Citrus Sinensis ID: 035852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960
Protein Sequence
MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGYGVGDVLGWLYVSFSMGFIWWLFGL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccEEEccccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccEEEcccccccEEEccccccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHccccccccccEEEEcccccccccccccccccEEEEEEEEEccccHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccHHHHccHcccEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHccccccEEEccccccccccccHHHHccccccEEEEcccccccccccccHccccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEccccccccccccccccccccEEEEccccccccccccccccEEEEcccccccccccHHHHHHcccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHHccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccHHHHHEEEcccccccccccHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHcccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHcccHHHccHHHcccccEEEcccccccccccccccccccccccccccHHHEEEEHHHHHHHEccc
Coil and Loop (DISEMBL)
MSVVVAFLFLKLFAIATLNISvcngssyvgcVESEREALLSFKQdledpsnrlatwigdgdcckwagvicdnfTGHVLelhlgnpweddhghqakessalvgkinpalldFEHLIYLNLsyndfkgiqiprflgsmgnlrfldlsgagfvgmipnqignlsnlqylnlrpnylgglyvedlgwlydlsllenldlsgvdlskvsngplvTNALRSLLVLQLAgcqlshfpplsvanfsSLVTLDlshnqfdnSLIATQLYGLCNlvfldlsdnnfqgpipdtiqnwtslrhldlssnhfSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVlesldlsnttlsgsltnqigkfkvlnsvdlsensisgqvpwslgklsslryldisnnqlngtvseIHFANLSSLTFFYASrnsltlkanpnwvpvfqleeldlrscylgppfpswlhsqnhlvnldisdsgivdtipnrfWKSITQFNYlslsnnqihgeipnltevsqlgtldlsannlsgqlpllASNVMVLDlsknklsgSILHFVCHETNGTRLTQIINLEdnllageipdcWMNWRYLLVLRLdnnkftgklptsLGALSLLRSLHLRnnnlsgtlpvslgncteletidigenefsgnvpawigerFPRMIILILRsnkfhgvfplELCHLAFLKILVLAGnnlsgtiptCISNFTAMAtflgsdsiytiqypsdfsfpgkffniTEQFVEEELITLEGKTLTFKAVLRLLTNidlsnnkfsgeipAEITVLRELRSLnlshnffsgripenIGAMALLESLdfssnrlegeipkntVNLVFLSHFNISynnlsgevpdeaqfatfdsssyigdeylcgpvLKKLCTVvdengggkdgygvGDVLGWLYVSFSMGFIWWLFGL
Flexible Loop (DISEMBL)
MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTtlsgsltnqiGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNlsgtlpvslGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTnidlsnnkfsgeIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGYGVGDVLGWLYVSFSMGFIWWLFGL
Low Complexity Region (SEG)
MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWlydlsllenldlsGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAlsllrslhlrnnnlsGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVvdengggkdgygvgdvlgWLYVSFSMGFIWWLFGL
Disordered region (IsUnstruct)
**VVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDH*******SALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGYGVGDVLGWLYVSFSMGFIWWLFG*
Disordered Region (DISOPRED)
**VVVAFLFLKLFAIATLNISVCNGS****CVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLG**SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGP*************************GWLYVSFSMGFIWWLFGL
Disordered Region (DISEMBL)
MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGYGVGDVLGWLYVSFSMGFIWWLFGL
Disordered Region (DISPRO)
MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTV************VGDVLGWLYVSFSMGFIWWLFGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGYGVGDVLGWLYVSFSMGFIWWLFGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	960	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.838	0.644	0.305	3e-82
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.801	0.614	0.305	5e-80
Q9FL28	1173	LRR receptor-like serine/	no	no	0.753	0.616	0.302	1e-68
Q9C9H7	847	Receptor-like protein 12	no	no	0.665	0.754	0.315	8e-67
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.813	0.655	0.279	2e-64
O49318	1124	Probable leucine-rich rep	no	no	0.659	0.563	0.305	5e-64
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.666	0.580	0.312	7e-61
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.666	0.563	0.306	7e-61
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.663	0.578	0.316	2e-60
Q9LP24	1120	Probable leucine-rich rep	no	no	0.690	0.591	0.295	3e-55

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  307 bits (786), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 287/939 (30%), Positives = 444/939 (47%), Gaps = 134/939 (14%)

Query: 30  GCVESEREALLSFKQDL------EDPSNRLATWIGDG-DCCKWAGVICDNFTG--HVLEL 80
           G + ++ + LL  K+ L      +DP   L  W  D  + C W GV CDN TG   V+ L
Sbjct: 21  GIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDNINYCSWTGVTCDN-TGLFRVIAL 76

Query: 81  HLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLR 140
           +L                 L G I+P    F++LI+L+LS N+  G  IP  L ++ +L 
Sbjct: 77  NL-------------TGLGLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLE 122

Query: 141 FLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDL 200
            L L      G IP+Q+G+L N++ L +  N L G   E LG L +L +L          
Sbjct: 123 SLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQML---------- 172

Query: 201 SKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLY 260
                               LA C+L+   P  +     + +L L  N  +   I  +L 
Sbjct: 173 -------------------ALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGP-IPAELG 212

Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
              +L     ++N   G IP  +    +L  L+L++N  +  IP  L + S+L+YLSL +
Sbjct: 213 NCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMA 272

Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV 380
           N+LQG I   L  +L ++Q+LDLS N L  +IP  F     L  + L+   LS      +
Sbjct: 273 NQLQGLIPKSL-ADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSI 331

Query: 381 LAIFSGCVSDV-LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSS 439
                 C ++  LE L LS T LSG +  ++ K + L  +DLS NS++G +P +L +L  
Sbjct: 332 ------CSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVE 385

Query: 440 LRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYL 499
           L  L + NN L GT+S    +NL++L +     N+L  K       + +LE L L     
Sbjct: 386 LTDLYLHNNTLEGTLSP-SISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRF 444

Query: 500 GPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEV 558
               P  + +   L  +D+  +     IP    + + + N L L  N++ G +P +L   
Sbjct: 445 SGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNC 503

Query: 559 SQLGTLDLSANNLSGQLP---------------------------LLASNVMVLDLSKNK 591
            QL  LDL+ N LSG +P                           +   N+  ++LS N+
Sbjct: 504 HQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query: 592 LSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTS 651
           L+G+I H +C    G+      ++ +N    EIP    N + L  LRL  N+ TGK+P +
Sbjct: 564 LNGTI-HPLC----GSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWT 618

Query: 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711
           LG +  L  L + +N L+GT+P+ L  C +L  ID+  N  SG +P W+G +  ++  L 
Sbjct: 619 LGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELK 677

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPS 771
           L SN+F    P EL +   L +L L GN+L+G+IP  I N  A+                
Sbjct: 678 LSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL---------------- 721

Query: 772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
                    N+ +      L    GK       L  L  + LS N  +GEIP EI  L++
Sbjct: 722 ------NVLNLDKNQFSGSLPQAMGK-------LSKLYELRLSRNSLTGEIPVEIGQLQD 768

Query: 832 LRS-LNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNL 890
           L+S L+LS+N F+G IP  IG ++ LE+LD S N+L GE+P +  ++  L + N+S+NNL
Sbjct: 769 LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNL 828

Query: 891 SGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDEN 929
            G++  + QF+ + + S++G+  LCG  L + C  V  N
Sbjct: 829 GGKL--KKQFSRWPADSFLGNTGLCGSPLSR-CNRVRSN 864

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  300 bits (767), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 273/894 (30%), Positives = 417/894 (46%), Gaps = 125/894 (13%)

Query: 58  GDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYL 117
           G    C W GV C      ++ L+L                 L G I+P++  F +LI++
Sbjct: 56  GSPSYCNWTGVTCGGR--EIIGLNL-------------SGLGLTGSISPSIGRFNNLIHI 100

Query: 118 NLSYNDFKGI------------------------QIPRFLGSMGNLRFLDLSGAGFVGMI 153
           +LS N   G                          IP  LGS+ NL+ L L      G I
Sbjct: 101 DLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTI 160

Query: 154 PNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS--LLENLDLSGVDLSKVSNGPLVTN 211
           P   GNL NLQ L L    L GL     G L  L   +L++ +L G   +++ N      
Sbjct: 161 PETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGN------ 214

Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271
              SL +   A  +L+   P  +    +L TL+L  N F    I +QL  L ++ +L+L 
Sbjct: 215 -CTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGE-IPSQLGDLVSIQYLNLI 272

Query: 272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL 331
            N  QG IP  +    +L+ LDLSSN+ + +I E   + ++LE+L L+ NRL G +   +
Sbjct: 273 GNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTI 332

Query: 332 LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDV 391
             N +S++ L LS  +L  +IP                            A  S C S  
Sbjct: 333 CSNNTSLKQLFLSETQLSGEIP----------------------------AEISNCQS-- 362

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           L+ LDLSN TL+G + + + +   L ++ L+ NS+ G +  S+  L++L+   + +N L 
Sbjct: 363 LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLE 422

Query: 452 GTV-SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
           G V  EI F  L  L   Y   N  + +         +L+E+D     L    PS +   
Sbjct: 423 GKVPKEIGF--LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL 480

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSAN 569
             L  L + ++ +V  IP     +  Q   + L++NQ+ G IP+    ++ L    +  N
Sbjct: 481 KDLTRLHLRENELVGNIPASLG-NCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNN 539

Query: 570 NLSGQLP---LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD 626
           +L G LP   +   N+  ++ S NK +GSI   +C    G+      ++ +N   G+IP 
Sbjct: 540 SLQGNLPDSLINLKNLTRINFSSNKFNGSI-SPLC----GSSSYLSFDVTENGFEGDIPL 594

Query: 627 CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686
                  L  LRL  N+FTG++P + G +S L  L +  N+LSG +PV LG C +L  ID
Sbjct: 595 ELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHID 654

Query: 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
           +  N  SG +P W+G + P +  L L SNKF G  P E+  L  +  L L GN+L+G+IP
Sbjct: 655 LNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIP 713

Query: 747 TCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLR 806
             I N  A+                         N+ E  +   L +  GK       L 
Sbjct: 714 QEIGNLQALNAL----------------------NLEENQLSGPLPSTIGK-------LS 744

Query: 807 LLTNIDLSNNKFSGEIPAEITVLRELRS-LNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
            L  + LS N  +GEIP EI  L++L+S L+LS+N F+GRIP  I  +  LESLD S N+
Sbjct: 745 KLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQ 804

Query: 866 LEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVL 919
           L GE+P    ++  L + N+SYNNL G++  + QF+ + + +++G+  LCG  L
Sbjct: 805 LVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  261 bits (668), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 229/758 (30%), Positives = 365/758 (48%), Gaps = 35/758 (4%)

