999998864 3332  


Q ss_pred             cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce
Q 035836           82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV  161 (380)
Q Consensus        82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  161 (380)
                          +      ++..++ +|++|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|+++++ .+.
T Consensus       126 ----~------~~~~l~-~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~  190 (347)
T 4fmz_A          126 ----S------PLANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIE  190 (347)
T ss_dssp             ----G------GGTTCT-TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCC
T ss_pred             ----h------hhccCC-ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccc
Confidence                1      345666 699999999876665544 7889999999999854 444443 677899999999884 566


Q ss_pred             eccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccc
Q 035836          162 SFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRG  241 (380)
Q Consensus       162 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  241 (380)
                      .++. +..+++|+.+++++|... .++. +..+++|+.|++++|.. +..+....+++|++|++++|.... ...     
T Consensus       191 ~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~-~~~-----  260 (347)
T 4fmz_A          191 DISP-LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISD-INA-----  260 (347)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCC-CGG-----
T ss_pred             cccc-ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCC-Chh-----
Confidence            6554 566789999999986443 3333 67788999999998854 444446778899999999986433 322     


Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      +..+++|+.|++++ | .+..++. .       ..+++|++|++++| .+... +..+..+++|++|++++|+ ++.++.
T Consensus       261 ~~~l~~L~~L~l~~-n-~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~  328 (347)
T 4fmz_A          261 VKDLTKLKMLNVGS-N-QISDISV-L-------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP  328 (347)
T ss_dssp             GTTCTTCCEEECCS-S-CCCCCGG-G-------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred             HhcCCCcCEEEccC-C-ccCCChh-h-------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence            67889999999998 3 5555543 2       47789999999996 55544 4578889999999999964 666655


Q ss_pred             CCCcccccEEEecCch
Q 035836          321 KGLPSSLLELWIWDCP  336 (380)
Q Consensus       321 ~~~~~~L~~L~l~~c~  336 (380)
                      ....++|++|++++|+
T Consensus       329 ~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          329 LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGCTTCSEESSSCC-
T ss_pred             hhhhhccceeehhhhc
Confidence            3445789999999876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=2.7e-23  Score=203.40  Aligned_cols=222  Identities=17%  Similarity=0.117  Sum_probs=116.8

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEec
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDI  178 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l  178 (380)
                      +|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|++|+++++.....++.. +..+++|++|++
T Consensus       279 ~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          279 GLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             CCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            46666666653 4455555566666666666654333333344555566666666554332233332 344556666666


Q ss_pred             cCCCCcccc--cccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836          179 YDCERLEAL--PKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       179 ~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      ++|......  +..+..+++|+.|++++|......+ ....+++|+.|++++|.........+   +..+++|+.|++++
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSH  434 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT---TTTCTTCCEEECTT
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh---hhCcccCCEEECCC
Confidence            655433322  3445566666666666654322222 22445666666666655333222211   45566667777666


Q ss_pred             CCCCCccc-ccccccccCCCCCCCCcceEecccCCCccc--hh--hhhccCCCCceEeeecCCCCcccCCCCC--ccccc
Q 035836          256 CDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLER--LS--SSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLL  328 (380)
Q Consensus       256 ~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~  328 (380)
                       | .+... +...       ..+++|++|+++++ .+..  ++  ..+..+++|++|++++| .++.++...+  .++|+
T Consensus       435 -n-~l~~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          435 -S-LLDISSEQLF-------DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             -C-CCBTTCTTTT-------TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred             -C-ccCCcCHHHH-------hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCC
Confidence             3 22222 2222       45667777777763 3332  11  25666777777777774 4555543222  45677


Q ss_pred             EEEecCch
Q 035836          329 ELWIWDCP  336 (380)
Q Consensus       329 ~L~l~~c~  336 (380)
                      +|++++|.
T Consensus       504 ~L~Ls~N~  511 (606)
T 3t6q_A          504 HVDLSHNR  511 (606)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            77777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=4.1e-23  Score=196.23  Aligned_cols=294  Identities=17%  Similarity=0.172  Sum_probs=215.6

Q ss_pred             CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836            6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN   83 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   83 (380)
                      ++++.|+++++ .++.+++  +..+++|++|+++++. +..+... .+..++.        |+.|+++++. +..+    
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~----   95 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPG-AFNNLFN--------LRTLGLRSNR-LKLI----   95 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCSC----
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChh-hhhCCcc--------CCEEECCCCc-CCcc----
Confidence            47889999886 4555543  5568899999999886 7776554 5677777        9999998763 3333    


Q ss_pred             CCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec
Q 035836           84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF  163 (380)
Q Consensus        84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  163 (380)
                        +..    .+..++ +|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|+++++ .+..+
T Consensus        96 --~~~----~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~  167 (477)
T 2id5_A           96 --PLG----VFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSI  167 (477)
T ss_dssp             --CTT----SSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSC
T ss_pred             --Ccc----cccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCccc
Confidence              110    244566 6999999988654455677888999999999985444444556778899999999884 56665


Q ss_pred             cC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccc
Q 035836          164 TE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRG  241 (380)
Q Consensus       164 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~  241 (380)
                      +. .+..+++|+.|++.+|......+..+..+++|+.|++++|.....++.. ....+|++|++++|... ..+...   
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~---  243 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA---  243 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHH---
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHH---
Confidence            54 3456789999999987665555567888999999999988776665533 34558999999998644 333222   


Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      +..+++|+.|++++  +.+..++...      +..+++|++|++++ +.+..+ +..+.++++|++|++++ +.++.++.
T Consensus       244 ~~~l~~L~~L~Ls~--n~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~  313 (477)
T 2id5_A          244 VRHLVYLRFLNLSY--NPISTIEGSM------LHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEE  313 (477)
T ss_dssp             HTTCTTCCEEECCS--SCCCEECTTS------CTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCS-SCCSCCCG
T ss_pred             hcCccccCeeECCC--CcCCccChhh------ccccccCCEEECCC-CccceECHHHhcCcccCCEEECCC-CcCceeCH
Confidence            67889999999998  4566655432      35788999999999 466666 44888999999999999 57888877


Q ss_pred             CCC--cccccEEEecCchh
Q 035836          321 KGL--PSSLLELWIWDCPL  337 (380)
Q Consensus       321 ~~~--~~~L~~L~l~~c~~  337 (380)
                      ..+  .++|++|++++++.
T Consensus       314 ~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          314 SVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             GGBSCGGGCCEEECCSSCE
T ss_pred             hHcCCCcccCEEEccCCCc
Confidence            543  46899999988764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=2e-22  Score=197.29  Aligned_cols=181  Identities=18%  Similarity=0.156  Sum_probs=89.5

Q ss_pred             ccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCc
Q 035836          143 LHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNL  220 (380)
Q Consensus       143 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L  220 (380)
                      +..+++|++|++++ +.+..+|..+..+++|++|++++|......|..+..+++|+.|++++|.....++.  ...+++|
T Consensus       274 ~~~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccC-CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            44456666666666 34556666665666666666666544444444555666666666666543323322  3456667


Q ss_pred             eEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hh-hh
Q 035836          221 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SS-SI  298 (380)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~-~~  298 (380)
                      ++|++++|...........  +..+++|++|++++ | .+..+....      +..+++|++|+++++ .+... +. .+
T Consensus       353 ~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~-n-~l~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~  421 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSY-N-EPLSLKTEA------FKECPQLELLDLAFT-RLKVKDAQSPF  421 (606)
T ss_dssp             CEEECCSSCCCEEEESTTT--TTTCTTCCEEECCS-C-SCEEECTTT------TTTCTTCSEEECTTC-CEECCTTCCTT
T ss_pred             CEEECCCCccccccCcchh--cccCCCCCEEECCC-C-cCCcCCHHH------hcCCccCCeEECCCC-cCCCcccchhh
Confidence            7777766654332210111  55666677777766 2 333222111      134455555555552 33322 11 24


Q ss_pred             ccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCch
Q 035836          299 VDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCP  336 (380)
Q Consensus       299 ~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  336 (380)
                      .++++|++|++++| .++..+...+  .++|++|++++|.
T Consensus       422 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC
Confidence            45555555555553 2333222111  3445555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=8.6e-23  Score=192.85  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836            6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN   83 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   83 (380)
                      ++|++|+++++. ++.+++  +..+++|++|+++++.....++.. .+..++.        |++|+++++.. ....   
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~--------L~~L~Ls~n~l-~~~~---   95 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSS--------LIILKLDYNQF-LQLE---   95 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTT--------CCEEECTTCTT-CEEC---
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcc-ccccccc--------CCEEeCCCCcc-CccC---
Confidence            578999998864 444433  566888999999888733355544 5667777        99999988642 2220   


Q ss_pred             CCCccccccccCCCCCCccEEEEecCCChhhhHhh--ccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEcccc
Q 035836           84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER--LDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWEC  157 (380)
Q Consensus        84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~  157 (380)
                        +.     .+..++ +|++|++++|.....++..  +..+++|++|++++|......|.. +..+++|++|+++++
T Consensus        96 --~~-----~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           96 --TG-----AFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             --TT-----TTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             --hh-----hccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence              11     345566 6999999888644445554  778889999999886544444544 677888999988874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=1.7e-22  Score=191.42  Aligned_cols=304  Identities=19%  Similarity=0.174  Sum_probs=160.7

Q ss_pred             CCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836            4 TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN   83 (380)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   83 (380)
                      .+++|++|++++| .++.+++...+++|++|+++++. +..++.   +..+++        |++|++++|. +..+    
T Consensus        66 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~--------L~~L~L~~n~-l~~~----  127 (466)
T 1o6v_A           66 YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP---LANLTN--------LTGLTLFNNQ-ITDI----  127 (466)
T ss_dssp             GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GTTCTT--------CCEEECCSSC-CCCC----
T ss_pred             hhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh---hcCCCC--------CCEEECCCCC-CCCC----
Confidence            4555666666554 33444444455566666665554 443332   334444        6666665542 2222    


Q ss_pred             CCCccccccccCCCCCCccEEEEecCCChhhhHh--------------------hccCCCCccEEeecCCCCCCcccccc
Q 035836           84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAE--------------------RLDNNTSLETIDISNCESLKILPSGL  143 (380)
Q Consensus        84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~  143 (380)
                        +      ++..++ +|++|++++|. +..++.                    .+..+++|++|++++|. +..++ .+
T Consensus       128 --~------~~~~l~-~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l  195 (466)
T 1o6v_A          128 --D------PLKNLT-NLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VL  195 (466)
T ss_dssp             --G------GGTTCT-TCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred             --h------HHcCCC-CCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hh
Confidence              1      233444 46666665552 222221                    13344444444444422 22222 23


Q ss_pred             cCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEE
Q 035836          144 HNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL  223 (380)
Q Consensus       144 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  223 (380)
                      ..+++|++|+++++ .+..++. +..+++|+.|++++|. +..+ ..+..+++|+.|++++|.. ...+....+++|+.|
T Consensus       196 ~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L  270 (466)
T 1o6v_A          196 AKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTEL  270 (466)
T ss_dssp             GGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEE
T ss_pred             ccCCCCCEEEecCC-ccccccc-ccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCcc-ccchhhhcCCCCCEE
Confidence            44455555555542 2332222 2334555555555543 2222 2344566666666666533 222234556667777


Q ss_pred             EecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCC
Q 035836          224 EIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN  303 (380)
Q Consensus       224 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  303 (380)
                      ++++|.... ...     +..+++|+.|++++  +.+..++. .       ..+++|++|+++++ .+..++. +..+++
T Consensus       271 ~l~~n~l~~-~~~-----~~~l~~L~~L~L~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~  332 (466)
T 1o6v_A          271 KLGANQISN-ISP-----LAGLTALTNLELNE--NQLEDISP-I-------SNLKNLTYLTLYFN-NISDISP-VSSLTK  332 (466)
T ss_dssp             ECCSSCCCC-CGG-----GTTCTTCSEEECCS--SCCSCCGG-G-------GGCTTCSEEECCSS-CCSCCGG-GGGCTT
T ss_pred             ECCCCccCc-ccc-----ccCCCccCeEEcCC--CcccCchh-h-------cCCCCCCEEECcCC-cCCCchh-hccCcc
Confidence            776664332 222     44667777777776  34444443 1       36678888888874 5555553 677888


Q ss_pred             CceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeec
Q 035836          304 LTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD  368 (380)
Q Consensus       304 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (380)
                      |++|++++| .++.++.-.-.++|+.|++++|......       .+..++.+..+.+.++.+..
T Consensus       333 L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          333 LQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLT-------PLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCG-------GGTTCTTCCEEECCCEEEEC
T ss_pred             CCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccc-------hhhcCCCCCEEeccCCcccC
Confidence            888888874 5666644334568888888887542211       13456677888888887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=5.2e-23  Score=201.96  Aligned_cols=305  Identities=15%  Similarity=0.157  Sum_probs=226.0

Q ss_pred             ccC-CCCCCCCceEeecCCcCccc------------------ccccccee--cCCCCccccccccceeEeecCCCccccc
Q 035836           22 IAG-VQLPPSLKQLRISDCDNIRT------------------LTVEEGIQ--SSSSSRRYTSYLLEELRICSCRSLTCIF   80 (380)
Q Consensus        22 ~~~-~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~   80 (380)
                      +|. ...+++|++|+++++. +..                  +|..  +.  .++.        |++|++++|.....+ 
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~--------L~~L~L~~n~l~~~~-  265 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED--LKWDNLKD--------LTDVEVYNCPNLTKL-  265 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTT--------CCEEEEECCTTCSSC-
T ss_pred             CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh--hhhcccCC--------CCEEEecCCcCCccC-
Confidence            443 4558999999999998 776                  6665  44  7777        999999987644333 


Q ss_pred             ccCCCCccccccccCCCCCCccEEEEecCC-Chh-hhHhhccCC------CCccEEeecCCCCCCcccc--cccCCCCCc
Q 035836           81 SKNELPATLESLEVGNLPPSLRSLYVSHCS-KLE-SIAERLDNN------TSLETIDISNCESLKILPS--GLHNLRQLQ  150 (380)
Q Consensus        81 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~  150 (380)
                           |.     .+..++ +|++|++++|. ... .+|..++.+      ++|++|++++|. +..+|.  .+.++++|+
T Consensus       266 -----p~-----~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          266 -----PT-----FLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLG  333 (636)
T ss_dssp             -----CT-----TTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCC
T ss_pred             -----hH-----HHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCC
Confidence                 32     356677 69999999997 444 688887766      999999999954 448888  889999999


Q ss_pred             EEEccccccce-eccCCCccCCCCCEEeccCCCCcccccccCCCCCC-ccEEEeccCCCCCCCCCC-CC--CCCceEEEe
Q 035836          151 KIEIWECENLV-SFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTS-LQELTIGKGVELPSLEED-GL--PTNLHSLEI  225 (380)
Q Consensus       151 ~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~-~~--~~~L~~L~l  225 (380)
                      +|+++++ .+. .+| .+..+++|+.|++++|. +..+|..+..+++ |+.|++++|... .+|.. ..  +++|+.|++
T Consensus       334 ~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L  409 (636)
T 4eco_A          334 MLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF  409 (636)
T ss_dssp             EEECCSC-CCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred             EEeCcCC-cCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence            9999984 566 788 77778899999999865 4488888888998 999999998644 55543 33  348999999


Q ss_pred             cCCCCcchhhhhhccccC-------CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-h
Q 035836          226 DGNMEIWKSTIEWGRGFH-------RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-S  297 (380)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~  297 (380)
                      ++|......+. .   +.       .+++|+.|++++  +.+..++....      ..+++|++|++++ +.++.+|. .
T Consensus       410 s~N~l~~~~p~-~---l~~~~~~~~~~~~L~~L~Ls~--N~l~~lp~~~~------~~l~~L~~L~Ls~-N~l~~i~~~~  476 (636)
T 4eco_A          410 SYNEIGSVDGK-N---FDPLDPTPFKGINVSSINLSN--NQISKFPKELF------STGSPLSSINLMG-NMLTEIPKNS  476 (636)
T ss_dssp             CSSCTTTTTTC-S---SCTTCSSCCCCCCEEEEECCS--SCCCSCCTHHH------HTTCCCSEEECCS-SCCSBCCSSS
T ss_pred             cCCcCCCcchh-h---hcccccccccCCCCCEEECcC--CccCcCCHHHH------ccCCCCCEEECCC-CCCCCcCHHH
Confidence            99875443322 1   33       567999999998  46667776541      3578999999999 57778876 3


Q ss_pred             hccC-------CCCceEeeecCCCCcccCCCC---CcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEE------
Q 035836          298 IVDL-------QNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSI------  361 (380)
Q Consensus       298 ~~~~-------~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~------  361 (380)
                      +...       ++|++|++++ +.++.+|...   -.++|++|++++|..-.      ....+..++.+..+.+      
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~------ip~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYNSFSK------FPTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSSCCSS------CCCGGGGCSSCCEEECCSCBCT
T ss_pred             hccccccccccCCccEEECcC-CcCCccChhhhhccCCCcCEEECCCCCCCC------cChhhhcCCCCCEEECCCCccc
Confidence            3332       3999999999 5677888742   45799999999975432      2223445778888888      


Q ss_pred             CceeeecCCCCCC
Q 035836          362 DYKWVFDDDPTED  374 (380)
Q Consensus       362 ~~~~~~~~~~~~~  374 (380)
                      .++.+...+|...
T Consensus       550 s~N~l~~~~p~~l  562 (636)
T 4eco_A          550 QGNRTLREWPEGI  562 (636)
T ss_dssp             TCCBCCCCCCTTG
T ss_pred             ccCcccccChHHH
Confidence            3455666666544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=6.6e-23  Score=199.15  Aligned_cols=115  Identities=23%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCcc--chhhhhccCCCCceEeeecCCCCcccC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLE--RLSSSIVDLQNLTILQLIDCPKLKYFP  319 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~  319 (380)
                      +..+++|+.|++++ |......+...       ..+++|++|++++| .+.  .+|..+..+++|++|++++| .++.++
T Consensus       417 ~~~l~~L~~L~l~~-n~l~~~~~~~~-------~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~  486 (570)
T 2z63_A          417 FLSLRNLIYLDISH-THTRVAFNGIF-------NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS  486 (570)
T ss_dssp             TTTCTTCCEEECTT-SCCEECCTTTT-------TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred             hhcCCCCCEEeCcC-Ccccccchhhh-------hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCC
Confidence            45566666666665 32222222222       45666777777764 333  35556666777777777763 455543


Q ss_pred             CCCC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeecCCC
Q 035836          320 EKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDP  371 (380)
Q Consensus       320 ~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (380)
                      ...+  .++|++|++++|...     ......+..++.+..+.+.++++..++|
T Consensus       487 ~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          487 PTAFNSLSSLQVLNMASNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hhhhhcccCCCEEeCCCCcCC-----CCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            3222  356777777765321     1222234455666677777666655544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=3.1e-22  Score=185.26  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=189.6

Q ss_pred             CCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccccc
Q 035836            5 NSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSK   82 (380)
Q Consensus         5 ~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   82 (380)
                      +++++.|++.++ .++.+|.  +..+++|++|+++++. +..++.. .+..++.        |++|+++++. +..+.  
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~~--  109 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHT--------IQKLYMGFNA-IRYLP--  109 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCCCC--
T ss_pred             cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChh-hccCCCC--------cCEEECCCCC-CCcCC--
Confidence            567888888775 4566665  3457888888888876 6666654 5666666        8888888764 32220  


Q ss_pred             CCCCccccccccCCCCCCccEEEEecCCChhhhHhh-ccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce
Q 035836           83 NELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV  161 (380)
Q Consensus        83 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  161 (380)
                         +.     .+..++ +|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|++|+++++ .+.
T Consensus       110 ---~~-----~~~~l~-~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~  178 (390)
T 3o6n_A          110 ---PH-----VFQNVP-LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLT  178 (390)
T ss_dssp             ---TT-----TTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCS
T ss_pred             ---HH-----HhcCCC-CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCC
Confidence               11     244556 58888888774 5555554 467788888888875443333444667788888888773 444


Q ss_pred             eccCCCccCCCCCEEeccCCCC------------------cccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEE
Q 035836          162 SFTEGGLPCAKLTRLDIYDCER------------------LEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSL  223 (380)
Q Consensus       162 ~l~~~~~~~~~L~~L~l~~~~~------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  223 (380)
                      .++  ...+++|+.+++++|..                  +..++..  ..++|+.|++++|.. +..+....+++|++|
T Consensus       179 ~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L  253 (390)
T 3o6n_A          179 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNL-TDTAWLLNYPGLVEV  253 (390)
T ss_dssp             BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCC-CCCGGGGGCTTCSEE
T ss_pred             ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCC-cccHHHcCCCCccEE
Confidence            432  22234555555544321                  2222221  245788888887743 334445667888888


Q ss_pred             EecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCC
Q 035836          224 EIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN  303 (380)
Q Consensus       224 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  303 (380)
                      ++++|......+ ..   +..+++|+.|++++  +.+..++...       ..+++|++|++++ +.+..+|..+..+++
T Consensus       254 ~Ls~n~l~~~~~-~~---~~~l~~L~~L~L~~--n~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~  319 (390)
T 3o6n_A          254 DLSYNELEKIMY-HP---FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDR  319 (390)
T ss_dssp             ECCSSCCCEEES-GG---GTTCSSCCEEECCS--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTT
T ss_pred             ECCCCcCCCcCh-hH---ccccccCCEEECCC--CcCcccCccc-------CCCCCCCEEECCC-CcceecCccccccCc
Confidence            888876443322 22   66788899999987  4666666544       4678899999998 477888877888899


Q ss_pred             CceEeeecCCCCcccCCCCCcccccEEEecCchhHHH
Q 035836          304 LTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE  340 (380)
Q Consensus       304 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~  340 (380)
                      |++|++++ +.++.++. ...++|++|++++|+.-..
T Consensus       320 L~~L~L~~-N~i~~~~~-~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          320 LENLYLDH-NSIVTLKL-STHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSEEECCS-SCCCCCCC-CTTCCCSEEECCSSCEEHH
T ss_pred             CCEEECCC-CccceeCc-hhhccCCEEEcCCCCccch
Confidence            99999998 55777764 3356899999998875554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=5e-22  Score=187.64  Aligned_cols=318  Identities=16%  Similarity=0.130  Sum_probs=203.2

Q ss_pred             EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836           10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL   89 (380)
Q Consensus        10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~   89 (380)
                      .++..++ .++.+|.  ..++|++|+++++. +..++.. .+..+++        |++|+++++.....+          
T Consensus        14 ~~~c~~~-~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~~~~~i----------   70 (455)
T 3v47_A           14 NAICINR-GLHQVPE--LPAHVNYVDLSLNS-IAELNET-SFSRLQD--------LQFLKVEQQTPGLVI----------   70 (455)
T ss_dssp             EEECCSS-CCSSCCC--CCTTCCEEECCSSC-CCEECTT-TTSSCTT--------CCEEECCCCSTTCEE----------
T ss_pred             ccCcCCC-CcccCCC--CCCccCEEEecCCc-cCcCChh-HhccCcc--------ccEEECcCCcccceE----------
Confidence            3444443 5677776  56899999999997 7777555 5778888        999999987533222          


Q ss_pred             cccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc--ccCCCCCcEEEccccccceec-cCC
Q 035836           90 ESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG--LHNLRQLQKIEIWECENLVSF-TEG  166 (380)
Q Consensus        90 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l-~~~  166 (380)
                      +.-.+..++ +|++|++++|......|..+..+++|++|++++|......+..  +..+++|++|+++++ .+..+ +..
T Consensus        71 ~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~  148 (455)
T 3v47_A           71 RNNTFRGLS-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS  148 (455)
T ss_dssp             CTTTTTTCT-TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCG
T ss_pred             Ccccccccc-cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCccc
Confidence            111356677 6999999998754455888999999999999997655444444  778999999999985 55655 443


Q ss_pred             -CccCCCCCEEeccCCCCcccccccCCC----------------------------------CCCccEEEeccCCCCCCC
Q 035836          167 -GLPCAKLTRLDIYDCERLEALPKGLHN----------------------------------LTSLQELTIGKGVELPSL  211 (380)
Q Consensus       167 -~~~~~~L~~L~l~~~~~~~~~~~~l~~----------------------------------~~~L~~L~l~~~~~~~~~  211 (380)
                       +..+++|++|++++|......+..+..                                  +++|+.|++++|......
T Consensus       149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence             567899999999987654444433322                                  245666666655321100


Q ss_pred             C---------------------------------C-----C--CCCCCceEEEecCCCCcchhhhhhccccCCCCcccee
Q 035836          212 E---------------------------------E-----D--GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL  251 (380)
Q Consensus       212 ~---------------------------------~-----~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L  251 (380)
                      +                                 .     .  ...++|+.|++++|......+ .+   +..+++|++|
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~---~~~l~~L~~L  304 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SV---FSHFTDLEQL  304 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TT---TTTCTTCCEE
T ss_pred             hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch-hh---cccCCCCCEE
Confidence            0                                 0     0  012356666666554332211 11   5567777777


Q ss_pred             eeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCCCCC--ccccc
Q 035836          252 AISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLL  328 (380)
Q Consensus       252 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~  328 (380)
                      ++++  +.+..++...      +..+++|++|+++++ .++.+ +..+.++++|++|++++ +.++.++...+  .++|+
T Consensus       305 ~Ls~--n~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          305 TLAQ--NEINKIDDNA------FWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY-NHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             ECTT--SCCCEECTTT------TTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS-SCCCEECTTTTTTCTTCC
T ss_pred             ECCC--CcccccChhH------hcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC-CcccccChhhcccccccc
Confidence            7776  3444443211      246677888888874 55555 34677778888888877 45666544333  46788


Q ss_pred             EEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeecCCC
Q 035836          329 ELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDP  371 (380)
Q Consensus       329 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (380)
                      +|++++|..-     ......+..++.+..+.+.++++..++|
T Consensus       375 ~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          375 ELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCccc-----cCCHhHhccCCcccEEEccCCCcccCCC
Confidence            8888776422     1222334556677777777777766655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=5e-23  Score=199.15  Aligned_cols=62  Identities=23%  Similarity=0.127  Sum_probs=31.4

Q ss_pred             cCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeee
Q 035836          300 DLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVF  367 (380)
Q Consensus       300 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (380)
                      .+++|++|++++ +.++.+|.....++|+.|++++|...     ....+.+..++.+..+.+.++++.
T Consensus       449 ~l~~L~~L~Ls~-N~l~~ip~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          449 FLPRLQELYISR-NKLKTLPDASLFPVLLVMKISRNQLK-----SVPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             CCTTCCEEECCS-SCCSSCCCGGGCTTCCEEECCSSCCC-----CCCTTGGGGCTTCCEEECCSSCBC
T ss_pred             cCChhcEEECCC-CccCcCCCcccCccCCEEecCCCccC-----CcCHHHHhcCcccCEEEecCCCcc
Confidence            455566666655 34555555444456666666654321     112222344555666666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=4.7e-22  Score=191.03  Aligned_cols=154  Identities=18%  Similarity=0.214  Sum_probs=96.6

Q ss_pred             cCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCC--CCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836          169 PCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELP--SLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF  245 (380)
Q Consensus       169 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  245 (380)
                      .+++|++|++++|.....+|..+..+++|+.|++++|....  .++ ....+++|++|++++|......+...   +..+
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---~~~l  398 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---CSWT  398 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS---CCCC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch---hccC
Confidence            35566666666655544455566666677777776664322  111 12456667777777665443233221   4556


Q ss_pred             CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--
Q 035836          246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--  323 (380)
Q Consensus       246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--  323 (380)
                      ++|+.|++++ |.....++..         .+++|++|++++ +.++.+|..+..+++|++|++++ +.++.+|...+  
T Consensus       399 ~~L~~L~Ls~-N~l~~~~~~~---------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~  466 (520)
T 2z7x_B          399 KSLLSLNMSS-NILTDTIFRC---------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDR  466 (520)
T ss_dssp             TTCCEEECCS-SCCCGGGGGS---------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             ccCCEEECcC-CCCCcchhhh---------hcccCCEEECCC-CcccccchhhhcCCCCCEEECCC-CcCCccCHHHhcc
Confidence            6777777776 3322333321         226888888888 47778888777889999999988 56778877533  


Q ss_pred             cccccEEEecCchh
Q 035836          324 PSSLLELWIWDCPL  337 (380)
Q Consensus       324 ~~~L~~L~l~~c~~  337 (380)
                      .++|++|++++|+.
T Consensus       467 l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          467 LTSLQKIWLHTNPW  480 (520)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             CCcccEEECcCCCC
Confidence            46888999887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=6.1e-22  Score=188.17  Aligned_cols=273  Identities=18%  Similarity=0.187  Sum_probs=210.4

Q ss_pred             CCCCCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI   79 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   79 (380)
                      |..+++|++|+|++| .+..+.+  +..+++|++|+++++. +..++.. .+..++.        |+.|+++++.. ..+
T Consensus        52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~n~i-~~~  119 (477)
T 2id5_A           52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLG-VFTGLSN--------LTKLDISENKI-VIL  119 (477)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTT-SSTTCTT--------CCEEECTTSCC-CEE
T ss_pred             ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcc-cccCCCC--------CCEEECCCCcc-ccC
Confidence            678999999999997 5555533  5668999999999997 8888876 6777888        99999998753 222


Q ss_pred             cccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccc
Q 035836           80 FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECE  158 (380)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  158 (380)
                               .+. .+..++ +|++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|+.|++.++ 
T Consensus       120 ---------~~~-~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n-  186 (477)
T 2id5_A          120 ---------LDY-MFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL-  186 (477)
T ss_dssp             ---------CTT-TTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC-
T ss_pred             ---------Chh-Hccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC-
Confidence                     111 355667 6999999998644455668889999999999995 455555 45788999999999984 


Q ss_pred             cceeccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCcchhh
Q 035836          159 NLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEIWKST  235 (380)
Q Consensus       159 ~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~  235 (380)
                      .+..++. .+..+++|+.|++++|.....++.......+|+.|++++|. ++.++  ....+++|+.|++++|... ...
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~  264 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS-TIE  264 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCC-EEC
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCC-ccC
Confidence            5555554 56678899999999998888888766666799999999984 44454  2367899999999998744 333


Q ss_pred             hhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836          236 IEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       236 ~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  313 (380)
                      ...   +..+++|+.|++++  +.+..+....      +..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus       265 ~~~---~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          265 GSM---LHELLRLQEIQLVG--GQLAVVEPYA------FRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             TTS---CTTCTTCCEEECCS--SCCSEECTTT------BTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             hhh---ccccccCCEEECCC--CccceECHHH------hcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence            222   77899999999998  4555553322      35789999999999 57888876 67889999999999854

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=2.2e-21  Score=183.75  Aligned_cols=292  Identities=18%  Similarity=0.201  Sum_probs=208.9

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS   81 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   81 (380)
                      ++.+++|++|++++| .+..+++...+++|++|++++|. +..++.   +..++.        |+.|+++++. +..+..
T Consensus        86 ~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~--------L~~L~l~~n~-l~~~~~  151 (466)
T 1o6v_A           86 LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ-ITDIDP---LKNLTN--------LNRLELSSNT-ISDISA  151 (466)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GTTCTT--------CSEEEEEEEE-ECCCGG
T ss_pred             hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCC-CCCChH---HcCCCC--------CCEEECCCCc-cCCChh
Confidence            456788888888886 44555556778888888888886 666552   455666        8888877653 222100


Q ss_pred             ------------cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCC
Q 035836           82 ------------KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQL  149 (380)
Q Consensus        82 ------------~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  149 (380)
                                  .+... .+.  ++..++ +|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|
T Consensus       152 ~~~l~~L~~L~l~~~~~-~~~--~~~~l~-~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L  223 (466)
T 1o6v_A          152 LSGLTSLQQLSFGNQVT-DLK--PLANLT-TLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTNL  223 (466)
T ss_dssp             GTTCTTCSEEEEEESCC-CCG--GGTTCT-TCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTC
T ss_pred             hccCCcccEeecCCccc-Cch--hhccCC-CCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCCC
Confidence                        00000 011  355667 69999999985 55443 47789999999999964 444433 6679999


Q ss_pred             cEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCC
Q 035836          150 QKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM  229 (380)
Q Consensus       150 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  229 (380)
                      +.|+++++ .+..++ .+..+++|+.|++++|.... ++. +..+++|+.|++++|.. ...+....+++|+.|++++|.
T Consensus       224 ~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          224 DELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQ  298 (466)
T ss_dssp             CEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC
T ss_pred             CEEECCCC-Ccccch-hhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCc
Confidence            99999985 565553 45668899999999975443 333 77899999999999854 444446788999999999986


Q ss_pred             CcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEee
Q 035836          230 EIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQL  309 (380)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  309 (380)
                      ... ...     +..+++|+.|++++ | .+..++. .       ..+++|++|+++++ .+..++ .+.++++|+.|++
T Consensus       299 l~~-~~~-----~~~l~~L~~L~L~~-n-~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l  360 (466)
T 1o6v_A          299 LED-ISP-----ISNLKNLTYLTLYF-N-NISDISP-V-------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSA  360 (466)
T ss_dssp             CSC-CGG-----GGGCTTCSEEECCS-S-CCSCCGG-G-------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred             ccC-chh-----hcCCCCCCEEECcC-C-cCCCchh-h-------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeC
Confidence            443 332     66789999999998 4 4555443 2       37789999999995 777775 7889999999999


Q ss_pred             ecCCCCcccCCCCCcccccEEEecCchhHH
Q 035836          310 IDCPKLKYFPEKGLPSSLLELWIWDCPLIE  339 (380)
Q Consensus       310 ~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~  339 (380)
                      ++| .++.++.....++|+.|++++|+...
T Consensus       361 ~~n-~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          361 GHN-QISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSS-CCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             CCC-ccCccchhhcCCCCCEEeccCCcccC
Confidence            995 56665444446789999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=4.3e-22  Score=199.58  Aligned_cols=302  Identities=16%  Similarity=0.185  Sum_probs=169.7

Q ss_pred             CCCCCccEEEEecCCCCccccC-CCCCCCCceEeecCCcCcc--ccccccceecCCCCccccccccceeEeecCCCcccc
Q 035836            3 DTNSSLEILEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIR--TLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI   79 (380)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   79 (380)
                      ..+++|++|+|++|.....+|. +..+++|+.|+++++..+.  .+|..  +..+.. .-..+++|+.|+++++. +..+
T Consensus       488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~--i~~L~~-~~~~l~~L~~L~Ls~N~-L~~i  563 (876)
T 4ecn_A          488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD--WTRLAD-DEDTGPKIQIFYMGYNN-LEEF  563 (876)
T ss_dssp             GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH--HHHHHH-CTTTTTTCCEEECCSSC-CCBC
T ss_pred             ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH--HHhhhh-cccccCCccEEEeeCCc-CCcc
Confidence            4889999999999877777775 5668999999999986444  35543  232220 00012228899988864 2233


Q ss_pred             cccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCC-CcEEEccccc
Q 035836           80 FSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQ-LQKIEIWECE  158 (380)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~  158 (380)
                            |..   -.+..++ +|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++ |+.|+++++ 
T Consensus       564 ------p~~---~~l~~L~-~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-  629 (876)
T 4ecn_A          564 ------PAS---ASLQKMV-KLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-  629 (876)
T ss_dssp             ------CCH---HHHTTCT-TCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-
T ss_pred             ------CCh---hhhhcCC-CCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-
Confidence                  220   0134455 57777777775 44666 67777777777777743 4466766666776 777777763 


Q ss_pred             cceeccCCCccCC--CCCEEeccCCCCcc----------------------------cccccC-CCCCCccEEEeccCCC
Q 035836          159 NLVSFTEGGLPCA--KLTRLDIYDCERLE----------------------------ALPKGL-HNLTSLQELTIGKGVE  207 (380)
Q Consensus       159 ~l~~l~~~~~~~~--~L~~L~l~~~~~~~----------------------------~~~~~l-~~~~~L~~L~l~~~~~  207 (380)
                      .+..+|..+..++  +|+.|++++|....                            .+|..+ ..+++|+.|++++|..
T Consensus       630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence            4555555443322  36666666554332                            222222 2445555555555532


Q ss_pred             CCCCCCC-CC--------CCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCC
Q 035836          208 LPSLEED-GL--------PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPA  278 (380)
Q Consensus       208 ~~~~~~~-~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~  278 (380)
                       ..+|.. ..        +++|+.|++++|... .++..+.  ...+++|+.|++++  +.+..++...       ..++
T Consensus       710 -~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~--~~~l~~L~~L~Ls~--N~L~~lp~~l-------~~L~  776 (876)
T 4ecn_A          710 -TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR--ATTLPYLSNMDVSY--NCFSSFPTQP-------LNSS  776 (876)
T ss_dssp             -SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS--TTTCTTCCEEECCS--SCCSSCCCGG-------GGCT
T ss_pred             -CccChHHhccccccccccCCccEEECCCCCCc-cchHHhh--hccCCCcCEEEeCC--CCCCccchhh-------hcCC
Confidence             233221 11        125666666665433 2222110  12556666666665  3444455444       3556


Q ss_pred             CcceEeccc------CCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchh
Q 035836          279 SLTSLWIED------FPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPL  337 (380)
Q Consensus       279 ~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~  337 (380)
                      +|+.|++++      +.....+|..+.++++|++|++++| .++.+|.. +.++|+.|++++|+.
T Consensus       777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred             CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence            666666654      2223445556666667777777663 44666654 335677777776653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=6.8e-22  Score=196.03  Aligned_cols=230  Identities=16%  Similarity=0.084  Sum_probs=166.9

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceecc-CCCccCCCCCEEe
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFT-EGGLPCAKLTRLD  177 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~  177 (380)
                      +|+.|++++|......|..+..+++|++|++++|.....+| ..+..+++|+.|+++++. +..++ ..+..+++|+.|+
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEE
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccch
Confidence            47777777775444556678888899999998865545555 457778899999998854 44443 3555688999999


Q ss_pred             ccCCCC--cccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhh----ccccCCCCccce
Q 035836          178 IYDCER--LEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEW----GRGFHRFSSLRR  250 (380)
Q Consensus       178 l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~L~~  250 (380)
                      +.+|..  ...+|..+..+++|+.|++++|......+. ...+++|+.|++++|..........    ...+.++++|+.
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            988754  246677888899999999998854333222 4678899999999986433211100    001677899999


Q ss_pred             eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC---ccc
Q 035836          251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL---PSS  326 (380)
Q Consensus       251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~  326 (380)
                      |++++  +.+..++...      +..+++|++|++++ +.++.+|. .+.++++|++|++++ +.++.++...+   .++
T Consensus       541 L~L~~--N~l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~  610 (680)
T 1ziw_A          541 LNLES--NGFDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRN  610 (680)
T ss_dssp             EECCS--SCCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTT
T ss_pred             EECCC--CCCCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccc
Confidence            99998  4666776532      35788999999988 68888877 578899999999998 57887766432   468


Q ss_pred             ccEEEecCchhHHH
Q 035836          327 LLELWIWDCPLIEE  340 (380)
Q Consensus       327 L~~L~l~~c~~l~~  340 (380)
                      |+.+++++||..++
T Consensus       611 L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          611 LTELDMRFNPFDCT  624 (680)
T ss_dssp             CSEEECTTCCCCBC
T ss_pred             cCEEEccCCCcccC
Confidence            99999998887664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=8.4e-22  Score=192.80  Aligned_cols=290  Identities=16%  Similarity=0.126  Sum_probs=203.3

Q ss_pred             CccEEEEecCCCCcc-ccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836            7 SLEILEIWVCHSLTY-IAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL   85 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~   85 (380)
                      +++.+.+.++..+.. ++....+++|+.|++.++. +..++   .+..++.        |++|++++|.. ..+      
T Consensus       262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~---~l~~~~~--------L~~L~l~~n~l-~~l------  322 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE---DVPKHFK--------WQSLSIIRCQL-KQF------  322 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC---CCCTTCC--------CSEEEEESCCC-SSC------
T ss_pred             cHhheeccccccccccccccccCCCCCEEEecCcc-chhhh---hcccccc--------CCEEEcccccC-ccc------
Confidence            356666644444333 4445567889999998887 66666   3566666        89999988754 333      


Q ss_pred             CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEccccccceec
Q 035836           86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLVSF  163 (380)
Q Consensus        86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~l  163 (380)
                      |      .+ .++ +|++|++++|..+..+  .+..+++|++|++++|.....  ++..+..+++|++|+++++ .+..+
T Consensus       323 p------~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~  391 (606)
T 3vq2_A          323 P------TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM  391 (606)
T ss_dssp             C------CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEE
T ss_pred             c------cC-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccc
Confidence            2      22 556 6999999888555444  566788999999988543322  2566778889999999884 57777


Q ss_pred             cCCCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccc
Q 035836          164 TEGGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRG  241 (380)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~  241 (380)
                      +..+..+++|+.|++++|......+ ..+..+++|+.|++++|......+. ...+++|++|++++|.......+..   
T Consensus       392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---  468 (606)
T 3vq2_A          392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV---  468 (606)
T ss_dssp             CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---
T ss_pred             hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh---
Confidence            7777778889999998876555555 4677888999999998865444443 4677889999998886544222222   


Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-hhhhccCCCCceEeeecCCCCcccCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      +..+++|+.|++++ | .+..++...      +..+++|++|+++++ .+..+ |..+.++++|++|++++ +.++.+|.
T Consensus       469 ~~~l~~L~~L~Ls~-n-~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~  538 (606)
T 3vq2_A          469 FANTTNLTFLDLSK-C-QLEQISWGV------FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSF-NRIETSKG  538 (606)
T ss_dssp             CTTCTTCCEEECTT-S-CCCEECTTT------TTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTT-SCCCCEES
T ss_pred             hccCCCCCEEECCC-C-cCCccChhh------hcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCC-CcCcccCH
Confidence            67889999999988 4 444443321      257788999999985 55555 66888899999999998 45778777


Q ss_pred             C--CCcccccEEEecCchhHH
Q 035836          321 K--GLPSSLLELWIWDCPLIE  339 (380)
Q Consensus       321 ~--~~~~~L~~L~l~~c~~l~  339 (380)
                      .  .++.+|++|++++|+..+
T Consensus       539 ~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CGGGSCTTCCEEECCSCCCCC
T ss_pred             hHhhhcccCcEEEccCCCccc
Confidence            4  233469999998876443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=1.3e-21  Score=191.41  Aligned_cols=267  Identities=19%  Similarity=0.184  Sum_probs=199.8

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS   81 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   81 (380)
                      +..+++|+.|++.++. +..++....+++|++|++++|. +..++ .  + .++.        |+.|+++++..+...  
T Consensus       281 ~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~-l~~lp-~--~-~l~~--------L~~L~l~~n~~~~~~--  344 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQ-LKQFP-T--L-DLPF--------LKSLTLTMNKGSISF--  344 (606)
T ss_dssp             CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCC-CSSCC-C--C-CCSS--------CCEEEEESCSSCEEC--
T ss_pred             cccCCCCCEEEecCcc-chhhhhccccccCCEEEccccc-Ccccc-c--C-CCCc--------cceeeccCCcCccch--
Confidence            3467889999998874 4667766778899999999998 57666 3  3 6666        999999988655544  


Q ss_pred             cCCCCccccccccCCCCCCccEEEEecCCChhh---hHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccc
Q 035836           82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLES---IAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECE  158 (380)
Q Consensus        82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  158 (380)
                                 .+..++ +|++|++++|. +..   ++..+..+++|++|++++| .+..+|..+..+++|+.|+++++ 
T Consensus       345 -----------~~~~l~-~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n-  409 (606)
T 3vq2_A          345 -----------KKVALP-SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHS-  409 (606)
T ss_dssp             -----------CCCCCT-TCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTS-
T ss_pred             -----------hhccCC-CCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCC-
Confidence                       566777 59999999885 433   3677788899999999884 46667777888899999999884 


Q ss_pred             cceeccC--CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCC-CC-CCCCCCCceEEEecCCCCcchh
Q 035836          159 NLVSFTE--GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS-LE-EDGLPTNLHSLEIDGNMEIWKS  234 (380)
Q Consensus       159 ~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~  234 (380)
                      .+...+.  .+..+++|+.|++++|......|..+..+++|+.|++++|..... .+ ....+++|+.|++++|..... 
T Consensus       410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-  488 (606)
T 3vq2_A          410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-  488 (606)
T ss_dssp             EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-
T ss_pred             ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-
Confidence            4554433  556688999999998877777777888889999999998855432 33 346788999999999864433 


Q ss_pred             hhhhccccCCCCccceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCC-CCceEeeecC
Q 035836          235 TIEWGRGFHRFSSLRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQ-NLTILQLIDC  312 (380)
Q Consensus       235 ~~~~~~~~~~~~~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c  312 (380)
                      .+..   +..+++|+.|++++ | .+..+ +...       ..+++|++|++++ +.++.+|..+..++ +|++|+++++
T Consensus       489 ~~~~---~~~l~~L~~L~Ls~-N-~l~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          489 SWGV---FDTLHRLQLLNMSH-N-NLLFLDSSHY-------NQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CTTT---TTTCTTCCEEECCS-S-CCSCEEGGGT-------TTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSC
T ss_pred             Chhh---hcccccCCEEECCC-C-cCCCcCHHHc-------cCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCC
Confidence            2222   67888999999998 4 44444 4444       5778899999998 46888888788887 5999999885


Q ss_pred             C
Q 035836          313 P  313 (380)
Q Consensus       313 ~  313 (380)
                      +
T Consensus       556 ~  556 (606)
T 3vq2_A          556 S  556 (606)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=9.5e-22  Score=185.17  Aligned_cols=273  Identities=18%  Similarity=0.180  Sum_probs=143.2

Q ss_pred             CCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccC
Q 035836            4 TNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKN   83 (380)
Q Consensus         4 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   83 (380)
                      .+++|++|+++++ .++.++....+++|++|+++++. +..++    +..++.        |+.|+++++. ++.+    
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~--------L~~L~Ls~N~-l~~~----  100 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD----LSQNTN--------LTYLACDSNK-LTNL----  100 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC----CTTCTT--------CSEEECCSSC-CSCC----
T ss_pred             HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc----cccCCC--------CCEEECcCCC-Ccee----
Confidence            4678888888886 45556666667888888888886 66654    345555        8888887753 3333    