Query: 175 GLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV 234
           G+  +  G +  +SLLE   L GV    ++N       L  L VL L     +   P  +
Sbjct: 65  GITCDSTGHVVSVSLLEK-QLEGVLSPAIAN-------LTYLQVLDLTSNSFTGKIPAEI 116

Query: 235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDL 294
              + L  L L  N F  S I + ++ L N+ +LDL +N   G +P+ I   +SL  +  
Sbjct: 117 GKLTELNQLILYLNYFSGS-IPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGF 175

Query: 295 SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR 354
             N+ +  IPE L     L+    + N L G I  V +  L+++  LDLS N+L  KIPR
Sbjct: 176 DYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIP-VSIGTLANLTDLDLSGNQLTGKIPR 234

Query: 355 SFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFK 414
            F    NL+S+ L+   L       + A    C S  L  L+L +  L+G +  ++G   
Sbjct: 235 DFGNLLNLQSLVLTENLLE----GDIPAEIGNCSS--LVQLELYDNQLTGKIPAELGNLV 288

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474
            L ++ + +N ++  +P SL +L+ L +L +S N L G +SE     L SL       N+
Sbjct: 289 QLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISE-EIGFLESLEVLTLHSNN 347

Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
            T +   +   +  L  L +    +    P+ L    +L NL   D+ +   IP+    +
Sbjct: 348 FTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSI-SN 406

Query: 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP---LLASNVMVLDLSKNK 591
            T    L LS+NQ+ GEIP       L  + +  N+ +G++P      SN+  L ++ N 
Sbjct: 407 CTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNN 466

Query: 592 LSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTS 651
           L+G++   +       +  +I+ +  N L G IP    N + L +L L +N FTG++P  
Sbjct: 467 LTGTLKPLIGK----LQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPRE 522

Query: 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711
           +  L+LL+ L + +N+L G +P  + +   L  +D+  N+FSG +PA    +   +  L 
Sbjct: 523 MSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF-SKLESLTYLS 581

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP-TCISNFTAMATFLG-SDSIYTIQY 769
           L+ NKF+G  P  L  L+ L    ++ N L+GTIP   +++   M  +L  S+++ T   
Sbjct: 582 LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI 641

Query: 770 PSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEI-TV 828
           P +    GK   + E  +   L +  G         + +  +D S N  SG IP E+   
Sbjct: 642 PKEL---GKLEMVQEIDLSNNLFS--GSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQG 696

Query: 829 LRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN 888
           +  + SLNLS N FSG IP++ G M  L SLD SSN L GEIP++  NL  L H  ++ N
Sbjct: 697 MDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASN 756

Query: 889 NLSGEVPDEAQFATFDSSSYIGDEYLCGPVLK-KLCTV 925
           NL G VP+   F   ++S  +G+  LCG     K CT+
Sbjct: 757 NLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTI 794

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  256 bits (653), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 214/678 (31%), Positives = 325/678 (47%), Gaps = 39/678 (5%)

Query: 255 IATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314
           I + L  L +L  ++L  N F G IP +I N   LRHL L++N  +  IP  L   SRL 
Sbjct: 126 IPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLV 185

Query: 315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH 374
            L L SNRL G+I   +  +L  +++L L+ N L  +IP S     NL  + L+  QL  
Sbjct: 186 NLELFSNRLVGKIPDSI-GDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQL-- 242

Query: 375 QKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSL 434
             V +V A     +   L  +   N +LSG++         L+   LS N+ +   P+ +
Sbjct: 243 --VGEVPASIGNLIE--LRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDM 298

Query: 435 GKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKAN-PNWVPVFQLEELD 493
               +L Y D+S N  +G   +     + SL   Y   N  T      N     +L++L 
Sbjct: 299 SIFHNLEYFDVSYNSFSGPFPK-SLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLI 357

Query: 494 LRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP 553
           L    L  P P  +    +L  LDIS +     IP    K +    +L LS N + GE+P
Sbjct: 358 LGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLL-HLDLSKNNLEGEVP 416

Query: 554 NLTEVSQLGTLDLSANNLSGQLPLLASNVMV--LDLSKNKLSGSILHFVCHETNGTRLTQ 611
               + +L T+ LS N+ S          ++  LDL+ N   G I + +C      +L+ 
Sbjct: 417 AC--LWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMIC------KLSS 468

Query: 612 I--INLEDNLLAGEIPDCWMNWR-YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNL 668
           +  ++L +NL +G IP C  N+   +  L L +N F+G LP      + L SL + +N L
Sbjct: 469 LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQL 528

Query: 669 SGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHL 728
            G  P SL NC  LE +++  N+     P+W+ E  P + +L LRSNKF+G        +
Sbjct: 529 EGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASI 587

Query: 729 AF--LKILVLAGNNLSGTIPTC-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQ 785
            F  L+I+ ++ NN SGT+P    SN+  M T       Y  +          F+   + 
Sbjct: 588 GFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTE----------FWRYADS 637

Query: 786 FVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR 845
           +  E  +  +G  ++F+ + R    ID S NK +G IP  +  L+ELR LNLS N F+  
Sbjct: 638 YYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSV 697

Query: 846 IPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDS 905
           IP  +  +  LE+LD S N+L G+IP++   L FLS+ N S+N L G VP   QF     
Sbjct: 698 IPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKC 757

Query: 906 SSYIGDEYLCGPVLKKLC 923
           SS++ +  L G  L+ +C
Sbjct: 758 SSFLDNPGLYG--LEDIC 773

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  248 bits (632), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 270/965 (27%), Positives = 405/965 (41%), Gaps = 184/965 (19%)

Query: 32  VESEREALLSFKQDLEDPSN-RLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDH 90
           + SE  +L+SFK+ LE+PS             C W GV C                    
Sbjct: 23  LSSETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC-------------------- 62

Query: 91  GHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFV 150
                    L+G++N           L+L     +G QIP+ + S+ NLR L L+G  F 
Sbjct: 63  ---------LLGRVN----------SLSLPSLSLRG-QIPKEISSLKNLRELCLAGNQFS 102

Query: 151 GMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVT 210
           G IP +I NL +LQ                            LDLSG             
Sbjct: 103 GKIPPEIWNLKHLQ---------------------------TLDLSG------------- 122

Query: 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
           N+L  LL             P  ++    L+ LDLS N F  SL  +    L  L  LD+
Sbjct: 123 NSLTGLL-------------PRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDV 169

Query: 271 SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSV 330
           S+N+  G IP  I   ++L +L +  N FS  IP  +   S L+  +  S    G +   
Sbjct: 170 SNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKE 229

Query: 331 LLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSD 390
            +  L  +  LDLS+N L+  IP+SF    NL  ++L    +S + +  +      C S 
Sbjct: 230 -ISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNL----VSAELIGLIPPELGNCKS- 283

Query: 391 VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
            L+SL LS  +LSG L  ++ +  +L +     N +SG +P  +GK   L  L ++NN+ 
Sbjct: 284 -LKSLMLSFNSLSGPLPLELSEIPLL-TFSAERNQLSGSLPSWMGKWKVLDSLLLANNRF 341

Query: 451 NGTVS-EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHS 509
           +G +  EI    +                          L+ L L S  L    P  L  
Sbjct: 342 SGEIPHEIEDCPM--------------------------LKHLSLASNLLSGSIPRELCG 375

Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSAN 569
              L  +D+S + +  TI   F    +    L L+NNQI+G IP       L  LDL +N
Sbjct: 376 SGSLEAIDLSGNLLSGTIEEVF-DGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSN 434

Query: 570 NLSGQLPL---LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD 626
           N +G++P     ++N+M    S N+L G   +      N   L +++ L DN L GEIP 
Sbjct: 435 NFTGEIPKSLWKSTNLMEFTASYNRLEG---YLPAEIGNAASLKRLV-LSDNQLTGEIPR 490

Query: 627 CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686
                  L VL L+ N F GK+P  LG  + L +L L +NNL G +P  +    +L+ + 
Sbjct: 491 EIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLV 550

Query: 687 IGENEFSGNVPAW--------------------------------IGERFPRMIILI--- 711
           +  N  SG++P+                                 I E     ++L+   
Sbjct: 551 LSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEIS 610

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPS 771
           L +N   G  P  L  L  L IL L+GN L+G+IP  + N   +     +++      P 
Sbjct: 611 LSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPE 670

Query: 772 DFSFPGKF--FNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVL 829
            F   G     N+T+         L+G        L+ LT++DLS N  SGE+ +E++ +
Sbjct: 671 SFGLLGSLVKLNLTKN-------KLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTM 723

Query: 830 RELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNN 889
            +L  L +  N F+G IP  +G +  LE LD S N L GEIP     L  L   N++ NN
Sbjct: 724 EKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNN 783

Query: 890 LSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGYGV-GDVLGWLYVS 948
           L GEVP +        +   G++ LCG V+   C +  E    +  +G+ G +LG+  + 
Sbjct: 784 LRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKI--EGTKLRSAWGIAGLMLGFTIIV 841

Query: 949 FSMGF 953
           F   F
Sbjct: 842 FVFVF 846

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  246 bits (629), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 211/690 (30%), Positives = 332/690 (48%), Gaps = 57/690 (8%)

Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
           + +LDLS     + +++  + GL NLV+L+L+ N   G IP  I N + L  + L++N F
Sbjct: 87  VTSLDLSSMNL-SGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQF 145

Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRF 359
              IP  +NK S+L   ++ +N+L G +   +  +L +++ L    N L   +PRS    
Sbjct: 146 GGSIPVEINKLSQLRSFNICNNKLSGPLPEEI-GDLYNLEELVAYTNNLTGPLPRSLGNL 204

Query: 360 CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSV 419
             L +        S    +++      C++  L+ L L+   +SG L  +IG    L  V
Sbjct: 205 NKLTTFRAGQNDFSGNIPTEI----GKCLN--LKLLGLAQNFISGELPKEIGMLVKLQEV 258

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTV-SEIHFANLSSLTFFYASRNSLTLK 478
            L +N  SG +P  +G L+SL  L +  N L G + SEI   N+ SL   Y  +N L   
Sbjct: 259 ILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEI--GNMKSLKKLYLYQNQLNGT 316

Query: 479 ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQF 538
                  + ++ E+D     L    P  L   + L  L +  + +   IPN   K +   
Sbjct: 317 IPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSK-LRNL 375

Query: 539 NYLSLSNNQIHGEIP----NLTEVSQLGTLDLSANNLSGQLPL---LASNVMVLDLSKNK 591
             L LS N + G IP    NLT + QL    L  N+LSG +P    L S + V+D S+N+
Sbjct: 376 AKLDLSINSLTGPIPPGFQNLTSMRQL---QLFHNSLSGVIPQGLGLYSPLWVVDFSENQ 432

Query: 592 LSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTS 651
           LSG I  F+C ++N      ++NL  N + G IP   +  + LL LR+  N+ TG+ PT 
Sbjct: 433 LSGKIPPFICQQSN----LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTE 488

Query: 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711
           L  L  L ++ L  N  SG LP  +G C +L+ + +  N+FS N+P  I  +   ++   
Sbjct: 489 LCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI-SKLSNLVTFN 547

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPS 771
           + SN   G  P E+ +   L+ L L+ N+  G++P  + +   +     S++ ++   P 
Sbjct: 548 VSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIP- 606

Query: 772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
                   F I                      L  LT + +  N FSG IP ++ +L  
Sbjct: 607 --------FTIGN--------------------LTHLTELQMGGNLFSGSIPPQLGLLSS 638

Query: 832 LR-SLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNL 890
           L+ ++NLS+N FSG IP  IG + LL  L  ++N L GEIP    NL  L   N SYNNL
Sbjct: 639 LQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNL 698

Query: 891 SGEVPDEAQFATFDSSSYIGDEYLCGPVLK 920
           +G++P    F     +S++G++ LCG  L+
Sbjct: 699 TGQLPHTQIFQNMTLTSFLGNKGLCGGHLR 728

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  236 bits (602), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 217/695 (31%), Positives = 328/695 (47%), Gaps = 55/695 (7%)

Query: 235 ANFSS---LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRH 291
           +N+SS   +++L+LS       L +  + GL +L  LDLS N   G IP  I N +SL  
Sbjct: 67  SNYSSDPEVLSLNLSSMVLSGKL-SPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEI 125

Query: 292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK 351
           L L++N F   IP  + K   LE L + +NR+ G +  V + NL S+  L    N +  +
Sbjct: 126 LKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLP-VEIGNLLSLSQLVTYSNNISGQ 184

Query: 352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIG 411
           +PRS      L S       +S    S++     GC S V+  L L+   LSG L  +IG
Sbjct: 185 LPRSIGNLKRLTSFRAGQNMISGSLPSEI----GGCESLVM--LGLAQNQLSGELPKEIG 238

Query: 412 KFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYAS 471
             K L+ V L EN  SG +P  +   +SL  L +  NQL G + +    +L SL F Y  
Sbjct: 239 MLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPK-ELGDLQSLEFLYLY 297

Query: 472 RNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF 531
           RN L          +    E+D     L    P  L +   L  L + ++ +  TIP   
Sbjct: 298 RNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVEL 357

Query: 532 WKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDL 587
             ++   + L LS N + G IP     +  L  L L  N+LSG +P      S++ VLD+
Sbjct: 358 -STLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDM 416

Query: 588 SKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK 647
           S N LSG I  ++C  +N      I+NL  N L+G IP      + L+ LRL  N   G+
Sbjct: 417 SDNHLSGRIPSYLCLHSN----MIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGR 472

Query: 648 LPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707
            P++L     + ++ L  N   G++P  +GNC+ L+ + + +N F+G +P  IG    ++
Sbjct: 473 FPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-MLSQL 531

Query: 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI 767
             L + SNK  G  P E+ +   L+ L +  NN SGT+P+ + +   +     S++    
Sbjct: 532 GTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNN---- 587

Query: 768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEIT 827
                                     L G        L  LT + +  N F+G IP E+ 
Sbjct: 588 -------------------------NLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELG 622

Query: 828 VLRELR-SLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNIS 886
            L  L+ +LNLS+N  +G IP  +  + +LE L  ++N L GEIP +  NL  L  +N S
Sbjct: 623 SLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFS 682

Query: 887 YNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKK 921
           YN+L+G +P          SS+IG+E LCGP L +
Sbjct: 683 YNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQ 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  236 bits (602), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 216/704 (30%), Positives = 323/704 (45%), Gaps = 64/704 (9%)

Query: 255 IATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314
           I+ ++ GL  L  L L  N+F G IP ++   T L  + L  N  S  +P  +   + LE
Sbjct: 84  ISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLE 143

Query: 315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH 374
             +++ NRL G I   L    SS+Q LD+S N    +IP   +    L+ ++LS  QL+ 
Sbjct: 144 VFNVAGNRLSGEIPVGLP---SSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTG 200

Query: 375 QKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSL 434
           +  + +  + S      L+ L L    L G+L + I     L  +  SEN I G +P + 
Sbjct: 201 EIPASLGNLQS------LQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAY 254

Query: 435 GKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQ--LEEL 492
           G L  L  L +SNN  +GTV    F N +SLT      N+ +    P      +  L+ L
Sbjct: 255 GALPKLEVLSLSNNNFSGTVPFSLFCN-TSLTIVQLGFNAFSDIVRPETTANCRTGLQVL 313

Query: 493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552
           DL+   +   FP WL +   L NLD+S +     IP     ++ +   L L+NN + GEI
Sbjct: 314 DLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIG-NLKRLEELKLANNSLTGEI 372

Query: 553 PNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQI 612
           P   E+ Q G+LD                  VLD   N L G I  F+ +     +  ++
Sbjct: 373 P--VEIKQCGSLD------------------VLDFEGNSLKGQIPEFLGY----MKALKV 408

Query: 613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTL 672
           ++L  N  +G +P   +N + L  L L  N   G  P  L AL+ L  L L  N  SG +
Sbjct: 409 LSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAV 468

Query: 673 PVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK 732
           PVS+ N + L  +++  N FSG +PA +G  F ++  L L      G  P+EL  L  ++
Sbjct: 469 PVSISNLSNLSFLNLSGNGFSGEIPASVGNLF-KLTALDLSKQNMSGEVPVELSGLPNVQ 527

Query: 733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSF----------------- 775
           ++ L GNN SG +P   S+  ++     S + ++ + P  F F                 
Sbjct: 528 VIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGS 587

Query: 776 -PGKFFNITE-QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELR 833
            P +  N +  + +E     L G      + L  L  +DL  N  SGEIP EI+    L 
Sbjct: 588 IPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLN 647

Query: 834 SLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN----TVNLVFLSHFNISYNN 889
           SL+L HN  SG IP +   ++ L  +D S N L GEIP +    + NLV+   FN+S NN
Sbjct: 648 SLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVY---FNVSSNN 704

Query: 890 LSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGK 933
           L GE+P        ++S + G+  LCG  L + C      G  K
Sbjct: 705 LKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESSTAEGKKK 748

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 219/692 (31%), Positives = 319/692 (46%), Gaps = 55/692 (7%)

Query: 232 LSVANFSSLVTLDLSHNQFDNSL--IATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
           ++  +  ++ ++DL+      +L  +  +L+GL  L   ++S N   GPIP  +    SL
Sbjct: 61  IACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKL---NVSTNFISGPIPQDLSLCRSL 117

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
             LDL +N F  +IP  L     L+ L L  N L G I    + NLSS+Q L +  N L 
Sbjct: 118 EVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQ-IGNLSSLQELVIYSNNLT 176

Query: 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ 409
             IP S ++   LR I       S    S++    SGC S  L+ L L+   L GSL  Q
Sbjct: 177 GVIPPSMAKLRQLRIIRAGRNGFSGVIPSEI----SGCES--LKVLGLAENLLEGSLPKQ 230

Query: 410 IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
           + K + L  + L +N +SG++P S+G +S L  L +  N   G++       L+ +   Y
Sbjct: 231 LEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPR-EIGKLTKMKRLY 289

Query: 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPN 529
              N LT +       +    E+D     L    P       +L  L + ++ ++  IP 
Sbjct: 290 LYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIP- 348

Query: 530 RFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLA---SNVMVL 585
           R    +T    L LS N+++G IP  L  +  L  L L  N L G++P L    SN  VL
Sbjct: 349 RELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVL 408

Query: 586 DLSKNKLSGSI-LHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKF 644
           D+S N LSG I  HF   +T       +++L  N L+G IP      + L  L L +N+ 
Sbjct: 409 DMSANSLSGPIPAHFCRFQT-----LILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQL 463

Query: 645 TGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERF 704
           TG LP  L  L  L +L L  N LSG +   LG    LE + +  N F+G +P  IG   
Sbjct: 464 TGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGN-L 522

Query: 705 PRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSI 764
            +++   + SN+  G  P EL     ++ L L+GN  SG I   +     +     SD+ 
Sbjct: 523 TKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNR 582

Query: 765 YTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPA 824
            T + P  F                               L  L  + L  N  S  IP 
Sbjct: 583 LTGEIPHSF-----------------------------GDLTRLMELQLGGNLLSENIPV 613

Query: 825 EITVLRELR-SLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHF 883
           E+  L  L+ SLN+SHN  SG IP+++G + +LE L  + N+L GEIP +  NL+ L   
Sbjct: 614 ELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLIC 673

Query: 884 NISYNNLSGEVPDEAQFATFDSSSYIGDEYLC 915
           NIS NNL G VPD A F   DSS++ G+  LC
Sbjct: 674 NISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  217 bits (553), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 224/757 (29%), Positives = 349/757 (46%), Gaps = 94/757 (12%)

Query: 34  SEREALLSFKQDLEDPSNRLATWIGDGD------CCKWAGVICDNFTGHVLELHLGNPWE 87
           +E  ALL +K    + S++L++W+ D +      C  W GV C N  G + EL+L N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTN--- 86

Query: 88  DDHGHQAKESSALVGKINP-ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSG 146
                     + + G       +   +L Y++LS N   G   P+F G++  L + DLS 
Sbjct: 87  ----------TGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLST 135

Query: 147 AGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG---WLYDLSLLENLDLSGVDLSKV 203
               G I   +GNL NL  L L  NYL  +   +LG    + DL+L +N  L+G   S +
Sbjct: 136 NHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQN-KLTGSIPSSL 194

Query: 204 SNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC 263
            N       L++L+VL L    L+   P  + N  S+  L LS N+   S+ +T L  L 
Sbjct: 195 GN-------LKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPST-LGNLK 246

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           NL+ L L +N   G IP  I N  S+ +L LS N  +  IP  L     L  LSL  N L
Sbjct: 247 NLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYL 306

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
            G I    L N+ S+  L+LS N+L   IP S     NL+++++  + L    ++ V+  
Sbjct: 307 TGGIPPK-LGNIESMIDLELSNNKLTGSIPSSLG---NLKNLTI--LYLYENYLTGVIPP 360

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
             G +  +++ L L+N  L+GS+ +  G  K L  + L  N ++G +P  LG + S+  L
Sbjct: 361 ELGNMESMID-LQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINL 419

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPF 503
           D+S N+L G+V +  F N + L   Y   N L+    P       L  L L +      F
Sbjct: 420 DLSQNKLTGSVPD-SFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFF 478

Query: 504 PSWLHSQNHLVNLDISDSGIVDTIP----------------NRFWKSITQ-------FNY 540
           P  +     L N+ +  + +   IP                N+F   I +        N+
Sbjct: 479 PETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNF 538

Query: 541 LSLSNNQIHGEI-PNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHF 599
           +  S+N+ HGEI  N  +  +LG L +S NN++G +P    N+                 
Sbjct: 539 IDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNM----------------- 581