Q ss_pred             CCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec
Q 035836           84 ELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF  163 (380)
Q Consensus        84 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  163 (380)
                               ++..++ +|++|++++|. +..++  +..+++|++|++++| .+..++  +..+++|++|+++++..+..+
T Consensus       101 ---------~~~~l~-~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          101 ---------DVTPLT-KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             ---------CCTTCT-TCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC
T ss_pred             ---------ecCCCC-cCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc
Confidence                     344555 47777776663 33343  556666666666663 333332  445566666666654444433


Q ss_pred             cCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836          164 TEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH  243 (380)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  243 (380)
                        .+..+++|+.|++++|. ++.+|  +..+++|+.|++++|.. +.+ ....+++|+.|++++|.... ++      +.
T Consensus       165 --~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l-~~~-~l~~l~~L~~L~Ls~N~l~~-ip------~~  230 (457)
T 3bz5_A          165 --DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNI-TKL-DLNQNIQLTFLDCSSNKLTE-ID------VT  230 (457)
T ss_dssp             --CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCC-SCC-CCTTCTTCSEEECCSSCCSC-CC------CT
T ss_pred             --ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcC-Cee-ccccCCCCCEEECcCCcccc-cC------cc
Confidence              23344555555555542 22232  34444555555544422 111 12334444444444443221 11      22


Q ss_pred             CCCccceeeeecC------------------------------CCCCcccccccccccCCCCCCCCcceEecccCCCccc
Q 035836          244 RFSSLRRLAISGC------------------------------DDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER  293 (380)
Q Consensus       244 ~~~~L~~L~l~~~------------------------------~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  293 (380)
                      .+++|+.|+++++                              |.....++.         ..+++|+.|++++|..+..
T Consensus       231 ~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~---------~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA---------EGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC---------TTCTTCCCCCCTTCTTCCE
T ss_pred             ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc---------cccccCCEEECCCCcccce
Confidence            3344444444430                              222222221         2446677777776654444


Q ss_pred             hhh--------hhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCch
Q 035836          294 LSS--------SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCP  336 (380)
Q Consensus       294 l~~--------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~  336 (380)
                      +|.        .+.++++|++|++++ +.++.++- .-.++|+.|+++++.
T Consensus       302 l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~l-~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          302 LDCQAAGITELDLSQNPKLVYLYLNN-TELTELDV-SHNTKLKSLSCVNAH  350 (457)
T ss_dssp             EECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCCC-TTCTTCSEEECCSSC
T ss_pred             eccCCCcceEechhhcccCCEEECCC-Cccccccc-ccCCcCcEEECCCCC
Confidence            432        234445666666665 44555532 234567777776643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=7.9e-21  Score=184.16  Aligned_cols=152  Identities=19%  Similarity=0.179  Sum_probs=92.8

Q ss_pred             CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC----CCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836          170 CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE----EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF  245 (380)
Q Consensus       170 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  245 (380)
                      +++|++|++++|.....+|..+..+++|+.|++++|.. +.++    ....+++|+.|++++|......+...   +..+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~~l  427 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---CAWA  427 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC---CCCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhh---hcCc
Confidence            45566666666554444555566666666666666532 2221    23455666666666665433222222   4556


Q ss_pred             CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--
Q 035836          246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--  323 (380)
Q Consensus       246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--  323 (380)
                      ++|+.|++++ |.....++..         .+++|++|++++ +.++.+|..+..+++|++|++++ +.++.+|...+  
T Consensus       428 ~~L~~L~l~~-n~l~~~~~~~---------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~  495 (562)
T 3a79_B          428 ESILVLNLSS-NMLTGSVFRC---------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDR  495 (562)
T ss_dssp             TTCCEEECCS-SCCCGGGGSS---------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTT
T ss_pred             ccCCEEECCC-CCCCcchhhh---------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhc
Confidence            6667777766 3322222221         226888888888 47888888666888999999988 67888877422  


Q ss_pred             cccccEEEecCchh
Q 035836          324 PSSLLELWIWDCPL  337 (380)
Q Consensus       324 ~~~L~~L~l~~c~~  337 (380)
                      .++|+.|++++++.
T Consensus       496 l~~L~~L~l~~N~~  509 (562)
T 3a79_B          496 LTSLQYIWLHDNPW  509 (562)
T ss_dssp             CTTCCCEECCSCCB
T ss_pred             CCCCCEEEecCCCc
Confidence            56888888887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=2.5e-21  Score=188.83  Aligned_cols=289  Identities=15%  Similarity=0.127  Sum_probs=178.4

Q ss_pred             CCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccccccc
Q 035836            5 NSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSK   82 (380)
Q Consensus         5 ~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   82 (380)
                      +++++.+++.++ .+..+|.  +..+++|+.|+++++. +..++.. .+..++.        |+.|+++++. +..+   
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~---  114 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHT--------IQKLYMGFNA-IRYL---  114 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCCC---
T ss_pred             CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChH-HhcCCCC--------CCEEECCCCc-CCCC---
Confidence            345666666664 3444544  2345666666666665 5555543 4455555        6666666653 2222   


Q ss_pred             CCCCccccccccCCCCCCccEEEEecCCChhhhHhh-ccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce
Q 035836           83 NELPATLESLEVGNLPPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV  161 (380)
Q Consensus        83 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  161 (380)
                         +   +. .+..++ +|++|++++|. +..+|.. +..+++|++|++++|......|..+..+++|++|+++++ .+.
T Consensus       115 ---~---~~-~~~~l~-~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~  184 (597)
T 3oja_B          115 ---P---PH-VFQNVP-LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLT  184 (597)
T ss_dssp             ---C---TT-TTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCS
T ss_pred             ---C---HH-HHcCCC-CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCC
Confidence               0   00 234445 46666666663 3344433 456666666666664333333334556666666666653 333


Q ss_pred             eccCCCccCC-------------------CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceE
Q 035836          162 SFTEGGLPCA-------------------KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHS  222 (380)
Q Consensus       162 ~l~~~~~~~~-------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  222 (380)
                      .++  ...++                   +|+.|++++|. +..++..+  .++|+.|++++|.. +..+....+++|+.
T Consensus       185 ~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~L~~n~l-~~~~~l~~l~~L~~  258 (597)
T 3oja_B          185 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNL-TDTAWLLNYPGLVE  258 (597)
T ss_dssp             BCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCEEECSC--CSCCCEEECCSSCC-CCCGGGGGCTTCSE
T ss_pred             CcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCc-cccccccc--CCCCCEEECCCCCC-CCChhhccCCCCCE
Confidence            332  12233                   45555555432 22232222  35788888888743 33445567889999


Q ss_pred             EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCC
Q 035836          223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQ  302 (380)
Q Consensus       223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~  302 (380)
                      |++++|......+ ..   +..+++|+.|++++  +.+..++...       ..+++|++|++++ +.+..+|..+..++
T Consensus       259 L~Ls~N~l~~~~~-~~---~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~  324 (597)
T 3oja_B          259 VDLSYNELEKIMY-HP---FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFD  324 (597)
T ss_dssp             EECCSSCCCEEES-GG---GTTCSSCCEEECTT--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHT
T ss_pred             EECCCCccCCCCH-HH---hcCccCCCEEECCC--CCCCCCCccc-------ccCCCCcEEECCC-CCCCccCcccccCC
Confidence            9999986544322 22   67889999999998  5666666544       4678999999999 57888888888999


Q ss_pred             CCceEeeecCCCCcccCCCCCcccccEEEecCchhHHH
Q 035836          303 NLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEE  340 (380)
Q Consensus       303 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~  340 (380)
                      +|++|++++ +.++.++.. ..++|+.|++++|+.-..
T Consensus       325 ~L~~L~L~~-N~l~~~~~~-~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          325 RLENLYLDH-NSIVTLKLS-THHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCSEEECCS-SCCCCCCCC-TTCCCSEEECCSSCEEHH
T ss_pred             CCCEEECCC-CCCCCcChh-hcCCCCEEEeeCCCCCCh
Confidence            999999999 557777643 356899999999876554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=2.1e-20  Score=189.42  Aligned_cols=250  Identities=16%  Similarity=0.172  Sum_probs=130.3

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec-cCCCccCCCCCEEec
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTRLDI  178 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l  178 (380)
                      +|++|++++|......+..+..+++|++|++++|......+..+..+++|++|+++++ .+..+ +..+..+++|+.|++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEEC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEEC
Confidence            3455555544322233344555556666666653333333344555666666666653 33333 334445566666666


Q ss_pred             cCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcc-------------------hhhhhhc
Q 035836          179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIW-------------------KSTIEWG  239 (380)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~  239 (380)
                      ++|......+..+..+++|+.|++++|.. +.++   .+++|+.|++++|....                   .......
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~---~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~  421 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIH---FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF  421 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCS---SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHH
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCC-Cccc---CCCCcchhccCCCCcccccccccccceeecccCccccCchhhh
Confidence            66533222233455566666666665532 1111   12233333333222110                   0000000


Q ss_pred             cccCCCCccceeeeecCCCCCcccccc---------------c---------ccccCCCCCCCCcceEecccCCCccchh
Q 035836          240 RGFHRFSSLRRLAISGCDDDMVSFPLE---------------D---------KRLGTALPLPASLTSLWIEDFPNLERLS  295 (380)
Q Consensus       240 ~~~~~~~~L~~L~l~~~~~~l~~~~~~---------------~---------~~~~~~~~~~~~L~~L~l~~~~~l~~l~  295 (380)
                        +..+++|+.|++++  +.+..++..               .         +.....+..+++|++|++++ +.++.++
T Consensus       422 --~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~  496 (844)
T 3j0a_A          422 --LLRVPHLQILILNQ--NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLP  496 (844)
T ss_dssp             --HTTCTTCCEEEEES--CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCC
T ss_pred             --hhcCCccceeeCCC--CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC-CcccccC
Confidence              22455666666655  222211110               0         00112245668888888888 4777766


Q ss_pred             h-hhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeec
Q 035836          296 S-SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD  368 (380)
Q Consensus       296 ~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (380)
                      . .+.++++|++|++++ +.++.++...++++|+.|++++|....     ....   .++.+..+.+.++++.-
T Consensus       497 ~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l~~-----~~~~---~~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          497 PGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLA-----PNPD---VFVSLSVLDITHNKFIC  561 (844)
T ss_dssp             TTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECCCC-----CCSC---CCSSCCEEEEEEECCCC
T ss_pred             hhHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCcCCC-----CChh---HhCCcCEEEecCCCccc
Confidence            5 678899999999998 678888887777889999998865322     1222   23456777777776643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=1.1e-20  Score=191.49  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             CCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCC
Q 035836          195 TSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTA  273 (380)
Q Consensus       195 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~  273 (380)
                      ++|+.|++++|......+ ....+++|+.|++++|....... ..   +..+++|+.|++++  +.+..+...      .
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~---~~~l~~L~~L~Ls~--N~l~~~~~~------~  333 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EA---FYGLDNLQVLNLSY--NLLGELYSS------N  333 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TT---TTTCSSCCEEEEES--CCCSCCCSC------S
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HH---hcCCCCCCEEECCC--CCCCccCHH------H
Confidence            456666666553322222 12445666666666654332211 11   55666666666666  233333221      1


Q ss_pred             CCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCc
Q 035836          274 LPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDC  335 (380)
Q Consensus       274 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c  335 (380)
                      +..+++|++|++++ +.+..++. .+.++++|++|++++ +.++.++.   .++|+.|++++|
T Consensus       334 ~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~---~~~L~~L~l~~N  391 (844)
T 3j0a_A          334 FYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRD-NALTTIHF---IPSIPDIFLSGN  391 (844)
T ss_dssp             CSSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEET-CCSCCCSS---CCSCSEEEEESC
T ss_pred             hcCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCC-CCCCcccC---CCCcchhccCCC
Confidence            24566677777766 35555544 466666677777766 34444332   334445554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=5.4e-21  Score=183.60  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             CCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecC
Q 035836            6 SSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSC   73 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~   73 (380)
                      ++|++|++++|. +..+++  +..+++|++|+++++. +..+..+ .+..++.        |++|+++++
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~N   79 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDIS-VFKFNQE--------LEYLDLSHN   79 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGG-GGTTCTT--------CCEEECCSS
T ss_pred             ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChH-HhhcccC--------CCEEecCCC
Confidence            456666666653 333322  3445666666666665 5554433 3455555        666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=1.2e-20  Score=183.00  Aligned_cols=157  Identities=17%  Similarity=0.076  Sum_probs=81.1

Q ss_pred             CCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc-ccccccc
Q 035836          192 HNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS-FPLEDKR  269 (380)
Q Consensus       192 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-~~~~~~~  269 (380)
                      ..+++|+.|++++|......+ ....+++|+.|++++|...........  +..+++|+.|++++ + .+.. ++...  
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~l~~L~~L~l~~-N-~l~~~~~~~~--  423 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM--TKNMSSLETLDVSL-N-SLNSHAYDRT--  423 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT--TTTCTTCCEEECTT-S-CCBSCCSSCC--
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh--hcCCCCCCEEECCC-C-cCCCccChhh--
Confidence            345556666666554333222 224556666666666543321111111  45566666666666 2 3332 44321  


Q ss_pred             ccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCcccCCCCC-cccccEEEecCchhHHHHhhccCC
Q 035836          270 LGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKYFPEKGL-PSSLLELWIWDCPLIEEKCRKDGG  347 (380)
Q Consensus       270 ~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~  347 (380)
                          +..+++|++|+++++ .++ ..+..+.  ++|++|++++ +.++.+|.... .++|++|++++|..- .    ...
T Consensus       424 ----~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N~l~-~----l~~  490 (562)
T 3a79_B          424 ----CAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLK-S----VPD  490 (562)
T ss_dssp             ----CCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSSCCC-C----CCT
T ss_pred             ----hcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCC-CcCcccChhhcCCCCCCEEECCCCCCC-C----CCH
Confidence                235566777777763 332 2222221  5777777777 46666665322 457777777776432 1    111


Q ss_pred             CCCccccCcCeeEECceeee
Q 035836          348 QYWNLLTHIPYVSIDYKWVF  367 (380)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~  367 (380)
                      ..+..++++..+.+.++++.
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          491 GVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TSTTTCTTCCCEECCSCCBC
T ss_pred             HHHhcCCCCCEEEecCCCcC
Confidence            12445566667777666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=5.7e-21  Score=186.33  Aligned_cols=287  Identities=15%  Similarity=0.156  Sum_probs=203.9

Q ss_pred             CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836           28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS  107 (380)
Q Consensus        28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  107 (380)
                      +++++.|++.++. +..+|.. .+..++.        |+.|+++++. +..+      +   +. .+..++ +|++|+++
T Consensus        50 l~~l~~l~l~~~~-l~~lp~~-~~~~l~~--------L~~L~L~~n~-l~~~------~---~~-~~~~l~-~L~~L~L~  107 (597)
T 3oja_B           50 LNNQKIVTFKNST-MRKLPAA-LLDSFRQ--------VELLNLNDLQ-IEEI------D---TY-AFAYAH-TIQKLYMG  107 (597)
T ss_dssp             GCCCSEEEESSCE-ESEECTH-HHHHCCC--------CSEEECTTSC-CCEE------C---TT-TTTTCT-TCCEEECC
T ss_pred             CCCceEEEeeCCC-CCCcCHH-HHccCCC--------CcEEECCCCC-CCCC------C---hH-HhcCCC-CCCEEECC
Confidence            6889999999987 8888876 6778888        9999999874 4333      1   11 355666 69999999


Q ss_pred             cCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcc
Q 035836          108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLE  185 (380)
Q Consensus       108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~  185 (380)
                      +|......|..++.+++|++|++++| .+..+|.. +..+++|++|+++++ .+..+++ .+..+++|++|++++|... 
T Consensus       108 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-  184 (597)
T 3oja_B          108 FNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT-  184 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred             CCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC-
Confidence            99644445556799999999999995 56677765 578999999999995 5665554 5677899999999987543 


Q ss_pred             cccccCCCCCCccEEEeccCCC------------------CCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836          186 ALPKGLHNLTSLQELTIGKGVE------------------LPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS  247 (380)
Q Consensus       186 ~~~~~l~~~~~L~~L~l~~~~~------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  247 (380)
                      .++  +..+++|+.|++++|..                  +..++ ...+++|+.|++++|.... ..  +   +..+++
T Consensus       185 ~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~-~~--~---l~~l~~  255 (597)
T 3oja_B          185 HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD-TA--W---LLNYPG  255 (597)
T ss_dssp             BCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE-CSCCSCCCEEECCSSCCCC-CG--G---GGGCTT
T ss_pred             CcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc-cccCCCCCEEECCCCCCCC-Ch--h---hccCCC
Confidence            222  23344555555544421                  11111 1234678888888876443 22  1   678899


Q ss_pred             cceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcc
Q 035836          248 LRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPS  325 (380)
Q Consensus       248 L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~  325 (380)
                      |+.|++++ | .+..+ +..+       ..+++|++|++++ +.+..+|..+..+++|++|++++ +.++.+|.. ...+
T Consensus       256 L~~L~Ls~-N-~l~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~  324 (597)
T 3oja_B          256 LVEVDLSY-N-ELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFD  324 (597)
T ss_dssp             CSEEECCS-S-CCCEEESGGG-------TTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHT
T ss_pred             CCEEECCC-C-ccCCCCHHHh-------cCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCC-CCCCccCcccccCC
Confidence            99999998 3 44444 4444       5788999999998 58888887778899999999998 457676652 1256


Q ss_pred             cccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeee
Q 035836          326 SLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVF  367 (380)
Q Consensus       326 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (380)
                      +|+.|++++|....        ..+..++.+..+.+.++++.
T Consensus       325 ~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          325 RLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             TCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSCEE
T ss_pred             CCCEEECCCCCCCC--------cChhhcCCCCEEEeeCCCCC
Confidence            89999999986422        12445667888888887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=1.8e-20  Score=176.42  Aligned_cols=265  Identities=16%  Similarity=0.213  Sum_probs=154.3

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS   81 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   81 (380)
                      ++.+++|++|++++| .++.++ ...+++|++|+++++. +..++    +..++.        |+.|+++++. ++.+  
T Consensus        60 l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~--------L~~L~L~~N~-l~~l--  121 (457)
T 3bz5_A           60 IEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD----VTPLTK--------LTYLNCDTNK-LTKL--  121 (457)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC----CTTCTT--------CCEEECCSSC-CSCC--
T ss_pred             hcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee----cCCCCc--------CCEEECCCCc-CCee--
Confidence            456788899999887 455554 6667888888888887 66553    445556        8888887763 3333  


Q ss_pred             cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCc---------------------cc
Q 035836           82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI---------------------LP  140 (380)
Q Consensus        82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------------~~  140 (380)
                                 ++..++ +|++|++++|. +..+  .++.+++|++|++++|..+..                     +|
T Consensus       122 -----------~~~~l~-~L~~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          122 -----------DVSQNP-LLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             -----------CCTTCT-TCCEEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred             -----------cCCCCC-cCCEEECCCCc-ccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence                       233444 35555555543 2222  144444555555554433333                     33


Q ss_pred             ccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCc
Q 035836          141 SGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNL  220 (380)
Q Consensus       141 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  220 (380)
                        +..+++|+.|++++ +.+..+  .+..+++|+.|++++|.. +.+|  +..+++|+.|++++|.. +..+ ...+++|
T Consensus       187 --l~~l~~L~~L~l~~-N~l~~~--~l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~~N~l-~~~~-~~~l~~L  256 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDT-NNITKL--DLNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPL-TELD-VSTLSKL  256 (457)
T ss_dssp             --CTTCTTCCEEECCS-SCCSCC--CCTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCC-SCCC-CTTCTTC
T ss_pred             --cccCCCCCEEECcC-CcCCee--ccccCCCCCEEECcCCcc-cccC--ccccCCCCEEEeeCCcC-CCcC-HHHCCCC
Confidence              33445555555544 233333  133455666666665432 2344  55566666666666532 2222 2233444


Q ss_pred             eEEE----------ecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccC-CCCCCCCcceEecccCC
Q 035836          221 HSLE----------IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGT-ALPLPASLTSLWIEDFP  289 (380)
Q Consensus       221 ~~L~----------l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~  289 (380)
                      +.|+          +++|......+      +..+++|+.|++++ |..+..++.....+.. .+...++|++|++++ +
T Consensus       257 ~~L~l~~n~L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls~-n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N  328 (457)
T 3bz5_A          257 TTLHCIQTDLLEIDLTHNTQLIYFQ------AEGCRKIKELDVTH-NTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-T  328 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEE------CTTCTTCCCCCCTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-C
T ss_pred             CEEeccCCCCCEEECCCCccCCccc------ccccccCCEEECCC-CcccceeccCCCcceEechhhcccCCEEECCC-C
Confidence            4333          33333222211      45678999999999 7777777653322221 245668899999998 5


Q ss_pred             CccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836          290 NLERLSSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       290 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      .++.++  +.++++|+.|++++ +.++.++.
T Consensus       329 ~l~~l~--l~~l~~L~~L~l~~-N~l~~l~~  356 (457)
T 3bz5_A          329 ELTELD--VSHNTKLKSLSCVN-AHIQDFSS  356 (457)
T ss_dssp             CCSCCC--CTTCTTCSEEECCS-SCCCBCTT
T ss_pred             cccccc--cccCCcCcEEECCC-CCCCCccc
Confidence            777764  88899999999998 67776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=2.2e-20  Score=185.23  Aligned_cols=264  Identities=14%  Similarity=0.073  Sum_probs=157.6

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCC----------------------------CCCcccccccC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCE----------------------------SLKILPSGLHN  145 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------------------~~~~~~~~~~~  145 (380)
                      +..++ +|++|++++|......+..+..+++|++|++++|.                            .....|..+..
T Consensus       325 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          325 FQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             cccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            33445 47777777664333344456666666666666542                            11112333444


Q ss_pred             CCCCcEEEccccccceecc-CCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCC--CCCC-CCCCCCCce
Q 035836          146 LRQLQKIEIWECENLVSFT-EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVEL--PSLE-EDGLPTNLH  221 (380)
Q Consensus       146 l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~-~~~~~~~L~  221 (380)
                      +++|+.|+++++.....++ ..+..+++|+.|++++|......+..+..+++|+.|++.+|...  ...+ ....+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            5566666665532222333 23334556666666665443333445556666777776665421  2222 235678888


Q ss_pred             EEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccc--cccCCCCCCCCcceEecccCCCccchhh-hh
Q 035836          222 SLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK--RLGTALPLPASLTSLWIEDFPNLERLSS-SI  298 (380)
Q Consensus       222 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~  298 (380)
                      .|++++|... ......   +.++++|+.|++++  +.+..++....  .....+..+++|++|++++ +.++.+|. .+
T Consensus       484 ~L~Ls~N~l~-~i~~~~---~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~  556 (680)
T 1ziw_A          484 ILDLSNNNIA-NINDDM---LEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF  556 (680)
T ss_dssp             EEECCSSCCC-CCCTTT---TTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             EEECCCCCCC-cCChhh---hccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHc
Confidence            8888887643 333322   66788889999987  45555432110  0011245678999999998 57888877 68


Q ss_pred             ccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchhHHHHhhccCCCCCc-cccCcCeeEECceeeecCCC
Q 035836          299 VDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWN-LLTHIPYVSIDYKWVFDDDP  371 (380)
Q Consensus       299 ~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  371 (380)
                      .++++|++|++++ +.++.++...+  .++|+.|++++|..-.     .....+. .++.+..+.+.++++.-+.+
T Consensus       557 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          557 KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITS-----VEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCCB-----CCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCCc-----cChhHhcccccccCEEEccCCCcccCCc
Confidence            8999999999987 78888887654  4789999999873211     1111111 35577888888887766554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=3.1e-21  Score=186.56  Aligned_cols=60  Identities=22%  Similarity=0.390  Sum_probs=47.9

Q ss_pred             CCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCchh
Q 035836          275 PLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCPL  337 (380)
Q Consensus       275 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~  337 (380)
                      ..+++|++|++++ +.++.+|. ...+++|++|++++ +.++.++...+  .++|+.|++++|+.
T Consensus       448 ~~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          448 LFLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CCCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             ccCChhcEEECCC-CccCcCCC-cccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCCc
Confidence            3678899999998 57788886 46789999999999 57888776433  57899999988763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=2.5e-20  Score=168.38  Aligned_cols=287  Identities=14%  Similarity=0.188  Sum_probs=205.0

Q ss_pred             CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836           30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC  109 (380)
Q Consensus        30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~  109 (380)
                      +++.++++++. +..+|.. .   .+.        ++.|+++++. ++.+      +.   . .+..++ +|++|++++|
T Consensus        32 ~l~~l~~~~~~-l~~lp~~-~---~~~--------l~~L~L~~n~-i~~~------~~---~-~~~~l~-~L~~L~L~~n   86 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVPKD-L---PPD--------TALLDLQNNK-ITEI------KD---G-DFKNLK-NLHTLILINN   86 (330)
T ss_dssp             ETTEEECTTSC-CCSCCCS-C---CTT--------CCEEECCSSC-CCCB------CT---T-TTTTCT-TCCEEECCSS
T ss_pred             CCeEEEecCCC-ccccCcc-C---CCC--------CeEEECCCCc-CCEe------Ch---h-hhccCC-CCCEEECCCC
Confidence            78888888876 7777654 1   134        9999999864 4433      11   0 355667 6999999998


Q ss_pred             CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcc--c
Q 035836          110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLE--A  186 (380)
Q Consensus       110 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~--~  186 (380)
                      ......|..+..+++|++|++++ +.+..+|..+.  ++|++|+++++ .+..++. .+..+++|+.|++++|....  .
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  162 (330)
T 1xku_A           87 KISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGI  162 (330)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             cCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCc
Confidence            64444478889999999999998 45667776653  79999999984 5665554 34568899999999876532  4


Q ss_pred             ccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccc
Q 035836          187 LPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLE  266 (380)
Q Consensus       187 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~  266 (380)
                      .+..+..+++|+.|++++|.. +.++.. .+++|++|++++|.... ..+..   +..+++|+.|++++  +.+..++..
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l-~~l~~~-~~~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~Ls~--n~l~~~~~~  234 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNI-TTIPQG-LPPSLTELHLDGNKITK-VDAAS---LKGLNNLAKLGLSF--NSISAVDNG  234 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCC-CSCCSS-CCTTCSEEECTTSCCCE-ECTGG---GTTCTTCCEEECCS--SCCCEECTT
T ss_pred             ChhhccCCCCcCEEECCCCcc-ccCCcc-ccccCCEEECCCCcCCc-cCHHH---hcCCCCCCEEECCC--CcCceeChh
Confidence            456778899999999998853 444432 34899999999987443 32222   77899999999998  455555542


Q ss_pred             cccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--------cccccEEEecCchhH
Q 035836          267 DKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--------PSSLLELWIWDCPLI  338 (380)
Q Consensus       267 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~l  338 (380)
                      .      +..+++|++|++++ +.++.+|..+..+++|++|++++ +.++.++...+        ..+++.+++.+++..
T Consensus       235 ~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          235 S------LANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             T------GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             h------ccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCccc
Confidence            2      24678999999999 58889988899999999999999 67888876444        257889999998753


Q ss_pred             HHHhhccCCCCCccccCcCeeEECce
Q 035836          339 EEKCRKDGGQYWNLLTHIPYVSIDYK  364 (380)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (380)
                      ..   ......+.....+..+.+.++
T Consensus       307 ~~---~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          307 YW---EIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GG---GSCGGGGTTCCCGGGEEC---
T ss_pred             cc---ccCccccccccceeEEEeccc
Confidence            31   122234555566666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=3.2e-21  Score=173.96  Aligned_cols=217  Identities=22%  Similarity=0.257  Sum_probs=117.3

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      ++++|++++|. +..+|..+..+++|++|++++| .+..+|..+..+++|++|++++ +.+..+|..+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECC
Confidence            35555555553 4455555555555555555553 2335555555555555555555 2344555555555555555555


Q ss_pred             CCCCcccccccCC---------CCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          180 DCERLEALPKGLH---------NLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       180 ~~~~~~~~~~~l~---------~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      +|.....+|..+.         ++++|+.|++++|.. +.+|. ...+++|++|++++|........     +..+++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-----l~~l~~L~  232 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPA-----IHHLPKLE  232 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGG-----GGGCTTCC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchh-----hccCCCCC
Confidence            5555555554333         255666666665532 23332 24455666666666543321111     44566666


Q ss_pred             eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCccccc
Q 035836          250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLL  328 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~  328 (380)
                      +|++++ |.....++...       ..+++|++|++++|.....+|..+.++++|++|++++|+.+..+|.. .-.++++
T Consensus       233 ~L~Ls~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          233 ELDLRG-CTALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             EEECTT-CTTCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             EEECcC-CcchhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            666666 55555555444       45566666666666666666666666666666666666666666552 1134555


Q ss_pred             EEEec
Q 035836          329 ELWIW  333 (380)
Q Consensus       329 ~L~l~  333 (380)
                      .+++.
T Consensus       305 ~l~l~  309 (328)
T 4fcg_A          305 IILVP  309 (328)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            55554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=3.1e-20  Score=171.76  Aligned_cols=288  Identities=15%  Similarity=0.144  Sum_probs=203.1

Q ss_pred             CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      .+++++.|++.++. ++.++.. .+..+++        |+.|+++++. +..+.     +.     .+..++ +|++|++
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~-~~~~l~~--------L~~L~L~~n~-i~~~~-----~~-----~~~~l~-~L~~L~L  100 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAA-LLDSFRQ--------VELLNLNDLQ-IEEID-----TY-----AFAYAH-TIQKLYM  100 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTH-HHHHCCC--------CSEEECTTSC-CCEEC-----TT-----TTTTCT-TCCEEEC
T ss_pred             ccCCceEEEecCCc-hhhCChh-Hhccccc--------CcEEECCCCc-ccccC-----hh-----hccCCC-CcCEEEC
Confidence            36899999999997 8888876 6788888        9999999874 33330     00     345666 6999999


Q ss_pred             ecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCc
Q 035836          107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERL  184 (380)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~  184 (380)
                      ++|......|..+..+++|++|++++| .+..+|.. +..+++|++|+++++ .+..++. .+..+++|++|++++|...
T Consensus       101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          101 GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC
Confidence            998644444566889999999999994 66677766 478999999999984 5666654 4667899999999987543


Q ss_pred             ccccccCCCCCCccEEEeccCCC------------------CCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836          185 EALPKGLHNLTSLQELTIGKGVE------------------LPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS  246 (380)
Q Consensus       185 ~~~~~~l~~~~~L~~L~l~~~~~------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  246 (380)
                       .++  +..+++|+.|+++++..                  +..++ ...+++|+.|++++|..... .  +   +..++
T Consensus       179 -~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~~-~--~---l~~l~  248 (390)
T 3o6n_A          179 -HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDT-A--W---LLNYP  248 (390)
T ss_dssp             -BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCCC-G--G---GGGCT
T ss_pred             -ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc-ccccccccEEECCCCCCccc-H--H---HcCCC
Confidence             222  23344555555544321                  11121 12346788888888764432 2  1   66788


Q ss_pred             ccceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCc
Q 035836          247 SLRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLP  324 (380)
Q Consensus       247 ~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~  324 (380)
                      +|++|++++  +.+..+ +...       ..+++|++|++++ +.++.++..+..+++|++|++++| .++.++.. ...
T Consensus       249 ~L~~L~Ls~--n~l~~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l  317 (390)
T 3o6n_A          249 GLVEVDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF  317 (390)
T ss_dssp             TCSEEECCS--SCCCEEESGGG-------TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH
T ss_pred             CccEEECCC--CcCCCcChhHc-------cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCcccccc
Confidence            999999998  345444 3333       5778999999998 578888777778899999999985 67776552 124


Q ss_pred             ccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeee
Q 035836          325 SSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVF  367 (380)
Q Consensus       325 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (380)
                      ++|++|++++|+...     .   ....++.+..+.+.++++.
T Consensus       318 ~~L~~L~L~~N~i~~-----~---~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          318 DRLENLYLDHNSIVT-----L---KLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TTCSEEECCSSCCCC-----C---CCCTTCCCSEEECCSSCEE
T ss_pred             CcCCEEECCCCccce-----e---CchhhccCCEEEcCCCCcc
Confidence            689999999876322     1   2344567888888887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=9.5e-21  Score=170.84  Aligned_cols=219  Identities=21%  Similarity=0.306  Sum_probs=182.3

Q ss_pred             cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccccc
Q 035836           65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLH  144 (380)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  144 (380)
                      ++.|+++++. +..+      |.     .++.++ +|++|++++|. +..+|..+..+++|++|++++| .+..+|..+.
T Consensus        83 l~~L~L~~n~-l~~l------p~-----~l~~l~-~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~  147 (328)
T 4fcg_A           83 RVALELRSVP-LPQF------PD-----QAFRLS-HLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIA  147 (328)
T ss_dssp             CCEEEEESSC-CSSC------CS-----CGGGGT-TCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGG
T ss_pred             eeEEEccCCC-chhc------Ch-----hhhhCC-CCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHh
Confidence            9999999864 3333      32     244566 69999999986 5588888999999999999995 5558898899


Q ss_pred             CCCCCcEEEccccccceeccCCCcc---------CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCC
Q 035836          145 NLRQLQKIEIWECENLVSFTEGGLP---------CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDG  215 (380)
Q Consensus       145 ~l~~L~~L~l~~~~~l~~l~~~~~~---------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  215 (380)
                      .+++|++|++++|+....+|..+..         +++|++|++++|. ++.+|..+..+++|+.|++++|......+...
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~  226 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIH  226 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence            9999999999998888888876654         8899999999974 45888889999999999999986544333456


Q ss_pred             CCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchh
Q 035836          216 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS  295 (380)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  295 (380)
                      .+++|+.|++++|......+. .   +..+++|+.|++++ |.....++...       ..+++|++|++++|+.+..+|
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~-~---~~~l~~L~~L~L~~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPP-I---FGGRAPLKRLILKD-CSNLLTLPLDI-------HRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCC-C---TTCCCCCCEEECTT-CTTCCBCCTTG-------GGCTTCCEEECTTCTTCCCCC
T ss_pred             cCCCCCEEECcCCcchhhhHH-H---hcCCCCCCEEECCC-CCchhhcchhh-------hcCCCCCEEeCCCCCchhhcc
Confidence            789999999999987765543 1   67899999999999 78888888766       578999999999999999999


Q ss_pred             hhhccCCCCceEeeec
Q 035836          296 SSIVDLQNLTILQLID  311 (380)
Q Consensus       296 ~~~~~~~~L~~L~l~~  311 (380)
                      ..+.++++|+.+.+..
T Consensus       295 ~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          295 SLIAQLPANCIILVPP  310 (328)
T ss_dssp             GGGGGSCTTCEEECCG
T ss_pred             HHHhhccCceEEeCCH
Confidence            9999999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=5.2e-20  Score=166.47  Aligned_cols=286  Identities=16%  Similarity=0.215  Sum_probs=206.4

Q ss_pred             CCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC
Q 035836           30 SLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC  109 (380)
Q Consensus        30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~  109 (380)
                      +++.++++++. ++.+|.. .   .+.        ++.|+++++. +..+      +   +. .+..++ +|++|++++|
T Consensus        34 ~l~~l~~~~~~-l~~ip~~-~---~~~--------l~~L~l~~n~-i~~~------~---~~-~~~~l~-~L~~L~L~~n   88 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVPKE-I---SPD--------TTLLDLQNND-ISEL------R---KD-DFKGLQ-HLYALVLVNN   88 (332)
T ss_dssp             ETTEEECCSSC-CSSCCSC-C---CTT--------CCEEECCSSC-CCEE------C---TT-TTTTCT-TCCEEECCSS
T ss_pred             cCCEEECCCCC-ccccCCC-C---CCC--------CeEEECCCCc-CCcc------C---Hh-HhhCCC-CCcEEECCCC
Confidence            68999998887 7777764 2   245        9999999864 3333      1   11 356677 6999999998


Q ss_pred             CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEeccCCCCc--cc
Q 035836          110 SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIYDCERL--EA  186 (380)
Q Consensus       110 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~--~~  186 (380)
                      ......|..+..+++|++|++++ +.+..+|..+.  ++|++|++++ +.+..++.. +..+++|++|++++|...  ..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  164 (332)
T 2ft3_A           89 KISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF  164 (332)
T ss_dssp             CCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred             ccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence            64444578899999999999998 45667776654  7999999998 567777664 566889999999987653  24


Q ss_pred             ccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccc
Q 035836          187 LPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLE  266 (380)
Q Consensus       187 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~  266 (380)
                      .+..+..+ +|+.|++++|.. +.++.. .+++|++|++++|..... ....   +..+++|+.|++++  +.+..++..
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l-~~l~~~-~~~~L~~L~l~~n~i~~~-~~~~---l~~l~~L~~L~L~~--N~l~~~~~~  235 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKL-TGIPKD-LPETLNELHLDHNKIQAI-ELED---LLRYSKLYRLGLGH--NQIRMIENG  235 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBC-SSCCSS-SCSSCSCCBCCSSCCCCC-CTTS---STTCTTCSCCBCCS--SCCCCCCTT
T ss_pred             CcccccCC-ccCEEECcCCCC-CccCcc-ccCCCCEEECCCCcCCcc-CHHH---hcCCCCCCEEECCC--CcCCcCChh
Confidence            45566666 899999998853 344432 347999999999864433 2222   77889999999998  456555542


Q ss_pred             cccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--------cccccEEEecCchhH
Q 035836          267 DKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--------PSSLLELWIWDCPLI  338 (380)
Q Consensus       267 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~l  338 (380)
                      .      +..+++|++|++++ +.++.+|..+..+++|++|++++ +.++.++...+        ..+++.|++.+++..
T Consensus       236 ~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          236 S------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             G------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             H------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCccc
Confidence            2      25778999999999 58889998899999999999999 67888876433        346899999998854


Q ss_pred             HHHhhccCCCCCccccCcCeeEECce
Q 035836          339 EEKCRKDGGQYWNLLTHIPYVSIDYK  364 (380)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (380)
                      ...   .....+..++.+..+.+.++
T Consensus       308 ~~~---~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          308 YWE---VQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGG---SCGGGGTTBCCSTTEEC---
T ss_pred             ccc---cCcccccccchhhhhhcccc
Confidence            321   22234555666777766544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=3.2e-20  Score=180.20  Aligned_cols=89  Identities=15%  Similarity=0.141  Sum_probs=44.3

Q ss_pred             CCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc--ccCCC-CCcccccEEEecCchhHHHHhhccCCCCCc
Q 035836          275 PLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK--YFPEK-GLPSSLLELWIWDCPLIEEKCRKDGGQYWN  351 (380)
Q Consensus       275 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  351 (380)
                      ..+++|++|++++|......+..+.++++|++|++++|. ++  .+|.. .-.++|++|++++|...     ......+.
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~  491 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLE-----QLSPTAFN  491 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCC-----EECTTTTT
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccc-----cCChhhhh
Confidence            344555555555532222233355556666666666543 22  23321 12346666666665322     12223344


Q ss_pred             cccCcCeeEECceeeecC
Q 035836          352 LLTHIPYVSIDYKWVFDD  369 (380)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~  369 (380)
                      .++.+..+.+.++.+...
T Consensus       492 ~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          492 SLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             TCTTCCEEECCSSCCSCC
T ss_pred             cccCCCEEeCCCCcCCCC
Confidence            556677777777666444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=1.4e-19  Score=163.60  Aligned_cols=282  Identities=17%  Similarity=0.227  Sum_probs=196.3

Q ss_pred             CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836            7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP   86 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   86 (380)
                      +++.++++++ .++.+|. ...++|+.|+++++. +..++.. .+..+++        |++|+++++. +..+.     +
T Consensus        32 ~l~~l~~~~~-~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~~-----~   93 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPK-DLPPDTALLDLQNNK-ITEIKDG-DFKNLKN--------LHTLILINNK-ISKIS-----P   93 (330)
T ss_dssp             ETTEEECTTS-CCCSCCC-SCCTTCCEEECCSSC-CCCBCTT-TTTTCTT--------CCEEECCSSC-CCCBC-----T
T ss_pred             CCeEEEecCC-CccccCc-cCCCCCeEEECCCCc-CCEeChh-hhccCCC--------CCEEECCCCc-CCeeC-----H
Confidence            6788888775 4556654 345899999999987 8887765 5677777        9999999864 32220     1


Q ss_pred             ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccce---e
Q 035836           87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLV---S  162 (380)
Q Consensus        87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~---~  162 (380)
                      .     .+..++ +|++|++++|. +..+|..+.  ++|++|++++| .+..++ ..+..+++|+.|+++++ .+.   .
T Consensus        94 ~-----~~~~l~-~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~  162 (330)
T 1xku_A           94 G-----AFAPLV-KLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGI  162 (330)
T ss_dssp             T-----TTTTCT-TCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGB
T ss_pred             H-----HhcCCC-CCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCc
Confidence            1     355666 69999999885 666666553  79999999985 444444 45778999999999885 343   3


Q ss_pred             ccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccc
Q 035836          163 FTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRG  241 (380)
Q Consensus       163 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  241 (380)
                      .+..+..+++|+.|++++|. +..+|..+.  ++|+.|++++|......+ ....+++|+.|++++|..... ....   
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~---  235 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGS---  235 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTT---
T ss_pred             ChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-Chhh---
Confidence            34455668899999999854 455665543  789999999885433322 346778999999999864432 2222   


Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhc------cCCCCceEeeecCCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIV------DLQNLTILQLIDCPK  314 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~------~~~~L~~L~l~~c~~  314 (380)
                      +..+++|++|++++  +.+..++...       ..+++|++|++++ +.++.++. .+.      ..+.|+.|++.+++ 
T Consensus       236 ~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-  304 (330)
T 1xku_A          236 LANTPHLRELHLNN--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-  304 (330)
T ss_dssp             GGGSTTCCEEECCS--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-
T ss_pred             ccCCCCCCEEECCC--CcCccCChhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-
Confidence            66789999999998  4666777655       5778999999998 57777765 332      24788999999854 


Q ss_pred             Ccc--cCCCCC--cccccEEEecCc
Q 035836          315 LKY--FPEKGL--PSSLLELWIWDC  335 (380)
Q Consensus       315 l~~--~~~~~~--~~~L~~L~l~~c  335 (380)
                      ++.  ++...+  ...++.++++++
T Consensus       305 ~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          305 VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccCccccccccceeEEEeccc
Confidence            433  333222  357888888875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=1e-19  Score=164.48  Aligned_cols=282  Identities=18%  Similarity=0.217  Sum_probs=201.5

Q ss_pred             CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836            7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP   86 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   86 (380)
                      +++.++++++ .++.+|.. .+++|+.|+++++. +..++.. .+..++.        |++|+++++. +..+       
T Consensus        34 ~l~~l~~~~~-~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~-------   93 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKE-ISPDTTLLDLQNND-ISELRKD-DFKGLQH--------LYALVLVNNK-ISKI-------   93 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSC-CCTTCCEEECCSSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCEE-------
T ss_pred             cCCEEECCCC-CccccCCC-CCCCCeEEECCCCc-CCccCHh-HhhCCCC--------CcEEECCCCc-cCcc-------
Confidence            6899999886 56666653 35899999999998 8877665 5777788        9999999874 3322       


Q ss_pred             ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccce---e
Q 035836           87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLV---S  162 (380)
Q Consensus        87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~---~  162 (380)
                        .+. .+..++ +|++|++++|. +..+|..+.  ++|++|++++| .+..++. .+..+++|+.|+++++ .+.   .
T Consensus        94 --~~~-~~~~l~-~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~  164 (332)
T 2ft3_A           94 --HEK-AFSPLR-KLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGF  164 (332)
T ss_dssp             --CGG-GSTTCT-TCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGS
T ss_pred             --CHh-HhhCcC-CCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCC
Confidence              111 356677 69999999985 666766554  79999999985 5555554 4788999999999984 443   2


Q ss_pred             ccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccc
Q 035836          163 FTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRG  241 (380)
Q Consensus       163 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  241 (380)
                      .+..+..+ +|+.|++++|. ++.+|..+.  ++|+.|++++|......+ ....+++|+.|++++|.... .....   
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~---  236 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGS---  236 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTG---
T ss_pred             CcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhH---
Confidence            33344444 89999999864 555666553  789999999985444332 34678899999999986443 33222   


Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhcc------CCCCceEeeecCCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVD------LQNLTILQLIDCPK  314 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~------~~~L~~L~l~~c~~  314 (380)
                      +..+++|+.|++++  +.+..++...       ..+++|++|++++ +.++.++. .+..      .+.|+.|++.+++ 
T Consensus       237 ~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-  305 (332)
T 2ft3_A          237 LSFLPTLRELHLDN--NKLSRVPAGL-------PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-  305 (332)
T ss_dssp             GGGCTTCCEEECCS--SCCCBCCTTG-------GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-
T ss_pred             hhCCCCCCEEECCC--CcCeecChhh-------hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-
Confidence            66889999999998  4677777755       5788999999999 67887765 3333      4679999999965 


Q ss_pred             Cc--ccCCCCC--cccccEEEecCch
Q 035836          315 LK--YFPEKGL--PSSLLELWIWDCP  336 (380)
Q Consensus       315 l~--~~~~~~~--~~~L~~L~l~~c~  336 (380)
                      +.  .++...+  .+.|+.+++++|.
T Consensus       306 ~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          306 VPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccCcccccccchhhhhhccccc
Confidence            44  3433322  4688899998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=9.7e-21  Score=169.72  Aligned_cols=249  Identities=14%  Similarity=0.133  Sum_probs=186.3