Query: 600 VCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR 659
                  T+L + ++L  N L GE+P+   N   L  LRL+ N+ +G++P  L  L+ L 
Sbjct: 582 -------TQLVE-LDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLE 633

Query: 660 SLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG 719
           SL L +NN S  +P +  +  +L  +++  N+F G++P     +  ++  L L  N+  G
Sbjct: 634 SLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRL--SKLTQLTQLDLSHNQLDG 691

Query: 720 VFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMA 756
             P +L  L  L  L L+ NNLSG IPT      A+ 
Sbjct: 692 EIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALT 728

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	960
224072885	1024	predicted protein [Populus trichocarpa]	0.954	0.894	0.483	0.0
315436720	1020	verticillium wilt resistance-like protei	0.978	0.920	0.470	0.0
255539443	1054	serine-threonine protein kinase, plant-t	0.965	0.879	0.441	0.0
255581850	1082	leucine-rich repeat receptor protein kin	0.968	0.859	0.439	0.0
350284759	980	receptor-like protein [Malus micromalus]	0.935	0.916	0.443	0.0
255543977	1075	serine/threonine-protein kinase bri1, pu	0.918	0.820	0.440	0.0
209970603	1038	AM19-5p [Malus floribunda]	0.971	0.898	0.435	0.0
209970607	1045	M18S-3Ap [Malus floribunda]	0.972	0.893	0.432	0.0
350284769	1041	receptor-like protein [Malus x domestica	0.971	0.896	0.440	0.0
350284767	965	receptor-like protein [Malus sieversii]	0.941	0.936	0.445	0.0

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/984 (48%), Positives = 635/984 (64%), Gaps = 68/984 (6%)

Query: 25  GSSYVGCVESEREALLSFKQDLEDPSNRLATWIG-DGDCCKWAGVICDNFTGHVLELHLG 83
           GS   GC + ER+ALL FK DL+DPSNRLA+W G  GDCC W GVICDN TGHV+EL L 
Sbjct: 31  GSFTQGCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIELRLR 90

Query: 84  NPWEDDHGHQAKESSA--------LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGS 135
           +    D+   +  S+         L G+INP+L+  +HL YL+L  NDF G+QIP+F+G 
Sbjct: 91  SISFADYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKFIGL 150

Query: 136 MGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDL 195
           +G+L+ LDLS AGF G IP+ +GNLS+L YLNL  +Y     VE+L WL  LS LE LDL
Sbjct: 151 IGSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLH-DYYSQFNVENLNWLSQLSSLEFLDL 209

Query: 196 SGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLI 255
           S V L  V N   V N L SL+ L L+ CQL   PP+   NFSSL  LDLS N  D S I
Sbjct: 210 SLVHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAI 269

Query: 256 AT-----QLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310
           +       +  L  L+ L+L++NNFQGPIP+ +QN T L+ LDLS NHFS  IPEWL  F
Sbjct: 270 SMLNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGF 329

Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN---ELEWKIPRSFSRFCNLRSISL 367
             L+ L+L SN LQG +SS +  N++S+ SLDLS N   + E  IP SF + CNLR++SL
Sbjct: 330 EHLKLLNLGSNNLQGVLSSAI-GNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSL 388

Query: 368 SGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
           S ++L +Q +++VL +  GCVS+ +ESLDL+   L G LTN +GKF+ L  + L  NSIS
Sbjct: 389 SNVKL-NQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSIS 447

Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGT------------------------VSEIHFANLS 463
           G +P +LG+L SLR L +S+N+LNGT                        VSE+HFANL 
Sbjct: 448 GPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLK 507

Query: 464 SLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGI 523
           +L  F A+ N L L+ +P+W+P  QL  +DLRS  +GP FP W+    HL  LDIS+S I
Sbjct: 508 NLRNFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSI 566

Query: 524 VDTIPNRFWKSITQFNYLSLSNNQIHGEIPN---LTEVSQLGTLDLSANNLSGQLPLLAS 580
             TIP  FW    +  YL+LS+NQI G IP+   L   +    +DLS+N   G LP + S
Sbjct: 567 SSTIPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFS 626

Query: 581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD 640
           NV  LDLS N  SGS+L+F+CH+ +  +  Q++NL +NLL+G IPDCW +W+YL+ ++L 
Sbjct: 627 NVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLS 686

Query: 641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWI 700
           NNK +G +P S+GALSLL SLH+RN++LSG LP+SL NCT+L T+D+ ENE  G++PAWI
Sbjct: 687 NNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWI 746

Query: 701 GERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLG 760
           G+RF  M++L +R+NKFHG  P ELC+LA L+IL LA N LS +IPTC +  +AMAT   
Sbjct: 747 GKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMAT--R 804

Query: 761 SDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG 820
           +DS+  I   S  S    F N+        L+ ++GK + +  +L+ + +IDLS+N   G
Sbjct: 805 NDSLGKIYLDSGSS---TFDNV--------LLVMKGKVVEYSTILKFVRSIDLSSNALCG 853

Query: 821 EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFL 880
           EIP E+T L EL+SLNLS N  +GRIPE IG++  LES+DFS N+L GEIP++  +L FL
Sbjct: 854 EIPEEVTRLSELQSLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFL 913

Query: 881 SHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVD----ENGGGKDGY 936
           SH N+S N L G +P   Q  +F  SS+ G+E LCGP L K C+V +    E+   +DG 
Sbjct: 914 SHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNE-LCGPPLSKNCSVDNKFHVEHEREEDGN 972

Query: 937 GVGDVLGWLYVSFSMGFIWWLFGL 960
           G+     W YVS  +GFI   +G+
Sbjct: 973 GLKG--RWFYVSMVLGFIVGFWGV 994

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/993 (47%), Positives = 629/993 (63%), Gaps = 54/993 (5%)

Query: 1   MSVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDG 60
           M VVV  +FL L    +    VC  +  V C E ER+ALL  KQDL DPS RLA+W  + 
Sbjct: 7   MKVVVTSIFLALLIETSTFEYVCAANRNVSCPEVERQALLKLKQDLIDPSGRLASWGTNL 66

Query: 61  DCCKWAGVICDNFTGHVLELHLGNPWEDDHG----HQAKESSALVGKINPALLDFEHLIY 116
           +CC W+GVICDN TG+V++L L NP +  +G     +A       GKINP+LLD +HL Y
Sbjct: 67  NCCNWSGVICDNLTGNVIQLRLRNPLDPYNGFYIPSEAYAKMWFSGKINPSLLDLKHLRY 126

Query: 117 LNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGL 176
           L+LS ++F GIQIP FLGSM  LR+L+LS AGF G++P Q+GNL+NL  L+L  ++   +
Sbjct: 127 LDLSGSNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLH-DFSSLV 185

Query: 177 YVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVAN 236
           Y E+L WL  L  L++LDLS V+LSK S+   VTN L SL+ + L+GCQL   P  +  N
Sbjct: 186 YAENLQWLSHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGCQLHRLPLQADVN 245

Query: 237 FSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSS 296
           FSSL  LDLS N F N LI   ++ L +L+ LDLS NNFQG +P  +++ +SLR+L+L  
Sbjct: 246 FSSLSILDLSSNSFSNPLIPGWIFKLNSLLSLDLSHNNFQGQLPHGLRSLSSLRYLNLYW 305

Query: 297 NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
           N+F   IP WL   + LE+L+L SN   G IS+   +NL+S+ +LDLS NEL   +P S 
Sbjct: 306 NNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISNGF-QNLTSLTTLDLSDNELTGAVPNSM 364

Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAIFS--GCVSDVLESLDLSNTTLSGSLTNQIGKFK 414
              C+L+ I LSG+ LS + +S++L   S  GC+ + LESL L +  + G LT++I  FK
Sbjct: 365 GSLCSLKKIKLSGLHLS-RDLSEILQALSSPGCLLNGLESLYLDSCEIFGHLTDRILLFK 423

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT--------------------- 453
            L  + LS NSISG +P SLG L+SLR LD+S N++NGT                     
Sbjct: 424 NLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWLSHNML 483

Query: 454 ---VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
              VSE+HFANL+ L  F AS N L L+A+P WVP FQL  + L S +LGP FPSWL SQ
Sbjct: 484 EGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGPKFPSWLRSQ 543

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN---LTEVSQLGTLDLS 567
              V LDIS +GI+DT PN FW   T +  L+LS+NQI+GE+P+    + V+ L  +DLS
Sbjct: 544 RDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTSPVADLVYVDLS 603

Query: 568 ANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC 627
            N+  G LP L+S V  LDLS N  SG I + +C +       + ++L DN L+GEIPDC
Sbjct: 604 FNHFDGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHLSGEIPDC 663

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
           WMNW  ++ + L+NN  +G +P+S+G+L+LL+SLHLR NNLSG LP SL NCT L  ID+
Sbjct: 664 WMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCTSLLAIDL 723

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT 747
           GEN F GN+P WIGE+    II+ L SN+F G  P  LC L++L IL LA NNLSGTIP 
Sbjct: 724 GENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNNLSGTIPK 783

Query: 748 CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRL 807
           C  N +AMA    S +      P  ++F G F       +E  L+ ++G  L + + L+L
Sbjct: 784 CFMNLSAMAANQNSSN------PISYAF-GHF----GTSLETLLLMIKGILLEYSSTLQL 832

Query: 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867
           +T++DLS+N  +GEIPA +T L  LR LNLS+N   GRIP+NIG + LLES+D S N+L 
Sbjct: 833 VTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLR 892

Query: 868 GEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLC---- 923
           GEIP +   L FLS+ N+S NNL+G++P   Q  +FD SSY G+ +LCGP L ++C    
Sbjct: 893 GEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDISSYDGN-HLCGPPLLEICSTDA 951

Query: 924 TVVDENGGGKDGYGVGDVLGWL--YVSFSMGFI 954
           T   ++   ++  G G  + WL  Y S + GF+
Sbjct: 952 TTSSDHNNNENNEGDGLEVDWLWFYASMAFGFV 984

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1016 (44%), Positives = 614/1016 (60%), Gaps = 89/1016 (8%)

Query: 5   VAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIG-DGDCC 63
           +AFL L +   A L  S    +S V C + ER+ALL  KQDL+DPSNRL++W+  + DCC
Sbjct: 9   LAFLILVIILHAPLYYS----NSDVLCNKIERQALLQSKQDLKDPSNRLSSWVAAELDCC 64

Query: 64  KWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYND 123
           KWAG++CDN TGHV EL+L NP +    H+      ++              YL+LSYN+
Sbjct: 65  KWAGIVCDNLTGHVKELNLRNPLDSLQVHRETYERFMLQASE----------YLDLSYNN 114