Q ss_pred             cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEec-CCChhhhHhhccCCCCccEEeecCCCCCCcccccc
Q 035836           65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH-CSKLESIAERLDNNTSLETIDISNCESLKILPSGL  143 (380)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  143 (380)
                      ++.|+++++. +...       ..++. .+..++ +|++|++++ |.....+|..+..+++|++|++++|.....+|..+
T Consensus        52 l~~L~L~~~~-l~~~-------~~~~~-~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  121 (313)
T 1ogq_A           52 VNNLDLSGLN-LPKP-------YPIPS-SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             EEEEEEECCC-CSSC-------EECCG-GGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             EEEEECCCCC-ccCC-------cccCh-hHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence            8999998864 2210       01122 455677 699999995 65455788889999999999999966555788888


Q ss_pred             cCCCCCcEEEccccccce-eccCCCccCCCCCEEeccCCCCcccccccCCCCC-CccEEEeccCCCCCCCCCC-CCCCCc
Q 035836          144 HNLRQLQKIEIWECENLV-SFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLT-SLQELTIGKGVELPSLEED-GLPTNL  220 (380)
Q Consensus       144 ~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~-~~~~~L  220 (380)
                      ..+++|++|+++++ .+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|......+.. ..++ |
T Consensus       122 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L  199 (313)
T 1ogq_A          122 SQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L  199 (313)
T ss_dssp             GGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred             hCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence            99999999999985 455 6777778889999999999877668888888887 9999999988654334332 3344 9


Q ss_pred             eEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCcc-chhhhhc
Q 035836          221 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIV  299 (380)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~  299 (380)
                      +.|++++|......+ ..   +..+++|+.|++++ + .+.......       ..+++|++|+++++ .+. .+|..+.
T Consensus       200 ~~L~Ls~N~l~~~~~-~~---~~~l~~L~~L~L~~-N-~l~~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~p~~l~  265 (313)
T 1ogq_A          200 AFVDLSRNMLEGDAS-VL---FGSDKNTQKIHLAK-N-SLAFDLGKV-------GLSKNLNGLDLRNN-RIYGTLPQGLT  265 (313)
T ss_dssp             SEEECCSSEEEECCG-GG---CCTTSCCSEEECCS-S-EECCBGGGC-------CCCTTCCEEECCSS-CCEECCCGGGG
T ss_pred             cEEECcCCcccCcCC-HH---HhcCCCCCEEECCC-C-ceeeecCcc-------cccCCCCEEECcCC-cccCcCChHHh
Confidence            999999986543322 22   77899999999998 3 343332223       46789999999995 555 7788899


Q ss_pred             cCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHH
Q 035836          300 DLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIE  339 (380)
Q Consensus       300 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~  339 (380)
                      .+++|++|++++|.--..+|...-.++|+.+++.+++.++
T Consensus       266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            9999999999995433367776556788888998887665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=2.3e-20  Score=167.27  Aligned_cols=251  Identities=17%  Similarity=0.165  Sum_probs=185.2

Q ss_pred             CCCceEeecCCcCcc---ccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEE
Q 035836           29 PSLKQLRISDCDNIR---TLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLY  105 (380)
Q Consensus        29 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~  105 (380)
                      .+++.|+++++. +.   .++.  .+..++.        |++|+++++..+...     +|.     .+..++ +|++|+
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~--~l~~l~~--------L~~L~L~~~n~l~~~-----~p~-----~l~~l~-~L~~L~  107 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPS--SLANLPY--------LNFLYIGGINNLVGP-----IPP-----AIAKLT-QLHYLY  107 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCG--GGGGCTT--------CSEEEEEEETTEESC-----CCG-----GGGGCT-TCSEEE
T ss_pred             ceEEEEECCCCC-ccCCcccCh--hHhCCCC--------CCeeeCCCCCccccc-----CCh-----hHhcCC-CCCEEE
Confidence            578899998887 55   3554  4667777        999999853333321     122     345566 699999


Q ss_pred             EecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccce-eccCCCccCC-CCCEEeccCCCC
Q 035836          106 VSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLV-SFTEGGLPCA-KLTRLDIYDCER  183 (380)
Q Consensus       106 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~-~L~~L~l~~~~~  183 (380)
                      +++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+++++ .+. .+|..+..++ +|+.|++++|..
T Consensus       108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCee
Confidence            9998655578888889999999999986655578888888999999999885 454 7777777776 899999998776


Q ss_pred             cccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc
Q 035836          184 LEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS  262 (380)
Q Consensus       184 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  262 (380)
                      ...+|..+..++ |+.|++++|......+ ....+++|+.|++++|......+.     +..+++|++|++++ |.....
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~-N~l~~~  259 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRN-NRIYGT  259 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCS-SCCEEC
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcC-CcccCc
Confidence            667777777776 9999999885443333 346788999999999875443333     56789999999998 443335


Q ss_pred             cccccccccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCccc
Q 035836          263 FPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKYF  318 (380)
Q Consensus       263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~  318 (380)
                      ++...       ..+++|++|+++++ .+. .+|.. ..+++|+.|++.+++.+...
T Consensus       260 ~p~~l-------~~l~~L~~L~Ls~N-~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          260 LPQGL-------TQLKFLHSLNVSFN-NLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCGGG-------GGCTTCCEEECCSS-EEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CChHH-------hcCcCCCEEECcCC-cccccCCCC-ccccccChHHhcCCCCccCC
Confidence            66555       57789999999994 555 56644 78899999999997756543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=6.4e-19  Score=173.09  Aligned_cols=135  Identities=19%  Similarity=0.133  Sum_probs=96.5

Q ss_pred             CCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccccc
Q 035836          191 LHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKR  269 (380)
Q Consensus       191 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~  269 (380)
                      +..+++++.++++.+......+ ....++.++.|++++|.......+..   +..+++|+.|++++  +.+..++...  
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~--N~L~~l~~~~--  513 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQ--CQLEQLSPTA--  513 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTT--SCCCEECTTT--
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCC--CccCCcChHH--
Confidence            3445555566665553322222 23567889999999987655444333   77899999999998  4666664422  


Q ss_pred             ccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC---cccccEEEecCchhH
Q 035836          270 LGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL---PSSLLELWIWDCPLI  338 (380)
Q Consensus       270 ~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~L~~L~l~~c~~l  338 (380)
                          +..+++|++|++++ +.++.++. .+.++++|++|++++ ++++.++...+   +++|++|+++++|..
T Consensus       514 ----f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          514 ----FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             ----TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             ----HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence                36789999999999 68888765 788999999999999 67888766443   578999999876533

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=4.2e-19  Score=161.90  Aligned_cols=272  Identities=17%  Similarity=0.168  Sum_probs=178.2

Q ss_pred             CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEe
Q 035836           28 PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVS  107 (380)
Q Consensus        28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~  107 (380)
                      |+.....+.++.. ++.+|.+ ..   +.        |++|+++++. ++.+      +.    -.+..++ +|++|+++
T Consensus        30 C~~~~~c~~~~~~-l~~iP~~-~~---~~--------L~~L~l~~n~-i~~~------~~----~~~~~l~-~L~~L~L~   84 (353)
T 2z80_A           30 CDRNGICKGSSGS-LNSIPSG-LT---EA--------VKSLDLSNNR-ITYI------SN----SDLQRCV-NLQALVLT   84 (353)
T ss_dssp             ECTTSEEECCSTT-CSSCCTT-CC---TT--------CCEEECTTSC-CCEE------CT----TTTTTCT-TCCEEECT
T ss_pred             CCCCeEeeCCCCC-ccccccc-cc---cc--------CcEEECCCCc-Cccc------CH----HHhccCC-CCCEEECC
Confidence            4555555665554 6666654 11   24        8888887753 3333      10    0245566 58888888


Q ss_pred             cCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC--CCccCCCCCEEeccCCCCc
Q 035836          108 HCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE--GGLPCAKLTRLDIYDCERL  184 (380)
Q Consensus       108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~  184 (380)
                      +|......+..+..+++|++|++++ +.+..++.. +..+++|++|++++ +.+..++.  .+..+++|++|++++|..+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           85 SNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc
Confidence            8753333455677888888888888 455556654 67788888888887 46666665  4556788888888887655


Q ss_pred             ccc-cccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcc
Q 035836          185 EAL-PKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVS  262 (380)
Q Consensus       185 ~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  262 (380)
                      ..+ +..+..+++|+.|++++|......+ ....+++|++|++++|.. ...+..+   +..+++|+.|++++  +.+..
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~L~~--n~l~~  236 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLELRD--TDLDT  236 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEEEES--CBCTT
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEECCC--Ccccc
Confidence            555 3567788888888888875443333 345678899999988764 3333322   44578899999988  34444


Q ss_pred             cccccccccCCCCCCCCcceEecccCC----CccchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCch
Q 035836          263 FPLEDKRLGTALPLPASLTSLWIEDFP----NLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCP  336 (380)
Q Consensus       263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  336 (380)
                      ++....   ......+.++.+++.++.    .+..+|..+..+++|++|++++ +.++.+|...+  .++|++|++++|+
T Consensus       237 ~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          237 FHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            332110   001234566777776632    2234677788999999999998 57888887543  5789999998875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2.6e-18  Score=161.40  Aligned_cols=242  Identities=17%  Similarity=0.202  Sum_probs=167.5

Q ss_pred             CceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCC
Q 035836           31 LKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCS  110 (380)
Q Consensus        31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~  110 (380)
                      .+.++..+.. +..+|.+ .   .+.        ++.|+++++. +..+.     +    . .+..++ +|++|++++|.
T Consensus        45 ~~~v~c~~~~-l~~iP~~-~---~~~--------l~~L~L~~n~-i~~~~-----~----~-~~~~l~-~L~~L~Ls~n~   99 (440)
T 3zyj_A           45 FSKVICVRKN-LREVPDG-I---STN--------TRLLNLHENQ-IQIIK-----V----N-SFKHLR-HLEILQLSRNH   99 (440)
T ss_dssp             SCEEECCSCC-CSSCCSC-C---CTT--------CSEEECCSCC-CCEEC-----T----T-TTSSCS-SCCEEECCSSC
T ss_pred             CCEEEeCCCC-cCcCCCC-C---CCC--------CcEEEccCCc-CCeeC-----H----H-HhhCCC-CCCEEECCCCc
Confidence            4556655544 6666654 1   134        8888888753 33331     0    0 355666 58888888885


Q ss_pred             ChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCccccc
Q 035836          111 KLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALP  188 (380)
Q Consensus       111 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~  188 (380)
                      .....+..+..+++|++|++++| .+..++. .+..+++|++|++++ +.+..++. .+..+++|++|++++|..+..++
T Consensus       100 i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          100 IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            33334467788888999998884 5555554 467788899999888 45666665 45567888999988877777666


Q ss_pred             c-cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccc
Q 035836          189 K-GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED  267 (380)
Q Consensus       189 ~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~  267 (380)
                      . .+..+++|+.|++++| .++.++....+++|+.|++++|.... ..+..   +..+++|+.|++++  +.+..+....
T Consensus       178 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~--n~l~~~~~~~  250 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSA-IRPGS---FQGLMHLQKLWMIQ--SQIQVIERNA  250 (440)
T ss_dssp             TTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCE-ECTTT---TTTCTTCCEEECTT--CCCCEECTTS
T ss_pred             cchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCc-cChhh---hccCccCCEEECCC--CceeEEChhh
Confidence            4 5778888999998887 44566667778888888888885433 32222   67788888888887  4555554322


Q ss_pred             ccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836          268 KRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       268 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  313 (380)
                            +..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus       251 ------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          251 ------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence                  35678888888888 57777765 66778888888888744

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=3.7e-18  Score=160.56  Aligned_cols=264  Identities=28%  Similarity=0.316  Sum_probs=123.8

Q ss_pred             CCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836            6 SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL   85 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~   85 (380)
                      ++|++|+++++ .++.+|.  .+++|++|+++++. +..++..     .+.        |++|+++++. ++.+      
T Consensus        91 ~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~-----~~~--------L~~L~L~~n~-l~~l------  146 (454)
T 1jl5_A           91 PHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL-----PPL--------LEYLGVSNNQ-LEKL------  146 (454)
T ss_dssp             TTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTT--------CCEEECCSSC-CSSC------
T ss_pred             CCCCEEEccCC-cCCcccc--ccCCCcEEECCCCc-cCcccCC-----CCC--------CCEEECcCCC-CCCC------
Confidence            46777777765 3444543  24667777777664 4443321     123        6677766652 2222      


Q ss_pred             CccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC
Q 035836           86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE  165 (380)
Q Consensus        86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  165 (380)
                      |      .+..++ +|++|++++|. +..+|..   .++|++|++++| .+..+| .+..+++|++|+++++ .+..++.
T Consensus       147 p------~~~~l~-~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~  212 (454)
T 1jl5_A          147 P------ELQNSS-FLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD  212 (454)
T ss_dssp             C------CCTTCT-TCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC
T ss_pred             c------ccCCCC-CCCEEECCCCc-CcccCCC---cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC
Confidence            1      233444 46666666653 3333332   235666666653 333344 3555566666666552 3333332


Q ss_pred             CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhc------
Q 035836          166 GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWG------  239 (380)
Q Consensus       166 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------  239 (380)
                      ..   ++|++|++++|. +..+|. +..+++|+.|++++|.. +.++.  .+++|+.|++++|.... ++. ..      
T Consensus       213 ~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~--~~~~L~~L~l~~N~l~~-l~~-~~~~L~~L  282 (454)
T 1jl5_A          213 LP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLL-KTLPD--LPPSLEALNVRDNYLTD-LPE-LPQSLTFL  282 (454)
T ss_dssp             CC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCC-SSCCS--CCTTCCEEECCSSCCSC-CCC-CCTTCCEE
T ss_pred             Cc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCcC-Ccccc--cccccCEEECCCCcccc-cCc-ccCcCCEE
Confidence            21   355555555542 224442 45555555555555422 22221  22445555554443211 110 00      


Q ss_pred             -------ccc-CCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeec
Q 035836          240 -------RGF-HRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID  311 (380)
Q Consensus       240 -------~~~-~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  311 (380)
                             ..+ ...++|+.|++++  +.+..++          ..+++|++|++++ +.++.+|..   +++|++|++++
T Consensus       283 ~ls~N~l~~l~~~~~~L~~L~l~~--N~l~~i~----------~~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~  346 (454)
T 1jl5_A          283 DVSENIFSGLSELPPNLYYLNASS--NEIRSLC----------DLPPSLEELNVSN-NKLIELPAL---PPRLERLIASF  346 (454)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCS--SCCSEEC----------CCCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCS
T ss_pred             ECcCCccCcccCcCCcCCEEECcC--CcCCccc----------CCcCcCCEEECCC-Ccccccccc---CCcCCEEECCC
Confidence                   000 0012344444433  1222221          1224566666666 345554432   35666666666


Q ss_pred             CCCCcccCCCCCcccccEEEecCch
Q 035836          312 CPKLKYFPEKGLPSSLLELWIWDCP  336 (380)
Q Consensus       312 c~~l~~~~~~~~~~~L~~L~l~~c~  336 (380)
                       +.++.+|.  .+++|++|++++|.
T Consensus       347 -N~l~~lp~--~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          347 -NHLAEVPE--LPQNLKQLHVEYNP  368 (454)
T ss_dssp             -SCCSCCCC--CCTTCCEEECCSSC
T ss_pred             -Cccccccc--hhhhccEEECCCCC
Confidence             35556655  44566666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=1.6e-18  Score=163.39  Aligned_cols=222  Identities=19%  Similarity=0.210  Sum_probs=143.2

Q ss_pred             CCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEE
Q 035836           98 PPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRL  176 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L  176 (380)
                      |.++++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|++|
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEE
Confidence            34678888877753334456677778888888877433333334566777888888877 456666654 4457778888


Q ss_pred             eccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836          177 DIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS  254 (380)
Q Consensus       177 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  254 (380)
                      ++++|......+..+..+++|+.|++++|..+..++.  ...+++|+.|++++|.... .+.     +..+++|+.|+++
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-----LTPLVGLEELEMS  226 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-----CTTCTTCCEEECT
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-----ccccccccEEECc
Confidence            8877654333334567777888888877666655543  3566778888887775432 221     5667788888887


Q ss_pred             cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchh-hhhccCCCCceEeeecCCCCcccCCCCC--cccccEEE
Q 035836          255 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELW  331 (380)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~  331 (380)
                      +  +.+..+....      +..+++|++|++++ +.+..++ ..+.++++|++|++++ +.++.++...+  .++|+.|+
T Consensus       227 ~--N~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          227 G--NHFPEIRPGS------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             T--SCCSEECGGG------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEE
T ss_pred             C--CcCcccCccc------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEE
Confidence            7  3444443321      25677788888887 4555553 3677778888888887 46777766433  45778888


Q ss_pred             ecCch
Q 035836          332 IWDCP  336 (380)
Q Consensus       332 l~~c~  336 (380)
                      +++++
T Consensus       297 L~~Np  301 (452)
T 3zyi_A          297 LHHNP  301 (452)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            77665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=4.7e-18  Score=160.19  Aligned_cols=242  Identities=21%  Similarity=0.245  Sum_probs=167.3

Q ss_pred             CceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCC
Q 035836           31 LKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCS  110 (380)
Q Consensus        31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~  110 (380)
                      ...++..+.. +..+|.+ .   .+.        ++.|+++++. +..+.     +.     .+..++ +|++|++++|.
T Consensus        56 ~~~v~c~~~~-l~~iP~~-~---~~~--------l~~L~L~~n~-i~~~~-----~~-----~~~~l~-~L~~L~Ls~n~  110 (452)
T 3zyi_A           56 FSKVVCTRRG-LSEVPQG-I---PSN--------TRYLNLMENN-IQMIQ-----AD-----TFRHLH-HLEVLQLGRNS  110 (452)
T ss_dssp             SCEEECCSSC-CSSCCSC-C---CTT--------CSEEECCSSC-CCEEC-----TT-----TTTTCT-TCCEEECCSSC
T ss_pred             CcEEEECCCC-cCccCCC-C---CCC--------ccEEECcCCc-CceEC-----HH-----HcCCCC-CCCEEECCCCc
Confidence            4555555444 6666643 1   133        8888888763 33220     11     345666 58888888885


Q ss_pred             ChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCccccc
Q 035836          111 KLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALP  188 (380)
Q Consensus       111 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~  188 (380)
                      .....+..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++. .+..+++|+.|++++|..+..++
T Consensus       111 i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          111 IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            33344467788888889988884 45555544 66788888998888 45666665 45567888999888877777776


Q ss_pred             c-cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccccc
Q 035836          189 K-GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLED  267 (380)
Q Consensus       189 ~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~  267 (380)
                      . .+..+++|+.|++++|. ++.++....+++|+.|++++|......+ ..   +..+++|+.|++++  +.+..+....
T Consensus       189 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~---~~~l~~L~~L~L~~--n~l~~~~~~~  261 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRP-GS---FHGLSSLKKLWVMN--SQVSLIERNA  261 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECG-GG---GTTCTTCCEEECTT--SCCCEECTTT
T ss_pred             hhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCc-cc---ccCccCCCEEEeCC--CcCceECHHH
Confidence            4 56788889999998874 4556667778889999998886544322 22   67888999999987  4555554322


Q ss_pred             ccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836          268 KRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       268 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  313 (380)
                            +..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus       262 ------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          262 ------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             ------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence                  35678899999988 57777766 67788899999998754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=2.1e-18  Score=162.01  Aligned_cols=222  Identities=16%  Similarity=0.235  Sum_probs=175.0

Q ss_pred             CCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccC-CCccCCCCC
Q 035836           97 LPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLT  174 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  174 (380)
                      ++.+++.|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+..++. .+..+++|+
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCC
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCc
Confidence            3447999999998643344578899999999999995 455454 5678899999999998 57777776 456789999


Q ss_pred             EEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceee
Q 035836          175 RLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLA  252 (380)
Q Consensus       175 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  252 (380)
                      .|++++|......+..+..+++|+.|++++|..+..++.  ...+++|+.|++++|... .++.     +..+++|+.|+
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----~~~l~~L~~L~  213 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-----LTPLIKLDELD  213 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-----CTTCSSCCEEE
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-----cCCCcccCEEE
Confidence            999999765444445788999999999999877776654  467899999999998644 3332     77889999999


Q ss_pred             eecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC--cccccE
Q 035836          253 ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLE  329 (380)
Q Consensus       253 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~  329 (380)
                      +++  +.+..+....      +..+++|++|++++ +.++.++. .+.++++|++|++++ +.++.++...+  .++|+.
T Consensus       214 Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          214 LSG--NHLSAIRPGS------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             CTT--SCCCEECTTT------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCE
T ss_pred             CCC--CccCccChhh------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCE
Confidence            998  4666654322      36789999999999 57777655 788999999999999 67888887544  478999


Q ss_pred             EEecCch
Q 035836          330 LWIWDCP  336 (380)
Q Consensus       330 L~l~~c~  336 (380)
                      |++++++
T Consensus       284 L~L~~Np  290 (440)
T 3zyj_A          284 IHLHHNP  290 (440)
T ss_dssp             EECCSSC
T ss_pred             EEcCCCC
Confidence            9998876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=3.1e-18  Score=168.17  Aligned_cols=111  Identities=18%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             CCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchh-hhhccCCCCceEeeecCCCCcccCCC
Q 035836          243 HRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDCPKLKYFPEK  321 (380)
Q Consensus       243 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~  321 (380)
                      ..+++|+.|++++ +.....+..      ..+..+++|++|+++++ .++.++ ..+.++++|++|++++ ++++.++..
T Consensus       466 ~~~~~L~~L~Ls~-N~~~~~~~~------~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~  536 (635)
T 4g8a_A          466 NGLSSLEVLKMAG-NSFQENFLP------DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTF  536 (635)
T ss_dssp             TTCTTCCEEECTT-CEEGGGEEC------SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCG
T ss_pred             ccchhhhhhhhhh-cccccccCc------hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChh
Confidence            3445556666655 332322221      12356778888888884 666664 4788888888888888 567777664


Q ss_pred             CC--cccccEEEecCchhHHHHhhccCCCCCccc-cCcCeeEECceeee
Q 035836          322 GL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLL-THIPYVSIDYKWVF  367 (380)
Q Consensus       322 ~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  367 (380)
                      .+  .++|++|++++|....     ...+.+..+ +.+..+.+.++++.
T Consensus       537 ~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             HHhCCCCCCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCCCc
Confidence            33  4688888888764322     223333334 46777888777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=3.4e-17  Score=154.00  Aligned_cols=293  Identities=26%  Similarity=0.270  Sum_probs=173.2

Q ss_pred             ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836            8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA   87 (380)
Q Consensus         8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~   87 (380)
                      +++|++++| .++.+|.  .+++|++|+++++. +..++..     ...        |+.|+++++. +..+        
T Consensus        73 l~~L~l~~~-~l~~lp~--~~~~L~~L~l~~n~-l~~lp~~-----~~~--------L~~L~l~~n~-l~~l--------  126 (454)
T 1jl5_A           73 AHELELNNL-GLSSLPE--LPPHLESLVASCNS-LTELPEL-----PQS--------LKSLLVDNNN-LKAL--------  126 (454)
T ss_dssp             CSEEECTTS-CCSCCCS--CCTTCSEEECCSSC-CSSCCCC-----CTT--------CCEEECCSSC-CSCC--------
T ss_pred             CCEEEecCC-ccccCCC--CcCCCCEEEccCCc-CCccccc-----cCC--------CcEEECCCCc-cCcc--------
Confidence            466666665 3444443  24667777776665 5544421     133        7777777652 2222        


Q ss_pred             cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC
Q 035836           88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG  167 (380)
Q Consensus        88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  167 (380)
                             ..+|++|++|++++|. +..+| .++.+++|++|++++| .+..+|..   ..+|++|+++++ .+..++ .+
T Consensus       127 -------~~~~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~~L~L~~n-~l~~l~-~~  191 (454)
T 1jl5_A          127 -------SDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNN-QLEELP-EL  191 (454)
T ss_dssp             -------CSCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCC-CC
T ss_pred             -------cCCCCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCC-cCcccCCC---cccccEEECcCC-cCCcCc-cc
Confidence                   2233468888888874 55576 5888888899988885 45556643   358888888884 666666 56


Q ss_pred             ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836          168 LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS  247 (380)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  247 (380)
                      ..+++|+.|++++|.. ..+|..   .++|+.|++++|. ++.++....+++|+.|++++|.... .+.       .+++
T Consensus       192 ~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~l~~-l~~-------~~~~  258 (454)
T 1jl5_A          192 QNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGNNI-LEELPELQNLPFLTTIYADNNLLKT-LPD-------LPPS  258 (454)
T ss_dssp             TTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSS-CCS-------CCTT
T ss_pred             cCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcCCc-CCcccccCCCCCCCEEECCCCcCCc-ccc-------cccc
Confidence            6788889998888643 334432   3578888888884 4466666778889999998875332 211       2357


Q ss_pred             cceeeeecCCCCCccccccccc----------ccCCCCCCCCcceEecccCCCccchhhhhccC-CCCceEeeecCCCCc
Q 035836          248 LRRLAISGCDDDMVSFPLEDKR----------LGTALPLPASLTSLWIEDFPNLERLSSSIVDL-QNLTILQLIDCPKLK  316 (380)
Q Consensus       248 L~~L~l~~~~~~l~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~  316 (380)
                      |+.|++++  +.+..++.....          +.+....+++|++|++++ +.++.++    .+ ++|++|++++ +.++
T Consensus       259 L~~L~l~~--N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~-N~l~~i~----~~~~~L~~L~Ls~-N~l~  330 (454)
T 1jl5_A          259 LEALNVRD--NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS-NEIRSLC----DLPPSLEELNVSN-NKLI  330 (454)
T ss_dssp             CCEEECCS--SCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCS-SCCSEEC----CCCTTCCEEECCS-SCCS
T ss_pred             cCEEECCC--CcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcC-CcCCccc----CCcCcCCEEECCC-Cccc
Confidence            77777776  334444431100          000001223444444444 2333322    22 4777888877 5566


Q ss_pred             ccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeec--CCCCC
Q 035836          317 YFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFD--DDPTE  373 (380)
Q Consensus       317 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  373 (380)
                      .+|.  .+++|++|++++|..- .    ...    ..+.+..+.+.++.+..  .+|..
T Consensus       331 ~lp~--~~~~L~~L~L~~N~l~-~----lp~----~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          331 ELPA--LPPRLERLIASFNHLA-E----VPE----LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             CCCC--CCTTCCEEECCSSCCS-C----CCC----CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccc--cCCcCCEEECCCCccc-c----ccc----hhhhccEEECCCCCCCcCCCChHH
Confidence            6655  2467888888876322 1    111    24566777777766655  45543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=2.3e-18  Score=153.75  Aligned_cols=171  Identities=19%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836           10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL   89 (380)
Q Consensus        10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~   89 (380)
                      .+++++. .++.+|. ..+++|++|+++++. +..++.+ .+..+++        |+.|+++++. +...       +..
T Consensus        11 ~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~-~~~~l~~--------L~~L~L~~n~-l~~~-------~~~   70 (306)
T 2z66_A           11 EIRCNSK-GLTSVPT-GIPSSATRLELESNK-LQSLPHG-VFDKLTQ--------LTKLSLSSNG-LSFK-------GCC   70 (306)
T ss_dssp             EEECCSS-CCSSCCS-CCCTTCCEEECCSSC-CCCCCTT-TTTTCTT--------CSEEECCSSC-CCEE-------EEE
T ss_pred             EEEcCCC-CcccCCC-CCCCCCCEEECCCCc-cCccCHh-Hhhcccc--------CCEEECCCCc-cCcc-------cCc
Confidence            3444442 3444443 234566666666665 5555544 3445555        6666665542 1111       000


Q ss_pred             cccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc--ccccCCCCCcEEEccccccceec-cCC
Q 035836           90 ESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP--SGLHNLRQLQKIEIWECENLVSF-TEG  166 (380)
Q Consensus        90 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l-~~~  166 (380)
                      +. .+..++ +|++|++++|. +..+|..+..+++|++|++++| .+..++  ..+..+++|++|+++++ .+... +..
T Consensus        71 ~~-~~~~~~-~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~  145 (306)
T 2z66_A           71 SQ-SDFGTT-SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI  145 (306)
T ss_dssp             EH-HHHSCS-CCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTT
T ss_pred             cc-cccccc-ccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchhh
Confidence            00 122333 35555555542 3344444555555555555552 222222  13444555555555543 22222 222


Q ss_pred             CccCCCCCEEeccCCCCcc-cccccCCCCCCccEEEeccC
Q 035836          167 GLPCAKLTRLDIYDCERLE-ALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       167 ~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~  205 (380)
                      +..+++|++|++++|.... .+|..+..+++|+.|++++|
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            3334455555554433222 23344444444444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=3.8e-18  Score=152.37  Aligned_cols=223  Identities=18%  Similarity=0.176  Sum_probs=157.4

Q ss_pred             CCCccEEEEecCCChhhhHhh-ccCCCCccEEeecCCCCCCcc---cccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           98 PPSLRSLYVSHCSKLESIAER-LDNNTSLETIDISNCESLKIL---PSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      +++|++|++++|. +..+|.. +..+++|++|++++| .+..+   +..+..+++|++|++++ +.+..++..+..+++|
T Consensus        27 ~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCC
Confidence            3478899998875 5556553 678889999999885 44332   45556688899999988 4667777777778889


Q ss_pred             CEEeccCCCCccccc--ccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836          174 TRLDIYDCERLEALP--KGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR  250 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  250 (380)
                      ++|++++|.. ..++  ..+..+++|+.|++++|......+. ...+++|++|++++|.......+..   +..+++|+.
T Consensus       104 ~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~  179 (306)
T 2z66_A          104 EHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTF  179 (306)
T ss_dssp             CEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCE
T ss_pred             CEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH---HhhCcCCCE
Confidence            9999887543 3333  3677888899999988854433333 3567889999998886443222222   778899999


Q ss_pred             eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCC---CCccc
Q 035836          251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEK---GLPSS  326 (380)
Q Consensus       251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~  326 (380)
                      |++++  +.+..++...      +..+++|++|++++ +.++.++. .+..+++|++|++++| .++.....   .++++
T Consensus       180 L~Ls~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          180 LDLSQ--CQLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS  249 (306)
T ss_dssp             EECTT--SCCCEECTTT------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTT
T ss_pred             EECCC--CCcCCcCHHH------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhcc
Confidence            99998  3555553222      25778999999998 56777665 7788999999999985 56554432   23468


Q ss_pred             ccEEEecCchh
Q 035836          327 LLELWIWDCPL  337 (380)
Q Consensus       327 L~~L~l~~c~~  337 (380)
                      |++|++++|+.
T Consensus       250 L~~L~L~~N~~  260 (306)
T 2z66_A          250 LAFLNLTQNDF  260 (306)
T ss_dssp             CCEEECTTCCE
T ss_pred             CCEEEccCCCe
Confidence            99999988763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=2.8e-17  Score=159.57  Aligned_cols=257  Identities=26%  Similarity=0.305  Sum_probs=186.2

Q ss_pred             CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836            7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP   86 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   86 (380)
                      +++.|+++++ .++.+|... +++|+.|++++|. ++.++.     .+++        |+.|+++++. ++.+       
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~--------L~~L~Ls~N~-l~~l-------   96 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPE--------LRTLEVSGNQ-LTSL-------   96 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTT--------CCEEEECSCC-CSCC-------
T ss_pred             CCcEEEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCC--------CCEEEcCCCc-CCcC-------
Confidence            5889999886 566777633 4899999999997 777664     3455        9999999874 4444       


Q ss_pred             ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC
Q 035836           87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG  166 (380)
Q Consensus        87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  166 (380)
                            +. .++ +|++|++++|. +..+|.   .+++|++|++++| .+..+|..   +++|++|++++| .+..++..
T Consensus        97 ------p~-~l~-~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~  159 (622)
T 3g06_A           97 ------PV-LPP-GLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPAL  159 (622)
T ss_dssp             ------CC-CCT-TCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCCC
T ss_pred             ------CC-CCC-CCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCCc
Confidence                  22 445 69999999884 555655   5788999999984 56667754   488999999984 66666542


Q ss_pred             CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCC
Q 035836          167 GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS  246 (380)
Q Consensus       167 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  246 (380)
                         +++|+.|++++| .++.+|   ..+++|+.|++++|. ++.++.  .+++|+.|++++|.... ++       ..++
T Consensus       160 ---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N~l~~-l~-------~~~~  221 (622)
T 3g06_A          160 ---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPT--LPSELYKLWAYNNRLTS-LP-------ALPS  221 (622)
T ss_dssp             ---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSS-CC-------CCCT
T ss_pred             ---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCC--ccchhhEEECcCCcccc-cC-------CCCC
Confidence               358999999885 445565   346889999999884 344443  35789999999876432 21       1347


Q ss_pred             ccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcc
Q 035836          247 SLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPS  325 (380)
Q Consensus       247 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~  325 (380)
                      +|+.|++++  +.+..++.          .+++|++|++++ +.++.+|.   .+++|++|++++ +.++.+|.. .-.+
T Consensus       222 ~L~~L~Ls~--N~L~~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~~l~~l~  284 (622)
T 3g06_A          222 GLKELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLS  284 (622)
T ss_dssp             TCCEEECCS--SCCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS-SCCCSCCGGGGGSC
T ss_pred             CCCEEEccC--CccCcCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCC-CCCCcCCHHHhhcc
Confidence            899999988  46666662          567899999998 57888775   678899999998 567787752 2246


Q ss_pred             cccEEEecCchhHH
Q 035836          326 SLLELWIWDCPLIE  339 (380)
Q Consensus       326 ~L~~L~l~~c~~l~  339 (380)
                      +|+.|++++|+...
T Consensus       285 ~L~~L~L~~N~l~~  298 (622)
T 3g06_A          285 SETTVNLEGNPLSE  298 (622)
T ss_dssp             TTCEEECCSCCCCH
T ss_pred             ccCEEEecCCCCCC
Confidence            89999999887443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=4.5e-18  Score=150.35  Aligned_cols=193  Identities=18%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836           10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL   89 (380)
Q Consensus        10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~   89 (380)
                      .+++++ ..++.+|. ..+++|++|+++++. +..++.. .+..++.        |+.|+++++. +..+.     +.  
T Consensus        15 ~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~-~~~~~~~--------L~~L~l~~n~-l~~~~-----~~--   74 (285)
T 1ozn_A           15 TTSCPQ-QGLQAVPV-GIPAASQRIFLHGNR-ISHVPAA-SFRACRN--------LTILWLHSNV-LARID-----AA--   74 (285)
T ss_dssp             EEECCS-SCCSSCCT-TCCTTCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCEEC-----TT--
T ss_pred             EEEcCc-CCcccCCc-CCCCCceEEEeeCCc-CCccCHH-HcccCCC--------CCEEECCCCc-cceeC-----Hh--
Confidence            444444 24455543 335677777777766 6665544 4455555        6777766642 22220     00  


Q ss_pred             cccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-C
Q 035836           90 ESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-G  167 (380)
Q Consensus        90 ~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~  167 (380)
                         .+..++ +|++|++++|..+..+ +..+..+++|++|++++|......+..+..+++|++|++++ +.+..++.. +
T Consensus        75 ---~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~  149 (285)
T 1ozn_A           75 ---AFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTF  149 (285)
T ss_dssp             ---TTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             ---hcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHh
Confidence               234445 4666666666434433 45556666666666666433333334455566666666665 344444433 3


Q ss_pred             ccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCC
Q 035836          168 LPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGN  228 (380)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  228 (380)
                      ..+++|+.|++++|.. +.++ ..+..+++|+.|++++|......+ ....+++|+.|++++|
T Consensus       150 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             TTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCccEEECCCCcc-cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            4455666666665432 2333 235555666666666553322212 1233444555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.9e-19  Score=161.66  Aligned_cols=242  Identities=13%  Similarity=0.165  Sum_probs=151.2

Q ss_pred             CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      .+++|++|+++++. +..++.. .+..++.        |+.|+++++......             ++..++ +|++|++
T Consensus        32 ~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~n~l~~~~-------------~~~~l~-~L~~L~L   87 (317)
T 3o53_A           32 SAWNVKELDLSGNP-LSQISAA-DLAPFTK--------LELLNLSSNVLYETL-------------DLESLS-TLRTLDL   87 (317)
T ss_dssp             TGGGCSEEECTTSC-CCCCCHH-HHTTCTT--------CCEEECTTSCCEEEE-------------EETTCT-TCCEEEC
T ss_pred             cCCCCCEEECcCCc-cCcCCHH-HhhCCCc--------CCEEECCCCcCCcch-------------hhhhcC-CCCEEEC
Confidence            45678888888876 6666544 4666666        888888776422211             345566 5888888


Q ss_pred             ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcc
Q 035836          107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLE  185 (380)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~  185 (380)
                      ++|. +..++    ..++|++|++++| .+..++..  .+++|+.|++++ +.+..++. .+..+++|+.|++++|....
T Consensus        88 s~n~-l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNY-VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSE-EEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             cCCc-ccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            8774 44333    3478888888874 44444422  367788888877 35555543 44556778888888765544


Q ss_pred             cccccC-CCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836          186 ALPKGL-HNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP  264 (380)
Q Consensus       186 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~  264 (380)
                      ..+..+ ..+++|+.|++++|. ++.++....+++|++|++++|........     +..+++|+.|++++  +.+..++
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~L~~--N~l~~l~  230 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN--NKLVLIE  230 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT--SCCCEEC
T ss_pred             ccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhh-----hcccCcccEEECcC--Ccccchh
Confidence            444444 356778888888774 33344444567777777777654332221     44667777777776  3555665


Q ss_pred             cccccccCCCCCCCCcceEecccCCCcc--chhhhhccCCCCceEeeecCCCCcc
Q 035836          265 LEDKRLGTALPLPASLTSLWIEDFPNLE--RLSSSIVDLQNLTILQLIDCPKLKY  317 (380)
Q Consensus       265 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~  317 (380)
                      ...       ..+++|++|+++++ .+.  .++..+..+++|+.|++.+++.++.
T Consensus       231 ~~~-------~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          231 KAL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             TTC-------CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             hHh-------hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCchhccC
Confidence            544       46677777777773 443  4455666777777777776555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=2.9e-17  Score=145.13  Aligned_cols=201  Identities=19%  Similarity=0.229  Sum_probs=140.9

Q ss_pred             CCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec-cCCCccCCCCCE
Q 035836           98 PPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTR  175 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~  175 (380)
                      |++|++|++++|. +..+ +..+..+++|++|++++|......+..+..+++|++|+++++..+..+ +..+..+++|++
T Consensus        31 ~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            4479999999885 4444 456788899999999885433333566778899999999886547766 445666888999


Q ss_pred             EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836          176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS  254 (380)
Q Consensus       176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  254 (380)
                      |++++|......+..+..+++|+.|++++|......+. ...+++|+.|++++|... ......   +..+++|+.|+++
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~---~~~l~~L~~L~l~  185 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA---FRGLHSLDRLLLH  185 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTT---TTTCTTCCEEECC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHH---hcCccccCEEECC
Confidence            99988765555566778888999999988754332222 356788888888887533 333222   6677888888888


Q ss_pred             cCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836          255 GCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       255 ~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  313 (380)
                      +  +.+..+ +...       ..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus       186 ~--n~l~~~~~~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          186 Q--NRVAHVHPHAF-------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             S--SCCCEECTTTT-------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             C--CcccccCHhHc-------cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence            7  344444 3333       4677888888888 46666664 57778888888888753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=4.3e-17  Score=158.22  Aligned_cols=259  Identities=25%  Similarity=0.257  Sum_probs=196.5

Q ss_pred             CCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEec
Q 035836           29 PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH  108 (380)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~  108 (380)
                      .+++.|+++++. ++.+|.. ..   ++        |+.|+++++. ++.+             +. .++ +|++|++++
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~-l~---~~--------L~~L~L~~N~-l~~l-------------p~-~l~-~L~~L~Ls~   90 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDC-LP---AH--------ITTLVIPDNN-LTSL-------------PA-LPP-ELRTLEVSG   90 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSC-CC---TT--------CSEEEECSCC-CSCC-------------CC-CCT-TCCEEEECS
T ss_pred             CCCcEEEecCCC-cCccChh-hC---CC--------CcEEEecCCC-CCCC-------------CC-cCC-CCCEEEcCC
Confidence            468999999988 8888865 22   55        9999999874 5444             22 334 799999999


Q ss_pred             CCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc
Q 035836          109 CSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP  188 (380)
Q Consensus       109 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~  188 (380)
                      |. +..+|.   .+++|++|++++ +.+..+|.   .+++|+.|++++ +.+..+|..   +++|++|++++| .+..+|
T Consensus        91 N~-l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~  157 (622)
T 3g06_A           91 NQ-LTSLPV---LPPGLLELSIFS-NPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQELSVSDN-QLASLP  157 (622)
T ss_dssp             CC-CSCCCC---CCTTCCEEEECS-CCCCCCCC---CCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred             Cc-CCcCCC---CCCCCCEEECcC-CcCCCCCC---CCCCcCEEECCC-CCCCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence            85 666766   679999999998 56666765   578999999998 467777764   379999999987 445555


Q ss_pred             ccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccc
Q 035836          189 KGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK  268 (380)
Q Consensus       189 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~  268 (380)
                      .   .+++|+.|++++|. ++.++  ..+++|+.|++++|.... ++       ..+++|+.|++++  +.+..++.   
T Consensus       158 ~---~~~~L~~L~L~~N~-l~~l~--~~~~~L~~L~Ls~N~l~~-l~-------~~~~~L~~L~L~~--N~l~~l~~---  218 (622)
T 3g06_A          158 A---LPSELCKLWAYNNQ-LTSLP--MLPSGLQELSVSDNQLAS-LP-------TLPSELYKLWAYN--NRLTSLPA---  218 (622)
T ss_dssp             C---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSCCSC-CC-------CCCTTCCEEECCS--SCCSSCCC---
T ss_pred             C---ccCCCCEEECCCCC-CCCCc--ccCCCCcEEECCCCCCCC-CC-------CccchhhEEECcC--CcccccCC---
Confidence            4   35689999999884 44455  567899999999986432 22       1357899999998  46666664   


Q ss_pred             cccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCC
Q 035836          269 RLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQ  348 (380)
Q Consensus       269 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  348 (380)
                             .+++|++|++++ +.++.+|   ..+++|++|++++ +.++.+|.  .+++|+.|++++|..- .     ...
T Consensus       219 -------~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~-N~L~~lp~--~~~~L~~L~Ls~N~L~-~-----lp~  278 (622)
T 3g06_A          219 -------LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSG-NRLTSLPM--LPSGLLSLSVYRNQLT-R-----LPE  278 (622)
T ss_dssp             -------CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSCCC-S-----CCG
T ss_pred             -------CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCC-CCCCcCCc--ccccCcEEeCCCCCCC-c-----CCH
Confidence                   458899999998 5888877   5568999999999 57888887  6779999999998433 1     223


Q ss_pred             CCccccCcCeeEECceeeec
Q 035836          349 YWNLLTHIPYVSIDYKWVFD  368 (380)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~  368 (380)
                      .+..++++..+.+.++.+..
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCH
T ss_pred             HHhhccccCEEEecCCCCCC
Confidence            35567788888888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=6.5e-18  Score=151.64  Aligned_cols=214  Identities=13%  Similarity=0.082  Sum_probs=159.1

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++++|......|..+..+++|++|++++|. +...++ +..+++|++|+++++ .+..++.    .++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcCEEECC
Confidence            69999999986444556788899999999999854 443443 778999999999984 5666553    3689999999


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD  258 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  258 (380)
                      +|......+.   .+++|+.|++++|......+ ....+++|+.|++++|.........+   +..+++|++|++++  +
T Consensus       108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~--N  179 (317)
T 3o53_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQY--N  179 (317)
T ss_dssp             SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTT--S
T ss_pred             CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCC--C
Confidence            8654433322   36789999999885443333 33567899999999986544333222   45678999999998  4


Q ss_pred             CCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836          259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL  337 (380)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~  337 (380)
                      .+..++...        .+++|++|++++ +.++.++..+..+++|++|++++ +.++.+|.. ...++|+.|++++|+.
T Consensus       180 ~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          180 FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             cCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCc
Confidence            566665433        578999999998 58888877888999999999998 578888763 2356899999998875


Q ss_pred             H
Q 035836          338 I  338 (380)
Q Consensus       338 l  338 (380)
                      .
T Consensus       250 ~  250 (317)
T 3o53_A          250 H  250 (317)
T ss_dssp             B
T ss_pred             c
Confidence            5

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=6e-18  Score=154.22  Aligned_cols=270  Identities=17%  Similarity=0.141  Sum_probs=195.5

Q ss_pred             CCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCC
Q 035836            6 SSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNEL   85 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~   85 (380)
                      +.....++++ ..++.+|. ..+++|++|+++++. +..++.. .+..+++        |+.|+++++. +..+.     
T Consensus        31 ~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~~-----   92 (353)
T 2z80_A           31 DRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNNR-ITYISNS-DLQRCVN--------LQALVLTSNG-INTIE-----   92 (353)
T ss_dssp             CTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTSC-CCEECTT-TTTTCTT--------CCEEECTTSC-CCEEC-----
T ss_pred             CCCeEeeCCC-CCcccccc-cccccCcEEECCCCc-CcccCHH-HhccCCC--------CCEEECCCCc-cCccC-----
Confidence            3334455544 35666765 345799999999998 8888765 5677788        9999999873 43331     


Q ss_pred             CccccccccCCCCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc--cccCCCCCcEEEcccccccee
Q 035836           86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS--GLHNLRQLQKIEIWECENLVS  162 (380)
Q Consensus        86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~  162 (380)
                      ++     .+..++ +|++|++++|. +..++. .+..+++|++|++++| .+..+|.  .+..+++|++|+++++..+..
T Consensus        93 ~~-----~~~~l~-~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A           93 ED-----SFSSLG-SLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             TT-----TTTTCT-TCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             Hh-----hcCCCC-CCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc
Confidence            11     355667 69999999985 555554 4889999999999994 5666765  577899999999999766777


Q ss_pred             ccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCC--CCCCCceEEEecCCCCcchhhhhhc
Q 035836          163 FTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWG  239 (380)
Q Consensus       163 l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~  239 (380)
                      ++. .+..+++|++|++++|......|..+..+++|+.|++++|.. +.++..  ..+++|+.|++++|.......... 
T Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-  242 (353)
T 2z80_A          165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-  242 (353)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccc-
Confidence            654 566788999999999876666678899999999999999853 333322  347899999999986433221111 


Q ss_pred             cccCCCCccceeeeecCCCCCc-----ccccccccccCCCCCCCCcceEecccCCCccchhhh-hccCCCCceEeeecCC
Q 035836          240 RGFHRFSSLRRLAISGCDDDMV-----SFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSS-IVDLQNLTILQLIDCP  313 (380)
Q Consensus       240 ~~~~~~~~L~~L~l~~~~~~l~-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~  313 (380)
                      ......+.++.+++.+ + .+.     .++...       ..+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus       243 ~~~~~~~~l~~l~L~~-~-~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          243 STGETNSLIKKFTFRN-V-KITDESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ----CCCCCCEEEEES-C-BCCHHHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccchhhcccccc-c-cccCcchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            0123456788888887 2 332     234333       4778999999999 588888885 5899999999999964

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-17  Score=157.84  Aligned_cols=215  Identities=13%  Similarity=0.077  Sum_probs=160.9

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++++|......|..+..+++|++|++++|. +...++ +..+++|++|+++++ .+..++.    .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence            69999999986444556788899999999999854 443333 778999999999984 6666653    3689999999


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD  258 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  258 (380)
                      +|......+.   .+++|+.|++++|......+ ....+++|+.|++++|......+..+   ...+++|+.|++++  +
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~--N  179 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQY--N  179 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTT--S
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCC--C
Confidence            8755443332   46789999999886544333 33567899999999987554333322   34689999999998  4


Q ss_pred             CCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC-CCcccccEEEecCchh
Q 035836          259 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK-GLPSSLLELWIWDCPL  337 (380)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~  337 (380)
                      .+..++...        .+++|++|++++ +.++.+|..+..+++|+.|++++ +.++.+|.. ...++|+.|++++|+.
T Consensus       180 ~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          180 FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence            566665433        688999999998 68888887888999999999998 678788763 2357899999998876


Q ss_pred             HH
Q 035836          338 IE  339 (380)
Q Consensus       338 l~  339 (380)
                      .+
T Consensus       250 ~c  251 (487)
T 3oja_A          250 HC  251 (487)
T ss_dssp             CH
T ss_pred             cC
Confidence            63

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=2.1e-20  Score=176.74  Aligned_cols=313  Identities=20%  Similarity=0.220  Sum_probs=145.2

Q ss_pred             CCCCccEEEEecCCCCc----cccC-CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCccc
Q 035836            4 TNSSLEILEIWVCHSLT----YIAG-VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTC   78 (380)
Q Consensus         4 ~~~~L~~L~l~~~~~~~----~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~   78 (380)
                      .+++|++|++++|..-.    .++. ...+++|++|+++++. +.+.........+...    .++|++|++++|. +..
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~----~~~L~~L~L~~n~-i~~   99 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTP----SCKIQKLSLQNCC-LTG   99 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCST----TCCCCEEECTTSC-CBG
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhC----CCceeEEEccCCC-CCH
Confidence            45666666666664211    1111 2335666666666665 4432222122223200    0016666666653 221


Q ss_pred             ccccCCCCccccccccCCCCCCccEEEEecCCChhhhHh----h-ccCCCCccEEeecCCCCCC----cccccccCCCCC
Q 035836           79 IFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAE----R-LDNNTSLETIDISNCESLK----ILPSGLHNLRQL  149 (380)
Q Consensus        79 ~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~----~-~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L  149 (380)
                      ..     ...++. .+..++ +|++|++++|......+.    . ....++|++|++++|....    .++..+..+++|
T Consensus       100 ~~-----~~~l~~-~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  172 (461)
T 1z7x_W          100 AG-----CGVLSS-TLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF  172 (461)
T ss_dssp             GG-----HHHHHH-HTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTC
T ss_pred             HH-----HHHHHH-HHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCC
Confidence            00     001111 234455 477777776653222121    1 1224567777777653322    123334456677


Q ss_pred             cEEEccccccceecc-CCCc-----cCCCCCEEeccCCCCcc----cccccCCCCCCccEEEeccCCCCCC----C-C-C
Q 035836          150 QKIEIWECENLVSFT-EGGL-----PCAKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKGVELPS----L-E-E  213 (380)
Q Consensus       150 ~~L~l~~~~~l~~l~-~~~~-----~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~-~-~  213 (380)
                      ++|+++++. +.... ..+.     ..++|++|++++|....    .++..+..+++|+.|++++|.....    + + .
T Consensus       173 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~  251 (461)
T 1z7x_W          173 KELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL  251 (461)
T ss_dssp             CEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             CEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence            777777643 32211 1111     13467777777664322    1344455667777777777632111    0 1 1


Q ss_pred             CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccc-ccccccCCCCCCCCcceEecccCCCcc
Q 035836          214 DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPL-EDKRLGTALPLPASLTSLWIEDFPNLE  292 (380)
Q Consensus       214 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~  292 (380)
                      ...+++|++|++++|...........+.+..+++|++|++++ + .+..... ....  ......++|++|++++| .++
T Consensus       252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n-~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n-~l~  326 (461)
T 1z7x_W          252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-N-ELGDEGARLLCE--TLLEPGCQLESLWVKSC-SFT  326 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-C-CCHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCB
T ss_pred             hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-C-CCchHHHHHHHH--HhccCCccceeeEcCCC-CCc
Confidence            123567777777777433221100111144567777777776 2 3322111 0000  00012246777777764 333


Q ss_pred             c-----hhhhhccCCCCceEeeecCCCCcccCCCC-------CcccccEEEecCch
Q 035836          293 R-----LSSSIVDLQNLTILQLIDCPKLKYFPEKG-------LPSSLLELWIWDCP  336 (380)
Q Consensus       293 ~-----l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------~~~~L~~L~l~~c~  336 (380)
                      .     ++..+..+++|++|++++| .+++.....       ..++|++|++++|.
T Consensus       327 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          327 AACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             GGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             hHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            2     3445556677777777764 444321110       02366666666664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=3.3e-19  Score=173.84  Aligned_cols=301  Identities=18%  Similarity=0.126  Sum_probs=149.6

Q ss_pred             CCCCCccEEEEecCCCCccc---cC-C------------CCCCCCceEeecCCcCccccccccceecC--CCCccccccc
Q 035836            3 DTNSSLEILEIWVCHSLTYI---AG-V------------QLPPSLKQLRISDCDNIRTLTVEEGIQSS--SSSRRYTSYL   64 (380)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~~---~~-~------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~   64 (380)
                      .++++|++|++++|..+...   +. .            ..+++|++|++++|. +...... .+...  ..        
T Consensus        70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~-~l~~~~~~~--------  139 (592)
T 3ogk_B           70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLD-RLAKARADD--------  139 (592)
T ss_dssp             HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHH-HHHHHHGGG--------
T ss_pred             HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHH-HHHHhcccc--------
Confidence            46788999999887654422   10 1            147889999998885 5433222 11111  22        


Q ss_pred             cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCC----
Q 035836           65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESL----  136 (380)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~----  136 (380)
                      |++|++++|..+...        .+.. ....+| +|++|++++|....    .++.....+++|++|+++++...    
T Consensus       140 L~~L~L~~~~~~~~~--------~l~~-~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~  209 (592)
T 3ogk_B          140 LETLKLDKCSGFTTD--------GLLS-IVTHCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP  209 (592)
T ss_dssp             CCEEEEESCEEEEHH--------HHHH-HHHHCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred             CcEEECcCCCCcCHH--------HHHH-HHhhCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence            777777776532211        1111 012344 46666666663211    13333445566666666653322    


Q ss_pred             CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCC--------------------------Cccccccc
Q 035836          137 KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCE--------------------------RLEALPKG  190 (380)
Q Consensus       137 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~--------------------------~~~~~~~~  190 (380)
                      ..++..+.++++|+.|++++| .+..++..+..+++|+.++++...                          ....+|..
T Consensus       210 ~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~  288 (592)
T 3ogk_B          210 KDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL  288 (592)
T ss_dssp             HHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred             HHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence            122333344566666666653 233333333334445555444211                          22233333


Q ss_pred             CCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecC---------CC
Q 035836          191 LHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGC---------DD  258 (380)
Q Consensus       191 l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~  258 (380)
                      +..+++|+.|++++|. ++...   ....+++|+.|++.++  +........  +..+++|++|++++.         |.
T Consensus       289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~--~~~~~~L~~L~L~~g~~~~~~~~~~~  363 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEG  363 (592)
T ss_dssp             GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH--HHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred             HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHH--HHhCCCCCEEEeecCccccccccccC
Confidence            4445556666666554 22111   1234556666666522  111111111  344566666666620         12


Q ss_pred             CCcc--cccccccccCCCCCCCCcceEecccCCCccchh-hhh-ccCCCCceEeeec---CCCCcccCCC-C------Cc
Q 035836          259 DMVS--FPLEDKRLGTALPLPASLTSLWIEDFPNLERLS-SSI-VDLQNLTILQLID---CPKLKYFPEK-G------LP  324 (380)
Q Consensus       259 ~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~-~~~~~L~~L~l~~---c~~l~~~~~~-~------~~  324 (380)
                      .+..  +....       ..+++|++|+++ |+.++... ..+ .++++|++|++++   |+.++..|.. +      -.
T Consensus       364 ~~~~~~~~~l~-------~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~  435 (592)
T 3ogk_B          364 LVSQRGLIALA-------QGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC  435 (592)
T ss_dssp             CCCHHHHHHHH-------HHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred             ccCHHHHHHHH-------hhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence            2221  11111       246778888884 35655432 233 3488889998873   5677765431 1      14


Q ss_pred             ccccEEEecCchh
Q 035836          325 SSLLELWIWDCPL  337 (380)
Q Consensus       325 ~~L~~L~l~~c~~  337 (380)
                      ++|++|++++|..
T Consensus       436 ~~L~~L~L~~~~~  448 (592)
T 3ogk_B          436 KKLRRFAFYLRQG  448 (592)
T ss_dssp             TTCCEEEEECCGG
T ss_pred             CCCCEEEEecCCC
Confidence            6899999987763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=3.7e-17  Score=140.56  Aligned_cols=204  Identities=21%  Similarity=0.248  Sum_probs=130.7

Q ss_pred             CCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccC-CCccCCCC
Q 035836           97 LPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTE-GGLPCAKL  173 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  173 (380)
                      +|.+|++|++++|. +..++. .+..+++|++|++++|..+..++. .+..+++|++|++++|+.++.++. .+..+++|
T Consensus        29 ~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           29 LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            45578888888875 554444 677888888888888554666654 466788888888877556666654 33456677


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc-eee
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR-RLA  252 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~  252 (380)
                      +.|++++|. ++.+|. +..+++|+                    .|+.|++++|..+.......   +..+++|+ .|+
T Consensus       108 ~~L~l~~n~-l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~  162 (239)
T 2xwt_C          108 KFLGIFNTG-LKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNA---FQGLCNETLTLK  162 (239)
T ss_dssp             CEEEEEEEC-CCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred             CEEeCCCCC-Cccccc-cccccccc--------------------cccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence            777777653 333443 44444444                    11245555442333333222   56677788 888


Q ss_pred             eecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccC-CCCceEeeecCCCCcccCCCCCcccccEE
Q 035836          253 ISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDL-QNLTILQLIDCPKLKYFPEKGLPSSLLEL  330 (380)
Q Consensus       253 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L  330 (380)
                      +++  +.+..++...      +.. ++|++|+++++..++.++. .+..+ ++|++|++++ +.++.+|.. ..++|+.|
T Consensus       163 l~~--n~l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L  231 (239)
T 2xwt_C          163 LYN--NGFTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKEL  231 (239)
T ss_dssp             CCS--CCCCEECTTT------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEE
T ss_pred             cCC--CCCcccCHhh------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCcee
Confidence            876  4555666533      123 6788888888545777755 67777 8888888888 677777775 45588888


Q ss_pred             EecCchh
Q 035836          331 WIWDCPL  337 (380)
Q Consensus       331 ~l~~c~~  337 (380)
                      ++.++..
T Consensus       232 ~l~~~~~  238 (239)
T 2xwt_C          232 IARNTWT  238 (239)
T ss_dssp             ECTTC--
T ss_pred             eccCccC
Confidence            8887654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=9.2e-18  Score=159.35  Aligned_cols=235  Identities=13%  Similarity=0.155  Sum_probs=167.2

Q ss_pred             CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      .+++|+.|+++++. +..++.. .+..++.        |+.|+++++......             ++..++ +|++|++
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~--------L~~L~Ls~N~l~~~~-------------~l~~l~-~L~~L~L   87 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAA-DLAPFTK--------LELLNLSSNVLYETL-------------DLESLS-TLRTLDL   87 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGG-GGTTCTT--------CCEEECTTSCCEEEE-------------ECTTCT-TCCEEEC
T ss_pred             cCCCccEEEeeCCc-CCCCCHH-HHhCCCC--------CCEEEeeCCCCCCCc-------------ccccCC-CCCEEEe
Confidence            35689999999887 7776655 5677777        999999887532222             456667 6999999


Q ss_pred             ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec-cCCCccCCCCCEEeccCCCCcc
Q 035836          107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTRLDIYDCERLE  185 (380)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~  185 (380)
                      ++|. +..++.    .++|++|++++| .+..++..  .+++|+.|+++++ .+..+ +..+..+++|+.|++++|....
T Consensus        88 s~N~-l~~l~~----~~~L~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A           88 NNNY-VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CSSE-EEEEEE----CTTCCEEECCSS-CCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             cCCc-CCCCCC----CCCcCEEECcCC-cCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence            9884 554443    478999999885 44444432  4678999999884 55554 4455667889999999877666


Q ss_pred             cccccCC-CCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836          186 ALPKGLH-NLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP  264 (380)
Q Consensus       186 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~  264 (380)
                      ..|..+. .+++|+.|++++|. ++..+....+++|+.|++++|......+.     +..+++|+.|++++  +.+..++
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~--N~l~~lp  230 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN--NKLVLIE  230 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT--SCCCEEC
T ss_pred             cChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEecC--CcCcccc
Confidence            5666664 68899999999885 34445555688899999998865433222     55778899999988  4666676


Q ss_pred             cccccccCCCCCCCCcceEecccCCCcc--chhhhhccCCCCceEeee
Q 035836          265 LEDKRLGTALPLPASLTSLWIEDFPNLE--RLSSSIVDLQNLTILQLI  310 (380)
Q Consensus       265 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~  310 (380)
                      ...       ..+++|+.|+++++ .+.  .+|..+..++.|+.+++.
T Consensus       231 ~~l-------~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          231 KAL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTC-------CCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhh-------ccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEecc
Confidence            654       56788999999884 444  556677778888877775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=1.5e-18  Score=155.36  Aligned_cols=200  Identities=16%  Similarity=0.119  Sum_probs=123.0

Q ss_pred             CCCCccEEeecCCCCCCcccccc--cCCCCCcEEEccccccceeccCCCccC-----CCCCEEeccCCCCcccccccCCC
Q 035836          121 NNTSLETIDISNCESLKILPSGL--HNLRQLQKIEIWECENLVSFTEGGLPC-----AKLTRLDIYDCERLEALPKGLHN  193 (380)
Q Consensus       121 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~  193 (380)
                      .+++|++|++++|.....+|..+  ..+++|++|++++ +.+..+|..+..+     ++|++|++++|......+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            56777777777755544566554  6677777777777 3455554433333     67777777776554444466777


Q ss_pred             CCCccEEEeccCCCCCC---CCCC--CCCCCceEEEecCCCCcc--hhhhhhccccCCCCccceeeeecCCCCCcccc-c
Q 035836          194 LTSLQELTIGKGVELPS---LEED--GLPTNLHSLEIDGNMEIW--KSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP-L  265 (380)
Q Consensus       194 ~~~L~~L~l~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~-~  265 (380)
                      +++|+.|++++|.....   .+..  ..+++|++|++++|....  ......   +..+++|+.|++++  +.+.... .
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~--N~l~~~~~~  246 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL---AAARVQLQGLDLSH--NSLRDAAGA  246 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH---HHTTCCCSEEECTT--SCCCSSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH---HhcCCCCCEEECCC--CcCCcccch
Confidence            77777777777753322   1111  456777777777775432  111111   44667888888877  3344322 1


Q ss_pred             ccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCch
Q 035836          266 EDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCP  336 (380)
Q Consensus       266 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~  336 (380)
                      ..      +..+++|++|++++ +.++.+|..+.  ++|++|++++ +.++.+|.-...++|++|++++++
T Consensus       247 ~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          247 PS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             hh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence            11      13457788888887 46677766444  7788888877 567776653335677777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=1.2e-16  Score=137.26  Aligned_cols=160  Identities=21%  Similarity=0.262  Sum_probs=82.7

Q ss_pred             CCCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           96 NLPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      .++ +|++|++++|..++.++. .+..+++|++|++++|+.+..++. .+..+++|++|++++ +.+..+|. +..+++|
T Consensus        53 ~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L  129 (239)
T 2xwt_C           53 NLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN-TGLKMFPD-LTKVYST  129 (239)
T ss_dssp             TCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE-ECCCSCCC-CTTCCBC
T ss_pred             CCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC-CCCccccc-ccccccc
Confidence            344 466666665533443332 455566666666665344444442 345566666666666 34455554 4445555


Q ss_pred             C---EEeccCCCCcccccc-cCCCCCCcc-EEEeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccccCCC-C
Q 035836          174 T---RLDIYDCERLEALPK-GLHNLTSLQ-ELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF-S  246 (380)
Q Consensus       174 ~---~L~l~~~~~~~~~~~-~l~~~~~L~-~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~  246 (380)
                      +   .|++++|..+..++. .+..+++|+ .|++++|.. +.++.. ...++|+.|++++|..++.++...   +..+ +
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~---~~~l~~  205 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA---FGGVYS  205 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECTTCTTCCEECTTT---TTTCSB
T ss_pred             ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCHHH---hhcccc
Confidence            5   777776644554443 356667777 777766532 233221 122456666666554333332222   4455 5


Q ss_pred             ccceeeeecCCCCCcccc
Q 035836          247 SLRRLAISGCDDDMVSFP  264 (380)
Q Consensus       247 ~L~~L~l~~~~~~l~~~~  264 (380)
                      +|+.|++++  +.+..++
T Consensus       206 ~L~~L~l~~--N~l~~l~  221 (239)
T 2xwt_C          206 GPSLLDVSQ--TSVTALP  221 (239)
T ss_dssp             CCSEEECTT--CCCCCCC
T ss_pred             CCcEEECCC--CccccCC
Confidence            666666655  3444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.70  E-value=1.9e-18  Score=168.54  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=37.3

Q ss_pred             CCCcceEecccCCCccch--hhhhccCCCCceEeeecCCCCcccCC---CCCcccccEEEecCchhHH
Q 035836          277 PASLTSLWIEDFPNLERL--SSSIVDLQNLTILQLIDCPKLKYFPE---KGLPSSLLELWIWDCPLIE  339 (380)
Q Consensus       277 ~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l~  339 (380)
                      +++|++|++++|. ++..  .....++++|++|++++|+. +....   ....++|++|++++|+...
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            5667777777643 4322  11336688888888888764 33211   1124688889999887633

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=4.4e-18  Score=165.94  Aligned_cols=59  Identities=20%  Similarity=0.118  Sum_probs=34.2

Q ss_pred             CCCCcceEecccCCCccch-hhhh-ccCCCCceEeeecCCCCcccCCCC---CcccccEEEecCchh
Q 035836          276 LPASLTSLWIEDFPNLERL-SSSI-VDLQNLTILQLIDCPKLKYFPEKG---LPSSLLELWIWDCPL  337 (380)
Q Consensus       276 ~~~~L~~L~l~~~~~l~~l-~~~~-~~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~~  337 (380)
                      .+++|++|++++  .+... ...+ ..+++|++|++++|. +++.....   -.++|++|++++|+.
T Consensus       430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            445677777754  33322 1122 237778888887754 43321111   146899999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=1.7e-15  Score=133.88  Aligned_cols=197  Identities=24%  Similarity=0.257  Sum_probs=135.8

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS   81 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   81 (380)
                      ++.+++++.+++.++ .++.+|.. .+++++.|+++++. +..++.. .+..++.        |+.|+++++. +..+  
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~ip~~-~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~--------L~~L~L~~n~-l~~~--   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTALPPD-LPKDTTILHLSENL-LYTFSLA-TLMPYTR--------LTQLNLDRAE-LTKL--   70 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSCCSC-CCTTCCEEECTTSC-CSEEEGG-GGTTCTT--------CCEEECTTSC-CCEE--
T ss_pred             ccccCCccEEECCCC-CCCcCCCC-CCCCCCEEEcCCCc-CCccCHH-HhhcCCC--------CCEEECCCCc-cCcc--
Confidence            356788999999874 66667653 35789999999887 7766655 5667777        8899888764 3333  


Q ss_pred             cCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccc
Q 035836           82 KNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENL  160 (380)
Q Consensus        82 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l  160 (380)
                          +      ....++ +|++|++++|. +..+|..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+
T Consensus        71 ----~------~~~~l~-~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l  136 (290)
T 1p9a_G           71 ----Q------VDGTLP-VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NEL  136 (290)
T ss_dssp             ----E------CCSCCT-TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCC
T ss_pred             ----c------CCCCCC-cCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCC
Confidence                1      224555 68888888874 6677777778888888888884 454554 4467788888888887 466


Q ss_pred             eeccCCC-ccCCCCCEEeccCCCCcccccc-cCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCC
Q 035836          161 VSFTEGG-LPCAKLTRLDIYDCERLEALPK-GLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNM  229 (380)
Q Consensus       161 ~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  229 (380)
                      ..++... ..+++|+.|++++|. ++.+|. .+..+++|+.|++++|.. +.+| .......|+.+++++|+
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCC
T ss_pred             CccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCC
Confidence            6666654 457788888888764 344543 456778888888887743 3333 23445567777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=5.8e-17  Score=157.98  Aligned_cols=227  Identities=13%  Similarity=0.044  Sum_probs=126.7

Q ss_pred             CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCc--ccccccCCCCCcEEEccccccceeccCCCccCCC
Q 035836           95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKI--LPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAK  172 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  172 (380)
                      ..++ +|+.|.+.++ ....+|..+..+++|++|++++|. +..  ++..+..+++|++|++.++-.-..++.....+++
T Consensus       267 ~~~~-~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          267 VFPR-KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCT-TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             hccc-cccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            3444 6888888775 345666777778888888888866 322  2223466788888888742211122222234677


Q ss_pred             CCEEeccC----------CCCccc--ccccCCCCCCccEEEeccCCCCCCCC--CC-CCCCCceEEEecC---CCCcchh
Q 035836          173 LTRLDIYD----------CERLEA--LPKGLHNLTSLQELTIGKGVELPSLE--ED-GLPTNLHSLEIDG---NMEIWKS  234 (380)
Q Consensus       173 L~~L~l~~----------~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~--~~-~~~~~L~~L~l~~---~~~~~~~  234 (380)
                      |++|++.+          |..++.  ++.....+++|+.|.+..+ .++...  .. ..+++|+.|++.+   +..++..
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            88888873          444432  2222344677888887433 222211  11 2366788888763   3344432


Q ss_pred             h----hhhccccCCCCccceeeeecCCCC-Cccc-ccccccccCCCCCCCCcceEecccCCCccc--hhhhhccCCCCce
Q 035836          235 T----IEWGRGFHRFSSLRRLAISGCDDD-MVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLER--LSSSIVDLQNLTI  306 (380)
Q Consensus       235 ~----~~~~~~~~~~~~L~~L~l~~~~~~-l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~  306 (380)
                      +    ....  +.++++|+.|++++ |.. +... ....      ...+++|++|++++| .++.  ++..+.++++|++
T Consensus       423 p~~~~~~~~--~~~~~~L~~L~L~~-~~~~l~~~~~~~~------~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          423 PLDNGVRSL--LIGCKKLRRFAFYL-RQGGLTDLGLSYI------GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             CCHHHHHHH--HHHCTTCCEEEEEC-CGGGCCHHHHHHH------HHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCE
T ss_pred             hHHHHHHHH--HHhCCCCCEEEEec-CCCCccHHHHHHH------HHhCccceEeeccCC-CCCHHHHHHHHhcCcccCe
Confidence            1    1111  44577888888876 432 2111 1111      024567888888774 4543  3445667788888


Q ss_pred             EeeecCCCCccc--CC-CCCcccccEEEecCch
Q 035836          307 LQLIDCPKLKYF--PE-KGLPSSLLELWIWDCP  336 (380)
Q Consensus       307 L~l~~c~~l~~~--~~-~~~~~~L~~L~l~~c~  336 (380)
                      |++++|+ ++..  +. ....++|++|++++|.
T Consensus       493 L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          493 LEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             EEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             eeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            8888876 4331  11 0124578888888876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=3e-15  Score=132.30  Aligned_cols=191  Identities=18%  Similarity=0.137  Sum_probs=120.6

Q ss_pred             cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccccc
Q 035836           65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLH  144 (380)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  144 (380)
                      +++++++++ .++.+             + ..+++++++|++++|......+..+..+++|++|++++ +.+..++.. .
T Consensus        12 l~~l~~~~~-~l~~i-------------p-~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~   74 (290)
T 1p9a_G           12 HLEVNCDKR-NLTAL-------------P-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-G   74 (290)
T ss_dssp             CCEEECTTS-CCSSC-------------C-SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-S
T ss_pred             ccEEECCCC-CCCcC-------------C-CCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-C
Confidence            777777663 34433             2 12234688888888864434456778888888888888 445555543 5


Q ss_pred             CCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceE
Q 035836          145 NLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHS  222 (380)
Q Consensus       145 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~  222 (380)
                      .+++|++|++++ +.+..++..+..+++|++|++++|......+..+..+++|+.|++++|.. +.++.  ...+++|+.
T Consensus        75 ~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           75 TLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             CCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred             CCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCE
Confidence            678888888887 46777777666777888888887644433335677778888888887743 33332  245667777


Q ss_pred             EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEeccc
Q 035836          223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED  287 (380)
Q Consensus       223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  287 (380)
                      |++++|... .++...   +..+++|+.|++++  +.+..++...       ...+.|+.|++++
T Consensus       153 L~L~~N~l~-~l~~~~---~~~l~~L~~L~L~~--N~l~~ip~~~-------~~~~~L~~l~L~~  204 (290)
T 1p9a_G          153 LSLANNNLT-ELPAGL---LNGLENLDTLLLQE--NSLYTIPKGF-------FGSHLLPFAFLHG  204 (290)
T ss_dssp             EECTTSCCS-CCCTTT---TTTCTTCCEEECCS--SCCCCCCTTT-------TTTCCCSEEECCS
T ss_pred             EECCCCcCC-ccCHHH---hcCcCCCCEEECCC--CcCCccChhh-------cccccCCeEEeCC
Confidence            777766432 222222   45666777777766  4555555544       2445666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=1.2e-15  Score=134.08  Aligned_cols=199  Identities=17%  Similarity=0.156  Sum_probs=129.1

Q ss_pred             CCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceecc-CCCccCCCC
Q 035836           97 LPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFT-EGGLPCAKL  173 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L  173 (380)
                      +|++|++|++++|. +..++ ..+..+++|++|++++| .+..++ ..+..+++|++|+++++ .+..++ ..+..+++|
T Consensus        26 l~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           26 LPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL  102 (276)
T ss_dssp             SCTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred             CCCCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence            34479999998885 44443 47788899999999885 444444 35677888999999884 555555 345667888


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCC-CC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc--
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS-LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR--  249 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~--  249 (380)
                      ++|++++|......+..+..+++|+.|++++|..... ++ ....+++|++|++++|....... ..   +..+++|+  
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~---~~~l~~L~~l  178 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TD---LRVLHQMPLL  178 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GG---GHHHHTCTTC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-HH---hhhhhhcccc
Confidence            8888887654443334577788888888888754331 22 23556778888887775433221 11   33334444  


Q ss_pred             --eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836          250 --RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC  312 (380)
Q Consensus       250 --~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  312 (380)
                        .|++++  +.+..++...       ....+|++|++++ +.++.++. .+..+++|++|+++++
T Consensus       179 ~l~L~ls~--n~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          179 NLSLDLSL--NPMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEEEECCS--SCCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ceeeecCC--CcccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence              677776  4555555433       2334678888877 45666665 4567777888887774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=2.8e-15  Score=136.34  Aligned_cols=238  Identities=22%  Similarity=0.234  Sum_probs=108.9

Q ss_pred             EEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccc
Q 035836           10 ILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATL   89 (380)
Q Consensus        10 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~   89 (380)
                      .++.++ .+++.+|. ..++++++|+++++. ++.++.+ .|.++++        |++|+++++...+.+      +   
T Consensus        13 ~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~-~f~~l~~--------L~~L~Ls~N~i~~~i------~---   71 (350)
T 4ay9_X           13 VFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKG-AFSGFGD--------LEKIEISQNDVLEVI------E---   71 (350)
T ss_dssp             EEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTT-SSTTCTT--------CCEEEEECCTTCCEE------C---
T ss_pred             EEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHH-HHcCCCC--------CCEEECcCCCCCCcc------C---
Confidence            344444 24555554 224567777777665 6666654 4555555        666666665433222      0   


Q ss_pred             cccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCCC
Q 035836           90 ESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEGG  167 (380)
Q Consensus        90 ~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~  167 (380)
                       .-.+..++ ++.++.+.++..+..+ |..+..+++|++|++++| .+..++. .+....++..+++.++..+..++...
T Consensus        72 -~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~  148 (350)
T 4ay9_X           72 -ADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS  148 (350)
T ss_dssp             -TTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred             -hhHhhcch-hhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccc
Confidence             00223344 2443333222233333 344555556666666553 3333332 22233344455554444444444322


Q ss_pred             c-cC-CCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836          168 L-PC-AKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF  245 (380)
Q Consensus       168 ~-~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  245 (380)
                      . .+ ..++.|++++| .++.++.....                       ..+|+++++.++..++.++...   |..+
T Consensus       149 f~~~~~~l~~L~L~~N-~i~~i~~~~f~-----------------------~~~L~~l~l~~~n~l~~i~~~~---f~~l  201 (350)
T 4ay9_X          149 FVGLSFESVILWLNKN-GIQEIHNSAFN-----------------------GTQLDELNLSDNNNLEELPNDV---FHGA  201 (350)
T ss_dssp             STTSBSSCEEEECCSS-CCCEECTTSST-----------------------TEEEEEEECTTCTTCCCCCTTT---TTTE
T ss_pred             hhhcchhhhhhccccc-cccCCChhhcc-----------------------ccchhHHhhccCCcccCCCHHH---hccC
Confidence            1 11 23444444432 22233322222                       2344444444444444333322   4555


Q ss_pred             CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeee
Q 035836          246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLI  310 (380)
Q Consensus       246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  310 (380)
                      ++|+.|++++  +.+..++..         .+.+|+.|.+.++..++.+| .+.++++|+.+++.
T Consensus       202 ~~L~~LdLs~--N~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          202 SGPVILDISR--TRIHSLPSY---------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT  254 (350)
T ss_dssp             ECCSEEECTT--SCCCCCCSS---------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred             cccchhhcCC--CCcCccChh---------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence            5666666655  345555541         23455555555555555555 35555566666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=8e-15  Score=133.31  Aligned_cols=222  Identities=21%  Similarity=0.201  Sum_probs=167.2

Q ss_pred             CCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCC
Q 035836           97 LPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKL  173 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L  173 (380)
                      +|+++++|++++|. ++.+|. .+.++++|++|++++|...+.++.. +.++++++.+....++.+..++.. +..+++|
T Consensus        28 l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           28 LPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             CCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             cCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            45589999999985 777765 6899999999999997777777754 567888887766666788888654 5668999


Q ss_pred             CEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCCC---CCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          174 TRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEED---GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      +.|++++|.. ..++ ..+.....+..|.+.++..+..++..   .....++.|++++|.... +...    .....+|+
T Consensus       107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~----~f~~~~L~  180 (350)
T 4ay9_X          107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNS----AFNGTQLD  180 (350)
T ss_dssp             CEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTT----SSTTEEEE
T ss_pred             cccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChh----hccccchh
Confidence            9999998654 4443 33445556778888777666655532   234579999999986433 3322    22456899


Q ss_pred             eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccE
Q 035836          250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLE  329 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~  329 (380)
                      +|.+.+ ++.++.++...      +..+++|++|++++ +.++.+|.  ..+.+|++|.+.+++.++.+|.-.-.++|+.
T Consensus       181 ~l~l~~-~n~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~  250 (350)
T 4ay9_X          181 ELNLSD-NNNLEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALME  250 (350)
T ss_dssp             EEECTT-CTTCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred             HHhhcc-CCcccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhh
Confidence            999988 78899988643      35789999999999 68999886  3367888899999999999998555679999


Q ss_pred             EEecCc
Q 035836          330 LWIWDC  335 (380)
Q Consensus       330 L~l~~c  335 (380)
                      +++.+.
T Consensus       251 l~l~~~  256 (350)
T 4ay9_X          251 ASLTYP  256 (350)
T ss_dssp             EECSCH
T ss_pred             CcCCCC
Confidence            998753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=5.2e-17  Score=146.94  Aligned_cols=220  Identities=13%  Similarity=0.111  Sum_probs=104.3

Q ss_pred             ccEEEEecCCChhhhHhhccCC--CCccEEeecCCCCCCcccccccCCCCCcEEEcccccccee--ccCCCccCCCCCEE
Q 035836          101 LRSLYVSHCSKLESIAERLDNN--TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVS--FTEGGLPCAKLTRL  176 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L  176 (380)
                      ++.++++++...   +..+..+  ++++.|+++++. +...+..+..+++|++|++++|. +..  ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE
Confidence            555565554321   2222233  456666666532 22223334455666666666543 221  33334445566666


Q ss_pred             eccCCCCcccccccCCCCCCccEEEeccCCCCCC--CCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCC-ccceee
Q 035836          177 DIYDCERLEALPKGLHNLTSLQELTIGKGVELPS--LEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFS-SLRRLA  252 (380)
Q Consensus       177 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~  252 (380)
                      ++++|......+..+..+++|+.|++++|..++.  ++. ...+++|++|++++|..++.......  +..++ +|++|+
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~  201 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLN  201 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEE
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEE
Confidence            6666543334444455566666666666533331  221 23455666666666633333211111  44555 666666


Q ss_pred             eecCCC-CC--cccccccccccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCcccCC--CCCccc
Q 035836          253 ISGCDD-DM--VSFPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKYFPE--KGLPSS  326 (380)
Q Consensus       253 l~~~~~-~l--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~  326 (380)
                      +++ |. .+  ..++...       ..+++|++|++++|..++ ..+..+..+++|++|++++|..+.....  -.-.++
T Consensus       202 l~~-~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          202 LSG-YRKNLQKSDLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CCS-CGGGSCHHHHHHHH-------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             eCC-CcccCCHHHHHHHH-------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            666 32 22  2222222       245566666666654333 2233555566666666666553322110  011345


Q ss_pred             ccEEEecCc
Q 035836          327 LLELWIWDC  335 (380)
Q Consensus       327 L~~L~l~~c  335 (380)
                      |++|++++|
T Consensus       274 L~~L~l~~~  282 (336)
T 2ast_B          274 LKTLQVFGI  282 (336)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeccCc
Confidence            666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=1.9e-15  Score=134.82  Aligned_cols=198  Identities=17%  Similarity=0.233  Sum_probs=153.2

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      ...++ +|++|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|++|+++++ .+..++ .+..+++|
T Consensus        37 ~~~l~-~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L  109 (308)
T 1h6u_A           37 QADLD-GITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSI  109 (308)
T ss_dssp             HHHHH-TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTC
T ss_pred             HHHcC-CcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCC
Confidence            33456 69999999984 56665 5778999999999985 5666666 888999999999984 566664 56678899


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI  253 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  253 (380)
                      ++|++++|. +..++. +..+++|+.|++++|. ++.++....+++|+.|++++|... ....     +..+++|+.|++
T Consensus       110 ~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-----l~~l~~L~~L~l  180 (308)
T 1h6u_A          110 KTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVS-DLTP-----LANLSKLTTLKA  180 (308)
T ss_dssp             CEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC-CCGG-----GTTCTTCCEEEC
T ss_pred             CEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCC-CChh-----hcCCCCCCEEEC
Confidence            999999875 444543 7889999999999984 344444667889999999998543 3333     668899999999


Q ss_pred             ecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836          254 SGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      ++  +.+..++. .       ..+++|++|++++ +.+..++ .+..+++|++|++++ +.++..+.
T Consensus       181 ~~--n~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~-N~i~~~~~  234 (308)
T 1h6u_A          181 DD--NKISDISP-L-------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTN-QTITNQPV  234 (308)
T ss_dssp             CS--SCCCCCGG-G-------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred             CC--CccCcChh-h-------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccC-CeeecCCe
Confidence            98  45666654 2       4778999999999 5777777 488899999999998 44665444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=5e-15  Score=129.62  Aligned_cols=62  Identities=23%  Similarity=0.439  Sum_probs=31.7

Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC  312 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  312 (380)
                      +..+++|+.|++++  +.+..++...      +..+++|++|++++ +.++.++. .+..+++|+.|+++++
T Consensus       153 ~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          153 FDKLTSLKELRLYN--NQLKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTTCTTCCEEECCS--SCCSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCCcccceeEecC--CcCcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCC
Confidence            44455566666655  2343333321      13445566666665 34555544 3555666666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.65  E-value=1.3e-15  Score=136.03  Aligned_cols=196  Identities=18%  Similarity=0.212  Sum_probs=134.2

Q ss_pred             CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEE
Q 035836           26 QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLY  105 (380)
Q Consensus        26 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~  105 (380)
                      ..+++|++|++.++. +..++   .+..+++        |+.|+++++. +..+      +      ++..++ +|++|+
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~---~~~~l~~--------L~~L~L~~n~-i~~~------~------~~~~l~-~L~~L~   91 (308)
T 1h6u_A           38 ADLDGITTLSAFGTG-VTTIE---GVQYLNN--------LIGLELKDNQ-ITDL------A------PLKNLT-KITELE   91 (308)
T ss_dssp             HHHHTCCEEECTTSC-CCCCT---TGGGCTT--------CCEEECCSSC-CCCC------G------GGTTCC-SCCEEE
T ss_pred             HHcCCcCEEEeeCCC-ccCch---hhhccCC--------CCEEEccCCc-CCCC------h------hHccCC-CCCEEE
Confidence            346778888888776 66655   2556666        8888888763 3333      1      245566 588888


Q ss_pred             EecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcc
Q 035836          106 VSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLE  185 (380)
Q Consensus       106 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~  185 (380)
                      +++|. +..++ .+..+++|++|++++| .+..++. +..+++|++|+++++ .+..++. +..+++|+.|++++|. +.
T Consensus        92 L~~n~-l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~  164 (308)
T 1h6u_A           92 LSGNP-LKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-VS  164 (308)
T ss_dssp             CCSCC-CSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CC
T ss_pred             ccCCc-CCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCc-CC
Confidence            88875 55554 5777888888888884 4555553 677888888888874 5555554 5567788888888864 44


Q ss_pred             cccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836          186 ALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP  264 (380)
Q Consensus       186 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~  264 (380)
                      .++. +..+++|+.|++++|.. +.++....+++|+.|++++|...... .     +..+++|+.|++++  +.+...+
T Consensus       165 ~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~N~l~~~~-~-----l~~l~~L~~L~l~~--N~i~~~~  233 (308)
T 1h6u_A          165 DLTP-LANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDVS-P-----LANTSNLFIVTLTN--QTITNQP  233 (308)
T ss_dssp             CCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECTTSCCCBCG-G-----GTTCTTCCEEEEEE--EEEECCC
T ss_pred             CChh-hcCCCCCCEEECCCCcc-CcChhhcCCCCCCEEEccCCccCccc-c-----ccCCCCCCEEEccC--CeeecCC
Confidence            4544 77788888888888743 44444567788999999888644332 2     66788999999988  3444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=2.1e-16  Score=141.38  Aligned_cols=201  Identities=19%  Similarity=0.167  Sum_probs=151.9

Q ss_pred             CCCCCccEEEEecCCChhhhHhhc--cCCCCccEEeecCCCCCCcccccccCC-----CCCcEEEccccccceecc-CCC
Q 035836           96 NLPPSLRSLYVSHCSKLESIAERL--DNNTSLETIDISNCESLKILPSGLHNL-----RQLQKIEIWECENLVSFT-EGG  167 (380)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~l~-~~~  167 (380)
                      .++ +|++|++++|.....+|..+  ..+++|++|++++|. +..+|..+..+     ++|++|++++ +.+..++ ..+
T Consensus        93 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~  169 (312)
T 1wwl_A           93 GIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQV  169 (312)
T ss_dssp             TTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTC
T ss_pred             CcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHh
Confidence            466 69999999996545677765  889999999999954 54446656555     8999999998 4566666 566


Q ss_pred             ccCCCCCEEeccCCCCccc--ccccC--CCCCCccEEEeccCCCCCCCCC-----CCCCCCceEEEecCCCCcchhhhhh
Q 035836          168 LPCAKLTRLDIYDCERLEA--LPKGL--HNLTSLQELTIGKGVELPSLEE-----DGLPTNLHSLEIDGNMEIWKSTIEW  238 (380)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~  238 (380)
                      ..+++|++|++++|.....  ++..+  ..+++|+.|++++|.. +.++.     ...+++|+.|++++|......+...
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            7789999999999875543  33333  7899999999999854 32211     1356899999999987544332111


Q ss_pred             ccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcc
Q 035836          239 GRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKY  317 (380)
Q Consensus       239 ~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  317 (380)
                         +..+++|+.|++++  +.+..++...        . ++|++|++++ +.++.+|. +..+++|++|++++ +.++.
T Consensus       249 ---~~~l~~L~~L~Ls~--N~l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~-N~l~~  310 (312)
T 1wwl_A          249 ---CDWPSQLNSLNLSF--TGLKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG-NPFLD  310 (312)
T ss_dssp             ---CCCCTTCCEEECTT--SCCSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT-CTTTC
T ss_pred             ---hhhcCCCCEEECCC--CccChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccC-CCCCC
Confidence               55689999999998  5666777644        2 8999999999 68888876 88999999999998 44543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=5.4e-15  Score=129.81  Aligned_cols=207  Identities=20%  Similarity=0.237  Sum_probs=151.7

Q ss_pred             hhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcccccc
Q 035836          112 LESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPK  189 (380)
Q Consensus       112 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~  189 (380)
                      +..+|..+  .++|++|++++| .+..++. .+.++++|++|+++++ .+..++. .+..+++|++|++++|......+.
T Consensus        19 l~~ip~~l--~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           19 FYKIPDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CSSCCSSS--CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             ccccCCCC--CCCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            33455544  257999999995 5555554 6788999999999995 6676665 566789999999999766555557


Q ss_pred             cCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccc
Q 035836          190 GLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDK  268 (380)
Q Consensus       190 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~  268 (380)
                      .+..+++|+.|++++|......+ ....+++|++|++++|.......+..   +..+++|+.|++++  +.+..++... 
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~---~~~l~~L~~L~Ls~--N~l~~~~~~~-  168 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSS--NKIQSIYCTD-  168 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---GGGCTTCCEEECCS--SCCCEECGGG-
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh---hccCCCCCEEECCC--CCCCcCCHHH-
Confidence            78899999999999985443333 35678999999999987544221222   77889999999998  4566554322 


Q ss_pred             cccCCCCCCCCcc----eEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCc
Q 035836          269 RLGTALPLPASLT----SLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDC  335 (380)
Q Consensus       269 ~~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c  335 (380)
                           +..+++|+    +|++++ +.++.++.......+|++|++++ +.++.++...+  .++|+.|+++++
T Consensus       169 -----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          169 -----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             -----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             -----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence                 12344555    889998 67888877555566899999999 56888877543  578999999843

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=2.4e-17  Score=155.75  Aligned_cols=308  Identities=19%  Similarity=0.131  Sum_probs=146.1

Q ss_pred             CCCCCccEEEEecCCCCccccC---CCCCC----CCceEeecCCcCccccc----cccceecCCCCccccccccceeEee
Q 035836            3 DTNSSLEILEIWVCHSLTYIAG---VQLPP----SLKQLRISDCDNIRTLT----VEEGIQSSSSSRRYTSYLLEELRIC   71 (380)
Q Consensus         3 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~----~L~~L~l~~~~~l~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~   71 (380)
                      ..+++|++|+++++. +.....   ...++    +|++|++++|. +....    .. .+..++.        |++|+++
T Consensus        53 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~-~l~~~~~--------L~~L~Ls  121 (461)
T 1z7x_W           53 RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSS-TLRTLPT--------LQELHLS  121 (461)
T ss_dssp             HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHH-HTTSCTT--------CCEEECC
T ss_pred             HhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHH-HHccCCc--------eeEEECC
Confidence            456889999998874 332111   11223    79999999887 65422    11 3555666        8888888


Q ss_pred             cCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCCCccccccc---
Q 035836           72 SCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESLKILPSGLH---  144 (380)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---  144 (380)
                      ++. +....     +..+...-....+ +|++|++++|....    .++..+..+++|++|++++|.....-+..+.   
T Consensus       122 ~n~-i~~~~-----~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  194 (461)
T 1z7x_W          122 DNL-LGDAG-----LQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL  194 (461)
T ss_dssp             SSB-CHHHH-----HHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             CCc-CchHH-----HHHHHHHHhcCCC-cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHH
Confidence            765 32210     0011100011223 47777777764322    3455556667777777776542211111111   