Query: 124 FKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN--YLGG--LYVE 179
           F+GI IP F+GS+ +LR+L L  AGF G+IP Q+GNLS+L+ L ++    YLG   LYV+
Sbjct: 115 FEGIPIPSFIGSLASLRYLGLYEAGFEGLIPYQLGNLSSLRELGVQGACVYLGKAKLYVD 174

Query: 180 DLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSS 239
           DL WL  L  L++LDLS V L   S+  LV NAL SL  L L+ C L   PPLS  NF++
Sbjct: 175 DLSWLSRLPSLQHLDLSCVKLRAASDWLLVMNALPSLSELHLSKCNLVVIPPLSDVNFTA 234

Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS------------------------DNNF 275
           L  L++S NQF +S I   ++ L NL  LD+S                         NN 
Sbjct: 235 LSVLEISQNQFGSS-IPNWIFTLTNLTSLDMSFCYFDGPIPNDLSHLTSLLSLDLSVNNL 293

Query: 276 QGPIPDTIQNWTSLRHLDL-SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
            GPIP   QN T LR+L+L   N  S  IPEWL  F +LE L LS   +QG ISS + +N
Sbjct: 294 YGPIPTGFQNLTGLRNLNLYGVNLTSSRIPEWLYDFRQLESLDLSQTNVQGEISSTI-QN 352

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
           L ++ +L L+F +LE  +P++    CNL+ I LSG +L    VS+V   F+GC+S  LE 
Sbjct: 353 LIALVNLKLAFTKLEGTLPQTIGNLCNLQIIRLSGNKLGGD-VSKVFESFAGCISQSLEE 411

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSL-------------- 440
           L       SG + N IG+   L  +DLS+N ISG +P S+G+LSSL              
Sbjct: 412 L---GNNFSGHIGNAIGQLGTLQHLDLSDNFISGSIPESIGRLSSLIWAFLPNNQLTGTL 468

Query: 441 ----------RYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLE 490
                     + +DIS+N L G VSE+HF NL+SLT F AS N L LK +P WVP F+L+
Sbjct: 469 PVTFRNLSNLQTIDISHNLLEGVVSEVHFTNLTSLTAFVASHNHLVLKVSPAWVPPFRLK 528

Query: 491 ELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG 550
           EL LR   LGP FP WL SQ++   LD+S + I D+IP  FW   +   YL+LS+NQI G
Sbjct: 529 ELGLRYWNLGPQFPIWLQSQDYFTYLDLSCTEISDSIPTWFWNLTSHIKYLNLSHNQIPG 588

Query: 551 EIPN-LTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRL 609
           ++P+ L+ +S L T+ L  N   G LP   +++  LDLS N  SGSI  F+C+ T     
Sbjct: 589 QLPSSLSIISMLPTIYLGFNQFKGPLPRFEADISALDLSNNFFSGSITRFLCYPTVVPYS 648

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
            +I++L +N L+GEIPDCWMNW+ L V++L NN  TGK+P+S+G L  LRSL LR N+LS
Sbjct: 649 LRILHLGENQLSGEIPDCWMNWKSLTVIKLGNNNLTGKIPSSIGVLWNLRSLQLRKNSLS 708

Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA 729
           G +P+SLGNCT L T+D+  N+F G VP W+G  FP ++ L LRSN+  G  P E+C L+
Sbjct: 709 GEIPMSLGNCTRLLTLDLAANDFVGKVPDWLGGSFPELLALSLRSNQLTGEIPSEICRLS 768

Query: 730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789
            L+IL  AGNNLSGT+P CI+N T+M T      I+       +S  G ++++ E F+E 
Sbjct: 769 SLQILDFAGNNLSGTVPKCIANLTSMTTVQPRTKIF-------YSSTG-YYSLVEIFLEN 820

Query: 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN 849
             +  +GK + + ++L L+ ++DLS+NK SGEIPAE+T L  L SLNLS N  +G+IP N
Sbjct: 821 AYVVTKGKEVEYDSILTLVKSMDLSSNKISGEIPAELTALLGLMSLNLSGNDLTGQIPNN 880

Query: 850 IGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYI 909
           IG M +LESLD S N++ G IP +     FL++ N+SYN+LSGE+P   Q  + D+SS++
Sbjct: 881 IGDMPVLESLDLSRNQISGNIPPSMAKSHFLNYLNLSYNDLSGEIPSSTQLQSQDASSFV 940

Query: 910 GDEYLCGPVLKKLCTVVD---ENGGGKDGYGVGDVLGWLYVSFSMGFI---WWLFG 959
           G+  LCGP L   CTV +   + G G    G G  +   Y+  ++G +   W +FG
Sbjct: 941 GNNRLCGPPLAISCTVAETPQDTGKGSGNEGEGIKIDEFYLGLTIGSVVGFWGVFG 996

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1049 (43%), Positives = 618/1049 (58%), Gaps = 119/1049 (11%)

Query: 5    VAFLFLKLFAIATLNISVCNGS--SYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDC 62
            V+ LFL   A  T +    +GS  + VGC + EREAL+ FK +L+DPS RLA+W  D +C
Sbjct: 9    VSLLFL--IAATTFSFVHSHGSYNAAVGCNQIEREALMKFKDELQDPSKRLASWGADAEC 66

Query: 63   CKWAGVICDNFTGHVLELHLG-------NPWEDDHGH----QAKESSALVGKINPALLDF 111
            C W GVICDNFTGHV ELHL            D  G+    +  E S+  GK++ +LL+ 
Sbjct: 67   CTWHGVICDNFTGHVTELHLKILSSEEYYSSSDALGYYFYEEYLERSSFRGKVSQSLLNL 126

Query: 112  EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN 171
            +HL YL+LS NDF GIQIP FLGSM +LR L+L GAGF G IP+Q+GNLSNLQYLNL   
Sbjct: 127  KHLNYLDLSNNDFGGIQIPPFLGSMESLRHLNLYGAGFGGRIPHQLGNLSNLQYLNLNAK 186

Query: 172  YL---GGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSH 228
             +     +Y+E L WL  L  LE LD SGVDLSK  N   V N L SL  L L+G +L  
Sbjct: 187  SIYTSAVIYIESLQWLSSLRSLEFLDFSGVDLSKAFNWLDVLNTLPSLGELHLSGSELYP 246

Query: 229  FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTS 288
             P LS  NFSSL+TL+LS N F   ++ + ++ L  L  LDLS NNF G IP  +QN T+
Sbjct: 247  IPLLSNVNFSSLLTLNLSANNF---VVPSWIFRLTTLATLDLSSNNFVGSIPIHLQNITT 303

Query: 289  LRHLDLSSN-------------------------HFSYLIPEWLNKFSRLEYLSLSSNRL 323
            LR L LS +                         +    IP  +   + L  L LS N L
Sbjct: 304  LRELYLSDSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPSTIGNLTSLRSLDLSFNSL 363

Query: 324  QGRISSVLLENLSSIQSLDLSFNELEWKIPRS------------------------FSRF 359
            +  I S +  NL+S++SLDLS N LE  IP +                        F   
Sbjct: 364  EEGIPSAI-GNLTSLKSLDLSRNSLEGDIPSAIGNLASLSSLDLSRNSLEGGIPTWFRNL 422

Query: 360  CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSV 419
            CNLRS+ LS  +LS Q++++V  I SGCVSD+LESL L ++ LSG L++++ KFK L  +
Sbjct: 423  CNLRSLELSINKLS-QEINEVFEILSGCVSDILESLILPSSQLSGHLSDRLVKFKNLAYL 481

Query: 420  DLSENSISGQVPWSLGKL------------------------SSLRYLDISNNQLNGTVS 455
            DL++N ISG +P +LG+L                        S L Y+DISNN L G +S
Sbjct: 482  DLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSKLNYVDISNNSLEGEIS 541

Query: 456  EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQ-LEELDLRSCYLGPPFPSWLHSQNHLV 514
            EIHFANL++L  F AS N L L+ +P+W P FQ +  + L+   +GP FP+W+HS  +L 
Sbjct: 542  EIHFANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWKVGPQFPTWIHSLKYLA 601

Query: 515  NLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLT-EVSQLGTLDLSANNLSG 573
             LD+S+S I  T+P  F    ++   ++LS+NQ+HG IP L+ + S    +DLS+NN  G
Sbjct: 602  YLDLSNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSIDDSDYSLIDLSSNNFGG 661

Query: 574  QLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRY 633
             +P ++SN   LDLS N  SGSI  F+C++    R   ++NL +NL +GEIPDCWMNW Y
Sbjct: 662  SMPFISSNPFGLDLSNNSFSGSISSFLCYKP---RTINVLNLGENLFSGEIPDCWMNWNY 718

Query: 634  LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693
              V+RL NN F+G +P S+G LS L  L++RNNNLSG +P+SL +CT L+ +D+  NE S
Sbjct: 719  TNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLKHCTSLQVLDLSGNELS 778

Query: 694  GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFT 753
            G +  W+G+ F   +IL LR NKFHG  P ELC +  L IL  A NNL+GTIP CI+NFT
Sbjct: 779  GEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFANNNLNGTIPRCINNFT 838

Query: 754  AMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL 813
            A+ +  G+  +   +   D+         T  + E  LI   GK + +   L  + ++D 
Sbjct: 839  ALLS--GTSYLKDGKVLVDYG-------PTLTYSESSLIERNGKLVEYSTTLGFVRSLDF 889

Query: 814  SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873
            SNNK SGEIP E+T LR L  LNLSHN  +GRIPENIGAM  L+ LDFS N+L GEIP++
Sbjct: 890  SNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQILDFSRNQLSGEIPQS 949

Query: 874  TVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTV------VD 927
              +L FL++ N+S N LSG +P   Q  +FDSSS+ G+  LCGP L + C+       ++
Sbjct: 950  MSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNN-LCGPPLTQSCSGDGEKPDIE 1008

Query: 928  ENGGGKDGYGVGDVLGW--LYVSFSMGFI 954
            +      G G  + + W   YVS + GF+
Sbjct: 1009 KRTTEDGGNGSPEAIDWFYFYVSIAPGFV 1037

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/991 (44%), Positives = 594/991 (59%), Gaps = 93/991 (9%)

Query: 2   SVVVAFLFLKLFAIATLNISV--CNGSSYVG--CVESEREALLSFKQDLEDPSNRLATWI 57
           ++ V  L ++  AIAT+  S+  CNG+      C ESER ALL FKQDL+DP+N+LA+W+
Sbjct: 4   TMRVVILLIRFLAIATITFSIGLCNGNPSWPPLCKESERRALLMFKQDLKDPANQLASWV 63

Query: 58  GD--GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLI 115
            +   DCC W  V+CD+ TGH+ ELHL     D         S   GKINP+LL  +HL 
Sbjct: 64  AEEGSDCCSWTRVVCDHMTGHIHELHLNGSDSD-----LDPDSYFGGKINPSLLSLKHLN 118

Query: 116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGG 175
           +L+LSYNDF   +IP F GSM +L  L+L+ + F G+IP+++GNLS+L YLNL   Y   
Sbjct: 119 FLDLSYNDFYTTRIPSFFGSMTSLTHLNLAYSWFDGIIPHKLGNLSSLHYLNLSTLYRSN 178

Query: 176 LYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA 235
           L VE+L W+  LSLL++LDLS V+L K S+   VTN L SL+ L ++ C L   PPL   
Sbjct: 179 LKVENLQWISGLSLLKHLDLSNVNLGKASDWLQVTNMLPSLVELHMSYCHLHQIPPLPTP 238

Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLS 295
           NF+SLV LDLS N F NSL++  ++ L NL+ + LSD  FQGPIP   QN TSLR +DLS
Sbjct: 239 NFTSLVVLDLSGNSF-NSLMSRWVFSLKNLISIHLSDCGFQGPIPSISQNITSLREIDLS 297

Query: 296 SNHFSY-LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR 354
           SN+ S  LIP+WL     LE LSL +N+L G++ S  ++N++ + +L+L +NE    IP 
Sbjct: 298 SNYISLDLIPKWLFNQKFLE-LSLEANQLTGQLPSS-IQNMTGLIALNLGWNEFNSTIPE 355

Query: 355 SFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFK 414
                 N                              LESL LS+  L G +++ IG  K
Sbjct: 356 WLYSLNN------------------------------LESLHLSHNALRGEISSSIGNLK 385

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT--------------------- 453
            L  +DLS NSISG +P SLG LSSL  LDIS NQ NGT                     
Sbjct: 386 SLRHLDLSNNSISGPIPMSLGNLSSLEKLDISVNQFNGTFTEVIDQLKMLTDLDISYNSL 445

Query: 454 ---VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
              VSE+ F+NL  L  F A  NS TLK + +WVP FQLE L L S +LGP +P WL +Q
Sbjct: 446 EGVVSEVSFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQ 505

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
             L  L +S +GI  TIP  FW   +Q  YL+LS NQ++G+I N+        +DLS+N 
Sbjct: 506 TQLKELSLSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIV-AGPSSVVDLSSNQ 564

Query: 571 LSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
            +G LP++ +++  LDLS++  S S+ HF C   +  +   ++NL +NLL G++PDCWM+
Sbjct: 565 FTGALPIVPTSLFFLDLSRSSFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMS 624

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
           W++L  L L+NN  TG +P S+G L  L SLHLRNN+L G LP SL NCT L  +D+ EN
Sbjct: 625 WQHLRFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSEN 684

Query: 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750
            FSG++P WIG+    + +L LRSNKF G  P E+C+L  L+IL LA N LSG IP C  
Sbjct: 685 GFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFH 744

Query: 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTN 810
           N +A+A F  S+S Y   Y         +     +  E  ++  +G  + +  +L  +  
Sbjct: 745 NLSALADF--SESFYPTSY---------WGTNWSELSENAILVTKGIEMEYSRILGFVKV 793

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI 870
           +DLS N   GEIP E+T L  L+SLNLS+N F+GRIP NIG MA LE+LDFS N+L+GEI
Sbjct: 794 MDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSNIGNMAWLETLDFSMNQLDGEI 853

Query: 871 PKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCT------ 924
           P +  NL FLSH N+SYNNL+G +P+  Q  + D SS++G++ LCG  L K C+      
Sbjct: 854 PPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNK-LCGAPLNKNCSTNGVIP 912

Query: 925 --VVDENGGGKDGYGVGDVLGWLYVSFSMGF 953
              V+++GGG  GY + +   W YVS  +GF
Sbjct: 913 PPTVEQDGGG--GYRLLED-EWFYVSLGVGF 940

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1027 (44%), Positives = 608/1027 (59%), Gaps = 145/1027 (14%)

Query: 4    VVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCC 63
            V+  LFL    ++   +  CN     GC++SEREALL+FK  L D SN+LA W+GDGDCC
Sbjct: 15   VITILFLWSLLLSIFPVGFCNA----GCIQSEREALLNFKLHLSDTSNKLANWVGDGDCC 70

Query: 64   KWAGVICDNFTGHVLELHLGNPWEDDH-------GHQAKE-------SSALVGKINPALL 109
            +W+GVIC N TGHVLELHLG P   ++         QA          +AL GKI+P+LL
Sbjct: 71   RWSGVICHNSTGHVLELHLGTPSFSEYTGPGSFYSQQAASLSVEYYARTALAGKISPSLL 130

Query: 110  DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLR 169
            + ++L YL+LS N+F+GI+IP+FLGSM +LR+L+LS AGF GMIP Q+GNLSNLQYL+LR
Sbjct: 131  NLKYLRYLDLSNNNFEGIRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLSNLQYLDLR 190

Query: 170  --------PNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQL 221
                      Y   ++VE+L WL  LS L+ LDLS V+L    +   V N+L SLL L L
Sbjct: 191  VGDVHGFRARYTFNMHVENLHWLSSLSSLKFLDLSYVNLYSF-DWLNVINSLPSLLQLHL 249

Query: 222  AGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
            + CQL        A+F S V L+ S                 +L  LDLS N+FQGPIP+
Sbjct: 250  SRCQLGG------ASFPSTVNLNFS-----------------SLAILDLSVNDFQGPIPN 286

Query: 282  TIQNWTS-LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
            ++QN TS L+ LDL  N F+  +P WL  F+ LE+LSL+SNRLQG ISS L+ N++S+ +
Sbjct: 287  SLQNLTSSLKELDLGYNSFNSSLPNWLYGFTNLEFLSLNSNRLQGNISS-LIGNMTSLIT 345

Query: 341  LDLSFN-ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399
            LDLS N  +   IP SF   CNLRS+ L  + LS QK++ VL I SGC+SD LES  + +
Sbjct: 346  LDLSSNLAISGGIPTSFKHLCNLRSLVLDTVTLS-QKINDVLEILSGCISDELESFSMYS 404

Query: 400  TTLSGSLTNQIGKFKVLNSVDLSENSI--------------------------------- 426
              LSG LT+ +G FK L S+DLS NSI                                 
Sbjct: 405  CQLSGYLTDDLGHFKNLASLDLSYNSISGPIPKSLRHLCNLRSLDLSGNRWSQEINDVLE 464

Query: 427  --------------------SGQVPWSLGKLSSLRYLDISNNQLNGT------------- 453
                                SG +P SLG+++SL  L +S+N+LNGT             
Sbjct: 465  ILSDCPTNVLESLSLSDCELSGPIPSSLGEMASLIRLSLSSNKLNGTLPESFGQLTRLEI 524

Query: 454  -----------VSEIHFANLSSLTFFYAS--RNSLTLKANPNWVPVFQLEELDLRSCYLG 500
                       V+E+HFANL+ L  F  S   N   L+   NW P FQL  L LRS  +G
Sbjct: 525  AFFDGNLLEGEVTEVHFANLTKLFIFDGSMMANGPVLRVGSNWTPPFQLHYLSLRSWKIG 584

Query: 501  PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVS- 559
            P FP+WLHS  +L  LD+S+SGI  TIP  FW   + F Y +LS+NQIHG IPN+  VS 
Sbjct: 585  PQFPAWLHSLRYLEILDLSNSGISSTIPVWFWDMSSNFAYANLSHNQIHGVIPNVPVVSN 644

Query: 560  --QLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLED 617
              ++   D+S+NN  G +P  +SN+  LDLS N  +GSI++F+C++    +  +++NL  
Sbjct: 645  DYRITMFDMSSNNFRGPVPYFSSNLSALDLSSNSFTGSIINFLCYKMQEVKKMEVLNLGG 704

Query: 618  NLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLG 677
            NLL+GEIPDCW++W+ L  + L NNKFTG +P S+G LS L S+H  NN+LSG +P+S+ 
Sbjct: 705  NLLSGEIPDCWLSWQSLTAINLSNNKFTGNIPKSIGTLSFLESVHFANNDLSGDIPLSIQ 764

Query: 678  NCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLA 737
            NC +L T+D   N+  G +P+WIG+  P MIILILR NK HG  P E+C +A L+IL LA
Sbjct: 765  NCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILILRGNKLHGQIPEEICRMASLQILDLA 824

Query: 738  GNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK 797
             NN S  IP+C SNF+ M     +DS  ++ +      P          ++  ++ ++G+
Sbjct: 825  DNNFSSMIPSCFSNFSGMVKV--NDSFGSLTFDQSNVGPSPI------LIDSAILVIKGR 876

Query: 798  TLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLE 857
               +  +L  +  IDLSNN  SGEIP  IT L  L+SL+ S N  +GRIP++IGAM  LE
Sbjct: 877  VAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSLSFSQNSLTGRIPKDIGAMQSLE 936

Query: 858  SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGP 917
            S+DFS N L GEIP++  +L FLSH N+S N L+G++P   Q   FD SS++ D  LCGP
Sbjct: 937  SIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIPSGTQLRGFDPSSFM-DNDLCGP 995

Query: 918  VLKKLCT 924
             L   C+
Sbjct: 996  PLPLNCS 1002

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1014 (43%), Positives = 595/1014 (58%), Gaps = 81/1014 (7%)

Query: 1   MSVVVAFL-FLKLFAIATLNISVCNGSSYVG--CVESEREALLSFKQDLEDPSNRLATWI 57
           M VV+  + FL   A  T +  +CNG+      C +SER+ALL FKQDL+DP+NRL++W+
Sbjct: 5   MRVVLLLIRFLAAIATITFSFGLCNGNPDWPPLCKDSERQALLMFKQDLKDPANRLSSWV 64

Query: 58  G--DGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLI 115
              D DCC W GV+CD+ TGH+ ELHL     +        +S   GKINP+LL  +HL 
Sbjct: 65  AEEDSDCCSWTGVVCDHITGHIHELHL-----NSSNFDWYINSFFGGKINPSLLSLKHLN 119

Query: 116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGG 175
           YL+LS NDF   QIP F GSM +L  L+L  + F G+IP+ +GNLS+L+YLNL   Y   
Sbjct: 120 YLDLSNNDFSSTQIPSFFGSMTSLTHLNLGTSEFDGIIPHNLGNLSSLRYLNLSSLYGPR 179

Query: 176 LYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA 235
           L VE+L W+  LSLL++LDLS V+LSK S+   VTN L SL+ L +  CQL    PL   
Sbjct: 180 LKVENLQWIAGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELIMLDCQLDQIAPLPTP 239

Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLS 295
           NF+SLV LDLS N F NSL+   ++ L NLV L +SD  FQGPIP   +N TSLR +DLS
Sbjct: 240 NFTSLVVLDLSINFF-NSLMPRWVFSLKNLVSLHISDCGFQGPIPSISENITSLREIDLS 298