Q ss_pred             --CCCCCcEEEcccccccee-----ccCCCccCCCCCEEeccCCCCccc----c-cccCCCCCCccEEEeccCCCCCC--
Q 035836          145 --NLRQLQKIEIWECENLVS-----FTEGGLPCAKLTRLDIYDCERLEA----L-PKGLHNLTSLQELTIGKGVELPS--  210 (380)
Q Consensus       145 --~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~----~-~~~l~~~~~L~~L~l~~~~~~~~--  210 (380)
                        ..++|++|++++| .+..     ++..+..+++|++|++++|.....    + +.....+++|+.|++++|.. +.  
T Consensus       195 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~  272 (461)
T 1z7x_W          195 KDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKG  272 (461)
T ss_dssp             HHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHH
T ss_pred             hcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHH
Confidence              2456777777664 3332     233333456677777776532211    1 11223456677777776632 22  


Q ss_pred             ---CC-CCCCCCCceEEEecCCCCcchhhhhhccc-cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEec
Q 035836          211 ---LE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRG-FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWI  285 (380)
Q Consensus       211 ---~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l  285 (380)
                         ++ ....+++|++|++++|...........+. ....++|++|++++ |. +.....  ..+...+..+++|++|++
T Consensus       273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~-l~~~~~--~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS-CS-FTAACC--SHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT-SC-CBGGGH--HHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC-CC-CchHHH--HHHHHHHhhCCCccEEEc
Confidence               11 11235566677766664322111111000 11224666666666 32 221100  000001123456666666


Q ss_pred             ccCCCccchhh-hhc-----cCCCCceEeeecCCCCcc-----cCCC-CCcccccEEEecCch
Q 035836          286 EDFPNLERLSS-SIV-----DLQNLTILQLIDCPKLKY-----FPEK-GLPSSLLELWIWDCP  336 (380)
Q Consensus       286 ~~~~~l~~l~~-~~~-----~~~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~c~  336 (380)
                      +++ .+..... .+.     ..++|++|++++| .++.     ++.. ...++|++|++++|+
T Consensus       349 s~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          349 SNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             cCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            663 4443211 111     1456666666664 3432     2210 012456666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=2.2e-17  Score=149.38  Aligned_cols=106  Identities=11%  Similarity=0.228  Sum_probs=46.4

Q ss_pred             CccEEEEecCCChhh-hHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcccccccee--ccCCCccCCCCCEE
Q 035836          100 SLRSLYVSHCSKLES-IAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVS--FTEGGLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L  176 (380)
                      +|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..+..  ++..+..+++|++|
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L  173 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  173 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence            355555555532112 444455555555555555432223333444455555555555433331  22223334455555


Q ss_pred             eccCCCCccc--ccccCCCCC-CccEEEeccC
Q 035836          177 DIYDCERLEA--LPKGLHNLT-SLQELTIGKG  205 (380)
Q Consensus       177 ~l~~~~~~~~--~~~~l~~~~-~L~~L~l~~~  205 (380)
                      ++++|..++.  ++..+..++ +|+.|++++|
T Consensus       174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            5555422221  223333344 4444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.63  E-value=2.4e-14  Score=125.26  Aligned_cols=147  Identities=26%  Similarity=0.297  Sum_probs=64.3

Q ss_pred             ccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCCCEEe
Q 035836          101 LRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLD  177 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~  177 (380)
                      |++|++++|. +..++. .+..+++|++|++++| .+..++. .+..+++|++|++++ +.+..++.. +..+++|++|+
T Consensus        63 L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           63 LRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             CCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEE
Confidence            5555554442 222222 2344555555555542 2333332 234455555555554 233333332 23345555555


Q ss_pred             ccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836          178 IYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       178 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      +++|. +..++ ..+..+++|+.|++++|......+. ...+++|+.|++++|... ..+...   +..+++|+.|++++
T Consensus       140 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          140 LGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA---FDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCS
T ss_pred             CCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHH---hccccCCCEEEecC
Confidence            55542 22222 2244555555555555432221111 234455555555555322 222211   44566666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.61  E-value=1e-14  Score=127.71  Aligned_cols=147  Identities=24%  Similarity=0.235  Sum_probs=72.1

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCCCEEe
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLD  177 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~  177 (380)
                      +|++|++++|. +..+ ..+..+++|++|++++| .+..++. .+..+++|++|+++++ .+..++.. +..+++|+.|+
T Consensus        64 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           64 NVRYLALGGNK-LHDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             TCCEEECTTSC-CCCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcEEECCCCC-CCCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEE
Confidence            35555555553 3322 24455556666666553 2333332 2445556666666552 34444433 33455566666


Q ss_pred             ccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836          178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      +++|......+..+..+++|+.|++++|.. +.++.  ...+++|+.|++++|.... .....   +..+++|+.|++++
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~---~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGV---FDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT---TTTCTTCCEEECCS
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECCCCcCCc-cCHHH---HhCCcCCCEEEccC
Confidence            665432222223345556666666666532 22222  2445666666666654332 22211   45666677777766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=4e-15  Score=130.34  Aligned_cols=203  Identities=18%  Similarity=0.146  Sum_probs=136.6

Q ss_pred             CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEE
Q 035836           25 VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSL  104 (380)
Q Consensus        25 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L  104 (380)
                      ...+++|+.|++.++. +..++   .+..++.        |+.|+++++. +..+      +      .+..++ +|++|
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~~~---~l~~l~~--------L~~L~l~~n~-l~~~------~------~l~~l~-~L~~L   90 (272)
T 3rfs_A           37 QNELNSIDQIIANNSD-IKSVQ---GIQYLPN--------VRYLALGGNK-LHDI------S------ALKELT-NLTYL   90 (272)
T ss_dssp             HHHHTTCCEEECTTSC-CCCCT---TGGGCTT--------CCEEECTTSC-CCCC------G------GGTTCT-TCCEE
T ss_pred             cccccceeeeeeCCCC-ccccc---ccccCCC--------CcEEECCCCC-CCCc------h------hhcCCC-CCCEE
Confidence            3446788888888876 66554   3456666        8888888764 3322      1      355666 58888


Q ss_pred             EEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCCC-ccCCCCCEEeccCCC
Q 035836          105 YVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYDCE  182 (380)
Q Consensus       105 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~  182 (380)
                      ++++|......+..+..+++|++|++++|. +..++. .+..+++|++|+++++ .+..++... ..+++|+.|++++|.
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC
Confidence            888875333334456788889999998854 444443 4677888999999884 666666543 567889999998875


Q ss_pred             CcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCc
Q 035836          183 RLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMV  261 (380)
Q Consensus       183 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~  261 (380)
                      .....+..+..+++|+.|++++|......+. ...+++|+.|++++|..           ...+++|+.|+++. +....
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~l~~~~-n~~~g  236 (272)
T 3rfs_A          169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEWI-NKHSG  236 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-----------CCCTTTTHHHHHHH-HHTGG
T ss_pred             cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-----------cccCcHHHHHHHHH-HhCCC
Confidence            4433334567888999999988854433332 35678899999988852           33567788888776 44444


Q ss_pred             cccccc
Q 035836          262 SFPLED  267 (380)
Q Consensus       262 ~~~~~~  267 (380)
                      .+|...
T Consensus       237 ~ip~~~  242 (272)
T 3rfs_A          237 VVRNSA  242 (272)
T ss_dssp             GBBCTT
T ss_pred             cccCcc
Confidence            555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=5.5e-15  Score=132.09  Aligned_cols=223  Identities=13%  Similarity=0.062  Sum_probs=139.5

Q ss_pred             CccEEEEecCCChh----hhHhhccCCCCccEEeecCCCCCCcccccc--cCCCCCcEEEccccccceec-c----CCCc
Q 035836          100 SLRSLYVSHCSKLE----SIAERLDNNTSLETIDISNCESLKILPSGL--HNLRQLQKIEIWECENLVSF-T----EGGL  168 (380)
Q Consensus       100 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l-~----~~~~  168 (380)
                      .++.+.+.++....    .+.. +..+++|++|++++|......|..+  ..+++|++|+++++ .+... +    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence            37788887764322    1222 2234678999998876666666665  77888999998884 34331 1    1223


Q ss_pred             cCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCC--C---CCCCCCCCceEEEecCCCCcchhh-hhhcccc
Q 035836          169 PCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPS--L---EEDGLPTNLHSLEIDGNMEIWKST-IEWGRGF  242 (380)
Q Consensus       169 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~  242 (380)
                      .+++|++|++++|......+..+..+++|+.|++++|.....  +   .....+++|++|++++|....... ..+.  +
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l--~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL--A  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH--H
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH--H
Confidence            467888888888766555556777888888888888754321  1   112456788888888876432111 1111  3


Q ss_pred             CCCCccceeeeecCCCCCccc-ccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCC
Q 035836          243 HRFSSLRRLAISGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEK  321 (380)
Q Consensus       243 ~~~~~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~  321 (380)
                      ..+++|++|++++  +.+..+ +....    .+..+++|++|++++ +.++.+|..+.  ++|++|++++ +.++.+|.-
T Consensus       221 ~~l~~L~~L~Ls~--N~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~  290 (310)
T 4glp_A          221 AAGVQPHSLDLSH--NSLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQP  290 (310)
T ss_dssp             HHTCCCSSEECTT--SCCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCT
T ss_pred             hcCCCCCEEECCC--CCCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchh
Confidence            4667888888887  344443 43331    112236888888887 57777776543  7888888887 567766553


Q ss_pred             CCcccccEEEecCch
Q 035836          322 GLPSSLLELWIWDCP  336 (380)
Q Consensus       322 ~~~~~L~~L~l~~c~  336 (380)
                      ...++|+.|++++++
T Consensus       291 ~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          291 DELPEVDNLTLDGNP  305 (310)
T ss_dssp             TSCCCCSCEECSSTT
T ss_pred             hhCCCccEEECcCCC
Confidence            345678888887754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=5.6e-15  Score=132.00  Aligned_cols=200  Identities=18%  Similarity=0.119  Sum_probs=142.0

Q ss_pred             CccEEEEecCCChhhhHhhc--cCCCCccEEeecCCCCCCccc----ccccCCCCCcEEEccccccceecc-CCCccCCC
Q 035836          100 SLRSLYVSHCSKLESIAERL--DNNTSLETIDISNCESLKILP----SGLHNLRQLQKIEIWECENLVSFT-EGGLPCAK  172 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~  172 (380)
                      +|++|++++|......|..+  ..+++|++|++++|......+    ..+..+++|++|+++++ .+..++ ..+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCC
Confidence            59999999987555666666  788999999999865544333    23446889999999884 555555 45567889


Q ss_pred             CCEEeccCCCCccc--cc--ccCCCCCCccEEEeccCCCCCCCCC-----CCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836          173 LTRLDIYDCERLEA--LP--KGLHNLTSLQELTIGKGVELPSLEE-----DGLPTNLHSLEIDGNMEIWKSTIEWGRGFH  243 (380)
Q Consensus       173 L~~L~l~~~~~~~~--~~--~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  243 (380)
                      |++|++++|.....  ++  ..+..+++|+.|++++|.. +.++.     ...+++|++|++++|......+..+. .+.
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCM  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hcc
Confidence            99999998865432  22  2346788999999998843 33332     23568999999999875443222111 133


Q ss_pred             CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCc
Q 035836          244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLK  316 (380)
Q Consensus       244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  316 (380)
                      .+++|++|++++  +.+..++...         +++|++|++++ +.++.+|. +..+++|+.|+++++ .++
T Consensus       249 ~~~~L~~L~Ls~--N~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N-~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSF--AGLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN-PFL  307 (310)
T ss_dssp             CCTTCCCEECCS--SCCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST-TTS
T ss_pred             CcCcCCEEECCC--CCCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC-CCC
Confidence            347999999998  5666777643         37999999999 68888764 788899999999984 443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=1.4e-15  Score=140.34  Aligned_cols=209  Identities=15%  Similarity=0.086  Sum_probs=126.2

Q ss_pred             cCCCCCCccEEEEecCC--Chh-hhH-------hhccCCCCccEEeecCCCCCC----cccccccCCCCCcEEEcccccc
Q 035836           94 VGNLPPSLRSLYVSHCS--KLE-SIA-------ERLDNNTSLETIDISNCESLK----ILPSGLHNLRQLQKIEIWECEN  159 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~--~~~-~~~-------~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~  159 (380)
                      +..++ +|++|++++|.  .+. .+|       ..+..+++|++|++++|....    .++..+..+++|++|++++|. 
T Consensus        56 l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-  133 (386)
T 2ca6_A           56 IASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-  133 (386)
T ss_dssp             TTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-
T ss_pred             HHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-
Confidence            33455 57777777752  111 223       334677888888888754433    255566677888888887753 


Q ss_pred             cee-----ccCCCccC---------CCCCEEeccCCCCc-cccc---ccCCCCCCccEEEeccCCCCC-----CCC-CCC
Q 035836          160 LVS-----FTEGGLPC---------AKLTRLDIYDCERL-EALP---KGLHNLTSLQELTIGKGVELP-----SLE-EDG  215 (380)
Q Consensus       160 l~~-----l~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~-~~~  215 (380)
                      +..     ++..+..+         ++|++|++++|... ..++   ..+..+++|+.|++++|....     ..+ ...
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence            321     11111122         68888888876543 2333   345567788888888874321     122 345


Q ss_pred             CCCCceEEEecCCCCc----chhhhhhccccCCCCccceeeeecCCCCCccc-----ccccccccCCCCCCCCcceEecc
Q 035836          216 LPTNLHSLEIDGNMEI----WKSTIEWGRGFHRFSSLRRLAISGCDDDMVSF-----PLEDKRLGTALPLPASLTSLWIE  286 (380)
Q Consensus       216 ~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~  286 (380)
                      .+++|+.|++++|...    ..++. .   +..+++|+.|++++ |. +...     +....     ...+++|++|+++
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~-~---l~~~~~L~~L~L~~-n~-i~~~~~~~l~~~l~-----~~~~~~L~~L~L~  282 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAI-A---LKSWPNLRELGLND-CL-LSARGAAAVVDAFS-----KLENIGLQTLRLQ  282 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHH-H---GGGCTTCCEEECTT-CC-CCHHHHHHHHHHHH-----TCSSCCCCEEECC
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHH-H---HccCCCcCEEECCC-CC-CchhhHHHHHHHHh-----hccCCCeEEEECc
Confidence            6778888888887642    11221 1   66788899999988 33 4332     22110     0136789999998


Q ss_pred             cCCCccc-----hhhhh-ccCCCCceEeeecCCCCcc
Q 035836          287 DFPNLER-----LSSSI-VDLQNLTILQLIDCPKLKY  317 (380)
Q Consensus       287 ~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~  317 (380)
                      +| .+..     ++..+ .++++|++|++++| .++.
T Consensus       283 ~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~  317 (386)
T 2ca6_A          283 YN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE  317 (386)
T ss_dssp             SS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred             CC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence            84 5665     67655 66899999999885 3443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=4.7e-13  Score=115.68  Aligned_cols=61  Identities=20%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID  311 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~  311 (380)
                      +..+++|+.|++++  +.+..++...      +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus       127 ~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          127 FDRLTKLKELRLNT--NQLQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             TTTCTTCCEEECCS--SCCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             hccCCcccEEECcC--CcCCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence            34455555555555  2444443311      13445555555555 34444443 455555666666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.50  E-value=5.5e-13  Score=115.27  Aligned_cols=133  Identities=23%  Similarity=0.248  Sum_probs=78.8

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccCCC-ccCC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTEGG-LPCA  171 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~  171 (380)
                      +..++ +|++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+..++... ..++
T Consensus        55 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~  131 (251)
T 3m19_A           55 FRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLT  131 (251)
T ss_dssp             TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred             hcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCC
Confidence            34445 4777777666433333444566777777777764 333343 3345677777777776 3556655543 4466


Q ss_pred             CCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCC
Q 035836          172 KLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNME  230 (380)
Q Consensus       172 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  230 (380)
                      +|+.|++++|.. +.++ ..+..+++|+.|++++|......+ ....+++|+.|++++|..
T Consensus       132 ~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          132 KLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             cccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            777777776533 3343 356677777777777764332222 234567788888877753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.48  E-value=4.4e-13  Score=111.41  Aligned_cols=151  Identities=18%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             CCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           27 LPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      .+++|+.|+++++. +..++   .+..+++        |++|++++| .+..+      +      .+..++ +|++|++
T Consensus        42 ~l~~L~~L~l~~n~-i~~l~---~l~~l~~--------L~~L~l~~n-~~~~~------~------~l~~l~-~L~~L~l   95 (197)
T 4ezg_A           42 QMNSLTYITLANIN-VTDLT---GIEYAHN--------IKDLTINNI-HATNY------N------PISGLS-NLERLRI   95 (197)
T ss_dssp             HHHTCCEEEEESSC-CSCCT---TGGGCTT--------CSEEEEESC-CCSCC------G------GGTTCT-TCCEEEE
T ss_pred             hcCCccEEeccCCC-ccChH---HHhcCCC--------CCEEEccCC-CCCcc------h------hhhcCC-CCCEEEe
Confidence            35677777777776 66555   2555666        788888776 33322      1      344556 5888888


Q ss_pred             ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccc
Q 035836          107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEA  186 (380)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~  186 (380)
                      ++|......+..+..+++|++|++++|......+..+..+++|++|++++|..+..++ .+..+++|+.|++++|. +..
T Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~  173 (197)
T 4ezg_A           96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHD  173 (197)
T ss_dssp             ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCC
T ss_pred             ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcC
Confidence            8775444466677778888888888755544456667778888888888754466665 45567788888888764 334


Q ss_pred             ccccCCCCCCccEEEeccCC
Q 035836          187 LPKGLHNLTSLQELTIGKGV  206 (380)
Q Consensus       187 ~~~~l~~~~~L~~L~l~~~~  206 (380)
                      ++ .+..+++|+.|++++|.
T Consensus       174 ~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          174 YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CT-TGGGCSSCCEEEECBC-
T ss_pred             hH-HhccCCCCCEEEeeCcc
Confidence            44 56677888888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=4.6e-13  Score=118.35  Aligned_cols=163  Identities=18%  Similarity=0.301  Sum_probs=84.0

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|+.|+++++ .+..++. +..+++|++|+++
T Consensus        47 ~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECT
T ss_pred             cccEEEccCCC-cccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECC
Confidence            46666666653 33333 2455666666666663 3333433 555666666666552 3443332 3444555555555


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDD  259 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  259 (380)
                      +|. +..+ ..+..+++|+.|+++                       +|.... ...     +..+++|+.|++++  +.
T Consensus       121 ~n~-i~~~-~~l~~l~~L~~L~l~-----------------------~n~l~~-~~~-----l~~l~~L~~L~L~~--N~  167 (291)
T 1h6t_A          121 HNG-ISDI-NGLVHLPQLESLYLG-----------------------NNKITD-ITV-----LSRLTKLDTLSLED--NQ  167 (291)
T ss_dssp             TSC-CCCC-GGGGGCTTCCEEECC-----------------------SSCCCC-CGG-----GGGCTTCSEEECCS--SC
T ss_pred             CCc-CCCC-hhhcCCCCCCEEEcc-----------------------CCcCCc-chh-----hccCCCCCEEEccC--Cc
Confidence            542 2222 223344444444444                       443221 111     44566666666665  24


Q ss_pred             CcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeec
Q 035836          260 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLID  311 (380)
Q Consensus       260 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  311 (380)
                      +..++. .       ..+++|++|++++ +.++.++ .+..+++|+.|++++
T Consensus       168 l~~~~~-l-------~~l~~L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          168 ISDIVP-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFS  209 (291)
T ss_dssp             CCCCGG-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccchh-h-------cCCCccCEEECCC-CcCCCCh-hhccCCCCCEEECcC
Confidence            444433 2       3556677777766 4566655 366667777777766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.47  E-value=1.2e-14  Score=133.88  Aligned_cols=229  Identities=14%  Similarity=0.099  Sum_probs=156.3

Q ss_pred             CCCCCCccEEEEecCCChhh----hHhhccCCCCccEEeecCCC--CC-Ccccccc-------cCCCCCcEEEccccccc
Q 035836           95 GNLPPSLRSLYVSHCSKLES----IAERLDNNTSLETIDISNCE--SL-KILPSGL-------HNLRQLQKIEIWECENL  160 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~~-------~~l~~L~~L~l~~~~~l  160 (380)
                      ..++ +|++|++++|.....    +...+..+++|++|++++|.  .+ ..+|..+       ..+++|++|+++++ .+
T Consensus        29 ~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l  106 (386)
T 2ca6_A           29 LEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF  106 (386)
T ss_dssp             HHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred             hcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence            3455 699999999853333    44557789999999999862  22 2334443       67899999999985 44


Q ss_pred             ee-----ccCCCccCCCCCEEeccCCCCccc----ccccCCCC---------CCccEEEeccCCCC-CCCC----CCCCC
Q 035836          161 VS-----FTEGGLPCAKLTRLDIYDCERLEA----LPKGLHNL---------TSLQELTIGKGVEL-PSLE----EDGLP  217 (380)
Q Consensus       161 ~~-----l~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~---------~~L~~L~l~~~~~~-~~~~----~~~~~  217 (380)
                      ..     ++..+..+++|++|++++|.....    ++..+..+         ++|+.|++++|... ..++    ....+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            43     454556689999999999865322    22333334         89999999998543 1222    12356


Q ss_pred             CCceEEEecCCCCcchhhhhhcc-ccCCCCccceeeeecCCCCC-----cccccccccccCCCCCCCCcceEecccCCCc
Q 035836          218 TNLHSLEIDGNMEIWKSTIEWGR-GFHRFSSLRRLAISGCDDDM-----VSFPLEDKRLGTALPLPASLTSLWIEDFPNL  291 (380)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~l-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  291 (380)
                      ++|++|++++|.....-...... .+..+++|+.|++++ | .+     ..++...       ..+++|++|++++| .+
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n-~l~~~g~~~l~~~l-------~~~~~L~~L~L~~n-~i  256 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWPNLRELGLNDC-LL  256 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCTTCCEEECTTC-CC
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-C-CCCcHHHHHHHHHH-------ccCCCcCEEECCCC-CC
Confidence            79999999999654221111101 277889999999998 4 34     3444433       57789999999995 56


Q ss_pred             cch-----hhhhcc--CCCCceEeeecCCCCcc-----cCCCC--CcccccEEEecCch
Q 035836          292 ERL-----SSSIVD--LQNLTILQLIDCPKLKY-----FPEKG--LPSSLLELWIWDCP  336 (380)
Q Consensus       292 ~~l-----~~~~~~--~~~L~~L~l~~c~~l~~-----~~~~~--~~~~L~~L~l~~c~  336 (380)
                      ...     +..+..  +++|++|++++| .++.     ++...  ..++|++|++++|+
T Consensus       257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          257 SARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             chhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            543     445533  899999999995 5655     54421  14789999999885

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=4e-13  Score=111.65  Aligned_cols=149  Identities=14%  Similarity=0.162  Sum_probs=97.0

Q ss_pred             CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcccccccee-ccCCCccCCCC
Q 035836           95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVS-FTEGGLPCAKL  173 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~L  173 (380)
                      ..++ +|++|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|+++++ .+.. .+..+..+++|
T Consensus        41 ~~l~-~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMN-SLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHH-TCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred             hhcC-CccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence            3444 58888888874 55665 5777888888888875 444443 5667888888888874 4443 45566667788


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI  253 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  253 (380)
                      ++|++++|......+..+..+++|+.|++++|..++.++....+++|+.|++++|.... ...     +..+++|+.|++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~~-----l~~l~~L~~L~l  188 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YRG-----IEDFPKLNQLYA  188 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CTT-----GGGCSSCCEEEE
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hHH-----hccCCCCCEEEe
Confidence            88888876655555566777778888888877545555544556666666666654322 211     445566666666


Q ss_pred             ec
Q 035836          254 SG  255 (380)
Q Consensus       254 ~~  255 (380)
                      ++
T Consensus       189 ~~  190 (197)
T 4ezg_A          189 FS  190 (197)
T ss_dssp             CB
T ss_pred             eC
Confidence            65

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=8.2e-13  Score=116.72  Aligned_cols=146  Identities=17%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             CCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          170 CAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       170 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      +++|++|++++|. +..++. +..+++|+.|++++|. ++.++....+++|+.|++++|.... ...     +..+++|+
T Consensus        67 l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~-~~~-----l~~l~~L~  137 (291)
T 1h6t_A           67 LPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISD-ING-----LVHLPQLE  137 (291)
T ss_dssp             CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCC-CGG-----GGGCTTCC
T ss_pred             CCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcCCC-Chh-----hcCCCCCC
Confidence            4444444444432 222222 4445555555555542 2333334455666666666664322 221     66789999


Q ss_pred             eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccE
Q 035836          250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLE  329 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~  329 (380)
                      .|++++  +.+..++. .       ..+++|++|++++ +.++.++. +..+++|++|++++ +.++.++.-.-.++|+.
T Consensus       138 ~L~l~~--n~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~  204 (291)
T 1h6t_A          138 SLYLGN--NKITDITV-L-------SRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDV  204 (291)
T ss_dssp             EEECCS--SCCCCCGG-G-------GGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSE
T ss_pred             EEEccC--CcCCcchh-h-------ccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCC-CcCCCChhhccCCCCCE
Confidence            999998  45666532 2       4789999999999 57887775 88999999999999 57888766444679999


Q ss_pred             EEecCchh
Q 035836          330 LWIWDCPL  337 (380)
Q Consensus       330 L~l~~c~~  337 (380)
                      |++++|+-
T Consensus       205 L~l~~n~i  212 (291)
T 1h6t_A          205 LELFSQEC  212 (291)
T ss_dssp             EEEEEEEE
T ss_pred             EECcCCcc
Confidence            99998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.44  E-value=3.4e-14  Score=129.74  Aligned_cols=231  Identities=16%  Similarity=0.075  Sum_probs=145.4

Q ss_pred             cCCCCCCccEEEEecCCChhhh-H----hhccCCC-CccEEeecCCCCCCcccccccCC-----CCCcEEEcccccccee
Q 035836           94 VGNLPPSLRSLYVSHCSKLESI-A----ERLDNNT-SLETIDISNCESLKILPSGLHNL-----RQLQKIEIWECENLVS  162 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~-~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~  162 (380)
                      +...+++|++|++++|. +... +    ..+..++ +|++|++++|......+..+..+     ++|++|++++| .+..
T Consensus        17 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~   94 (362)
T 3goz_A           17 FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSY   94 (362)
T ss_dssp             HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGG
T ss_pred             HHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCCh
Confidence            34556579999999986 5433 2    6677888 99999999964433333334332     89999999985 4543


Q ss_pred             ccCC-----CccC-CCCCEEeccCCCCcccccc----cCCC-CCCccEEEeccCCCCCCC----CC-C-CCCCCceEEEe
Q 035836          163 FTEG-----GLPC-AKLTRLDIYDCERLEALPK----GLHN-LTSLQELTIGKGVELPSL----EE-D-GLPTNLHSLEI  225 (380)
Q Consensus       163 l~~~-----~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-~~~L~~L~l~~~~~~~~~----~~-~-~~~~~L~~L~l  225 (380)
                      ....     +..+ ++|++|++++|......+.    .+.. .++|+.|++++|......    .. . ...++|++|++
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence            3221     2233 6899999999764332222    2344 369999999988533211    11 1 22359999999


Q ss_pred             cCCCCcchhhhhhccccCCC-CccceeeeecCCCCCcc-----cccccccccCCCCCCCCcceEecccCCCccch-----
Q 035836          226 DGNMEIWKSTIEWGRGFHRF-SSLRRLAISGCDDDMVS-----FPLEDKRLGTALPLPASLTSLWIEDFPNLERL-----  294 (380)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----  294 (380)
                      ++|...........+.+..+ ++|+.|++++  +.+..     ++....      ...++|++|++++ +.+...     
T Consensus       175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l  245 (362)
T 3goz_A          175 RGNNLASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENL  245 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHH
T ss_pred             cCCCCchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHH
Confidence            99865433322221124455 4999999998  34544     333221      1246899999998 466543     


Q ss_pred             hhhhccCCCCceEeeecCCCCcccCC---------CCCcccccEEEecCch
Q 035836          295 SSSIVDLQNLTILQLIDCPKLKYFPE---------KGLPSSLLELWIWDCP  336 (380)
Q Consensus       295 ~~~~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~~L~~L~l~~c~  336 (380)
                      ...+..+++|++|++++|. +..+..         -...++|++|++++++
T Consensus       246 ~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          246 KLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            2355778999999999864 222221         1124578889998875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.44  E-value=8.5e-15  Score=133.77  Aligned_cols=227  Identities=13%  Similarity=0.103  Sum_probs=112.5

Q ss_pred             EEEecCCCCccccC-CCCCCCCceEeecCCcCcccccccc---ceecCC-CCccccccccceeEeecCCCcccccccCCC
Q 035836           11 LEIWVCHSLTYIAG-VQLPPSLKQLRISDCDNIRTLTVEE---GIQSSS-SSRRYTSYLLEELRICSCRSLTCIFSKNEL   85 (380)
Q Consensus        11 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~   85 (380)
                      +.++++..-..++. ....++|++|++++|. +...+...   .+..++ .        |++|++++|. +....     
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~--------L~~L~Ls~N~-l~~~~-----   67 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPAS--------VTSLNLSGNS-LGFKN-----   67 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTT--------CCEEECCSSC-GGGSC-----
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCc--------eeEEECcCCC-CCHHH-----
Confidence            44555433223333 2335568888888887 77666411   344444 5        8888888763 32220     


Q ss_pred             CccccccccCCCCCCccEEEEecCCChhhhHh----hccCC-CCccEEeecCCCCCCcccc-c----ccC-CCCCcEEEc
Q 035836           86 PATLESLEVGNLPPSLRSLYVSHCSKLESIAE----RLDNN-TSLETIDISNCESLKILPS-G----LHN-LRQLQKIEI  154 (380)
Q Consensus        86 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~-~----~~~-l~~L~~L~l  154 (380)
                      +..+.. .+...+++|++|++++|......+.    .+..+ ++|++|++++|. +...+. .    +.. .++|++|++
T Consensus        68 ~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~L  145 (362)
T 3goz_A           68 SDELVQ-ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNL  145 (362)
T ss_dssp             HHHHHH-HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred             HHHHHH-HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEc
Confidence            111111 1112212688888888753222222    34444 788888888754 333322 1    223 357888888


Q ss_pred             cccccce-----eccCCCccCC-CCCEEeccCCCCccccc----ccCCCC-CCccEEEeccCCCCCC----CCC-C-CCC
Q 035836          155 WECENLV-----SFTEGGLPCA-KLTRLDIYDCERLEALP----KGLHNL-TSLQELTIGKGVELPS----LEE-D-GLP  217 (380)
Q Consensus       155 ~~~~~l~-----~l~~~~~~~~-~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~----~~~-~-~~~  217 (380)
                      ++| .+.     .++..+..++ +|++|++++|......+    ..+..+ ++|+.|++++|.....    ++. . ..+
T Consensus       146 s~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~  224 (362)
T 3goz_A          146 RGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP  224 (362)
T ss_dssp             TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred             cCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence            774 333     1222222233 67777777764332222    123334 4677777776642211    111 1 113


Q ss_pred             CCceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836          218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      ++|++|++++|.............+..+++|+.|++++
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence            46666666665432211111001144556666666666

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.40  E-value=4.5e-12  Score=121.65  Aligned_cols=110  Identities=28%  Similarity=0.407  Sum_probs=52.3

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++++|. +..+|   ..+++|++|++++| .+..+|. +..  +|++|++++ +.+..+|.   .+++|+.|+++
T Consensus        81 ~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           81 QITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN-NQLTMLPE---LPALLEYINAD  148 (571)
T ss_dssp             TCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS-SCCSCCCC---CCTTCCEEECC
T ss_pred             CCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC-CcCCCCCC---cCccccEEeCC
Confidence            46666665553 33444   33455556666553 3333444 322  555555555 34444444   33455555555


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGN  228 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  228 (380)
                      +|. ++.+|.   .+++|+.|++++|. ++.+|.  ..++|+.|++++|
T Consensus       149 ~N~-l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~~~L~~L~Ls~N  190 (571)
T 3cvr_A          149 NNQ-LTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LPESLEALDVSTN  190 (571)
T ss_dssp             SSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS
T ss_pred             CCc-cCcCCC---cCCCcCEEECCCCC-CCCcch--hhCCCCEEECcCC
Confidence            543 223433   34455555555553 222333  1145555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=1.3e-12  Score=126.61  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|+.|++++|. +..++ .+..+++|++|++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|+++
T Consensus        88 ~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           88 NLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             TCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECC
T ss_pred             CCCEEECcCCC-CCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECc
Confidence            35555555542 33332 3444555555555542 222222 2444555555555542 33333 233334455555555


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM  229 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  229 (380)
                      +|.... ++. +..+++|+.|+|++|. +..++....+++|+.|+|++|.
T Consensus       162 ~N~l~~-~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          162 DNQISD-IVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             SSCCCC-CGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred             CCcCCC-chh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence            443222 222 4445555555555442 2223333444455555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=2.9e-12  Score=124.19  Aligned_cols=175  Identities=18%  Similarity=0.255  Sum_probs=136.8

Q ss_pred             cCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccE
Q 035836          120 DNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQE  199 (380)
Q Consensus       120 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  199 (380)
                      ..+++|+.|++++ +.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence            4578899999998 4566665 5788999999999984 6676665 6778999999999874 44554 6888999999


Q ss_pred             EEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCC
Q 035836          200 LTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPAS  279 (380)
Q Consensus       200 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (380)
                      |++++|. +..++....+++|+.|+|++|.... ...     +..+++|+.|++++  +.+..++. .       ..+++
T Consensus       114 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~-----l~~l~~L~~L~Ls~--N~l~~~~~-l-------~~l~~  176 (605)
T 1m9s_A          114 LSLEHNG-ISDINGLVHLPQLESLYLGNNKITD-ITV-----LSRLTKLDTLSLED--NQISDIVP-L-------AGLTK  176 (605)
T ss_dssp             EECTTSC-CCCCGGGGGCTTCSEEECCSSCCCC-CGG-----GGSCTTCSEEECCS--SCCCCCGG-G-------TTCTT
T ss_pred             EEecCCC-CCCCccccCCCccCEEECCCCccCC-chh-----hcccCCCCEEECcC--CcCCCchh-h-------ccCCC
Confidence            9999985 3445666778999999999986443 322     77899999999998  35555544 3       47899


Q ss_pred             cceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCC
Q 035836          280 LTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       280 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      |+.|++++ +.+..++ .+..+++|+.|++++| .+...|.
T Consensus       177 L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~  214 (605)
T 1m9s_A          177 LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI  214 (605)
T ss_dssp             CCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred             CCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence            99999999 5788776 6888999999999985 4555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=9.3e-12  Score=119.44  Aligned_cols=141  Identities=22%  Similarity=0.254  Sum_probs=71.4

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++++|. +..+|. +..  +|++|++++| .+..+|.   .+++|+.|++++ +.+..+|.   .+++|+.|+++
T Consensus       101 ~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls  168 (571)
T 3cvr_A          101 SLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVR  168 (571)
T ss_dssp             TCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECC
T ss_pred             CCCEEEccCCC-CCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECC
Confidence            46666666653 333444 332  6666666653 3334554   355666666665 34444444   23466666666


Q ss_pred             CCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCc-------eEEEecCCCCcchhhhhhccccCCCCccceee
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNL-------HSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLA  252 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  252 (380)
                      +|. ++.+|. +.  ++|+.|++++|. ++.+|.  ...+|       +.|++++|... .++..    +..+++|+.|+
T Consensus       169 ~N~-L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~----l~~l~~L~~L~  236 (571)
T 3cvr_A          169 NNQ-LTFLPE-LP--ESLEALDVSTNL-LESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPEN----ILSLDPTCTII  236 (571)
T ss_dssp             SSC-CSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC--------CCEEEECCSSCCC-CCCGG----GGGSCTTEEEE
T ss_pred             CCC-CCCcch-hh--CCCCEEECcCCC-CCchhh--HHHhhhcccccceEEecCCCcce-ecCHH----HhcCCCCCEEE
Confidence            643 333544 33  566666666653 334443  22255       67777666433 22221    33466777777


Q ss_pred             eecCCCCCccccc
Q 035836          253 ISGCDDDMVSFPL  265 (380)
Q Consensus       253 l~~~~~~l~~~~~  265 (380)
                      +++ |.....++.
T Consensus       237 L~~-N~l~~~~p~  248 (571)
T 3cvr_A          237 LED-NPLSSRIRE  248 (571)
T ss_dssp             CCS-SSCCHHHHH
T ss_pred             eeC-CcCCCcCHH
Confidence            776 333333443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=1.6e-12  Score=113.11  Aligned_cols=119  Identities=15%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccC
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYD  180 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  180 (380)
                      +..++++++. +..++ .+..+++|++|++++| .+..++ .+..+++|+.|++++ +.+..++. +..+++|+.|++++
T Consensus        21 l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCC
Confidence            5555555542 33333 3445666777777663 444555 455666666666666 34555544 44555666666665


Q ss_pred             CCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCC
Q 035836          181 CERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNM  229 (380)
Q Consensus       181 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  229 (380)
                      |. ++.++.. .. ++|+.|++++|. ++.++....+++|+.|++++|.
T Consensus        95 N~-l~~l~~~-~~-~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A           95 NR-LKNLNGI-PS-ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             SC-CSCCTTC-CC-SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSC
T ss_pred             Cc-cCCcCcc-cc-CcccEEEccCCc-cCCChhhcCcccccEEECCCCc
Confidence            42 2333321 11 455555555542 2223333344444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.34  E-value=1.8e-11  Score=102.47  Aligned_cols=142  Identities=20%  Similarity=0.185  Sum_probs=90.9

Q ss_pred             CCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCCCE
Q 035836           99 PSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTR  175 (380)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~  175 (380)
                      .+|++|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++.. +..+++|+.
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCE
Confidence            368889988885 44443 34678888888888884 45555543 56788888888887 456666654 355778888


Q ss_pred             EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeee
Q 035836          176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAI  253 (380)
Q Consensus       176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  253 (380)
                      |++++|......+..+..+++|+.|++++|.. +.++.  ...+++|+.|++++|..           ...+++|+.|++
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~L~~  172 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSE  172 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCB-----------CCCTTTTHHHHH
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCe-----------ecCCCCHHHHHH
Confidence            88887644333333466777888888877743 33322  24456667777666631           234455666665


Q ss_pred             ec
Q 035836          254 SG  255 (380)
Q Consensus       254 ~~  255 (380)
                      +.
T Consensus       173 ~~  174 (208)
T 2o6s_A          173 WI  174 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.29  E-value=4.9e-11  Score=101.37  Aligned_cols=125  Identities=21%  Similarity=0.208  Sum_probs=55.9

Q ss_pred             CCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      +|+.|++++|......+..+..+++|+.|++++|.. ..++.  ...+++|+.|++++|.. +.+....   +..+++|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~---~~~l~~L~  115 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TVLPSAV---FDRLVHLK  115 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT---TTTCTTCC
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcC-CccChhH---hCcchhhC
Confidence            455555554433333334444555555555555432 22221  12334444444444322 1111111   34455555


Q ss_pred             eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836          250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID  311 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~  311 (380)
                      .|++++  +.+..++...       ..+++|++|++++ +.++.++. .+..+++|++|++.+
T Consensus       116 ~L~Ls~--N~l~~lp~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          116 ELFMCC--NKLTELPRGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             EEECCS--SCCCSCCTTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eEeccC--CcccccCccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence            555554  3444444333       2445555555555 34554443 445555555555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.27  E-value=1.8e-11  Score=102.46  Aligned_cols=170  Identities=19%  Similarity=0.261  Sum_probs=116.7

Q ss_pred             cEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCcc
Q 035836            9 EILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPAT   88 (380)
Q Consensus         9 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~   88 (380)
                      +.+++.+. .+..+|. ..+++|++|+++++. +..++.. .+..++.        |++|+++++. ++.+      +..
T Consensus        10 ~~v~c~~~-~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~-~~~~l~~--------L~~L~l~~n~-l~~~------~~~   70 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPT-GIPAQTTYLDLETNS-LKSLPNG-VFDELTS--------LTQLYLGGNK-LQSL------PNG   70 (208)
T ss_dssp             TEEECCSS-CCSSCCS-CCCTTCSEEECCSSC-CCCCCTT-TTTTCTT--------CSEEECCSSC-CCCC------CTT
T ss_pred             CEEEecCC-CccCCCC-CCCCCCcEEEcCCCc-cCcCChh-hhccccc--------CcEEECCCCc-cCcc------Chh
Confidence            34555543 4455553 346789999999987 7777765 5667777        9999998863 3333      110


Q ss_pred             ccccccCCCCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC
Q 035836           89 LESLEVGNLPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG  166 (380)
Q Consensus        89 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~  166 (380)
                          .+..++ +|++|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++..
T Consensus        71 ----~~~~l~-~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~  142 (208)
T 2o6s_A           71 ----VFNKLT-SLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDG  142 (208)
T ss_dssp             ----TTTTCT-TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT
T ss_pred             ----hcCCCC-CcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHH
Confidence                234566 69999999885 44444 44678999999999985 55555544 67789999999988 466777665


Q ss_pred             -CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC
Q 035836          167 -GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE  212 (380)
Q Consensus       167 -~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  212 (380)
                       +..+++|+.|++++|...       ..+++|+.|.++.+.....+|
T Consensus       143 ~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred             HhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence             456889999999987432       345677777777665444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.27  E-value=8.7e-12  Score=108.38  Aligned_cols=171  Identities=19%  Similarity=0.216  Sum_probs=131.0

Q ss_pred             CCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEE
Q 035836          122 NTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELT  201 (380)
Q Consensus       122 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  201 (380)
                      +.++..+++++ +.+..++ .+..+++|+.|+++++ .+..++ .+..+++|+.|++++|. +..++. +..+++|+.|+
T Consensus        18 l~~l~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcC-CCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence            44566677776 4555555 4667899999999984 677776 66778999999999864 555555 88899999999


Q ss_pred             eccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcc
Q 035836          202 IGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLT  281 (380)
Q Consensus       202 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~  281 (380)
                      +++|. ++.++.... ++|+.|++++|.... ...     +..+++|+.|++++  +.+..++. .       ..+++|+
T Consensus        92 L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~-~~~-----l~~l~~L~~L~Ls~--N~i~~~~~-l-------~~l~~L~  153 (263)
T 1xeu_A           92 VNRNR-LKNLNGIPS-ACLSRLFLDNNELRD-TDS-----LIHLKNLEILSIRN--NKLKSIVM-L-------GFLSKLE  153 (263)
T ss_dssp             CCSSC-CSCCTTCCC-SSCCEEECCSSCCSB-SGG-----GTTCTTCCEEECTT--SCCCBCGG-G-------GGCTTCC
T ss_pred             CCCCc-cCCcCcccc-CcccEEEccCCccCC-Chh-----hcCcccccEEECCC--CcCCCChH-H-------ccCCCCC
Confidence            99984 444554444 899999999986443 332     77899999999998  56766653 2       4788999


Q ss_pred             eEecccCCCccchhhhhccCCCCceEeeecCCCCcccC
Q 035836          282 SLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFP  319 (380)
Q Consensus       282 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~  319 (380)
                      +|++++ +.+..+ ..+..+++|+.|++++ +.+...+
T Consensus       154 ~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~  188 (263)
T 1xeu_A          154 VLDLHG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEP  188 (263)
T ss_dssp             EEECTT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred             EEECCC-CcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence            999999 577777 5788899999999998 4455544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.27  E-value=1.2e-10  Score=98.27  Aligned_cols=75  Identities=21%  Similarity=0.355  Sum_probs=39.7

Q ss_pred             EEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccC
Q 035836          127 TIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       127 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      .++.++ +.+..+|..+.  ++++.|++++ +.+..++. .+..+++|+.|++++|......|..+.++++|+.|++++|
T Consensus        15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTT-SCCSSCCSSCC--TTCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCC-CCcCcCCCccC--cCCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            344444 34445554432  4566666665 34444444 3344556666666665444334555666666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.26  E-value=9.3e-11  Score=99.01  Aligned_cols=131  Identities=13%  Similarity=0.174  Sum_probs=92.9

Q ss_pred             CCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC-ccCCCCCE
Q 035836           98 PPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTR  175 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~  175 (380)
                      |.+|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|++++ +.+..++... ..+++|+.
T Consensus        31 ~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           31 PETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             CTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCE
Confidence            3479999999885 44444 4678889999999998544433466678889999999988 5677777654 45788899


Q ss_pred             EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCC
Q 035836          176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNME  230 (380)
Q Consensus       176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~  230 (380)
                      |++++|......+..+..+++|+.|++++|......+. ...+++|+.|++++|..
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            99888765555566778888888888888754332222 34566677777776653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.26  E-value=8e-11  Score=107.28  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=87.4

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-cc-CCCCCcEEEccccccceeccC-CCccCCCCCEEe
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LH-NLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLD  177 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~  177 (380)
                      -+.++.+++ .+..+|..+  .+.++.|++++| .+..++.. +. .+++|+.|++++ +.+..++. .+..+++|+.|+
T Consensus        20 ~~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQ-QLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCSS-CCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCC-CcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEE
Confidence            456666665 355666544  245777888774 45544433 43 677788888877 45666654 355677777887


Q ss_pred             ccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecC
Q 035836          178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGC  256 (380)
Q Consensus       178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  256 (380)
                      +++|......+..+..+++|+.|++++|......+ ....+++|+.|+|++|.... ++......+..+++|+.|++++ 
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~-  172 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSS-  172 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCS-
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCC-
Confidence            77765333333456677777777777764332222 23455666666666654332 2221100013456666666665 


Q ss_pred             CCCCcccc
Q 035836          257 DDDMVSFP  264 (380)
Q Consensus       257 ~~~l~~~~  264 (380)
                       +.+..++
T Consensus       173 -N~l~~l~  179 (361)
T 2xot_A          173 -NKLKKLP  179 (361)
T ss_dssp             -SCCCCCC
T ss_pred             -CCCCccC
Confidence             3444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.25  E-value=1.1e-10  Score=98.61  Aligned_cols=108  Identities=17%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             CCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceec-cCCCccCC
Q 035836           95 GNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSF-TEGGLPCA  171 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~  171 (380)
                      ..++ +|++|++++|. +..+ +..+..+++|++|++++|. +..++ ..+..+++|++|++++ +.+..+ +..+..++
T Consensus        54 ~~l~-~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  129 (220)
T 2v70_A           54 KKLP-QLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLS  129 (220)
T ss_dssp             GGCT-TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCT
T ss_pred             ccCC-CCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCc
Confidence            3455 57777777764 4333 3366777777888877743 34444 3466777888888877 455555 34555677


Q ss_pred             CCCEEeccCCCCcccccccCCCCCCccEEEeccCC
Q 035836          172 KLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGV  206 (380)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  206 (380)
                      +|+.|++++|......|..+..+++|+.|++++|.
T Consensus       130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            88888888765555556677778888888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.25  E-value=1.2e-10  Score=99.04  Aligned_cols=126  Identities=21%  Similarity=0.262  Sum_probs=60.5

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCCC-ccCCCCCEEe
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLD  177 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~  177 (380)
                      +|++|++++|......+..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++... ..+++|+.|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhCeEe
Confidence            4555555554322222344455555555555552 23333322 34455555555555 3444444332 3355555555


Q ss_pred             ccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836          178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~  229 (380)
                      +++|. +..+|..+..+++|+.|++++|.. +.++.  ...+++|+.|++.+|.
T Consensus       119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          119 MCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCC
Confidence            55532 334555555555566666655532 22221  2345566666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=8.6e-12  Score=112.21  Aligned_cols=215  Identities=13%  Similarity=0.096  Sum_probs=120.0

Q ss_pred             CCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccc---cceeccC-CCccC
Q 035836           97 LPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECE---NLVSFTE-GGLPC  170 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~---~l~~l~~-~~~~~  170 (380)
                      ++ +|+++.+..  .+..++ ..|..|++|+.+++.+ +.+..++.. +..+.++..+......   ....+.. .+..|
T Consensus       100 ~~-~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A          100 KQ-TLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             CT-TCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cC-CCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence            55 588888877  355443 4677888999999887 444445433 4455556555544311   1111111 22345


Q ss_pred             CCCC-EEeccCCCCcccc-cccCCCCCCccEEEeccCCCCCCCCCC-CCCCCceEEEecCCCCcchhhhhhccccCCCCc
Q 035836          171 AKLT-RLDIYDCERLEAL-PKGLHNLTSLQELTIGKGVELPSLEED-GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS  247 (380)
Q Consensus       171 ~~L~-~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  247 (380)
                      ..|+ .+.+.....+... ...-....+++.+.+.+.-....+... ..+++|+.+++.+|. ++.++...   |.++++
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~a---F~~~~~  251 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFT---FAQKKY  251 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTT---TTTCTT
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhh---hhCCCC
Confidence            5665 4444432221111 011112345555655543111111000 125677778777654 33333222   777888


Q ss_pred             cceeeeecCCCCCcccccccccccCCCCCCCCcc-eEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC--
Q 035836          248 LRRLAISGCDDDMVSFPLEDKRLGTALPLPASLT-SLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL--  323 (380)
Q Consensus       248 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--  323 (380)
                      |+.+++.+   .++.++...      +..+++|+ .+.+.+  .++.++. .|.+|++|+.|++.+ +.++.++...+  
T Consensus       252 L~~l~l~~---ni~~I~~~a------F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~  319 (329)
T 3sb4_A          252 LLKIKLPH---NLKTIGQRV------FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGN  319 (329)
T ss_dssp             CCEEECCT---TCCEECTTT------TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCT
T ss_pred             CCEEECCc---ccceehHHH------hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcC
Confidence            88888876   266665533      46777788 888876  6666665 788888888888876 67777777655  


Q ss_pred             cccccEEE
Q 035836          324 PSSLLELW  331 (380)
Q Consensus       324 ~~~L~~L~  331 (380)
                      .++|+.|+
T Consensus       320 ~~~L~~ly  327 (329)
T 3sb4_A          320 GVPSKLIY  327 (329)
T ss_dssp             TCCCCEEE
T ss_pred             Ccchhhhc
Confidence            34666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.22  E-value=4.4e-11  Score=108.97  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=50.4

Q ss_pred             CccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceecc-CCCccCCCCCEE
Q 035836          100 SLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFT-EGGLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L  176 (380)
                      +|++|++++|. +..+ +..+..+++|++|++++| .+..++. .+..+++|+.|++++ +.+..++ ..+..+++|+.|
T Consensus        65 ~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           65 NLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEE
T ss_pred             ccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEE
Confidence            46666665553 3322 234555666666666653 3333332 344556666666655 3344432 234445566666


Q ss_pred             eccCCCCccccccc-C---CCCCCccEEEeccC
Q 035836          177 DIYDCERLEALPKG-L---HNLTSLQELTIGKG  205 (380)
Q Consensus       177 ~l~~~~~~~~~~~~-l---~~~~~L~~L~l~~~  205 (380)
                      ++++|. +..+|.. +   ..+++|+.|++++|
T Consensus       142 ~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          142 YLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             ECCSSC-CCSCCGGGTC----CTTCCEEECCSS
T ss_pred             ECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC
Confidence            666542 3333322 2   34566666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.21  E-value=2.2e-10  Score=96.63  Aligned_cols=131  Identities=13%  Similarity=0.064  Sum_probs=94.7

Q ss_pred             CCCccEEEEecCCChhhh-H-hhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCC
Q 035836           98 PPSLRSLYVSHCSKLESI-A-ERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKL  173 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L  173 (380)
                      +..+++|++++|. +..+ + ..+..+++|++|++++| .+..++. .+..+++|++|++++ +.+..++.. +..+++|
T Consensus        31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLESL  107 (220)
T ss_dssp             CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSSC
T ss_pred             CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcCC
Confidence            3357888888875 4444 2 34678889999999884 4555543 577888999999988 466666654 5567889


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCc
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEI  231 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  231 (380)
                      ++|++++|......|..+..+++|+.|++++|......+ ....+++|+.|++++|...
T Consensus       108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            999998876655556778888899999998885444333 3456788999999888644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=2.9e-13  Score=130.33  Aligned_cols=192  Identities=16%  Similarity=0.123  Sum_probs=110.2

Q ss_pred             CCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCC-------------CCCcccccccCCCCCcEEE-ccccccc
Q 035836           95 GNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCE-------------SLKILPSGLHNLRQLQKIE-IWECENL  160 (380)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~l  160 (380)
                      ...+ +|+.|++++| .++.+|..++++++|+.|+++++.             .....|..+..+++|+.|+ +.. +.+
T Consensus       346 ~~~~-~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~  422 (567)
T 1dce_A          346 ATDE-QLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYL  422 (567)
T ss_dssp             STTT-TSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHH
T ss_pred             ccCc-cceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-ccc
Confidence            3455 6999999987 478899999999999999987643             2233344455566666666 322 222


Q ss_pred             eeccCC------C--ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcc
Q 035836          161 VSFTEG------G--LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIW  232 (380)
Q Consensus       161 ~~l~~~------~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  232 (380)
                      ..++..      +  .+...|+.|++++| .++.+|. +..+++|+.|+++                       +|... 
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls-----------------------~N~l~-  476 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLS-----------------------HNRLR-  476 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECC-----------------------SSCCC-
T ss_pred             chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecC-----------------------ccccc-
Confidence            211110      0  00123555555543 2333443 4444445555444                       44322 


Q ss_pred             hhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch--hhhhccCCCCceEeee
Q 035836          233 KSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL--SSSIVDLQNLTILQLI  310 (380)
Q Consensus       233 ~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~  310 (380)
                      .++.  .  +..+++|+.|++++  +.+..++ ..       ..+++|++|++++ +.++.+  |..+..+++|+.|+++
T Consensus       477 ~lp~--~--~~~l~~L~~L~Ls~--N~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          477 ALPP--A--LAALRCLEVLQASD--NALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCCG--G--GGGCTTCCEEECCS--SCCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             ccch--h--hhcCCCCCEEECCC--CCCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEec
Confidence            1111  1  55667777777776  4555555 33       4667777777777 466666  5677777778888887


Q ss_pred             cCCCCcccCCCC-----CcccccEEE
Q 035836          311 DCPKLKYFPEKG-----LPSSLLELW  331 (380)
Q Consensus       311 ~c~~l~~~~~~~-----~~~~L~~L~  331 (380)
                      + +.++.++...     ..++|+.|+
T Consensus       542 ~-N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          542 G-NSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             T-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             C-CcCCCCccHHHHHHHHCcccCccC
Confidence            7 4566655421     135666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=1.2e-10  Score=104.66  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=75.1

Q ss_pred             CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCc-eEeeecCCCCcccCCC
Q 035836          244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLT-ILQLIDCPKLKYFPEK  321 (380)
Q Consensus       244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~  321 (380)
                      .+++|+.+++.+  +.++.++...      +..+++|+.+++.+  +++.++. .|.+|++|+ .+.+.+  .++.++..
T Consensus       224 ~~~~L~~l~L~~--n~i~~I~~~a------F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          224 YMPNLVSLDISK--TNATTIPDFT------FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             HCTTCCEEECTT--BCCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             hcCCCeEEECCC--CCcceecHhh------hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence            378999999997  4677887643      47889999999987  4888877 899999999 999986  78889887


Q ss_pred             CC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeE
Q 035836          322 GL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVS  360 (380)
Q Consensus       322 ~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~  360 (380)
                      .+  .++|+.+++.++.     +...+...|...+.+..++
T Consensus       292 aF~~c~~L~~l~l~~n~-----i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGDK-----ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTEEEEEECSSC-----CCEECTTTTCTTCCCCEEE
T ss_pred             hhhCCccCCEEEeCCCc-----cCccchhhhcCCcchhhhc
Confidence            76  5689999986522     2223444555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.18  E-value=1.7e-10  Score=92.95  Aligned_cols=134  Identities=19%  Similarity=0.153  Sum_probs=80.7

Q ss_pred             CCCCEEeccCCCCc-ccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          171 AKLTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       171 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      ++|++|++++|... ..+|..+..+++|+.|++++|. ++.+.....+++|+.|++++|......+. .   +..+++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~---~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDM-L---AEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCH-H---HHHCTTCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHH-H---HhhCCCCC
Confidence            35555555554322 2445445555666666666654 22223444556666666666654332221 1   44578888


Q ss_pred             eeeeecCCCCCcccc--cccccccCCCCCCCCcceEecccCCCccchhh----hhccCCCCceEeeecCCCCcccCC
Q 035836          250 RLAISGCDDDMVSFP--LEDKRLGTALPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      .|++++  +.+..++  ...       ..+++|++|++++ +.+..++.    .+..+++|++|++++| .++.+|.
T Consensus        99 ~L~Ls~--N~l~~~~~~~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A           99 HLNLSG--NKLKDISTLEPL-------KKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             EEECBS--SSCCSSGGGGGG-------SSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             EEeccC--CccCcchhHHHH-------hcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            888887  3555554  223       4678888888888 46666664    6788899999999885 4555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=1.4e-10  Score=93.45  Aligned_cols=128  Identities=16%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCccEEeecCCCCC-CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEE
Q 035836          123 TSLETIDISNCESL-KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELT  201 (380)
Q Consensus       123 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  201 (380)
                      ++|++|++++|... ..+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44444444443221 133433344444444444442 23333 3333344444444444433222333333344555555


Q ss_pred             eccCCCCCCC---CCCCCCCCceEEEecCCCCcchhh-hhhccccCCCCccceeeeec
Q 035836          202 IGKGVELPSL---EEDGLPTNLHSLEIDGNMEIWKST-IEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       202 l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~  255 (380)
                      +++|.. +.+   .....+++|+.|++++|....... ....  +..+++|+.|++++
T Consensus       102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~~  156 (168)
T 2ell_A          102 LSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV--FKLLPQLTYLDGYD  156 (168)
T ss_dssp             CBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH--HTTCSSCCEETTEE
T ss_pred             ccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH--HHhCccCcEecCCC
Confidence            554422 211   112334444444444443221111 0001  45566666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.14  E-value=7.7e-09  Score=95.20  Aligned_cols=210  Identities=12%  Similarity=0.132  Sum_probs=126.6

Q ss_pred             CccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEe
Q 035836          100 SLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLD  177 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~  177 (380)
                      +|+.+.+..  .+..+. ..|..|++|+.+++.. +.+..++.....+.+|+.+.+..  .+..+... +..|++|+.+.
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence            477777764  244333 3566777777777776 45666665555567777777753  35665553 34567777777


Q ss_pred             ccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCc----chhhhhhccccCCCCccce
Q 035836          178 IYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEI----WKSTIEWGRGFHRFSSLRR  250 (380)
Q Consensus       178 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~L~~  250 (380)
                      +..+  ++.++ .+|.+ .+|+.+.+...  ++.++  ....+++|+.+.+.++...    ..+... .  |.+|++|+.
T Consensus       233 l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-a--F~~c~~L~~  304 (401)
T 4fdw_A          233 IPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-C--LEGCPKLAR  304 (401)
T ss_dssp             CCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT-T--TTTCTTCCE
T ss_pred             cCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH-H--hhCCccCCe
Confidence            7652  44444 24444 57777777542  33332  3356777888777665432    111111 1  777788888


Q ss_pred             eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC---ccc
Q 035836          251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL---PSS  326 (380)
Q Consensus       251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~~  326 (380)
                      +.+..   .++.+....      +..+++|+.+.+..  +++.+.. .|.++ +|+.+.+.+ +.+..++...+   +..
T Consensus       305 l~l~~---~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~  371 (401)
T 4fdw_A          305 FEIPE---SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDD  371 (401)
T ss_dssp             ECCCT---TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTT
T ss_pred             EEeCC---ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCC
Confidence            87764   355555432      45667788888754  4666655 67777 888888877 45555555433   346


Q ss_pred             ccEEEecCc
Q 035836          327 LLELWIWDC  335 (380)
Q Consensus       327 L~~L~l~~c  335 (380)
                      +..|.+-..
T Consensus       372 l~~l~vp~~  380 (401)
T 4fdw_A          372 ITVIRVPAE  380 (401)
T ss_dssp             CCEEEECGG
T ss_pred             ccEEEeCHH
Confidence            777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.10  E-value=3.6e-10  Score=89.12  Aligned_cols=125  Identities=17%  Similarity=0.096  Sum_probs=68.4

Q ss_pred             CCCCEEeccCCCCc-ccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          171 AKLTRLDIYDCERL-EALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       171 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      ++++.|++++|... ..+|..+..+++|+.|++++|.. +.+.....+++|+.|++++|......+. .   +..+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~---~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSDNRVSGGLEV-L---AEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC-CCCTTCCCCTTCCEEECCSSCCCSCTHH-H---HHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC-CCchhhhcCCCCCEEECCCCcccchHHH-H---hhhCCCCC
Confidence            35666666655432 25555555666666666666532 2223344555666666666553332221 1   33466777


Q ss_pred             eeeeecCCCCCcccc--cccccccCCCCCCCCcceEecccCCCccchhh----hhccCCCCceEeee
Q 035836          250 RLAISGCDDDMVSFP--LEDKRLGTALPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILQLI  310 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~  310 (380)
                      .|++++  +.+..++  ...       ..+++|++|++++ +.++.++.    .+..+++|++|+++
T Consensus        92 ~L~ls~--N~i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSG--NKIKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTT--SCCCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCC--CcCCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence            777776  3344433  222       3566777777776 35555543    56667777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.10  E-value=7.2e-09  Score=95.39  Aligned_cols=256  Identities=12%  Similarity=0.125  Sum_probs=167.7

Q ss_pred             CCccEEEEecCCCCccccCCCC-CCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCC
Q 035836            6 SSLEILEIWVCHSLTYIAGVQL-PPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNE   84 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   84 (380)
                      ..++.+.+-+  .++.++..+. -.+|+.+.+...  ++.++.. .|.++ .        |+++.+..  .++.+     
T Consensus       113 ~~l~~i~ip~--~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~-aF~~~-~--------L~~i~lp~--~l~~I-----  171 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDM-AFFNS-T--------VQEIVFPS--TLEQL-----  171 (401)
T ss_dssp             SSCSEEECCT--TCCEECTTTTTTCCCSEEECCTT--CCEECTT-TTTTC-C--------CCEEECCT--TCCEE-----
T ss_pred             CCccEEEECC--ccCEehHhhcccCCccEEEeCCC--ccEECHH-hcCCC-C--------ceEEEeCC--CccEe-----
Confidence            4455555543  4555554221 236888887543  6777765 44443 4        88888864  44443     


Q ss_pred             CCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceec
Q 035836           85 LPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSF  163 (380)
Q Consensus        85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l  163 (380)
                           +.-.+..++ +|+.+++..+. +..++...-.+.+|+.+.+..  .+..++.. +.++++|+.+.+..  .+..+
T Consensus       172 -----~~~aF~~c~-~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I  240 (401)
T 4fdw_A          172 -----KEDIFYYCY-NLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTI  240 (401)
T ss_dssp             -----CSSTTTTCT-TCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEE
T ss_pred             -----hHHHhhCcc-cCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCc
Confidence                 111345556 69999998763 665655444468999999974  36666544 56789999999975  46777


Q ss_pred             cCCCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCC----CCCC--CCCCCCCceEEEecCCCCcchhhh
Q 035836          164 TEGGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVEL----PSLE--EDGLPTNLHSLEIDGNMEIWKSTI  236 (380)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~----~~~~--~~~~~~~L~~L~l~~~~~~~~~~~  236 (380)
                      ....+...+|+.+.+..  .++.++ .+|.++++|+.+.+.++...    ..++  ....+++|+.+.+.+.  +..+..
T Consensus       241 ~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~  316 (401)
T 4fdw_A          241 GQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ  316 (401)
T ss_dssp             CTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT
T ss_pred             cccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh
Confidence            77655557899999864  355554 57889999999999875432    1122  3467889999998853  444433


Q ss_pred             hhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCC-CCceEeeec
Q 035836          237 EWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQ-NLTILQLID  311 (380)
Q Consensus       237 ~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~-~L~~L~l~~  311 (380)
                      ..   |.+|++|+.+.+..   .+..+....      +..+ +|+.+++.+ +.+..++. .+.+++ +++.|.+-.
T Consensus       317 ~a---F~~c~~L~~l~lp~---~l~~I~~~a------F~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          317 GL---LGGNRKVTQLTIPA---NVTQINFSA------FNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             TT---TTTCCSCCEEEECT---TCCEECTTS------SSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             hh---hcCCCCccEEEECc---cccEEcHHh------CCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence            22   88899999999965   366665432      4567 899999988 45555554 666664 677777754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=2.7e-10  Score=89.78  Aligned_cols=83  Identities=20%  Similarity=0.329  Sum_probs=44.3

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc--ccccCCCCCcEEEccccccceeccC----CC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP--SGLHNLRQLQKIEIWECENLVSFTE----GG  167 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~----~~  167 (380)
                      +..++ +|++|++++|.....+|..+..+++|++|++++| .+..++  ..+..+++|++|+++++ .+..++.    .+
T Consensus        60 ~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~  136 (149)
T 2je0_A           60 LPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVF  136 (149)
T ss_dssp             CCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHH
T ss_pred             hhcCC-CCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHH
Confidence            34444 4666666666432235555555666666666663 333332  44555666666666663 4444443    23


Q ss_pred             ccCCCCCEEecc
Q 035836          168 LPCAKLTRLDIY  179 (380)
Q Consensus       168 ~~~~~L~~L~l~  179 (380)
                      ..+++|+.|+++
T Consensus       137 ~~l~~L~~L~l~  148 (149)
T 2je0_A          137 KLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEETTB
T ss_pred             HHCCCcccccCC
Confidence            345556665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.01  E-value=2.4e-09  Score=88.20  Aligned_cols=104  Identities=17%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             CccEEEEecCCChhhhHh--hccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEE
Q 035836          100 SLRSLYVSHCSKLESIAE--RLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L  176 (380)
                      ++++|++++|. +..++.  .+..+++|++|++++|......|..+..+++|++|++++ +.+..++.. +..+++|++|
T Consensus        30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEE
Confidence            57777777764 444443  266777777777777443333355566677777777776 455555443 4456667777


Q ss_pred             eccCCCCcccccccCCCCCCccEEEeccC
Q 035836          177 DIYDCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       177 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      ++++|......|..+..+++|+.|++++|
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            77766554444555666666666666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.99  E-value=4.5e-08  Score=90.10  Aligned_cols=289  Identities=15%  Similarity=0.121  Sum_probs=146.9

Q ss_pred             CCCCCCccEEEEecCCCCccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI   79 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   79 (380)
                      |.++.+|+.+.|..  .++.+..  +..|++|+.+++..  +++.++.. .|.++..        |+.+.+..  .+..+
T Consensus        67 F~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~-aF~~c~~--------L~~i~~p~--~l~~i  131 (394)
T 4fs7_A           67 FQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRC-TFSGCYA--------LKSILLPL--MLKSI  131 (394)
T ss_dssp             TTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT-TTTTCTT--------CCCCCCCT--TCCEE
T ss_pred             hhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccch-hhccccc--------chhhcccC--ceeee
Confidence            45667777777753  4666655  33467777777753  25555555 5555655        65555432  11111


Q ss_pred             ccc----C-----CCC---ccccccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccc-cccC
Q 035836           80 FSK----N-----ELP---ATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPS-GLHN  145 (380)
Q Consensus        80 ~~~----~-----~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~  145 (380)
                      ...    .     .++   ..+....+.... +|+.+.+..+  +..+ ...+..+.+|+.+.+..+  +..+.. .+.+
T Consensus       132 ~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~-~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~  206 (394)
T 4fs7_A          132 GVEAFKGCDFKEITIPEGVTVIGDEAFATCE-SLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE  206 (394)
T ss_dssp             CTTTTTTCCCSEEECCTTCCEECTTTTTTCT-TCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred             cceeeecccccccccCccccccchhhhcccC-CCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcc
Confidence            000    0     000   000110122222 3555554432  1111 123444455555544431  222221 1333


Q ss_pred             CCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEE
Q 035836          146 LRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLE  224 (380)
Q Consensus       146 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  224 (380)
                      +..|+.+.+..  ....+......+.+|+.+.+...  ...+. ..+..+..++.+.+..+...-.......+..++.+.
T Consensus       207 ~~~L~~i~~~~--~~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          207 CILLENMEFPN--SLYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             CTTCCBCCCCT--TCCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred             ccccceeecCC--CceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceec
Confidence            44444444432  12222233333445666655431  22222 345566677777766432211112234556666666


Q ss_pred             ecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCC
Q 035836          225 IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQN  303 (380)
Q Consensus       225 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~  303 (380)
                      ..... +   . ...  +..+.+|+.+.+..   .++.+....      +..+.+|+.+.+..  .++.+.. .|.+|.+
T Consensus       283 ~~~~~-i---~-~~~--F~~~~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          283 YGSVI-V---P-EKT--FYGCSSLTEVKLLD---SVKFIGEEA------FESCTSLVSIDLPY--LVEEIGKRSFRGCTS  344 (394)
T ss_dssp             ECSSE-E---C-TTT--TTTCTTCCEEEECT---TCCEECTTT------TTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred             cCcee-e---c-ccc--cccccccccccccc---ccceechhh------hcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence            54431 1   1 111  66778888888864   355555432      45778899888864  5677765 7888999


Q ss_pred             CceEeeecCCCCcccCCCCC--cccccEEEecC
Q 035836          304 LTILQLIDCPKLKYFPEKGL--PSSLLELWIWD  334 (380)
Q Consensus       304 L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~  334 (380)
                      |+.+.+..  .++.++..++  ..+|+.+++..
T Consensus       345 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          345 LSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence            99998864  3788877666  46888888864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.96  E-value=7e-09  Score=85.47  Aligned_cols=102  Identities=22%  Similarity=0.311  Sum_probs=54.1

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccC-CCccCCCCCEEe
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLD  177 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~  177 (380)
                      +|++|++++|. +..+|..+..+++|++|++++| .+..++ ..+..+++|++|++++ +.+..++. .+..+++|+.|+
T Consensus        32 ~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEE
Confidence            57777777663 4556666666677777777663 333333 3355566666666666 34444443 233455555555


Q ss_pred             ccCCCCccccc-ccCCCCCCccEEEeccC
Q 035836          178 IYDCERLEALP-KGLHNLTSLQELTIGKG  205 (380)
Q Consensus       178 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~  205 (380)
                      +++|... .++ ..+..+++|+.|++++|
T Consensus       109 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          109 LHGNDIS-VVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence            5554322 222 23444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.95  E-value=8.2e-10  Score=89.69  Aligned_cols=129  Identities=15%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEE
Q 035836           26 QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLY  105 (380)
Q Consensus        26 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~  105 (380)
                      ..+++|++|+++++. +..++.  .....+.        |+.|+++++. ++.+          +  .+..++ +|++|+
T Consensus        16 ~~~~~L~~L~l~~n~-l~~i~~--~~~~~~~--------L~~L~Ls~N~-l~~~----------~--~l~~l~-~L~~L~   70 (176)
T 1a9n_A           16 TNAVRDRELDLRGYK-IPVIEN--LGATLDQ--------FDAIDFSDNE-IRKL----------D--GFPLLR-RLKTLL   70 (176)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCC--GGGGTTC--------CSEEECCSSC-CCEE----------C--CCCCCS-SCCEEE
T ss_pred             CCcCCceEEEeeCCC-CchhHH--hhhcCCC--------CCEEECCCCC-CCcc----------c--ccccCC-CCCEEE
Confidence            345667777777665 554431  1122224        6666666653 2222          0  344455 467777


Q ss_pred             EecCCChhhhHhh-ccCCCCccEEeecCCCCCCcccc--cccCCCCCcEEEccccccceeccCC----CccCCCCCEEec
Q 035836          106 VSHCSKLESIAER-LDNNTSLETIDISNCESLKILPS--GLHNLRQLQKIEIWECENLVSFTEG----GLPCAKLTRLDI  178 (380)
Q Consensus       106 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~L~~L~l  178 (380)
                      +++|. +..+|.. +..+++|++|++++| .+..+|.  .+..+++|+.|+++++ .+..++..    +..+++|+.|++
T Consensus        71 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           71 VNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             CCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             CCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence            76664 4444432 356666777777663 4455554  4556666666666663 44444442    344566666666


Q ss_pred             cCCC
Q 035836          179 YDCE  182 (380)
Q Consensus       179 ~~~~  182 (380)
                      ++|.
T Consensus       148 ~~n~  151 (176)
T 1a9n_A          148 QKVK  151 (176)
T ss_dssp             EECC
T ss_pred             CcCC
Confidence            5543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.94  E-value=7.4e-09  Score=85.28  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=77.7

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc--ccCCCCCcEEEccccccceec-cCCCccCCCCCEEe
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG--LHNLRQLQKIEIWECENLVSF-TEGGLPCAKLTRLD  177 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~  177 (380)
                      -++++++++. ++.+|..+.  .+|++|++++| .+..++..  +..+++|++|++++ +.+..+ +..+..+++|++|+
T Consensus        10 ~~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRG-LKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCC-cCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEE
Confidence            3566666653 555665443  37788888874 45555432  66778888888877 455555 44556677788888


Q ss_pred             ccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCC
Q 035836          178 IYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNME  230 (380)
Q Consensus       178 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  230 (380)
                      +++|......+..+..+++|+.|++++|......+ ....+++|+.|++++|..
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            87765544444556777777777777774433323 224556666666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.92  E-value=2.7e-09  Score=86.55  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=15.2

Q ss_pred             CCCcceEecccCCCccchhh--hhccCCCCceEeeec
Q 035836          277 PASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLID  311 (380)
Q Consensus       277 ~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~  311 (380)
                      +++|++|++++ +.+..++.  .+..+++|++|++++
T Consensus        87 l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           87 LPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             CTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             CCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC
Confidence            34444444444 23444443  344444555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.92  E-value=2e-09  Score=106.87  Aligned_cols=109  Identities=21%  Similarity=0.245  Sum_probs=73.2

Q ss_pred             cCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836           94 VGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      +..++ +|+.|++++|. +..+|..+..+++|++|++++| .+..+|..+.++++|++|++++ +.+..+|..+..+++|
T Consensus       220 ~~~l~-~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          220 KYDDQ-LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQL  295 (727)
T ss_dssp             --CCC-CCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTC
T ss_pred             hccCC-CCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCC
Confidence            34445 57777777764 4466666667777777777774 4446776677777777777777 4566777767677777


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCC
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVE  207 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  207 (380)
                      +.|++++| .++.+|..+..+++|+.|+|++|..
T Consensus       296 ~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          296 KYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence            77777765 3456676677777777777777643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.91  E-value=1.2e-08  Score=83.99  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccC
Q 035836          102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYD  180 (380)
Q Consensus       102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~  180 (380)
                      +.++++++ .+..+|..+  .++|++|++++ +.+..+|..+..+++|+.|++++ +.+..++. .+..+++|++|++++
T Consensus        13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTS-CCSSCCSCC--CTTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCC-CCCcCCCCC--CCCCCEEECCC-CcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC
Confidence            45566554 355565544  35788888887 45567777777788888888887 45666654 355677888888887


Q ss_pred             CCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836          181 CERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       181 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~  229 (380)
                      |......+..+..+++|+.|++++|.. +.++.  ...+++|+.|++++|.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCC
Confidence            654444445677777888888887743 33332  2345666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.88  E-value=1.3e-09  Score=108.27  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             cccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCC
Q 035836          140 PSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPT  218 (380)
Q Consensus       140 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~  218 (380)
                      +..+..+++|+.|++++ +.+..++..+..+++|+.|++++|. ++.+|..+..+++|+.|+|++|... .+|. ...++
T Consensus       217 ~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            44455666677777766 3455666656666677777777653 3366666666667777777766432 3332 23445


Q ss_pred             CceEEEecCCCCcchhhhhhccccCCCCccceeeeec
Q 035836          219 NLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISG  255 (380)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  255 (380)
                      +|+.|+|++|.. ..++.  .  +..+++|+.|++++
T Consensus       294 ~L~~L~L~~N~l-~~lp~--~--~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          294 QLKYFYFFDNMV-TTLPW--E--FGNLCNLQFLGVEG  325 (727)
T ss_dssp             TCSEEECCSSCC-CCCCS--S--TTSCTTCCCEECTT
T ss_pred             CCCEEECCCCCC-CccCh--h--hhcCCCccEEeCCC
Confidence            555555555532 22211  1  55666777777766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.87  E-value=4.2e-09  Score=101.41  Aligned_cols=208  Identities=17%  Similarity=0.150  Sum_probs=130.6

Q ss_pred             CCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccc---cccCCCCccccccccCCCCCCcc
Q 035836           26 QLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCI---FSKNELPATLESLEVGNLPPSLR  102 (380)
Q Consensus        26 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~L~  102 (380)
                      ..+++|+.|+++++. ++.+|.+  +..+..        |+.|+++++..+...   .......+..+. .+..++ +|+
T Consensus       346 ~~~~~L~~L~Ls~n~-L~~Lp~~--i~~l~~--------L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~-~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-STVLQSE--LESCKE--------LQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFS-TLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHH-HHHHHHH--HHHHHH--------HHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHH-HHH
T ss_pred             ccCccceeccCChhh-HHhhHHH--HHHHHH--------HHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHH-hcc
Confidence            446778888888876 7777765  566666        888887543211000   000000111111 123344 477


Q ss_pred             EEE-EecCCChhhhHh------hcc--CCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC
Q 035836          103 SLY-VSHCSKLESIAE------RLD--NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL  173 (380)
Q Consensus       103 ~L~-l~~~~~~~~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L  173 (380)
                      .|+ ++.+ .+..++.      .+.  ....|++|++++ +.+..+|. +..+++|+.|++++ +.+..+|..+..+++|
T Consensus       413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L  488 (567)
T 1dce_A          413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCL  488 (567)
T ss_dssp             HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTC
T ss_pred             cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecC-CCCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCC
Confidence            776 3332 1221111      010  113689999998 46666776 88899999999998 5777888888889999


Q ss_pred             CEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCC-C-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCcccee
Q 035836          174 TRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSL-E-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRL  251 (380)
Q Consensus       174 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L  251 (380)
                      +.|++++|. ++.+| .+..+++|+.|++++|...... | ....+++|+.|++++|......+ .....+..+++|+.|
T Consensus       489 ~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          489 EVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSI  565 (567)
T ss_dssp             CEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEE
T ss_pred             CEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCcc
Confidence            999999864 44577 7888999999999998554432 3 34678999999999987443322 111013347888888


Q ss_pred             ee
Q 035836          252 AI  253 (380)
Q Consensus       252 ~l  253 (380)
                      ++
T Consensus       566 ~l  567 (567)
T 1dce_A          566 LT  567 (567)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.85  E-value=3.1e-08  Score=80.29  Aligned_cols=79  Identities=24%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             CccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCCCEE
Q 035836          100 SLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L  176 (380)
                      +|++|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|++|++++ +.+..++.. +..+++|+.|
T Consensus        29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEE
Confidence            46666666553 33332 23455555666665553 33333322 34455555555554 233333332 2233444444


Q ss_pred             eccCC
Q 035836          177 DIYDC  181 (380)
Q Consensus       177 ~l~~~  181 (380)
                      ++++|
T Consensus       106 ~l~~N  110 (177)
T 2o6r_A          106 ALDTN  110 (177)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            44443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.82  E-value=4.7e-08  Score=79.22  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=70.9

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCCCCEEec
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDI  178 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l  178 (380)
                      .+.++++++. +..+|..+  .++|++|++++|. +..++. .+..+++|++|++++ +.+..++.. +..+++|+.|++
T Consensus         9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEEC
Confidence            4556665553 44555433  3577888887743 444443 346677788888777 456666554 345677777777


Q ss_pred             cCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836          179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~  229 (380)
                      ++|......+..+..+++|+.|++++|.. +.++.  ...+++|+.|++++|.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence            77543333333456667777777776633 33332  1335556666665554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.73  E-value=3.1e-06  Score=77.78  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             CCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch
Q 035836          215 GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL  294 (380)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  294 (380)
                      ..+..|+.+.+......  +.. ..  |.++++|+.+.+..   .+..++...      +..+.+|+.+.+..  .++.+
T Consensus       262 ~~c~~L~~i~lp~~~~~--I~~-~a--F~~c~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I  325 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVS--IGT-GA--FMNCPALQDIEFSS---RITELPESV------FAGCISLKSIDIPE--GITQI  325 (394)
T ss_dssp             TTCSSCCEEECCTTCCE--ECT-TT--TTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCEEECCT--TCCEE
T ss_pred             eecccccEEecccccce--ecC-cc--cccccccccccCCC---cccccCcee------ecCCCCcCEEEeCC--cccEe
Confidence            34566777766543221  111 11  66777888777754   455555432      46778888888864  56666


Q ss_pred             hh-hhccCCCCceEeeecCCCCcccCCCCC--cccccEEEecCch
Q 035836          295 SS-SIVDLQNLTILQLIDCPKLKYFPEKGL--PSSLLELWIWDCP  336 (380)
Q Consensus       295 ~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  336 (380)
                      .. .|.+|.+|+++.+-  ..++.++..++  .++|+.+++.+..
T Consensus       326 ~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             hHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEEEECCce
Confidence            65 78888889988885  35777777655  4688888888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.71  E-value=2.2e-06  Score=78.72  Aligned_cols=289  Identities=17%  Similarity=0.142  Sum_probs=147.0

Q ss_pred             CccccC--CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCC
Q 035836           19 LTYIAG--VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGN   96 (380)
Q Consensus        19 ~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~   96 (380)
                      ++++..  +..|.+|+++.+..  +++.++.. .|.++..        |+++++..  +++.+...          .+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~-aF~~c~~--------L~~i~lp~--~l~~I~~~----------aF~~  115 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEF-AFENCSK--------LEIINIPD--SVKMIGRC----------TFSG  115 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT--TCCEECTT-TTTTCTT--------CCEECCCT--TCCEECTT----------TTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC--CccCcchh-HhhCCCC--------CcEEEeCC--CceEccch----------hhcc
Confidence            344544  34578999999853  47788776 7888888        99998864  23332000          1222


Q ss_pred             CCCCccEEEEecC--------------------CChhh-hHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEc
Q 035836           97 LPPSLRSLYVSHC--------------------SKLES-IAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEI  154 (380)
Q Consensus        97 ~~~~L~~L~l~~~--------------------~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l  154 (380)
                      .. +|+.+.+..+                    ..... -...+.++.+|+.+.+..  .+..++.. +.++.+|+.+.+
T Consensus       116 c~-~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l  192 (394)
T 4fs7_A          116 CY-ALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKL  192 (394)
T ss_dssp             CT-TCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCC
T ss_pred             cc-cchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEc
Confidence            22 2333333221                    00110 112344455555555543  12222222 334455555554


Q ss_pred             cccccceeccC-CCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcch
Q 035836          155 WECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWK  233 (380)
Q Consensus       155 ~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  233 (380)
                      ..  .++.+.. .+..+..|+.+.+..+  ...+.......++|+.+.+......-.......+..++.+.+..+...  
T Consensus       193 ~~--~~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--  266 (394)
T 4fs7_A          193 PR--NLKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--  266 (394)
T ss_dssp             CT--TCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--
T ss_pred             CC--CceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce--
Confidence            32  2333333 2233445555444332  122222223344566655543211001112244566666666554221  


Q ss_pred             hhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836          234 STIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC  312 (380)
Q Consensus       234 ~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  312 (380)
                      +... .  +..+..++.+....  .   .++.      .++..+.+|+.+.+..  .++.++. .|.+|.+|+.+++.  
T Consensus       267 i~~~-~--F~~~~~l~~~~~~~--~---~i~~------~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--  328 (394)
T 4fs7_A          267 IGGS-L--FYNCSGLKKVIYGS--V---IVPE------KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--  328 (394)
T ss_dssp             ECSC-T--TTTCTTCCEEEECS--S---EECT------TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--
T ss_pred             eecc-c--cccccccceeccCc--e---eecc------cccccccccccccccc--ccceechhhhcCCCCCCEEEeC--
Confidence            1111 1  55566666655543  1   1221      2235678899988865  5777766 78899999999996  


Q ss_pred             CCCcccCCCCC--cccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECc
Q 035836          313 PKLKYFPEKGL--PSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDY  363 (380)
Q Consensus       313 ~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~  363 (380)
                      ..++.++..++  ..+|+.+.+...  ++    ..+...|.....+..+.++.
T Consensus       329 ~~v~~I~~~aF~~c~~L~~i~lp~~--l~----~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          329 YLVEEIGKRSFRGCTSLSNINFPLS--LR----KIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEECCCTT--CC----EECTTTBTTCTTCCEEEEEG
T ss_pred             CcccEEhHHhccCCCCCCEEEECcc--cc----EehHHHhhCCCCCCEEEECC
Confidence            45888887766  468888887542  22    23344555556666666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.68  E-value=2e-10  Score=95.21  Aligned_cols=124  Identities=14%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             CccEEEEecC-CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEec
Q 035836          100 SLRSLYVSHC-SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDI  178 (380)
Q Consensus       100 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  178 (380)
                      .++...+.++ +.++.+|..+..+++|++|++++| .+..+| .+..+++|+.|++++ +.+..++..+..+++|+.|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEEC
Confidence            3566666554 235566667777888888888874 455566 667778888888887 456666654444567888888


Q ss_pred             cCCCCcccccccCCCCCCccEEEeccCCCCCCCC---CCCCCCCceEEEecCCC
Q 035836          179 YDCERLEALPKGLHNLTSLQELTIGKGVELPSLE---EDGLPTNLHSLEIDGNM  229 (380)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~  229 (380)
                      ++|. +..+| .+..+++|+.|++++|.. +.++   ....+++|+.|++++|.
T Consensus       101 ~~N~-l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          101 SYNQ-IASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEE-CCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cCCc-CCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence            7753 33444 455666777777776632 2211   12345556666665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.63  E-value=1.7e-10  Score=95.70  Aligned_cols=130  Identities=17%  Similarity=0.150  Sum_probs=75.2

Q ss_pred             CcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCC
Q 035836          137 KILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGL  216 (380)
Q Consensus       137 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  216 (380)
                      ..+|..+..+++|++|++++ +.+..++ .+..+++|+.|++++|. +..+|..+..+++|+.|++++|.. +.+     
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l-~~l-----  108 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASL-----  108 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC-CCH-----
T ss_pred             hhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC-CcC-----
Confidence            34444677788888888877 3566665 55556777777777653 334554444445566666665521 111     


Q ss_pred             CCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccc--ccccccCCCCCCCCcceEecccCCCccch
Q 035836          217 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPL--EDKRLGTALPLPASLTSLWIEDFPNLERL  294 (380)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  294 (380)
                                        +.     +..+++|+.|++++  +.+..++.  ..       ..+++|++|+++++ .+...
T Consensus       109 ------------------~~-----~~~l~~L~~L~l~~--N~i~~~~~~~~l-------~~l~~L~~L~l~~N-~l~~~  155 (198)
T 1ds9_A          109 ------------------SG-----IEKLVNLRVLYMSN--NKITNWGEIDKL-------AALDKLEDLLLAGN-PLYND  155 (198)
T ss_dssp             ------------------HH-----HHHHHHSSEEEESE--EECCCHHHHHHH-------TTTTTCSEEEECSC-HHHHH
T ss_pred             ------------------Cc-----cccCCCCCEEECCC--CcCCchhHHHHH-------hcCCCCCEEEecCC-ccccc
Confidence                              11     34556667777766  34444332  22       35667777777763 33322


Q ss_pred             ----------hh-hhccCCCCceEe
Q 035836          295 ----------SS-SIVDLQNLTILQ  308 (380)
Q Consensus       295 ----------~~-~~~~~~~L~~L~  308 (380)
                                +. .+..+++|++|+
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          156 YKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cccccchHHHHHHHHHhCCCcEEEC
Confidence                      11 477888888887

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.62  E-value=1.4e-07  Score=75.88  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=15.4

Q ss_pred             ccCCCCCcEEEccccccceeccCCC-ccCCCCCEEeccC
Q 035836          143 LHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYD  180 (380)
Q Consensus       143 ~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~  180 (380)
                      +..+++|++|++++ +.+..++... ..+++|++|++++
T Consensus        50 ~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           50 FDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCC
Confidence            34444444444444 2333333322 2344444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.62  E-value=1.6e-07  Score=75.81  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCC-ccCCCCCEEeccCCCCcccccc-cCCCCCCccEE
Q 035836          123 TSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGG-LPCAKLTRLDIYDCERLEALPK-GLHNLTSLQEL  200 (380)
Q Consensus       123 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L  200 (380)
                      ++|++|++++|......|..+..+++|++|++++ +.+..++... ..+++|+.|++++|.. ..+|. .+..+++|+.|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEE
Confidence            3444444444222221123334444444444444 2344443332 2344444444444322 22222 23444444444


Q ss_pred             EeccC
Q 035836          201 TIGKG  205 (380)
Q Consensus       201 ~l~~~  205 (380)
                      ++++|
T Consensus       111 ~L~~N  115 (174)
T 2r9u_A          111 YLYNN  115 (174)
T ss_dssp             ECCSS
T ss_pred             EeCCC
Confidence            44443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.61  E-value=6.8e-06  Score=75.48  Aligned_cols=264  Identities=15%  Similarity=0.153  Sum_probs=145.7

Q ss_pred             CCCCC-CccEEEEecCCCCccccC--CCCCCCCceEeecCC--cCccccccccceecCCCCccccccccceeEeecCCCc
Q 035836            2 CDTNS-SLEILEIWVCHSLTYIAG--VQLPPSLKQLRISDC--DNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSL   76 (380)
Q Consensus         2 ~~~~~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l   76 (380)
                      |..+. .|+.+.|-.  .++.+..  +..|.+|+++.+...  .+++.++.. .|..+..        |+.+.+..  ++
T Consensus        59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~--------L~~i~~~~--~~  125 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSE--------LTDIPILD--SV  125 (394)
T ss_dssp             TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT-TTTTCTT--------CCBCGGGT--TC
T ss_pred             ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechh-hchhccc--------ceeeccCC--cc
Confidence            44453 589998864  5777776  445899999998654  346777766 6666666        66665542  23


Q ss_pred             ccccccCCCCccccccccCCCCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEcc
Q 035836           77 TCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIW  155 (380)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  155 (380)
                      +.+          +.-.+.... +|+.+.+...  +..+ ...+..+.+|+.+.+..  .+..+........+|+.+.+.
T Consensus       126 ~~I----------~~~aF~~c~-~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip  190 (394)
T 4gt6_A          126 TEI----------DSEAFHHCE-ELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIP  190 (394)
T ss_dssp             SEE----------CTTTTTTCT-TCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEEC
T ss_pred             cee----------hhhhhhhhc-ccccccccce--eeeecccceecccccccccccc--eeeEeccccccccceeEEEEC
Confidence            222          000223333 4666666532  2222 22445566666666543  233333332233344444443


Q ss_pred             ccccceeccC-CCccCCCCCEEeccC--------------------------C---------CCccccc-ccCCCCCCcc
Q 035836          156 ECENLVSFTE-GGLPCAKLTRLDIYD--------------------------C---------ERLEALP-KGLHNLTSLQ  198 (380)
Q Consensus       156 ~~~~l~~l~~-~~~~~~~L~~L~l~~--------------------------~---------~~~~~~~-~~l~~~~~L~  198 (380)
                      .  .+..+.. .+..|.+++......                          +         ..+..+. .++.++++|+
T Consensus       191 ~--~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~  268 (394)
T 4gt6_A          191 A--KVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLA  268 (394)
T ss_dssp             T--TCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCC
T ss_pred             C--cccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeeccccc
Confidence            2  1111111 111122222221110                          0         0111221 3567788888