Query: 296 SNH------------------------------------------------FSYLIPEWL 307
            N+                                                F+  IPEWL
Sbjct: 299 FNYISLDLIPKWLFNQKFLKLSLEQNQLIGQLPSSIQNMTGLTTLNLEGNKFNSTIPEWL 358

Query: 308 NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISL 367
              + LE L LSSN  +G ISS +  N++S+ +L L  N LE KIP S    C L+ + L
Sbjct: 359 YNLNNLESLILSSNAFRGEISSSI-GNMTSLVNLHLDNNLLEGKIPNSLGHLCKLKVLDL 417

Query: 368 SGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
           S    + ++ S++    S C    ++SL L  T +SG +   +G    L  +D+S N   
Sbjct: 418 SENHFTVRRPSEMFESLSRCGPHGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISINQFD 477

Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF 487
           G     +G+L  L  LDIS N L G VSE  F+NL+ L  F A+ NS T K + +W+P F
Sbjct: 478 GTFTEVIGQLKMLTDLDISYNSLEGAVSEAFFSNLTKLKHFIANGNSFTWKTSRDWLPPF 537

Query: 488 QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQ 547
           QLE L L S +LGP +P WL +Q  L +L +S +GI   IP  FW   +Q  YL+LS NQ
Sbjct: 538 QLESLQLDSWHLGPEWPMWLQTQTQLTDLSLSGTGISSAIPTWFWNLTSQVKYLNLSYNQ 597

Query: 548 IHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGT 607
           ++GEI N+  V+Q   +DLS+N  +G LP++ +++  LDLS +  SGS+ HF C  T   
Sbjct: 598 LYGEIQNIF-VAQYSLVDLSSNRFTGSLPIVPASLWWLDLSNSSFSGSVFHFFCDRTYEL 656

Query: 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN 667
           + T +++L +NLL+G+IPDCWMNW+ L VL L+NN  TG +P SLG L  LRSLHLRNN+
Sbjct: 657 KTTYVLDLGNNLLSGKIPDCWMNWQELEVLNLENNHLTGNVPMSLGYLQRLRSLHLRNNH 716

Query: 668 LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCH 727
           L G LP SL NCT L  +D+G N F G++P WIG+    + IL LRSN+F G  P E+C+
Sbjct: 717 LDGELPHSLQNCTSLSILDLGGNGFVGSIPIWIGKSLSELQILNLRSNEFKGDIPYEVCY 776

Query: 728 LAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787
           L  L+IL LA N LSGT   C  N +AMA    S S  T Q    +S  G F      F+
Sbjct: 777 LKSLQILDLARNKLSGTTSRCFHNLSAMAILSESFSPTTFQM---WSSAGSF-----SFL 828

Query: 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847
           E  ++  +G+ + +  +L  + ++DLS N  SGEIP  +T +  L+SLNLS+N F+GRIP
Sbjct: 829 ENAILVTKGREMEYSKILGFVKSMDLSCNFLSGEIPEGLTSVLALQSLNLSNNRFTGRIP 888

Query: 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSS 907
             IG M  LESLDFS N L G IP +   L FLS+ N+SYNNL+G +P+  Q  +F+ SS
Sbjct: 889 SKIGNMVRLESLDFSMNELHGGIPPSMTTLTFLSYLNLSYNNLTGRIPESTQLQSFNQSS 948

Query: 908 YIGDEYLCGPVLKKLCTV--------VDENGGGKDGYGVGDVLGWLYVSFSMGF 953
           ++G+E LCG  L   C+         V+++GGG  GY + +   W YVS  +GF
Sbjct: 949 FVGNE-LCGRPLNNNCSANGVKPPPKVEQDGGG--GYYLLED-KWFYVSLGLGF 998

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1020 (43%), Positives = 607/1020 (59%), Gaps = 86/1020 (8%)

Query: 2    SVVVAFLFLKLFAIATLNISVCNGSSYVG----CVESEREALLSFKQDLEDPSNRLATWI 57
            S+ V  L ++  AIAT+  S+   +   G    C ESER+ALL FKQDL DP+N+LA+W+
Sbjct: 4    SMRVVLLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLASWV 63

Query: 58   GD--GDCCKWAGVICDNFTGHVLELHLG----NPWEDDHGHQAKESSALVGKINPALLDF 111
             +   DCC W  V+CD+ TGH+ ELHL     +P+ D         S   GKINP+LL  
Sbjct: 64   AEEGSDCCSWTRVVCDHMTGHIQELHLDGSYFHPYSDPF--DLDSDSCFSGKINPSLLSL 121

Query: 112  EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN 171
            +HL YL+LS N+F+G QIP F GSM +L  L+L+ + F G+IP+++GNLS+L+YLNL  +
Sbjct: 122  KHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAYSEFYGIIPHKLGNLSSLRYLNLSSS 181

Query: 172  YLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP 231
                L VE+L W+  LSLL++LDLS V+LSK S+   VTN L SL+ L ++ CQL    P
Sbjct: 182  NGFNLKVENLQWISGLSLLKHLDLSFVNLSKASDWLQVTNMLPSLVELDMSNCQLHQITP 241

Query: 232  LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRH 291
            L   NF+SLV LDLS N+F NSL+   ++ + NLV L L    FQGPIP   QN TSLR 
Sbjct: 242  LPTTNFTSLVVLDLSGNRF-NSLMPMWVFSIKNLVSLRLIYCWFQGPIPSISQNITSLRE 300

Query: 292  LDLSSNHFSY-LIPEWLNKFSRLEYLSLSSNRLQGRISSVL------------------- 331
            +DLS N  S   IP+WL     L  LSL SN+L G++ S +                   
Sbjct: 301  IDLSLNSISLDPIPKWLFNQKDLA-LSLESNQLTGQLPSSIQNMTGLKVLNLGSNDFNST 359

Query: 332  ----------------------------LENLSSIQSLDLSFNELEWKIPRSFSRFCNLR 363
                                        + N++S+ +L L  N LE KIP S    C L+
Sbjct: 360  IPEWLYSLNNLESLLLSSNALRGEISSSIGNMTSLVNLHLDNNLLEGKIPNSLGHLCKLK 419

Query: 364  SISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSE 423
             + LS    + Q+ S +    S C  + ++SL L  T +SG +   +G    L  +D+S 
Sbjct: 420  DLDLSKNHFTVQRPSVIFESLSRCGPNGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISG 479

Query: 424  NSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNW 483
            N  +G     +G+L  L  LDISNN L   VSE+ F+NL+ L  F A+ NS TLK + +W
Sbjct: 480  NQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTKLKHFIANGNSFTLKTSRDW 539

Query: 484  VPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSL 543
            VP FQLE L L S +LGP +P WL +Q  L  L +S +GI  T+P  FW   ++  YL+L
Sbjct: 540  VPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGISSTVPTWFWNLTSKVRYLNL 599

Query: 544  SNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHE 603
            S+NQ++G+I N+     +  +DLS+N+ +G LP++ +++  LDLS +  SGS+ HF C  
Sbjct: 600  SHNQLYGQIQNIV-AGPMSVVDLSSNHFTGALPIVPTSLFWLDLSNSSFSGSVFHFFCDR 658

Query: 604  TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHL 663
             +  R    ++L +NLL+G++PDCWM+W+YL  L L+NN  TG +P S+G L  L SLHL
Sbjct: 659  PDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHL 718

Query: 664  RNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL 723
            RNN+L G LP SL NCT L  +D+GEN FSG++P WIG+    + IL LRSNKF G  P 
Sbjct: 719  RNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPN 778

Query: 724  ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSD--SIYTIQYPSDFSFPGKFFN 781
            E+C+L  L+IL LA N LSG IP C  N +AMA F  S   S+Y I   +  S P    +
Sbjct: 779  EVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSESRDASVYVIL--NGISVP---LS 833

Query: 782  ITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF 841
            +T + +   L+T +G+ + +  +L+ +  +DLS N   GEIP E+T L  L+SLNLS+N 
Sbjct: 834  VTAKAI---LVT-KGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLSNNH 889

Query: 842  FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFA 901
            F+GRIP  IG MA LESLDFS N+L+GEIP++  NL FLSH N+S NNL+G +P   Q  
Sbjct: 890  FTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKSTQLQ 949

Query: 902  TFDSSSYIGDEYLCGPVLKKLCT--------VVDENGGGKDGYGVGDVLGWLYVSFSMGF 953
            + D SS++G+E LCG  L K C+         V+ +GGG  GY + +   W YVS  +GF
Sbjct: 950  SLDQSSFVGNE-LCGAPLNKNCSENGVIPPPTVEHDGGG--GYNLLED-EWFYVSLGVGF 1005

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284769|gb|AEQ27756.1| receptor-like protein [Malus x domestica]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1017 (44%), Positives = 608/1017 (59%), Gaps = 84/1017 (8%)

Query: 1    MSVVVAFLFLKLFAIATLNISVCNGSSYVG--CVESEREALLSFKQDLEDPSNRLATWIG 58
            M VV+  +    FA  T +I++CNG+      C ESER+ALL FKQDL+DP+NRLA+W+ 
Sbjct: 5    MRVVLLLIRFLAFATITFSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVA 64

Query: 59   --DGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIY 116
              D DCC W GV+CD+ TGH+ ELHL N    D     K  S+  G+INP+LL  +HL Y
Sbjct: 65   EEDSDCCSWTGVVCDHITGHIHELHLNN---TDRYFGFK--SSFGGRINPSLLSLKHLNY 119

Query: 117  LNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN---YL 173
            L+LSYN+F   QIP F GSM +L  L+L  + F G+IP+++GNLS+L+YLNL  +   Y 
Sbjct: 120  LDLSYNNFSTTQIPSFFGSMTSLTHLNLGQSKFYGIIPHKLGNLSSLRYLNLNSSFNFYR 179

Query: 174  GGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLS 233
              L VE+L W+  LSLL++LDLS V+LSK S+   VTN L SL+ L ++ C+L   PPL 
Sbjct: 180  STLQVENLQWISGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELYMSECELYQIPPLP 239

Query: 234  VANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD 293
              NF+SLV LDLS N F NSL+   ++ L NLV L L D +F+GPIP   QN TSLR +D
Sbjct: 240  TPNFTSLVVLDLSDNLF-NSLMPRWVFSLKNLVSLRLIDCDFRGPIPSISQNITSLREID 298

Query: 294  LS------------------------------------------------SNHFSYLIPE 305
            LS                                                 N F+  IPE
Sbjct: 299  LSLNSISLDPIPKWLFTQKFLELSLESNQLTGQLPRSIQNMTGLKVLDLGGNDFNSTIPE 358

Query: 306  WLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSI 365
            WL   + LE L L  N L+G ISS +  N++S+ +L L  N LE KIP S    C L+ +
Sbjct: 359  WLYSLTNLESLLLFDNALRGEISSSI-GNMTSLVNLHLDNNLLEGKIPNSLGHLCKLKVV 417