Q ss_pred             EEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCC
Q 035836          199 ELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPA  278 (380)
Q Consensus       199 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~  278 (380)
                      .+.+......-.......++.|+.+.+...  +..+....   |.+|.+|+.+.+..   .++.+...      ++..+.
T Consensus       269 ~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~a---F~~c~~L~~i~lp~---~v~~I~~~------aF~~C~  334 (394)
T 4gt6_A          269 SVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESV---FAGCISLKSIDIPE---GITQILDD------AFAGCE  334 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCEEECCT---TCCEECTT------TTTTCT
T ss_pred             EEecccccceecCcccccccccccccCCCc--ccccCcee---ecCCCCcCEEEeCC---cccEehHh------HhhCCC
Confidence            888765321111123356788998888642  33333222   88899999999965   46666543      246788


Q ss_pred             CcceEecccCCCccchhh-hhccCCCCceEeeec
Q 035836          279 SLTSLWIEDFPNLERLSS-SIVDLQNLTILQLID  311 (380)
Q Consensus       279 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~  311 (380)
                      +|+.+.+..  .++.+.. .|.+|.+|+.+++.+
T Consensus       335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence            999999964  5777766 889999999999876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.56  E-value=1e-07  Score=76.13  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             CCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCC----CCCcceEecccCCCccc
Q 035836          218 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPL----PASLTSLWIEDFPNLER  293 (380)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~  293 (380)
                      ..|+.|++++|. +++.....   +.++++|++|++++ |..+++..-..      +..    .++|++|++++|..+++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~---L~~~~~L~~L~L~~-C~~ItD~gL~~------L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDH---MEGLQYVEKIRLCK-CHYIEDGCLER------LSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGG---GTTCSCCCEEEEES-CTTCCHHHHHH------HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCC-ccHHHHHH---hcCCCCCCEEEeCC-CCccCHHHHHH------HHhcccccCCCCEEEcCCCCcCCH
Confidence            357777777776 44443322   56777888888887 66655432211      011    24577777777777765


Q ss_pred             hhh-hhccCCCCceEeeecCCCCcc
Q 035836          294 LSS-SIVDLQNLTILQLIDCPKLKY  317 (380)
Q Consensus       294 l~~-~~~~~~~L~~L~l~~c~~l~~  317 (380)
                      -.- .+..+++|++|++++|+.+++
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCc
Confidence            433 556677777777777777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.50  E-value=1.1e-06  Score=70.61  Aligned_cols=99  Identities=22%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             ccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCccccc-ccCCCCCCccEEEe
Q 035836          125 LETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTI  202 (380)
Q Consensus       125 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l  202 (380)
                      .+.+++++ +.+..+|..+  .++|++|++++ +.+..++. .+..+++|++|++++|.. ..++ ..+..+++|+.|++
T Consensus        11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCC-CCcCccCccC--CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEEC
Confidence            45666766 4556666554  36777777777 45666533 455567777777777643 3443 34567777777777


Q ss_pred             ccCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836          203 GKGVELPSLEE--DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       203 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~  229 (380)
                      ++|.. +.++.  ...+++|+.|++++|.
T Consensus        86 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           86 NDNQL-KSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcc-CEeCHHHhcCCCCCCEEEeCCCC
Confidence            77643 33322  3445666666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.48  E-value=1.4e-06  Score=70.27  Aligned_cols=98  Identities=17%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             cEEeecCCCCCCcccccccCCCCCcEEEccccccceeccC-CCccCCCCCEEeccCCCCcccccc-cCCCCCCccEEEec
Q 035836          126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTE-GGLPCAKLTRLDIYDCERLEALPK-GLHNLTSLQELTIG  203 (380)
Q Consensus       126 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~  203 (380)
                      +.+++++ +.+..+|..+.  ++|++|++++ +.+..++. .+..+++|+.|++++|. ++.+|. .+..+++|+.|+++
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCC-CCCCccCCCcC--CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence            5666666 45566665543  6777777776 45555533 44556677777777653 344443 34666777777777


Q ss_pred             cCCCCCCCCC--CCCCCCceEEEecCCC
Q 035836          204 KGVELPSLEE--DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       204 ~~~~~~~~~~--~~~~~~L~~L~l~~~~  229 (380)
                      +|.. +.++.  ...+++|+.|++++|.
T Consensus        90 ~N~l-~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           90 DNHL-KSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence            6633 22322  2345555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.46  E-value=3.6e-05  Score=70.15  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=15.6

Q ss_pred             CCCCcceEecccCCCccchhh-hhccCCCCceEee
Q 035836          276 LPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQL  309 (380)
Q Consensus       276 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l  309 (380)
                      .+++|+.+.+.+ ..++.++. .|.+|.+|+.+.+
T Consensus       284 ~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          284 GCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred             cccccccccccc-cccceehhhhhcCCCCCCEEEc
Confidence            444555555543 23444433 4455555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.37  E-value=0.00011  Score=66.79  Aligned_cols=134  Identities=13%  Similarity=0.159  Sum_probs=87.5

Q ss_pred             cCCCCCEEeccCCCCccccc-ccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCcchhhhhhccccCCC
Q 035836          169 PCAKLTRLDIYDCERLEALP-KGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF  245 (380)
Q Consensus       169 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  245 (380)
                      .+.+|+.+.+...  +..+. ..+.++..|+.+.+..+  ++.+.  ....+.+|+.+.+...  +..+....   |.++
T Consensus       215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~a---F~~c  285 (379)
T 4h09_A          215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLL---CSGC  285 (379)
T ss_dssp             TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTT---TTTC
T ss_pred             cccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccc---cccc
Confidence            3556666666532  33332 35667788888888653  33332  2356778888888654  22222222   7889


Q ss_pred             CccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCC
Q 035836          246 SSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGL  323 (380)
Q Consensus       246 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~  323 (380)
                      ++|+.+.+.+  ..++.+....      +..+.+|+.+.+..  .++.+.. .|.+|.+|+.+.+..  .++.+...++
T Consensus       286 ~~L~~i~l~~--~~i~~I~~~a------F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF  352 (379)
T 4h09_A          286 SNLTKVVMDN--SAIETLEPRV------FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAF  352 (379)
T ss_dssp             TTCCEEEECC--TTCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred             cccccccccc--cccceehhhh------hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHh
Confidence            9999999976  4566666533      46788999999974  5777766 788999999888853  4666665444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.29  E-value=6.4e-07  Score=71.51  Aligned_cols=90  Identities=17%  Similarity=0.313  Sum_probs=48.0

Q ss_pred             CCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCC---CCCccEEE
Q 035836           29 PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNL---PPSLRSLY  105 (380)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~L~~L~  105 (380)
                      .+|+.|++++|. +.+.... .+..++.        |+.|++++|..+++.        .+.  .+...   .++|++|+
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~-~L~~~~~--------L~~L~L~~C~~ItD~--------gL~--~L~~~~~~~~~L~~L~  120 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFD-HMEGLQY--------VEKIRLCKCHYIEDG--------CLE--RLSQLENLQKSMLEME  120 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGG-GGTTCSC--------CCEEEEESCTTCCHH--------HHH--HHHTCHHHHHHCCEEE
T ss_pred             ceEeEEeCcCCC-ccHHHHH-HhcCCCC--------CCEEEeCCCCccCHH--------HHH--HHHhcccccCCCCEEE
Confidence            356777777776 6555544 3345555        777777776666543        111  11121   11466666


Q ss_pred             EecCCChhh-hHhhccCCCCccEEeecCCCCCCc
Q 035836          106 VSHCSKLES-IAERLDNNTSLETIDISNCESLKI  138 (380)
Q Consensus       106 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~  138 (380)
                      +++|..++. --..+..+++|++|++++|..++.
T Consensus       121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            666655542 223344566666666666655543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.26  E-value=5.9e-06  Score=74.42  Aligned_cols=101  Identities=24%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccCC-CccCCCCCEEecc
Q 035836          102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIY  179 (380)
Q Consensus       102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~  179 (380)
                      ..++.+++..+..+|. +..+++|++|++++++.+..++ ..+..+++|+.|++++ +.+..++.. +..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCC
Confidence            3455555434667777 8788888888887645666555 4577788888888887 466666653 4567788888888


Q ss_pred             CCCCcccccc-cCCCCCCccEEEeccCC
Q 035836          180 DCERLEALPK-GLHNLTSLQELTIGKGV  206 (380)
Q Consensus       180 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~  206 (380)
                      +|.. ..+|. .+..++ |+.|++.+|.
T Consensus        89 ~N~l-~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           89 FNAL-ESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             SSCC-SCCCSTTTCSCC-CCEEECCSSC
T ss_pred             CCcc-ceeCHHHcccCC-ceEEEeeCCC
Confidence            7543 34443 333343 7777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.25  E-value=1.9e-06  Score=77.83  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=33.9

Q ss_pred             CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccc-----hhhhhccCCCCceEeeecC
Q 035836          244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLER-----LSSSIVDLQNLTILQLIDC  312 (380)
Q Consensus       244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c  312 (380)
                      .+|+|+.|.+.+ |...........   . ...+++|++|+++. +.+..     +...+.++++|+.|++++|
T Consensus       250 ~~p~Lr~L~L~~-~~i~~~~~~~la---~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIVD-AEEQNVVVEMFL---E-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEES-CTTHHHHHHHHH---H-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCCC-CCCchHHHHHHH---h-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            456777777766 332211111110   0 02456777777765 45554     2334456778888888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=1.5e-06  Score=78.50  Aligned_cols=137  Identities=18%  Similarity=0.007  Sum_probs=80.8

Q ss_pred             cCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCC------CCccc
Q 035836          190 GLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDD------DMVSF  263 (380)
Q Consensus       190 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~l~~~  263 (380)
                      .+..+++|+.|.+.++.... ++.. ..++|++|++..|...........  ...+|+|+.|+++.+.+      .+..+
T Consensus       167 ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHH
Confidence            34556788888887763322 2222 367899999887764332222221  23689999999863101      11111


Q ss_pred             ccccccccCCCCCCCCcceEecccCCCccchhhhh---ccCCCCceEeeecCCCCccc-----CCC-CCcccccEEEecC
Q 035836          264 PLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSI---VDLQNLTILQLIDCPKLKYF-----PEK-GLPSSLLELWIWD  334 (380)
Q Consensus       264 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~---~~~~~L~~L~l~~c~~l~~~-----~~~-~~~~~L~~L~l~~  334 (380)
                      ....     ....+++|++|.+.+|.........+   ..+++|++|+++. +.+++.     +.. ...++|++|++++
T Consensus       243 ~~~l-----~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          243 RPLF-----SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             GGGS-----CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             HHHH-----hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCC
Confidence            1111     01247899999999864333222222   3578999999986 567662     221 1246899999998


Q ss_pred             ch
Q 035836          335 CP  336 (380)
Q Consensus       335 c~  336 (380)
                      |.
T Consensus       317 n~  318 (362)
T 2ra8_A          317 NY  318 (362)
T ss_dssp             BB
T ss_pred             Cc
Confidence            85

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.23  E-value=4.9e-06  Score=74.97  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=64.5

Q ss_pred             CccEEEEec-CCChhhhH-hhccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccCCCccCCCCCEE
Q 035836          100 SLRSLYVSH-CSKLESIA-ERLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  176 (380)
                      +|++|++++ | .+..++ ..+..+++|++|++++| .+..++ ..+.++++|+.|++++ +.+..++........|+.|
T Consensus        32 ~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l  108 (347)
T 2ifg_A           32 NLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQEL  108 (347)
T ss_dssp             CCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEE
T ss_pred             CeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEE
Confidence            699999996 6 466554 67899999999999995 455554 4578899999999998 6788888766554459999


Q ss_pred             eccCCCC
Q 035836          177 DIYDCER  183 (380)
Q Consensus       177 ~l~~~~~  183 (380)
                      ++.+|..
T Consensus       109 ~l~~N~~  115 (347)
T 2ifg_A          109 VLSGNPL  115 (347)
T ss_dssp             ECCSSCC
T ss_pred             EeeCCCc
Confidence            9998754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.19  E-value=4.2e-07  Score=82.72  Aligned_cols=106  Identities=17%  Similarity=0.143  Sum_probs=57.2

Q ss_pred             CccEEEEecCCChhh----hHhhc-cCCCCccEEeecCCCCCC----cccccccCCCCCcEEEcccccccee-----ccC
Q 035836          100 SLRSLYVSHCSKLES----IAERL-DNNTSLETIDISNCESLK----ILPSGLHNLRQLQKIEIWECENLVS-----FTE  165 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~----~~~~~-~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~  165 (380)
                      +|++|++++|..-..    +...+ ...++|++|++++|....    .++..+..+++|++|++++| .+..     +..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~  205 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAA  205 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHH
Confidence            477777777642221    12222 235667777777753211    13333455667777777764 2332     122


Q ss_pred             CCccCCCCCEEeccCCCCcc----cccccCCCCCCccEEEeccCC
Q 035836          166 GGLPCAKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKGV  206 (380)
Q Consensus       166 ~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~  206 (380)
                      .+..+++|++|++++|....    .+...+...++|+.|++++|.
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            33345577777777764422    222334456678888888774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.14  E-value=3.3e-07  Score=83.39  Aligned_cols=159  Identities=17%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecCCChhh-hHhhccCCCCccEEeecCCCCCCc----c
Q 035836           65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHCSKLES-IAERLDNNTSLETIDISNCESLKI----L  139 (380)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----~  139 (380)
                      |+.|++++|. +....     ...+.. .+...+.+|++|++++|..-.. +......+++|++|++++|.....    +
T Consensus        74 L~~L~Ls~n~-l~~~~-----~~~l~~-~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           74 LRQLNLAGVR-MTPVK-----CTVVAA-VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             CCEEECTTSC-CCHHH-----HHHHHH-HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             CCEEEecCCC-CCHHH-----HHHHHH-HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            9999999875 32210     011111 1122223699999999864332 222233456899999999643221    1


Q ss_pred             cccc-cCCCCCcEEEcccccccee-----ccCCCccCCCCCEEeccCCCCcc----cccccCCCCCCccEEEeccCCCCC
Q 035836          140 PSGL-HNLRQLQKIEIWECENLVS-----FTEGGLPCAKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKGVELP  209 (380)
Q Consensus       140 ~~~~-~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~  209 (380)
                      ...+ ...++|+.|++++| .+..     +...+..+++|++|++++|....    .++..+...++|+.|++++|....
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            1222 24678999999986 4433     33333456789999999986432    234556677899999999985322


Q ss_pred             C----CC-CCCCCCCceEEEecCCCCc
Q 035836          210 S----LE-EDGLPTNLHSLEIDGNMEI  231 (380)
Q Consensus       210 ~----~~-~~~~~~~L~~L~l~~~~~~  231 (380)
                      .    +. .....++|++|++++|...
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            1    10 1124578999999998743

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.91  E-value=0.00079  Score=54.48  Aligned_cols=15  Identities=7%  Similarity=-0.166  Sum_probs=7.7

Q ss_pred             hhccCCCCceEeeec
Q 035836          297 SIVDLQNLTILQLID  311 (380)
Q Consensus       297 ~~~~~~~L~~L~l~~  311 (380)
                      .+...++|++|++++
T Consensus       146 ~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          146 MLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCcCEEeccC
Confidence            344445555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.82  E-value=0.00074  Score=54.64  Aligned_cols=12  Identities=17%  Similarity=0.013  Sum_probs=7.6

Q ss_pred             CCceEEEecCCC
Q 035836          218 TNLHSLEIDGNM  229 (380)
Q Consensus       218 ~~L~~L~l~~~~  229 (380)
                      +.|++|++++|.
T Consensus       151 ~~L~~L~L~~n~  162 (185)
T 1io0_A          151 TTLLKFGYHFTQ  162 (185)
T ss_dssp             SSCCEEECCCSS
T ss_pred             CCcCEEeccCCC
Confidence            456666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.50  E-value=0.0015  Score=56.01  Aligned_cols=80  Identities=16%  Similarity=0.106  Sum_probs=45.9

Q ss_pred             cCCCCccEEeecCCCCCC--cccccccCCCCCcEEEccccccceeccCCCccCC--CCCEEeccCCCCcccccc------
Q 035836          120 DNNTSLETIDISNCESLK--ILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCA--KLTRLDIYDCERLEALPK------  189 (380)
Q Consensus       120 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~~~~~~------  189 (380)
                      .++++|+.|++++|....  .++..+..+++|+.|++++ +.+..+. .+..+.  +|++|++.+|.....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457788888888743322  2334455678888888877 4555442 122222  677777777665443331      


Q ss_pred             -cCCCCCCccEEE
Q 035836          190 -GLHNLTSLQELT  201 (380)
Q Consensus       190 -~l~~~~~L~~L~  201 (380)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             234556666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.46  E-value=0.0014  Score=56.06  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=18.1

Q ss_pred             CCCCCEEeccCCCCcc--cccccCCCCCCccEEEeccC
Q 035836          170 CAKLTRLDIYDCERLE--ALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       170 ~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~  205 (380)
                      +++|+.|++++|....  .++..+..+++|+.|+|++|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            4556666666543322  23333344556666666555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.71  E-value=0.091  Score=39.40  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             CCCCcceEecccCCCccchhh-hhccCCCCceEeeecCC
Q 035836          276 LPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCP  313 (380)
Q Consensus       276 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  313 (380)
                      .+++|++|+|++ +.++.++. .+..+++|++|++.+++
T Consensus        29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            455678888877 67777766 66777778888777743

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.61  E-value=0.75  Score=34.26  Aligned_cols=6  Identities=0%  Similarity=0.202  Sum_probs=2.2

Q ss_pred             CcEEEc
Q 035836          149 LQKIEI  154 (380)
Q Consensus       149 L~~L~l  154 (380)
                      |++|++
T Consensus        33 l~~L~L   38 (130)
T 3rfe_A           33 TTELVL   38 (130)
T ss_dssp             CSEEEC
T ss_pred             CCEEEC
Confidence            333333

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.87  E-value=1  Score=36.33  Aligned_cols=35  Identities=14%  Similarity=0.054  Sum_probs=16.0

Q ss_pred             CCCCEEeccCCCCcc----cccccCCCCCCccEEEeccC
Q 035836          171 AKLTRLDIYDCERLE----ALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       171 ~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~  205 (380)
                      +.|++|+++.|..-.    .+.+++..-+.|+.|+++++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            345555555443211    22233444445666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.0
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.9
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.87
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.62
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.59
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.09

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.8e-18  Score=157.21  Aligned_cols=300  Identities=18%  Similarity=0.170  Sum_probs=165.8

Q ss_pred             CCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCC
Q 035836            5 NSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNE   84 (380)
Q Consensus         5 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   84 (380)
                      +.+|++|++.++ +++++.....+++|++|+++++. ++.++.   +..+++        |++|+++++. +..+     
T Consensus        43 l~~l~~L~l~~~-~I~~l~gl~~L~nL~~L~Ls~N~-l~~l~~---l~~L~~--------L~~L~L~~n~-i~~i-----  103 (384)
T d2omza2          43 LDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDITP---LKNLTK--------LVDILMNNNQ-IADI-----  103 (384)
T ss_dssp             HTTCCEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCTT--------CCEEECCSSC-CCCC-----
T ss_pred             hCCCCEEECCCC-CCCCccccccCCCCCEEeCcCCc-CCCCcc---ccCCcc--------cccccccccc-cccc-----
Confidence            456788888776 45556555667888888888876 776652   556666        8888887764 2222     


Q ss_pred             CCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCC------------------------------
Q 035836           85 LPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCE------------------------------  134 (380)
Q Consensus        85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------------------------------  134 (380)
                       +      +++.++ +|+.|+++++.. ..++... ....+..+....+.                              
T Consensus       104 -~------~l~~l~-~L~~L~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (384)
T d2omza2         104 -T------PLANLT-NLTGLTLFNNQI-TDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN  173 (384)
T ss_dssp             -G------GGTTCT-TCCEEECCSSCC-CCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTT
T ss_pred             -c------cccccc-cccccccccccc-ccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcc
Confidence             1      345555 577777766532 2111111 11111111111100                              


Q ss_pred             -----------CCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEec
Q 035836          135 -----------SLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG  203 (380)
Q Consensus       135 -----------~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  203 (380)
                                 ...........+++++.++++++ .+..++. ...+++|+++++.+|. ++.++ .+..+++|+.|.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~  249 (384)
T d2omza2         174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLA  249 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccccceeeccCC-ccCCCCc-ccccCCCCEEECCCCC-CCCcc-hhhcccccchhccc
Confidence                       00001223345677777777763 4444432 2335677888877753 33343 45667778888877


Q ss_pred             cCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceE
Q 035836          204 KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSL  283 (380)
Q Consensus       204 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L  283 (380)
                      +|. ++..+....+++|++|+++++.... ...     +..++.++.+.+..  ..+..+...        ..++++++|
T Consensus       250 ~n~-l~~~~~~~~~~~L~~L~l~~~~l~~-~~~-----~~~~~~l~~l~~~~--n~l~~~~~~--------~~~~~l~~L  312 (384)
T d2omza2         250 NNQ-ISNLAPLSGLTKLTELKLGANQISN-ISP-----LAGLTALTNLELNE--NQLEDISPI--------SNLKNLTYL  312 (384)
T ss_dssp             SSC-CCCCGGGTTCTTCSEEECCSSCCCC-CGG-----GTTCTTCSEEECCS--SCCSCCGGG--------GGCTTCSEE
T ss_pred             cCc-cCCCCcccccccCCEeeccCcccCC-CCc-----cccccccccccccc--ccccccccc--------chhcccCeE
Confidence            764 3444445666778888877765332 222     44566666676665  334333321        255667777


Q ss_pred             ecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECc
Q 035836          284 WIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDY  363 (380)
Q Consensus       284 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~  363 (380)
                      ++++ +.++.++ .+..+++|++|++++| .++.++.-.-.++|++|++++|. ++..      ..+..++++..+.+.+
T Consensus       313 ~ls~-n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~-l~~l------~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         313 TLYF-NNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQ-ISDL------TPLANLTRITQLGLND  382 (384)
T ss_dssp             ECCS-SCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCBC------GGGTTCTTCSEEECCC
T ss_pred             ECCC-CCCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCc-CCCC------hhhccCCCCCEeeCCC
Confidence            7776 3566554 3666777777777764 56665432224567777776653 2211      1133455666666655


Q ss_pred             e
Q 035836          364 K  364 (380)
Q Consensus       364 ~  364 (380)
                      +
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=7.2e-17  Score=141.89  Aligned_cols=218  Identities=15%  Similarity=0.237  Sum_probs=134.2

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEec
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDI  178 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l  178 (380)
                      +|++|++++|......|..+..+++|++|++++| .+..+|..+  ...+..|+... +.+..++.. +.....+..+..
T Consensus        56 ~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~--~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~  131 (305)
T d1xkua_          56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVEL  131 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--CTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEEC
T ss_pred             cccccccccccccccchhhhhCCCccCEecccCC-ccCcCccch--hhhhhhhhccc-cchhhhhhhhhhcccccccccc
Confidence            3555555555433223444555666666666653 344444332  33555666555 233333322 122334555555


Q ss_pred             cCCCCcc--cccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecC
Q 035836          179 YDCERLE--ALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGC  256 (380)
Q Consensus       179 ~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  256 (380)
                      ..+....  ..+..+..+++|+.+.+.+|.. ..++. ..+++|++|+++++........ .   +..++.++.|++++ 
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~-~~~~~L~~L~l~~n~~~~~~~~-~---~~~~~~l~~L~~s~-  204 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAA-S---LKGLNNLAKLGLSF-  204 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS-SCCTTCSEEECTTSCCCEECTG-G---GTTCTTCCEEECCS-
T ss_pred             ccccccccCCCccccccccccCccccccCCc-cccCc-ccCCccCEEECCCCcCCCCChh-H---hhcccccccccccc-
Confidence            5443221  2223455677788888877643 33332 3467888888888765544332 1   66788899999988 


Q ss_pred             CCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCC--------ccccc
Q 035836          257 DDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGL--------PSSLL  328 (380)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~L~  328 (380)
                       +.+..++...      +..+++|++|++++ +.++.+|..+.++++|++|++++ +++++++...+        ..+|+
T Consensus       205 -n~l~~~~~~~------~~~l~~L~~L~L~~-N~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~  275 (305)
T d1xkua_         205 -NSISAVDNGS------LANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYS  275 (305)
T ss_dssp             -SCCCEECTTT------GGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             -cccccccccc------ccccccceeeeccc-ccccccccccccccCCCEEECCC-CccCccChhhccCcchhcccCCCC
Confidence             4666665433      24678999999999 48888888889999999999998 57888866433        35788


Q ss_pred             EEEecCchh
Q 035836          329 ELWIWDCPL  337 (380)
Q Consensus       329 ~L~l~~c~~  337 (380)
                      .|++++++.
T Consensus       276 ~L~L~~N~~  284 (305)
T d1xkua_         276 GVSLFSNPV  284 (305)
T ss_dssp             EEECCSSSS
T ss_pred             EEECCCCcC
Confidence            999988773

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=3.1e-18  Score=151.35  Aligned_cols=249  Identities=15%  Similarity=0.159  Sum_probs=177.1

Q ss_pred             cceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEecC-CChhhhHhhccCCCCccEEeecCCCCCCcccccc
Q 035836           65 LEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSHC-SKLESIAERLDNNTSLETIDISNCESLKILPSGL  143 (380)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  143 (380)
                      +..|+++++. +...       ..++. .++.++ +|++|+++++ ...+.+|..++++++|++|++++|......+..+
T Consensus        52 v~~L~L~~~~-l~g~-------~~lp~-~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~  121 (313)
T d1ogqa_          52 VNNLDLSGLN-LPKP-------YPIPS-SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             EEEEEEECCC-CSSC-------EECCG-GGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             EEEEECCCCC-CCCC-------CCCCh-HHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            8889998763 2211       01222 456677 6999999874 4344789999999999999999966666566667


Q ss_pred             cCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCc-cEEEeccCCCCCCCCCCCCCCCceE
Q 035836          144 HNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSL-QELTIGKGVELPSLEEDGLPTNLHS  222 (380)
Q Consensus       144 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~~~~~L~~  222 (380)
                      ..+..|+.++++.+.....+|..+..++.++.+++.+|.....+|..+..+..+ +.+.+..+......+..........
T Consensus       122 ~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~  201 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF  201 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE
T ss_pred             cchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999876666777788888999999999987777888877777665 7777776643222222222224446


Q ss_pred             EEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCcc-chhhhhccC
Q 035836          223 LEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIVDL  301 (380)
Q Consensus       223 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~  301 (380)
                      +++..+......+. .   +..+++++.+++.+ +.....++ ..       ..+++|++|++++ +.++ .+|..+.++
T Consensus       202 l~l~~~~~~~~~~~-~---~~~~~~l~~l~~~~-~~l~~~~~-~~-------~~~~~L~~L~Ls~-N~l~g~iP~~l~~L  267 (313)
T d1ogqa_         202 VDLSRNMLEGDASV-L---FGSDKNTQKIHLAK-NSLAFDLG-KV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQL  267 (313)
T ss_dssp             EECCSSEEEECCGG-G---CCTTSCCSEEECCS-SEECCBGG-GC-------CCCTTCCEEECCS-SCCEECCCGGGGGC
T ss_pred             cccccccccccccc-c---cccccccccccccc-cccccccc-cc-------ccccccccccCcc-CeecccCChHHhCC
Confidence            77777654443332 2   55788999999988 43332333 33       4678999999998 4666 788899999


Q ss_pred             CCCceEeeecCCCCc-ccCCCCCcccccEEEecCchhH
Q 035836          302 QNLTILQLIDCPKLK-YFPEKGLPSSLLELWIWDCPLI  338 (380)
Q Consensus       302 ~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~l  338 (380)
                      ++|++|++++ ++++ .+|..+..++|+.+++.+++.+
T Consensus       268 ~~L~~L~Ls~-N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         268 KFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TTCCEEECCS-SEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             CCCCEEECcC-CcccccCCCcccCCCCCHHHhCCCccc
Confidence            9999999999 5676 6777555667888888876644

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1e-16  Score=145.32  Aligned_cols=292  Identities=18%  Similarity=0.178  Sum_probs=197.7

Q ss_pred             CCCCCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccc
Q 035836            2 CDTNSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFS   81 (380)
Q Consensus         2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   81 (380)
                      ++.+++|++|+++++ .++.+++...+++|++|++++|. +..++.   +..+++        |+.|+++++.. .....
T Consensus        62 l~~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~-i~~i~~---l~~l~~--------L~~L~~~~~~~-~~~~~  127 (384)
T d2omza2          62 VEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP---LANLTN--------LTGLTLFNNQI-TDIDP  127 (384)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GTTCTT--------CCEEECCSSCC-CCCGG
T ss_pred             cccCCCCCEEeCcCC-cCCCCccccCCcccccccccccc-cccccc---cccccc--------ccccccccccc-ccccc
Confidence            357899999999997 67888888889999999999998 776652   566677        99999876532 21100


Q ss_pred             cCCCCc---------cccccccCC---------------------CCCCccEEEEecCCChhhhHhhccCCCCccEEeec
Q 035836           82 KNELPA---------TLESLEVGN---------------------LPPSLRSLYVSHCSKLESIAERLDNNTSLETIDIS  131 (380)
Q Consensus        82 ~~~~~~---------~~~~l~~~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  131 (380)
                      ......         .+.......                     ............+  ..........+++++.+.++
T Consensus       128 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~l~  205 (384)
T d2omza2         128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN--KVSDISVLAKLTNLESLIAT  205 (384)
T ss_dssp             GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS--CCCCCGGGGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc--ccccccccccccccceeecc
Confidence            000000         000000000                     0001111111111  11122345567899999999


Q ss_pred             CCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCC
Q 035836          132 NCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSL  211 (380)
Q Consensus       132 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  211 (380)
                      ++ .+..++. ....++|+.|++.++ .++.++ .+..+++|+.+++++|. +..++ .+..+++|+.|+++++.. ...
T Consensus       206 ~n-~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~L~~L~l~~~~l-~~~  278 (384)
T d2omza2         206 NN-QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQI-SNI  278 (384)
T ss_dssp             SS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCC-CCC
T ss_pred             CC-ccCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCC-cccccccCCEeeccCccc-CCC
Confidence            85 4444443 455789999999984 566654 45567899999999875 44444 367789999999998743 444


Q ss_pred             CCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCc
Q 035836          212 EEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNL  291 (380)
Q Consensus       212 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  291 (380)
                      +....++.++.+.+..+.... ...     +..+++++.|++++  +.+..++. .       ..+++|++|++++| .+
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~-~~~-----~~~~~~l~~L~ls~--n~l~~l~~-l-------~~l~~L~~L~L~~n-~l  341 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLED-ISP-----ISNLKNLTYLTLYF--NNISDISP-V-------SSLTKLQRLFFANN-KV  341 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSC-CGG-----GGGCTTCSEEECCS--SCCSCCGG-G-------GGCTTCCEEECCSS-CC
T ss_pred             Ccccccccccccccccccccc-ccc-----cchhcccCeEECCC--CCCCCCcc-c-------ccCCCCCEEECCCC-CC
Confidence            555677889999998876432 222     56788999999998  46666653 2       37889999999995 78


Q ss_pred             cchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecCc
Q 035836          292 ERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDC  335 (380)
Q Consensus       292 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c  335 (380)
                      +.++ .+.++++|++|++++ ++++.++.-.-.++|++|+++++
T Consensus       342 ~~l~-~l~~l~~L~~L~l~~-N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SDVS-SLANLTNINWLSAGH-NQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCG-GGGGCTTCCEEECCS-SCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCh-hHcCCCCCCEEECCC-CcCCCChhhccCCCCCEeeCCCC
Confidence            8877 588999999999987 57888765344579999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=7.1e-16  Score=135.39  Aligned_cols=263  Identities=17%  Similarity=0.217  Sum_probs=173.3

Q ss_pred             ccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCc
Q 035836            8 LEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPA   87 (380)
Q Consensus         8 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~   87 (380)
                      ++.++.++ .+++++|. ..++++++|+++++. ++.++.. .+..+++        |++|+++++......      +.
T Consensus        12 ~~~~~C~~-~~L~~lP~-~l~~~l~~L~Ls~N~-i~~l~~~-~f~~l~~--------L~~L~l~~n~~~~i~------~~   73 (305)
T d1xkua_          12 LRVVQCSD-LGLEKVPK-DLPPDTALLDLQNNK-ITEIKDG-DFKNLKN--------LHTLILINNKISKIS------PG   73 (305)
T ss_dssp             TTEEECTT-SCCCSCCC-SCCTTCCEEECCSSC-CCCBCTT-TTTTCTT--------CCEEECCSSCCCCBC------TT
T ss_pred             CCEEEecC-CCCCccCC-CCCCCCCEEECcCCc-CCCcChh-Hhhcccc--------ccccccccccccccc------hh
Confidence            34444444 25677766 346789999999886 8888765 5677777        999999887533221      11


Q ss_pred             cccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccce--ecc
Q 035836           88 TLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLV--SFT  164 (380)
Q Consensus        88 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~--~l~  164 (380)
                           .+..++ +|++|++++|. ++.+|..+  .+.+..|...+ +.+..++.. +.....+..+....+....  ...
T Consensus        74 -----~f~~l~-~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~  143 (305)
T d1xkua_          74 -----AFAPLV-KLERLYLSKNQ-LKELPEKM--PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  143 (305)
T ss_dssp             -----TTTTCT-TCCEEECCSSC-CSBCCSSC--CTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             -----hhhCCC-ccCEecccCCc-cCcCccch--hhhhhhhhccc-cchhhhhhhhhhccccccccccccccccccCCCc
Confidence                 244566 69999998874 66666543  45788888887 444444433 4456667777776532211  222


Q ss_pred             CCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccC
Q 035836          165 EGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH  243 (380)
Q Consensus       165 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  243 (380)
                      ..+..+++|+.+++.+|. +..++..+  +++|+.|++.++......+ ....++.++.|++++|.... ....+   +.
T Consensus       144 ~~~~~l~~L~~l~l~~n~-l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~~~---~~  216 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS---LA  216 (305)
T ss_dssp             TGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT---GG
T ss_pred             cccccccccCccccccCC-ccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccc-ccccc---cc
Confidence            234456788888888753 44455433  6788888888775443332 23566788889888875433 33333   66


Q ss_pred             CCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-------hhccCCCCceEeeecCCCCc
Q 035836          244 RFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-------SIVDLQNLTILQLIDCPKLK  316 (380)
Q Consensus       244 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-------~~~~~~~L~~L~l~~c~~l~  316 (380)
                      ++++|++|++++  +.++.++...       ..+++|++|++++ +.++.++.       .....++|+.|++.+++ ++
T Consensus       217 ~l~~L~~L~L~~--N~L~~lp~~l-------~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~-~~  285 (305)
T d1xkua_         217 NTPHLRELHLNN--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQ  285 (305)
T ss_dssp             GSTTCCEEECCS--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SC
T ss_pred             ccccceeeeccc--cccccccccc-------ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc-Cc
Confidence            788999999998  3677777655       5788999999998 57877754       23456789999999854 44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.71  E-value=3.7e-17  Score=144.34  Aligned_cols=250  Identities=18%  Similarity=0.160  Sum_probs=166.1

Q ss_pred             CCceEeecCCcCcc---ccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEE
Q 035836           30 SLKQLRISDCDNIR---TLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYV  106 (380)
Q Consensus        30 ~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l  106 (380)
                      .++.|+++++. +.   .+|.  .+..++.        |++|+++++..+...     +|.     .++.++ +|++|++
T Consensus        51 ~v~~L~L~~~~-l~g~~~lp~--~l~~L~~--------L~~L~Ls~~N~l~g~-----iP~-----~i~~L~-~L~~L~L  108 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKPYPIPS--SLANLPY--------LNFLYIGGINNLVGP-----IPP-----AIAKLT-QLHYLYI  108 (313)
T ss_dssp             CEEEEEEECCC-CSSCEECCG--GGGGCTT--------CSEEEEEEETTEESC-----CCG-----GGGGCT-TCSEEEE
T ss_pred             EEEEEECCCCC-CCCCCCCCh--HHhcCcc--------ccccccccccccccc-----ccc-----cccccc-ccchhhh
Confidence            57888888775 33   3444  3667777        888888765444311     132     345556 6888888


Q ss_pred             ecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCC-CEEeccCCCCcc
Q 035836          107 SHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKL-TRLDIYDCERLE  185 (380)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L-~~L~l~~~~~~~  185 (380)
                      ++|......+..+..+.+|+++++++|.....+|..+.+++.++.++++++.....+|..+..+..+ +.+.+.+|....
T Consensus       109 s~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             EEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccc
Confidence            8886555556667778888888888877777778788888888888888754444666666665554 677777655444


Q ss_pred             cccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccc
Q 035836          186 ALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP  264 (380)
Q Consensus       186 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~  264 (380)
                      ..|..+..+.. ..+.+..+......+. ....++++.+++.++........     +..+++|+.|++++ +.....+|
T Consensus       189 ~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-----~~~~~~L~~L~Ls~-N~l~g~iP  261 (313)
T d1ogqa_         189 KIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRN-NRIYGTLP  261 (313)
T ss_dssp             ECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCS-SCCEECCC
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccccc-----cccccccccccCcc-CeecccCC
Confidence            55555554433 3566665544333332 25667888888888765443332     56778889999988 43333677


Q ss_pred             cccccccCCCCCCCCcceEecccCCCcc-chhhhhccCCCCceEeeecCCCCcc
Q 035836          265 LEDKRLGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILQLIDCPKLKY  317 (380)
Q Consensus       265 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~  317 (380)
                      ...       ..+++|++|++++ +.++ .+| .+.++++|+.+++++++.+..
T Consensus       262 ~~l-------~~L~~L~~L~Ls~-N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         262 QGL-------TQLKFLHSLNVSF-NNLCGEIP-QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGG-------GGCTTCCEEECCS-SEEEEECC-CSTTGGGSCGGGTCSSSEEES
T ss_pred             hHH-------hCCCCCCEEECcC-CcccccCC-CcccCCCCCHHHhCCCccccC
Confidence            666       4778899999988 5666 566 456778888888888665544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.1e-15  Score=125.84  Aligned_cols=196  Identities=22%  Similarity=0.215  Sum_probs=136.7

Q ss_pred             CCCccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCC
Q 035836            5 NSSLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNE   84 (380)
Q Consensus         5 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   84 (380)
                      ...+..++.++. +++.+|. ..++++++|+|+++. +..++.. .+..+++        |++|+++++ .++.+     
T Consensus         9 ~~~~~~v~C~~~-~L~~iP~-~lp~~l~~L~Ls~N~-i~~l~~~-~f~~l~~--------L~~L~L~~N-~l~~l-----   70 (266)
T d1p9ag_           9 VASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENL-LYTFSLA-TLMPYTR--------LTQLNLDRA-ELTKL-----   70 (266)
T ss_dssp             STTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSC-CSEEEGG-GGTTCTT--------CCEEECTTS-CCCEE-----
T ss_pred             cCCCeEEEccCC-CCCeeCc-CcCcCCCEEECcCCc-CCCcCHH-Hhhcccc--------ccccccccc-ccccc-----
Confidence            445555666553 5677764 235789999999987 8888766 6677777        999999886 35444     


Q ss_pred             CCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceecc
Q 035836           85 LPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFT  164 (380)
Q Consensus        85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  164 (380)
                       +      .++.++ +|++|++++|. +...+..+..+++|++|+++++......+..+..+.+++.|++.+ +.+..++
T Consensus        71 -~------~~~~l~-~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~  140 (266)
T d1p9ag_          71 -Q------VDGTLP-VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLP  140 (266)
T ss_dssp             -E------CCSCCT-TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCC
T ss_pred             -c------cccccc-ccccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccc-cccceec
Confidence             1      234555 69999998884 666677778888999999988554443344456678888888887 4666666


Q ss_pred             CCC-ccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCCCCCceEEEecCCC
Q 035836          165 EGG-LPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGLPTNLHSLEIDGNM  229 (380)
Q Consensus       165 ~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~  229 (380)
                      ... ..+++++.+++++|......+..+..+++|+.|++++|. ++.+|. ....++|+.|+|++|+
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence            544 346788888888865444444567778888888888875 445553 3556777888887765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-14  Score=123.85  Aligned_cols=105  Identities=24%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             CCCCccEEEEecCCChhhhH-hhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCE
Q 035836           97 LPPSLRSLYVSHCSKLESIA-ERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTR  175 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  175 (380)
                      +|+++++|++++|. +..++ ..+..+++|++|++++| .+..++. +..+++|++|++++ +.+...+..+..+++|+.
T Consensus        29 lp~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~  104 (266)
T d1p9ag_          29 LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTV  104 (266)
T ss_dssp             CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCE
T ss_pred             cCcCCCEEECcCCc-CCCcCHHHhhccccccccccccc-ccccccc-cccccccccccccc-cccccccccccccccccc
Confidence            34468888887774 44444 45677777888887774 4555543 34567777777776 355555555555666666


Q ss_pred             EeccCCCCcccccccCCCCCCccEEEeccC
Q 035836          176 LDIYDCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      |+++++......+..+..+.+++.|.+.++
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             ccccccccceeecccccccccccccccccc
Confidence            666665443333334445555666666555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-14  Score=125.04  Aligned_cols=201  Identities=18%  Similarity=0.231  Sum_probs=136.1

Q ss_pred             CCCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCccc-ccccCCCCCcEEEccccccceeccC-CCccCCC
Q 035836           96 NLPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILP-SGLHNLRQLQKIEIWECENLVSFTE-GGLPCAK  172 (380)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~  172 (380)
                      .+|.++++|++++|. ++.+|. .+.++++|++|+++++ .+..++ ..+..+..+..+.+.....+..++. .+..+++
T Consensus        29 ~ip~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          29 GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCCCCEEECcCCc-CCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhhccccc
Confidence            345578999999885 666654 6788899999999884 444443 3345677888888776677777654 3455788


Q ss_pred             CCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC--CCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836          173 LTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR  250 (380)
Q Consensus       173 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  250 (380)
                      |++|++.+|......+..+...++|+.+++.++.. +.++.  ....++|++|++.+|.. ..+....   +.++++|+.
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~---f~~l~~L~~  181 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRI-SSVPERA---FRGLHSLDR  181 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-CEECTTT---TTTCTTCCE
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccCcc-cccchhh---hccccccch
Confidence            99998888665444444566777888888888743 33332  34567788888888753 3333333   667788888


Q ss_pred             eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836          251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC  312 (380)
Q Consensus       251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  312 (380)
                      +++++  +.+..+....      +..+++|++|++++ +.+..++. .+.++++|++|+++++
T Consensus       182 l~l~~--N~l~~i~~~~------f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         182 LLLHQ--NRVAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             EECCS--SCCCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhhh--ccccccChhH------hhhhhhcccccccc-cccccccccccccccccCEEEecCC
Confidence            88887  3444443222      25667888888887 56666554 7778888888888773

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.59  E-value=2.9e-13  Score=120.56  Aligned_cols=272  Identities=27%  Similarity=0.271  Sum_probs=153.4

Q ss_pred             CccEEEEecCCCCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCC
Q 035836            7 SLEILEIWVCHSLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELP   86 (380)
Q Consensus         7 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~   86 (380)
                      ++++|+|+++ .++.+|.  .+++|++|+++++. ++++|..     ..+        |+.|+++++. ++.        
T Consensus        39 ~l~~LdLs~~-~L~~lp~--~~~~L~~L~Ls~N~-l~~lp~~-----~~~--------L~~L~l~~n~-l~~--------   92 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPE--LPPHLESLVASCNS-LTELPEL-----PQS--------LKSLLVDNNN-LKA--------   92 (353)
T ss_dssp             TCSEEECTTS-CCSCCCS--CCTTCSEEECCSSC-CSSCCCC-----CTT--------CCEEECCSSC-CSC--------
T ss_pred             CCCEEEeCCC-CCCCCCC--CCCCCCEEECCCCC-Ccccccc-----hhh--------hhhhhhhhcc-cch--------
Confidence            6889999886 5777775  46899999999875 8877743     345        9999998763 332        


Q ss_pred             ccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC
Q 035836           87 ATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG  166 (380)
Q Consensus        87 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  166 (380)
                             +..+|+.|++|++++|. +..+|. ++.+++|++|+++++.. ...+..   ...+..+.+..+...  ....
T Consensus        93 -------l~~lp~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~~---~~~l~~l~~~~~~~~--~~~~  157 (353)
T d1jl5a_          93 -------LSDLPPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSL-KKLPDL---PPSLEFIAAGNNQLE--ELPE  157 (353)
T ss_dssp             -------CCSCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCS--SCCC
T ss_pred             -------hhhhccccccccccccc-cccccc-hhhhccceeeccccccc-cccccc---cccccchhhcccccc--cccc
Confidence                   33455579999999985 666764 57789999999988543 333322   334555555432211  1112


Q ss_pred             CccCCCCCEEeccCCCC-------------------cccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEEecC
Q 035836          167 GLPCAKLTRLDIYDCER-------------------LEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLEIDG  227 (380)
Q Consensus       167 ~~~~~~L~~L~l~~~~~-------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  227 (380)
                      +..++.++.+.+.++..                   ...++ .+..++.|+.+.++++.... .+  ....++..+.+.+
T Consensus       158 l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~-~~--~~~~~l~~~~~~~  233 (353)
T d1jl5a_         158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LP--DLPPSLEALNVRD  233 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC--SCCTTCCEEECCS
T ss_pred             ccccccceecccccccccccccccccccccccccccccccc-cccccccccccccccccccc-cc--ccccccccccccc
Confidence            23344555555554322                   11221 23456677777777654322 11  2234455555554


Q ss_pred             CCCcchhhhhhccccCCCCccceeeeecC-CCCCcccccc-------cccccCCCCCCCCcceEecccCCCccchhhhhc
Q 035836          228 NMEIWKSTIEWGRGFHRFSSLRRLAISGC-DDDMVSFPLE-------DKRLGTALPLPASLTSLWIEDFPNLERLSSSIV  299 (380)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~l~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~  299 (380)
                      +.......        ..+.+....+... ...+..++..       ..........+++|++|++++| .++.+|.   
T Consensus       234 ~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~---  301 (353)
T d1jl5a_         234 NYLTDLPE--------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA---  301 (353)
T ss_dssp             SCCSCCCC--------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC---
T ss_pred             cccccccc--------ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc---
Confidence            43221110        1112222222110 0001111000       0001111235678889988884 6777764   


Q ss_pred             cCCCCceEeeecCCCCcccCCCCCcccccEEEecCchhHH
Q 035836          300 DLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWDCPLIE  339 (380)
Q Consensus       300 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~  339 (380)
                      .+++|++|++++ ++++.+|.  .+.+|++|++++|+ ++
T Consensus       302 ~~~~L~~L~L~~-N~L~~l~~--~~~~L~~L~L~~N~-L~  337 (353)
T d1jl5a_         302 LPPRLERLIASF-NHLAEVPE--LPQNLKQLHVEYNP-LR  337 (353)
T ss_dssp             CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSC-CS
T ss_pred             ccCCCCEEECCC-CcCCcccc--ccCCCCEEECcCCc-CC
Confidence            357888888887 56888775  45688888888876 54

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.3e-14  Score=120.35  Aligned_cols=210  Identities=17%  Similarity=0.159  Sum_probs=153.6

Q ss_pred             CCccccCCCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCC
Q 035836           18 SLTYIAGVQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNL   97 (380)
Q Consensus        18 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~   97 (380)
                      +++.+|. ..++++++|+|+++. ++.++.. .+.+++.        |+.|+++++. +..+.          ...+...
T Consensus        22 ~L~~iP~-~ip~~~~~L~Ls~N~-i~~i~~~-~f~~l~~--------L~~L~ls~n~-l~~i~----------~~~~~~~   79 (284)
T d1ozna_          22 GLQAVPV-GIPAASQRIFLHGNR-ISHVPAA-SFRACRN--------LTILWLHSNV-LARID----------AAAFTGL   79 (284)
T ss_dssp             CCSSCCT-TCCTTCSEEECTTSC-CCEECTT-TTTTCTT--------CCEEECCSSC-CCEEC----------TTTTTTC
T ss_pred             CCCccCC-CCCCCCCEEECcCCc-CCCCCHH-Hhhcccc--------cccccccccc-ccccc----------ccccccc
Confidence            4777765 346789999999987 8988876 6788888        9999998764 33330          0023344


Q ss_pred             CCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCCE
Q 035836           98 PPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTR  175 (380)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~  175 (380)
                      + .++.+.+..+..+..+ +..+.++++|++|++++|......+..+...++|+.+++.+ +.++.++.. +..+++|+.
T Consensus        80 ~-~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~  157 (284)
T d1ozna_          80 A-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTH  157 (284)
T ss_dssp             T-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             c-cccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhh
Confidence            5 5888887766556655 56788899999999998654333344566688999999988 577887764 445788999


Q ss_pred             EeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC-CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeee
Q 035836          176 LDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAIS  254 (380)
Q Consensus       176 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  254 (380)
                      |++++|......+..+.++++|+.+.+.+|......+ ....+++|++|++++|...... ..+   +..+++|++|+++
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~~~---~~~~~~L~~L~l~  233 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEA---LAPLRALQYLRLN  233 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHH---HTTCTTCCEEECC
T ss_pred             cccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc-ccc---cccccccCEEEec
Confidence            9999875444444677889999999999886544433 3467789999999998765433 333   6788999999999


Q ss_pred             c
Q 035836          255 G  255 (380)
Q Consensus       255 ~  255 (380)
                      +
T Consensus       234 ~  234 (284)
T d1ozna_         234 D  234 (284)
T ss_dssp             S
T ss_pred             C
Confidence            8

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=1.4e-13  Score=115.07  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=39.6

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      +|++|++.+|. ++.+ ..+..+++|++|++++|. +..++ .+..+++++.++++++ .++.++ .+..+++|+.+.++
T Consensus        42 ~L~~L~l~~~~-i~~l-~~l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTG-VTTI-EGVQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSC-CCCC-TTGGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred             CcCEEECCCCC-CCcc-hhHhcCCCCcEeecCCce-eeccc-cccccccccccccccc-cccccc-cccccccccccccc
Confidence            46666666653 4444 235566666666666643 33332 2455666666666553 233332 23344555555555


Q ss_pred             CC
Q 035836          180 DC  181 (380)
Q Consensus       180 ~~  181 (380)
                      ++
T Consensus       116 ~~  117 (227)
T d1h6ua2         116 ST  117 (227)
T ss_dssp             TS
T ss_pred             cc
Confidence            44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=2.8e-13  Score=113.15  Aligned_cols=188  Identities=17%  Similarity=0.209  Sum_probs=122.9

Q ss_pred             CCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEE
Q 035836          121 NNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQEL  200 (380)
Q Consensus       121 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  200 (380)
                      .+.+|+.|++.+| .+..++ ++..+++|++|+++++ .+..+.. +..+++++.+++.+|. .+.++ .+.++++|+.+
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCc-eeecccc-cccccccccccccccc-ccccc-ccccccccccc
Confidence            4567888888874 455563 5777888888888874 4554432 5556788888887753 33443 46677888888


Q ss_pred             EeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCc
Q 035836          201 TIGKGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASL  280 (380)
Q Consensus       201 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L  280 (380)
                      .++++.. .........+.++.+.+.++.......      +..+++|+.|++++ | .+..+.. .       ..+++|
T Consensus       113 ~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~L~~L~l~~-n-~~~~~~~-l-------~~l~~L  175 (227)
T d1h6ua2         113 DLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGN-A-QVSDLTP-L-------ANLSKL  175 (227)
T ss_dssp             ECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCS-S-CCCCCGG-G-------TTCTTC
T ss_pred             ccccccc-cccchhccccchhhhhchhhhhchhhh------hccccccccccccc-c-ccccchh-h-------cccccc
Confidence            8877643 233334556677777777665433222      44667788888876 3 3333332 2       366788


Q ss_pred             ceEecccCCCccchhhhhccCCCCceEeeecCCCCcccCCCCCcccccEEEecC
Q 035836          281 TSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWIWD  334 (380)
Q Consensus       281 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  334 (380)
                      ++|+++++ .+++++ .+.++++|++|++++| ++++++.-...++|+.|++++
T Consensus       176 ~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         176 TTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             eecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            88888874 677766 4777888888888885 677776534456788888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.8e-15  Score=127.94  Aligned_cols=181  Identities=16%  Similarity=0.142  Sum_probs=73.6

Q ss_pred             CCCccEEeecCCCCCCc-ccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccc--cccCCCCCCcc
Q 035836          122 NTSLETIDISNCESLKI-LPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEAL--PKGLHNLTSLQ  198 (380)
Q Consensus       122 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~  198 (380)
                      ..+|++|++++|..... +...+..+++|++|.+.+|.--...+..+..+++|++|++++|..+++.  ......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34555555555432211 2222344555555555554211122222233455555555555444321  11123345555


Q ss_pred             EEEeccCCCCCCCC----CCCCCCCceEEEecCCC-CcchhhhhhccccCCCCccceeeeecCCCCCcccc-cccccccC
Q 035836          199 ELTIGKGVELPSLE----EDGLPTNLHSLEIDGNM-EIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFP-LEDKRLGT  272 (380)
Q Consensus       199 ~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~-~~~~~~~~  272 (380)
                      .|++++|..++...    ....++.|+.|++.++. .++.......  +.++++|++|++++ |..++... ...     
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l--~~~~~~L~~L~L~~-~~~itd~~~~~l-----  196 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSD-SVMLKNDCFQEF-----  196 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTT-CTTCCGGGGGGG-----
T ss_pred             ccccccccccccccchhhhcccccccchhhhccccccccccccccc--cccccccccccccc-ccCCCchhhhhh-----
Confidence            55555554332210    00223455555555442 1222211111  23445555555554 33333211 111     


Q ss_pred             CCCCCCCcceEecccCCCccchh-hhhccCCCCceEeeecC
Q 035836          273 ALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLTILQLIDC  312 (380)
Q Consensus       273 ~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c  312 (380)
                        ..+++|++|++++|..+++-. ..+..+++|++|++.+|
T Consensus       197 --~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 --FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             --GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             --cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              234455555555554443221 13444555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=126.19  Aligned_cols=205  Identities=15%  Similarity=0.226  Sum_probs=135.8

Q ss_pred             CccEEEEecCCChh-hhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceec--cCCCccCCCCCEE
Q 035836          100 SLRSLYVSHCSKLE-SIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSF--TEGGLPCAKLTRL  176 (380)
Q Consensus       100 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L  176 (380)
                      +|++|++++|.... .+...+..+++|++|++++|......+..+..+++|++|++++|..++..  ......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            58888888774322 45566778888888888887543344455667888888888887766532  1222347789999


Q ss_pred             eccCCCCccc--ccccC-CCCCCccEEEeccCCC-CCC--CCC-CCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          177 DIYDCERLEA--LPKGL-HNLTSLQELTIGKGVE-LPS--LEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       177 ~l~~~~~~~~--~~~~l-~~~~~L~~L~l~~~~~-~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      ++++|..+++  +...+ ...++|+.|++.++.. ++.  +.. ...+++|++|++++|..+++.....   +.++++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~---l~~~~~L~  203 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQ  203 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG---GGGCTTCC
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh---hcccCcCC
Confidence            9888766543  11222 2356888998887632 222  111 1357889999999988777555433   66889999


Q ss_pred             eeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCCceEeeecCCCCccc
Q 035836          250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILQLIDCPKLKYF  318 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  318 (380)
                      +|++++ |..+.+.....      +..+++|++|++++|.....+......+|+|+   + +|+.++.+
T Consensus       204 ~L~L~~-C~~i~~~~l~~------L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         204 HLSLSR-CYDIIPETLLE------LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             EEECTT-CTTCCGGGGGG------GGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             EEECCC-CCCCChHHHHH------HhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence            999999 77765432111      24678999999999854455555566777765   3 46666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.1e-12  Score=108.02  Aligned_cols=162  Identities=19%  Similarity=0.284  Sum_probs=76.1

Q ss_pred             CccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEec
Q 035836          124 SLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIG  203 (380)
Q Consensus       124 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  203 (380)
                      +|++|++++| .+..++ ++..+++|++|+++++ .++.++. +..+++|+.|++++| .++.++ .+..+++|+.|++.
T Consensus        47 ~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc-cccccccccccccc
Confidence            4455555542 333322 2444555555555542 3333332 233445555555543 233333 24455555555555


Q ss_pred             cCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceE
Q 035836          204 KGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSL  283 (380)
Q Consensus       204 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L  283 (380)
                      ++.. ..++....++.++.++++++... ....     +..+++|+.+++++  +.+..++. .       ..+++|++|
T Consensus       121 ~~~~-~~~~~l~~l~~l~~l~~~~n~l~-~~~~-----~~~l~~L~~l~l~~--n~l~~i~~-l-------~~l~~L~~L  183 (210)
T d1h6ta2         121 HNGI-SDINGLVHLPQLESLYLGNNKIT-DITV-----LSRLTKLDTLSLED--NQISDIVP-L-------AGLTKLQNL  183 (210)
T ss_dssp             TSCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-----GGGCTTCSEEECCS--SCCCCCGG-G-------TTCTTCCEE
T ss_pred             cccc-ccccccccccccccccccccccc-cccc-----cccccccccccccc--cccccccc-c-------cCCCCCCEE
Confidence            5432 22222333445555555544321 1111     33455666666665  23444432 1       245666666


Q ss_pred             ecccCCCccchhhhhccCCCCceEeee
Q 035836          284 WIEDFPNLERLSSSIVDLQNLTILQLI  310 (380)
Q Consensus       284 ~l~~~~~l~~l~~~~~~~~~L~~L~l~  310 (380)
                      ++++ +.+++++ .+.++++|++|+++
T Consensus       184 ~Ls~-N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         184 YLSK-NHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCS-SCCCBCG-GGTTCTTCSEEEEE
T ss_pred             ECCC-CCCCCCh-hhcCCCCCCEEEcc
Confidence            6665 3555554 45566666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=9.5e-13  Score=107.49  Aligned_cols=100  Identities=23%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             CCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEE
Q 035836          122 NTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELT  201 (380)
Q Consensus       122 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  201 (380)
                      ++++++|+++++ .+..+. ++..+++|++|+++++ .+..++. +..+++|+.|++++|.. ..++ .+.+++.|+.|+
T Consensus        39 l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccc-cccCccc-ccCCccccccccccccc-cccc-cccccccccccc
Confidence            456777777763 444443 3556677777777663 4554443 44556666666665432 2232 245566666666


Q ss_pred             eccCCCCCCCCCCCCCCCceEEEecCC
Q 035836          202 IGKGVELPSLEEDGLPTNLHSLEIDGN  228 (380)
Q Consensus       202 l~~~~~~~~~~~~~~~~~L~~L~l~~~  228 (380)
                      ++++.... .+....+++|+.|++++|
T Consensus       113 l~~~~~~~-~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2         113 LFNNQITD-IDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             CCSSCCCC-CGGGTTCTTCSEEECCSS
T ss_pred             cccccccc-ccccchhhhhHHhhhhhh
Confidence            66553322 222333445555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-12  Score=110.39  Aligned_cols=86  Identities=24%  Similarity=0.290  Sum_probs=61.4

Q ss_pred             CCCCCccEEEEecCCChhhhHh-hccCCCCccEEeecCCCCCCcccc-cccCCCCCcEEEccccccceeccCC-CccCCC
Q 035836           96 NLPPSLRSLYVSHCSKLESIAE-RLDNNTSLETIDISNCESLKILPS-GLHNLRQLQKIEIWECENLVSFTEG-GLPCAK  172 (380)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~  172 (380)
                      .+|+++++|++++|. +..+|. .+.++++|++|++++|.....++. .+..+++++++.+..++.+...+.. +..+++
T Consensus        26 ~l~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          26 DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             CSCSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCCCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccc
Confidence            344579999999874 666655 578889999999988666655543 3567888888888766666665544 455778


Q ss_pred             CCEEeccCCC
Q 035836          173 LTRLDIYDCE  182 (380)
Q Consensus       173 L~~L~l~~~~  182 (380)
                      |+++++.++.
T Consensus       105 L~~l~l~~~~  114 (242)
T d1xwdc1         105 LQYLLISNTG  114 (242)
T ss_dssp             CCEEEEESCC
T ss_pred             ccccccchhh
Confidence            8888887753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.1e-12  Score=108.05  Aligned_cols=166  Identities=17%  Similarity=0.173  Sum_probs=127.3

Q ss_pred             CCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCCCCCCCCceEEE
Q 035836          145 NLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEEDGLPTNLHSLE  224 (380)
Q Consensus       145 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  224 (380)
                      .+.+|+.|++.++ .+..+. ++..+++|++|++++|. ++.++ .+..+++|+.|++++| .++.++....+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEE
T ss_pred             HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcc-ccCcc-ccccCccccccccccc-cccccccccccccccccc
Confidence            4678999999984 666654 46678999999999874 45555 3678999999999988 456666677789999999


Q ss_pred             ecCCCCcchhhhhhccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhhhhccCCCC
Q 035836          225 IDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNL  304 (380)
Q Consensus       225 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L  304 (380)
                      +.+|.... ...     +..+++++.+++++  +.+......        ..+++|+++++++ +.+..++ .+.++++|
T Consensus       119 l~~~~~~~-~~~-----l~~l~~l~~l~~~~--n~l~~~~~~--------~~l~~L~~l~l~~-n~l~~i~-~l~~l~~L  180 (210)
T d1h6ta2         119 LEHNGISD-ING-----LVHLPQLESLYLGN--NKITDITVL--------SRLTKLDTLSLED-NQISDIV-PLAGLTKL  180 (210)
T ss_dssp             CTTSCCCC-CGG-----GGGCTTCCEEECCS--SCCCCCGGG--------GGCTTCSEEECCS-SCCCCCG-GGTTCTTC
T ss_pred             cccccccc-ccc-----cccccccccccccc--ccccccccc--------ccccccccccccc-ccccccc-cccCCCCC
Confidence            99987543 222     66788999999987  445554432        3678999999998 4777776 48889999


Q ss_pred             ceEeeecCCCCcccCCCCCcccccEEEecC
Q 035836          305 TILQLIDCPKLKYFPEKGLPSSLLELWIWD  334 (380)
Q Consensus       305 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  334 (380)
                      ++|++++| .+++++.-.-.++|++|++++
T Consensus       181 ~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             CEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            99999984 788887533457899999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.5e-12  Score=106.72  Aligned_cols=211  Identities=19%  Similarity=0.193  Sum_probs=127.0

Q ss_pred             cEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccccc-ccCCCCCcEEEccccccceeccCC-CccCCCCCEEecc
Q 035836          102 RSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSG-LHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIY  179 (380)
Q Consensus       102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~  179 (380)
                      +.++.++. .++.+|..+  .+++++|++++ +.+..+|.. +.++++|++|+++++.....++.. +..++.++++.+.
T Consensus        11 ~~i~c~~~-~l~~iP~~l--~~~l~~L~Ls~-n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESC-SCSSCCSCS--CSCCSEEEEES-CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCC-CCCCcCCCC--CCCCCEEECcC-CcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45555543 355666544  24788888887 456666654 567888888888875544444443 3456788888776


Q ss_pred             CCCCccccc-ccCCCCCCccEEEeccCCCCCCCCCCCCC---CCceEEEecCCCCcchhhhhhccccCCC-Cccceeeee
Q 035836          180 DCERLEALP-KGLHNLTSLQELTIGKGVELPSLEEDGLP---TNLHSLEIDGNMEIWKSTIEWGRGFHRF-SSLRRLAIS  254 (380)
Q Consensus       180 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~  254 (380)
                      .+..+...+ ..+.++++|+.+++.++. ++..+....+   ..+..+...++ .+..+....   +.++ ..++.|++.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~---~~~~~~~l~~L~l~  161 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNS---FVGLSFESVILWLN  161 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCT-TCCEECTTS---STTSBSSCEEEECC
T ss_pred             ccccccccccccccccccccccccchhh-hccccccccccccccccccccccc-ccccccccc---cccccccceeeecc
Confidence            655554443 456778888888888774 3334433333   33443343333 333332222   3343 366777777


Q ss_pred             cCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCCCCCcccccEEEe
Q 035836          255 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPEKGLPSSLLELWI  332 (380)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l  332 (380)
                      +  +.+..++...       ...++++.+....++.++.++. .+.++++|++|++++ +.++.+|...+ .++..|..
T Consensus       162 ~--n~l~~i~~~~-------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~-~~l~~L~~  229 (242)
T d1xwdc1         162 K--NGIQEIHNCA-------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGL-ENLKKLRA  229 (242)
T ss_dssp             S--SCCCEECTTT-------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSSC-TTCCEEES
T ss_pred             c--cccccccccc-------ccchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHHHH-cCCccccc
Confidence            5  5666666543       2345666665555577888876 578888888888888 56888876543 34444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=3.3e-12  Score=104.20  Aligned_cols=98  Identities=23%  Similarity=0.339  Sum_probs=48.8

Q ss_pred             CccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          100 SLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      ++++|++++|. +..+. .+..+++|++|++++| .+..++. +.++++|+.|+++++ .+..++ .+..++.|+.++++
T Consensus        41 ~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLG-IKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCC-CCCcc-ccccCCCcCcCccccc-cccCccc-ccCCccccccccccc-cccccc-cccccccccccccc
Confidence            46666666553 33332 2445566666666653 3444332 555666666666553 333333 23345556666665


Q ss_pred             CCCCcccccccCCCCCCccEEEeccC
Q 035836          180 DCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       180 ~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      ++.... + ..+..+++|+.|++++|
T Consensus       115 ~~~~~~-~-~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2         115 NNQITD-I-DPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             SSCCCC-C-GGGTTCTTCSEEECCSS
T ss_pred             cccccc-c-cccchhhhhHHhhhhhh
Confidence            543322 1 23445556666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.40  E-value=4e-11  Score=106.35  Aligned_cols=269  Identities=25%  Similarity=0.265  Sum_probs=154.4

Q ss_pred             CCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEec
Q 035836           29 PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH  108 (380)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~  108 (380)
                      .++++|++++++ ++.+|..     .++        |++|+++++ .++.+      |         ..+.+|++|++.+
T Consensus        38 ~~l~~LdLs~~~-L~~lp~~-----~~~--------L~~L~Ls~N-~l~~l------p---------~~~~~L~~L~l~~   87 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPEL-----PPH--------LESLVASCN-SLTEL------P---------ELPQSLKSLLVDN   87 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCSC-----CTT--------CSEEECCSS-CCSSC------C---------CCCTTCCEEECCS
T ss_pred             cCCCEEEeCCCC-CCCCCCC-----CCC--------CCEEECCCC-CCccc------c---------cchhhhhhhhhhh
Confidence            478999999987 7777642     345        999999875 45544      2         1223799999998


Q ss_pred             CCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCccccc
Q 035836          109 CSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALP  188 (380)
Q Consensus       109 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~  188 (380)
                      |. +..++..   .+.|++|++++ +.+..+|. +..+++|++|++.++ .+...+..   ...+..+.+..+....  .
T Consensus        88 n~-l~~l~~l---p~~L~~L~L~~-n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~---~~~l~~l~~~~~~~~~--~  155 (353)
T d1jl5a_          88 NN-LKALSDL---PPLLEYLGVSN-NQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNNQLEE--L  155 (353)
T ss_dssp             SC-CSCCCSC---CTTCCEEECCS-SCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSS--C
T ss_pred             cc-cchhhhh---ccccccccccc-cccccccc-hhhhccceeeccccc-cccccccc---cccccchhhccccccc--c
Confidence            84 4444321   24699999998 45677774 567899999999874 44444332   2356777766543322  2


Q ss_pred             ccCCCCCCccEEEeccCCCCC-------------------CCCCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccc
Q 035836          189 KGLHNLTSLQELTIGKGVELP-------------------SLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR  249 (380)
Q Consensus       189 ~~l~~~~~L~~L~l~~~~~~~-------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  249 (380)
                      ..+..++.++.+.+.++....                   .++....++.++.++++++.....        .....++.
T Consensus       156 ~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--------~~~~~~l~  227 (353)
T d1jl5a_         156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL--------PDLPPSLE  227 (353)
T ss_dssp             CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC--------CSCCTTCC
T ss_pred             ccccccccceeccccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccc
Confidence            345566777777777653221                   122223445566666655432211        11223344


Q ss_pred             eeeeecCCCCCcccccccccccCCCCCCCCcceEeccc--CCCccc--------------hhhhhccCCCCceEeeecCC
Q 035836          250 RLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED--FPNLER--------------LSSSIVDLQNLTILQLIDCP  313 (380)
Q Consensus       250 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~--------------l~~~~~~~~~L~~L~l~~c~  313 (380)
                      .+.+.+  ..+...+.          .++.+...++..  +..+..              +......+++|++|++++| 
T Consensus       228 ~~~~~~--~~~~~~~~----------~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-  294 (353)
T d1jl5a_         228 ALNVRD--NYLTDLPE----------LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-  294 (353)
T ss_dssp             EEECCS--SCCSCCCC----------CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-
T ss_pred             cccccc--cccccccc----------ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-
Confidence            444443  11111111          112222222221  011111              1112234689999999995 


Q ss_pred             CCcccCCCCCcccccEEEecCchhHHHHhhccCCCCCccccCcCeeEECceeeecCCCC
Q 035836          314 KLKYFPEKGLPSSLLELWIWDCPLIEEKCRKDGGQYWNLLTHIPYVSIDYKWVFDDDPT  372 (380)
Q Consensus       314 ~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (380)
                      +++.+|.  ..++|+.|++++|. ++.+     .   ...+++..+.+.++++. .+|.
T Consensus       295 ~l~~lp~--~~~~L~~L~L~~N~-L~~l-----~---~~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         295 KLIELPA--LPPRLERLIASFNH-LAEV-----P---ELPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCSCCCC--CCTTCCEEECCSSC-CSCC-----C---CCCTTCCEEECCSSCCS-SCCC
T ss_pred             ccCcccc--ccCCCCEEECCCCc-CCcc-----c---cccCCCCEEECcCCcCC-CCCc
Confidence            6888875  45799999999874 3321     1   12457888899888864 4453

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.8e-10  Score=88.96  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             ccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCc-cCCCCCEEecc
Q 035836          101 LRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGL-PCAKLTRLDIY  179 (380)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~  179 (380)
                      +++|++++|. +..++..+..+++|++|++++ +.+..++ .+..+++|++|++++ +.+..++.... .+++|++|+++
T Consensus        20 lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          20 DRELDLRGYK-IPVIENLGATLDQFDAIDFSD-NEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CEEEECTTSC-CCSCCCGGGGTTCCSEEECCS-SCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcEEECCCCC-CCccCccccccccCCEEECCC-CCCCccC-CcccCcchhhhhccc-ccccCCCccccccccccccceec
Confidence            5555555542 444443334455555555555 2333332 244455555555554 23444443322 24445555544


Q ss_pred             CC
Q 035836          180 DC  181 (380)
Q Consensus       180 ~~  181 (380)
                      +|
T Consensus        96 ~N   97 (162)
T d1a9na_          96 NN   97 (162)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-09  Score=85.24  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=26.3

Q ss_pred             cCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccC
Q 035836          144 HNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       144 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      .++.++++|++++ +.++.++.....+++|+.|++++|. +..++ ++..+++|+.|++++|
T Consensus        15 ~n~~~lr~L~L~~-n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N   73 (162)
T d1a9na_          15 TNAVRDRELDLRG-YKIPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNN   73 (162)
T ss_dssp             ECTTSCEEEECTT-SCCCSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSS
T ss_pred             cCcCcCcEEECCC-CCCCccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccc
Confidence            3444555555555 3444443333334455555555542 22332 2344444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=4.3e-09  Score=84.70  Aligned_cols=108  Identities=16%  Similarity=0.258  Sum_probs=63.9

Q ss_pred             CCCCccEEEEecCCChhhh-HhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCC-CccCCCCC
Q 035836           97 LPPSLRSLYVSHCSKLESI-AERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLT  174 (380)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~  174 (380)
                      +|.++++|++++|.....+ +..+..+++|++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|+
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCC
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCHHHHhCCCccc
Confidence            3446777888777532223 34456677777777777444444444556677777777776 466666554 34466777


Q ss_pred             EEeccCCCCcccccccCCCCCCccEEEeccC
Q 035836          175 RLDIYDCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       175 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      +|++++|......+..+..+++|++|+++++
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccCCccccccCHHHhcCCccccccccccc
Confidence            7777765433333344555666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=3.3e-09  Score=85.39  Aligned_cols=124  Identities=19%  Similarity=0.135  Sum_probs=81.0

Q ss_pred             CCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCC--CCCCCCCceEEEecCCCCcchhhhhhccccCCCCccce
Q 035836          173 LTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLE--EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRR  250 (380)
Q Consensus       173 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  250 (380)
                      .++++.++ ..++.+|..+  .++++.|++++|......+  ....+++|++|++++|........ .   +..+++|++
T Consensus        10 ~~~v~Cs~-~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~-~---~~~~~~L~~   82 (192)
T d1w8aa_          10 GTTVDCTG-RGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-A---FEGASHIQE   82 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-T---TTTCTTCCE
T ss_pred             CCEEEEeC-CCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc-c---cccccccce
Confidence            45666654 4567777765  3578888888875433232  224567788888877664433222 2   556777888


Q ss_pred             eeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecC
Q 035836          251 LAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDC  312 (380)
Q Consensus       251 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  312 (380)
                      |++++  +.+..++...      +..+++|++|++++ +.++.++. .|.++++|++|+++++
T Consensus        83 L~Ls~--N~l~~l~~~~------F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          83 LQLGE--NKIKEISNKM------FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCS--CCCCEECSSS------STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeecc--ccccccCHHH------HhCCCcccccccCC-ccccccCHHHhcCCccccccccccc
Confidence            88877  5666666533      35677788888887 57777755 6677777888887773

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.5e-10  Score=106.31  Aligned_cols=112  Identities=15%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             CCccEEEEecCCCCccccC---CCCCCCCceEeecCCcCcccccccc---ceecCCCCccccccccceeEeecCCCcccc
Q 035836            6 SSLEILEIWVCHSLTYIAG---VQLPPSLKQLRISDCDNIRTLTVEE---GIQSSSSSRRYTSYLLEELRICSCRSLTCI   79 (380)
Q Consensus         6 ~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   79 (380)
                      ++|++|++++. .++....   ...++++++|++.+|. +++.....   .+..++.        |++|+++++. +.+.
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~--------L~~LdLs~N~-i~~~   70 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPA--------LAELNLRSNE-LGDV   70 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTT--------CCEEECTTCC-CHHH
T ss_pred             CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCC--------CCEEECcCCc-CChH
Confidence            36788888653 4443211   3346788888888886 65433211   2355566        8888887763 3211


Q ss_pred             cccCCCCccccccccCCCCCCccEEEEecCCCh----hhhHhhccCCCCccEEeecCCC
Q 035836           80 FSKNELPATLESLEVGNLPPSLRSLYVSHCSKL----ESIAERLDNNTSLETIDISNCE  134 (380)
Q Consensus        80 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~  134 (380)
                      .    +. .+.. .+..-..+|++|++++|...    ..++..+..+++|++|++++|.
T Consensus        71 ~----~~-~l~~-~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          71 G----VH-CVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             H----HH-HHHH-TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             H----HH-HHHH-HHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            0    00 0000 01111125888888877522    1345566777888888887743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=2.6e-09  Score=79.29  Aligned_cols=75  Identities=23%  Similarity=0.322  Sum_probs=45.0

Q ss_pred             cEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccC
Q 035836          126 ETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKG  205 (380)
Q Consensus       126 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  205 (380)
                      ++|++++ +.+..++ .+..+++|++|++++ +.++.+|..+..+++|++|++++|. ++.++ .+..+++|+.|++++|
T Consensus         1 R~L~Ls~-n~l~~l~-~l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAH-KDLTVLC-HLEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTT-SCCSSCC-CGGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCC-CCCCCCc-ccccCCCCCEEECCC-CccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCC
Confidence            4566766 4445554 356667777777766 4566666555666667777776643 33443 3555666666666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=9.1e-09  Score=76.23  Aligned_cols=58  Identities=17%  Similarity=0.201  Sum_probs=28.3

Q ss_pred             CCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh--hhccCCCCceEeeec
Q 035836          243 HRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILQLID  311 (380)
Q Consensus       243 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~  311 (380)
                      ..+++|+.|++++  +.++.++. .       ..+++|++|++++ +.+..++.  .+..+++|+.|++++
T Consensus        40 ~~l~~L~~L~l~~--N~i~~l~~-~-------~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          40 AALRCLEVLQASD--NALENVDG-V-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             GGCTTCCEEECCS--SCCCCCGG-G-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             hhhhccccccccc--ccccccCc-c-------ccccccCeEECCC-CccCCCCCchhhcCCCCCCEEECCC
Confidence            3445555555554  34444432 1       2445555555555 34444432  345555555565555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6.1e-08  Score=74.79  Aligned_cols=87  Identities=24%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             cCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccchhh-hhccCCCCceEeeecCCCCcccCC
Q 035836          242 FHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILQLIDCPKLKYFPE  320 (380)
Q Consensus       242 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~  320 (380)
                      +..+++|++|++.+ .+.++.++...      +..+++|+.|++++ +.++.++. .|..+++|++|++++ ++++.++.
T Consensus        27 l~~l~~l~~L~l~~-n~~l~~i~~~~------f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~   97 (156)
T d2ifga3          27 LPGAENLTELYIEN-QQHLQHLELRD------LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSW   97 (156)
T ss_dssp             SCSCSCCSEEECCS-CSSCCEECGGG------SCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCS
T ss_pred             ccCccccCeeecCC-CccccccCchh------hccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccCh
Confidence            55667777777766 45566666533      35677788888887 57777754 677888888888887 67878777


Q ss_pred             CCC-cccccEEEecCchh
Q 035836          321 KGL-PSSLLELWIWDCPL  337 (380)
Q Consensus       321 ~~~-~~~L~~L~l~~c~~  337 (380)
                      ..+ ..+|+.|++++++.
T Consensus        98 ~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             TTTCSCCCCEEECCSSCC
T ss_pred             hhhccccccccccCCCcc
Confidence            544 34688888876653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.62  E-value=7.9e-09  Score=91.17  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             CCCCCccEEEeccCCCCCC-----C-CCCCCCCCceEEEecCCCCcchhhhhhccccCCCCccceeeeecCCCCCccccc
Q 035836          192 HNLTSLQELTIGKGVELPS-----L-EEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRRLAISGCDDDMVSFPL  265 (380)
Q Consensus       192 ~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~  265 (380)
                      ...+.|+.|++.+|.....     + ......++|+.|++++|..-........+.+..+++|++|++++ |. +.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~-n~-i~~~g~  260 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND-CL-LSARGA  260 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT-CC-CCHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc-Cc-cCchhh
Confidence            3445566666655532110     0 11233456666666665432211111111245667777777776 32 221100


Q ss_pred             ccccccCCC--CCCCCcceEecccCCCccc-----hhhhhc-cCCCCceEeeec
Q 035836          266 EDKRLGTAL--PLPASLTSLWIEDFPNLER-----LSSSIV-DLQNLTILQLID  311 (380)
Q Consensus       266 ~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~~-~~~~L~~L~l~~  311 (380)
                      .  .+...+  ...+.|++|+++++ .++.     +...+. +++.|++|++++
T Consensus       261 ~--~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         261 A--AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             H--HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             H--HHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            0  000000  12245777777763 4432     232332 466677777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-09  Score=98.88  Aligned_cols=111  Identities=19%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             CCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCCCCccccccccCCCCCCccEEEEec
Q 035836           29 PSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNELPATLESLEVGNLPPSLRSLYVSH  108 (380)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~  108 (380)
                      ++|++|++++.. +.+......+..+++        +++|++++|. +++..     ...+.. .+...+ +|++|++++
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~--------l~~L~L~~~~-i~~~~-----~~~l~~-~L~~~~-~L~~LdLs~   64 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQ--------CQVVRLDDCG-LTEAR-----CKDISS-ALRVNP-ALAELNLRS   64 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTT--------CSEEEEESSC-CCHHH-----HHHHHH-HHHTCT-TCCEEECTT
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCC--------CCEEEeCCCC-CCHHH-----HHHHHH-HHhcCC-CCCEEECcC
Confidence            468999997665 776553335667777        9999999984 44220     011111 234566 699999999


Q ss_pred             CCChh----hhHhhcc-CCCCccEEeecCCCCCCc-----ccccccCCCCCcEEEcccc
Q 035836          109 CSKLE----SIAERLD-NNTSLETIDISNCESLKI-----LPSGLHNLRQLQKIEIWEC  157 (380)
Q Consensus       109 ~~~~~----~~~~~~~-~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~  157 (380)
                      |....    .+...+. ...+|++|++++|. ++.     ++..+..+++|++|+++++
T Consensus        65 N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          65 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             CCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc
Confidence            85321    2333333 34589999999975 432     3445677899999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.56  E-value=6.8e-10  Score=89.87  Aligned_cols=78  Identities=10%  Similarity=0.128  Sum_probs=40.3

Q ss_pred             ccEEEEecC-CChhhhHhhccCCCCccEEeecCCCCCCcccccccCCCCCcEEEccccccceeccCCCccCCCCCEEecc
Q 035836          101 LRSLYVSHC-SKLESIAERLDNNTSLETIDISNCESLKILPSGLHNLRQLQKIEIWECENLVSFTEGGLPCAKLTRLDIY  179 (380)
Q Consensus       101 L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  179 (380)
                      ++.+.+.+. +.+..++..+..+++|++|++++ +.+..++ .+..+++|+.|+++++ .+..++.....+++|++|++.
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~-n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSE-EEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcc-cCCCCcc-cccCCccccChhhccc-ccccccccccccccccccccc
Confidence            555555542 23444555566666666666665 3444443 3555666666666653 444443322223345555555


Q ss_pred             CC
Q 035836          180 DC  181 (380)
Q Consensus       180 ~~  181 (380)
                      +|
T Consensus       102 ~N  103 (198)
T d1m9la_         102 YN  103 (198)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=4.8e-10  Score=90.80  Aligned_cols=142  Identities=16%  Similarity=0.196  Sum_probs=92.7

Q ss_pred             CccEEEEecC-CCCccccC-CCCCCCCceEeecCCcCccccccccceecCCCCccccccccceeEeecCCCcccccccCC
Q 035836            7 SLEILEIWVC-HSLTYIAG-VQLPPSLKQLRISDCDNIRTLTVEEGIQSSSSSRRYTSYLLEELRICSCRSLTCIFSKNE   84 (380)
Q Consensus         7 ~L~~L~l~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   84 (380)
                      .++.+++.+. ..++.++. ...+++|++|+++++. ++.++   .+..+++        |+.|+++++. ++.+     
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~---~l~~l~~--------L~~L~Ls~N~-i~~i-----   85 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS---SLSGMEN--------LRILSLGRNL-IKKI-----   85 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC---CHHHHTT--------CCEEECCEEE-ECSC-----
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc---cccCCcc--------ccChhhcccc-cccc-----
Confidence            3455566542 12333322 3447899999999887 77764   3677777        9999999873 4333     


Q ss_pred             CCccccccccCCCCCCccEEEEecCCChhhhHhhccCCCCccEEeecCCCCCCccc--ccccCCCCCcEEEcccccccee
Q 035836           85 LPATLESLEVGNLPPSLRSLYVSHCSKLESIAERLDNNTSLETIDISNCESLKILP--SGLHNLRQLQKIEIWECENLVS  162 (380)
Q Consensus        85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~  162 (380)
                       ++.     ...++ +|++|++++|. +..++ .+..+++|++|++++ +.+..++  ..+..+++|+.|++++++ +..
T Consensus        86 -~~~-----~~~~~-~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~  154 (198)
T d1m9la_          86 -ENL-----DAVAD-TLEELWISYNQ-IASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP-LYN  154 (198)
T ss_dssp             -SSH-----HHHHH-HCCEEECSEEE-CCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSH-HHH
T ss_pred             -ccc-----ccccc-ccccccccccc-ccccc-ccccccccccccccc-chhccccccccccCCCccceeecCCCc-ccc
Confidence             211     11223 59999999884 65554 366788999999998 4555554  346789999999999853 332


Q ss_pred             ccCC-----------CccCCCCCEEe
Q 035836          163 FTEG-----------GLPCAKLTRLD  177 (380)
Q Consensus       163 l~~~-----------~~~~~~L~~L~  177 (380)
                      .+..           +..+|+|+.|+
T Consensus       155 ~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         155 DYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CcccccchhhHHHHHHHHCCCcCEeC
Confidence            2221           23478899887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.52  E-value=2.7e-09  Score=94.29  Aligned_cols=230  Identities=14%  Similarity=0.083  Sum_probs=126.5

Q ss_pred             CccEEEEecCCCh----hhhHhhccCCCCccEEeecCCCCCC---c-------ccccccCCCCCcEEEcccccccee---
Q 035836          100 SLRSLYVSHCSKL----ESIAERLDNNTSLETIDISNCESLK---I-------LPSGLHNLRQLQKIEIWECENLVS---  162 (380)
Q Consensus       100 ~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~---~-------~~~~~~~l~~L~~L~l~~~~~l~~---  162 (380)
                      +|++|++++|..-    ..+-..+...++|+.++++++....   .       +...+..+++|+.|++++| .+..   
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~  110 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQ  110 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc-ccccccc
Confidence            6999999987421    2355567788999999998753221   1       1223455788999999875 3322   


Q ss_pred             --ccCCCccCCCCCEEeccCCCCccc----ccc---------cCCCCCCccEEEeccCCCCCC----CC-CCCCCCCceE
Q 035836          163 --FTEGGLPCAKLTRLDIYDCERLEA----LPK---------GLHNLTSLQELTIGKGVELPS----LE-EDGLPTNLHS  222 (380)
Q Consensus       163 --l~~~~~~~~~L~~L~l~~~~~~~~----~~~---------~l~~~~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~  222 (380)
                        +...+..+++|++|++++|.....    +..         .....+.|+.+.++++.....    +. .....+.|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              222233467899999988753111    000         113456788888877632111    00 1134567888


Q ss_pred             EEecCCCCcchhhhh-hccccCCCCccceeeeecCCCCCcccccccccccCCCCCCCCcceEecccCCCccch-----hh
Q 035836          223 LEIDGNMEIWKSTIE-WGRGFHRFSSLRRLAISGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLERL-----SS  296 (380)
Q Consensus       223 L~l~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~  296 (380)
                      |++++|......... ..+.+..+++|+.|++++ + .+....  ...+...+...++|++|++++| .+..-     ..
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N-~i~~~g--~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~  265 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLG--SSALAIALKSWPNLRELGLNDC-LLSARGAAAVVD  265 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHH--HHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhcchhhhccccccc-c-cccccc--cccccccccccccchhhhhhcC-ccCchhhHHHHH
Confidence            888887643221111 112255677888888877 3 232110  0111122245677888888875 44432     22


Q ss_pred             hhcc--CCCCceEeeecCCCCcccCCC----C---CcccccEEEecCch
Q 035836          297 SIVD--LQNLTILQLIDCPKLKYFPEK----G---LPSSLLELWIWDCP  336 (380)
Q Consensus       297 ~~~~--~~~L~~L~l~~c~~l~~~~~~----~---~~~~L~~L~l~~c~  336 (380)
                      .+..  .+.|++|++++| .++.-...    .   -.++|++|+++++.
T Consensus       266 ~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            2322  356888888874 45431110    0   12467788877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.7e-07  Score=69.16  Aligned_cols=90  Identities=19%  Similarity=0.112  Sum_probs=40.5

Q ss_pred             ccccccCCCCCcEEEccccccceeccCC-CccCCCCCEEeccCCCCcccccccCCCCCCccEEEeccCCCCCCCCC-CCC
Q 035836          139 LPSGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIYDCERLEALPKGLHNLTSLQELTIGKGVELPSLEE-DGL  216 (380)
Q Consensus       139 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~  216 (380)
                      .|..+..+++|++|++.+.+.++.++.. +..+++|+.|++++|.....-+.++..+++|+.|++++|.. +.++. ...
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC-cccChhhhc
Confidence            3444444455555555443344444432 33345555555554332222233455555555555555532 22221 122


Q ss_pred             CCCceEEEecCCC
Q 035836          217 PTNLHSLEIDGNM  229 (380)
Q Consensus       217 ~~~L~~L~l~~~~  229 (380)
                      ..+|+.|+|++|+
T Consensus       102 ~~~l~~L~L~~Np  114 (156)
T d2ifga3         102 GLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cccccccccCCCc
Confidence            3346666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=6.3e-05  Score=57.68  Aligned_cols=85  Identities=19%  Similarity=0.119  Sum_probs=51.7

Q ss_pred             hhHhhccCCCCccEEeecCCCCCCccc---ccccCCCCCcEEEccccccceeccCC-CccCCCCCEEeccCCCCccccc-
Q 035836          114 SIAERLDNNTSLETIDISNCESLKILP---SGLHNLRQLQKIEIWECENLVSFTEG-GLPCAKLTRLDIYDCERLEALP-  188 (380)
Q Consensus       114 ~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-  188 (380)
                      .++.....+++|++|++++| .+..++   ..+..+++|+.|++++ +.+..+++. ......|+.+++.+|+...... 
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            34444456888999999884 444443   3345678888888887 566666541 2223467888888765533221 


Q ss_pred             ------ccCCCCCCccEE
Q 035836          189 ------KGLHNLTSLQEL  200 (380)
Q Consensus       189 ------~~l~~~~~L~~L  200 (380)
                            ..+..+|+|+.|
T Consensus       134 ~~~y~~~i~~~~P~L~~L  151 (162)
T d1koha1         134 QSTYISAIRERFPKLLRL  151 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEE
T ss_pred             chhHHHHHHHHCCCCCEE
Confidence                  123456666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0012  Score=50.25  Aligned_cols=12  Identities=33%  Similarity=0.592  Sum_probs=5.6

Q ss_pred             CCCccceeeeec
Q 035836          244 RFSSLRRLAISG  255 (380)
Q Consensus       244 ~~~~L~~L~l~~  255 (380)
                      .+++|+.|++++
T Consensus        89 ~l~~L~~L~Ls~  100 (162)
T d1koha1          89 KAPNLKILNLSG  100 (162)
T ss_dssp             HSTTCCCCCCTT
T ss_pred             hCCccccccccc
Confidence            344444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.85  E-value=0.0028  Score=48.30  Aligned_cols=15  Identities=13%  Similarity=0.071  Sum_probs=8.9

Q ss_pred             hhccCCCCceEeeec
Q 035836          297 SIVDLQNLTILQLID  311 (380)
Q Consensus       297 ~~~~~~~L~~L~l~~  311 (380)
                      .+...++|++|++.+
T Consensus       126 ~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         126 AIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCccEeeCcC
Confidence            445556666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.60  E-value=0.0036  Score=47.64  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=17.2

Q ss_pred             CccEEEEecCCChh-----hhHhhccCCCCccEEeecCC
Q 035836          100 SLRSLYVSHCSKLE-----SIAERLDNNTSLETIDISNC  133 (380)
Q Consensus       100 ~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~  133 (380)
                      +|++|+++++..++     .+-..+...++|++|++++|
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            46666665533222     12334445556666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.59  E-value=0.0068  Score=45.92  Aligned_cols=58  Identities=19%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             CccEEEEecCCChh-----hhHhhccCCCCccEEeecCCCCCCc----ccccccCCCCCcEEEcccc
Q 035836          100 SLRSLYVSHCSKLE-----SIAERLDNNTSLETIDISNCESLKI----LPSGLHNLRQLQKIEIWEC  157 (380)
Q Consensus       100 ~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~  157 (380)
                      +|++|+++++..++     .+-..+...++|++|++++|..-..    +...+...++++.++++++
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            47777776543332     2334445666777777776432211    1122333556666666553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.09  E-value=0.019  Score=43.25  Aligned_cols=15  Identities=7%  Similarity=-0.166  Sum_probs=8.2

Q ss_pred             hhccCCCCceEeeec
Q 035836          297 SIVDLQNLTILQLID  311 (380)
Q Consensus       297 ~~~~~~~L~~L~l~~  311 (380)
                      .+...+.|++|++..
T Consensus       127 ~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         127 MLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCcCEEeCcC
Confidence            444555666665544