Query: 366  SLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
             LS    + Q+ S++    S C  D ++SL L  T ++G +   +G    L  +D+S N 
Sbjct: 418  DLSENHFTVQRPSEIFESLSRCGPDGIKSLSLRYTNIAGPIPISLGNLSSLEKLDISVNQ 477

Query: 426  ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485
             +G     +G+L  L  LDIS N   G VSE+ F+NL+ L +F A+ NSLTLK + +WVP
Sbjct: 478  FNGTFTEVVGQLKMLTDLDISYNLFEGVVSEVSFSNLTKLKYFNANGNSLTLKTSRDWVP 537

Query: 486  VFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSN 545
             FQLE L L S +LGP +P WL +Q  L  L +S +GI  TIP  FW   +Q  YL+LS+
Sbjct: 538  PFQLESLQLDSWHLGPEWPMWLQTQPQLKYLSLSGTGISSTIPTWFWNLTSQLGYLNLSH 597

Query: 546  NQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMV-LDLSKNKLSGSILHFVCHET 604
            NQ++GEI N+    +   +DL +N  +G LP++A++++  LDLS +  SGS+ HF C   
Sbjct: 598  NQLYGEIQNIV-AGRNSLVDLGSNQFTGVLPIVATSLLFWLDLSNSSFSGSVFHFFCDRP 656

Query: 605  NGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLR 664
            +  +    + L +N L G++PDCWM+W++LL L L+NN  +G +P S+G L  LRSLHLR
Sbjct: 657  DEPKRLIFLFLGNNSLTGKVPDCWMSWQHLLFLNLENNNLSGNVPMSMGYLQDLRSLHLR 716

Query: 665  NNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE 724
            NN+L G LP SL NCT L  +D+G N F G++P W+G     + IL LRSN+F G  P E
Sbjct: 717  NNHLYGELPHSLQNCTRLSVVDLGGNGFVGSIPIWMGTSLSELKILNLRSNEFEGDIPSE 776

Query: 725  LCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITE 784
            +C+L  L++L LA N LSG +P C  N +AMA   G  S +  QY +  S  G  F I +
Sbjct: 777  ICYLKSLRMLDLARNKLSGRLPRCFHNLSAMADLSG--SFWFPQYVTGVSDEG--FTIPD 832

Query: 785  QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844
              V   L+T +GK L +   L+ + ++DLS N   GEIP E+T L  L+SLNLS+N F+G
Sbjct: 833  YAV---LVT-KGKELEYTKNLKFVKSMDLSCNFMYGEIPEELTGLLTLQSLNLSNNRFTG 888

Query: 845  RIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFD 904
            RIP  IG MA LESLDFS N+L+GEIP +  NL FLSH N+SYNNL G +P+  Q  + D
Sbjct: 889  RIPSKIGNMAQLESLDFSMNQLDGEIPPSMKNLAFLSHLNLSYNNLRGRIPESTQLQSLD 948

Query: 905  SSSYIGDEYLCGPVLKKLCTV--------VDENGGGKDGYGVGDVLGWLYVSFSMGF 953
             SS++G+E LCG  L K C+         V+++GGG  GY + +   W YVS  +GF
Sbjct: 949  QSSFVGNE-LCGAPLNKNCSANGVVPPPTVEQDGGG--GYRLLED-KWFYVSLGVGF 1001

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284767|gb|AEQ27755.1| receptor-like protein [Malus sieversii]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/970 (44%), Positives = 593/970 (61%), Gaps = 66/970 (6%)

Query: 2   SVVVAFLFLKLFAIATLNISVCNGSSYVG----CVESEREALLSFKQDLEDPSNRLATWI 57
           ++ V  L ++  AIAT+  S+   +   G    C ESER+ALL FKQDL+DP+NRLA+W+
Sbjct: 4   TMRVVLLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWV 63

Query: 58  GD--GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVG-KINPALLDFEHL 114
            +   DCC W GV+CD+ TGHV +LHL + +     H   +S++  G KINP+LL  +HL
Sbjct: 64  AEEHSDCCSWTGVVCDHITGHVHKLHLNSSY-----HSFWDSNSFFGGKINPSLLSLKHL 118

Query: 115 IYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLG 174
            +L+LS N+F   QIP F GSM +L  L+L+   F G+IP+++GNLS+L+YLNL   Y  
Sbjct: 119 NHLDLSNNNFSTTQIPSFFGSMTSLTHLNLANLEFYGIIPHKLGNLSSLRYLNLSNIYSP 178

Query: 175 GLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV 234
            L VE+L W+  LSLL++LDLS V+L+K  +   VTN L SL+ L ++ CQL   P L  
Sbjct: 179 NLKVENLQWISGLSLLKHLDLSSVNLNKAFDWLQVTNMLPSLVELIMSDCQLVQIPHLPT 238

Query: 235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDL 294
            NF+SLV LDLS N F NSL+   ++ L NLV L L+D  FQGPIP   QN T L+ L L
Sbjct: 239 PNFTSLVVLDLSVNNF-NSLMLKWVFSLKNLVSLHLNDCGFQGPIPSISQNMTCLKVLSL 297

Query: 295 SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR 354
             N F+  IPEWL   + LE L LS N L G ISS +  N++S+ +LDL++N+LE KIP 
Sbjct: 298 LENDFNSTIPEWLYSLNNLESLLLSYNGLHGEISSSI-GNMTSLVNLDLNYNQLEGKIPN 356

Query: 355 SFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFK 414
           S    C L+ + LS    + Q+ S++    S C  D ++SL L NT              
Sbjct: 357 SLGHLCKLKVLDLSKNHFTVQRPSEIFESLSRCGPDGIKSLSLRNT-------------- 402

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474
                     +ISG +P SLG +S+L  LDIS N L G VSE+ F+ L+ L  F A  NS
Sbjct: 403 ----------NISGPIPMSLGNVSNLEKLDISYNSLEGAVSEVSFSKLTKLKHFIAKGNS 452

Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
           LTLK + +WVP FQLE L L S +LGP +P WL +Q  L  L +  +GI  TIP  FW  
Sbjct: 453 LTLKTSQDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLFGTGISSTIPTWFWNL 512

Query: 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSG 594
            ++  YL+LS+NQ++GEI N+  V+    +DL +N   G LP++ ++++ LDLS +  SG
Sbjct: 513 TSKVQYLNLSHNQLYGEIQNIV-VAPYSFVDLGSNQFIGALPIVPTSLLWLDLSNSSFSG 571

Query: 595 SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA 654
           S+ HF C   +  RL   + L +NLL G++PDCW NW +   L L+NN  TG +P S+G 
Sbjct: 572 SVFHFFCDRPDEPRLLHFLLLGNNLLTGKVPDCWANWSFFEFLNLENNHLTGNVPMSMGY 631

Query: 655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714
           L +L SLHL NN+L G LP SL NCT LE +D+  N F G++  W+G+  P + +L LRS
Sbjct: 632 LPMLESLHLHNNHLYGELPHSLQNCTSLEVVDLSGNGFVGSIQIWMGKSLPWLSLLNLRS 691

Query: 715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFS 774
           N+F G  P E+C+L  L+IL LA N LSGTIP C  N +AMA              S+F 
Sbjct: 692 NEFEGDIPSEICYLKSLQILDLAHNKLSGTIPRCFHNLSAMADV------------SEFF 739

Query: 775 FPGKFFNITEQ---FVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
            P   F I++     +E  ++  +GK + +  +L+ + N+DLS N   GEIP E+T L  
Sbjct: 740 LPTSRFIISDMAHTVLENAILVTKGKEMEYSKILKFVKNLDLSCNFMYGEIPEELTGLLA 799

Query: 832 LRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
           L+SLNLS+N F+G+ P  IG MA LESLDFS N+L+GEIP +  NL FL+H N+SYNNL+
Sbjct: 800 LQSLNLSNNRFTGKFPSKIGNMAQLESLDFSMNQLDGEIPPSITNLTFLNHLNLSYNNLT 859

Query: 892 GEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCT--------VVDENGGGKDGYGVGDVLG 943
           G +P+  Q  + D SS++G+E LCG  L K C+         V+ +GGG  GY + +   
Sbjct: 860 GRIPEGTQLQSLDQSSFVGNE-LCGAPLNKNCSENGVIPPPTVEHDGGG--GYSLLED-E 915

Query: 944 WLYVSFSMGF 953
           W YVS  +GF
Sbjct: 916 WFYVSLGVGF 925

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	960
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.862	0.914	0.333	1e-109
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.829	0.809	0.309	4.7e-80
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.870	0.820	0.296	8.7e-79
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.827	0.794	0.311	3.9e-76
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.679	0.803	0.324	5.1e-74
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.710	0.765	0.303	1.4e-71
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.829	0.800	0.289	1.4e-71
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.771	0.831	0.300	9.9e-71
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.689	0.762	0.314	1.3e-70
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.783	0.600	0.311	1.9e-70

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 304/911 (33%), Positives = 460/911 (50%)

Query:     2 SVVVAFLFLKLFAIATLNISVCNGSSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGD 61
             S  ++FL L L  +  LN      ++   C+ +ER+ALL+F+  L D S+RL +W G  D
Sbjct:     8 SFFISFLILILL-LKNLNYG---SAASPKCISTERQALLTFRAALTDLSSRLFSWSGP-D 62

Query:    62 CCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSY 121
             CC W GV+CD  T HV+++ L NP +D    + K  S L GKI+P+L   + L YL+LS 
Sbjct:    63 CCNWPGVLCDARTSHVVKIDLRNPSQDVRSDEYKRGS-LRGKIHPSLTQLKFLSYLDLSS 121

Query:   122 NDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLG-----GL 176
             NDF  ++IP F+G + +LR+L+LS + F G IP  +GNLS L+ L+L     G      L
Sbjct:   122 NDFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSL 181

Query:   177 YVEDLGWXXXXXXXXXXXXXG-VDLSKVSNGPLVT-NALRSLLVLQLAGCQLSHFPPL-- 232
                +L W             G V+LS      L   + + +L  L L   +L + PP   
Sbjct:   182 RASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLS 241

Query:   233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292
             S A+   L  LDLS N   NS I   L+GL NL  L L  +  QG IP   +N   L  L
Sbjct:   242 SSADLKLLEVLDLSENSL-NSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETL 300

Query:   293 DLSSN-HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL---LENL-SSIQSLDLSFNE 347
             DLS+N      IP  L    +L++L LS+N L G+I   L     N  +S+  LDLS N+
Sbjct:   301 DLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNK 360

Query:   348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
             L   +P S     NL+++ LS    S+     V +      S  L+ LDLSN  ++G++ 
Sbjct:   361 LAGTLPESLGSLRNLQTLDLS----SNSFTGSVPSSIGNMAS--LKKLDLSNNAMNGTIA 414

Query:   408 NQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTF 467
               +G+   L  ++L  N+      W  G L    ++++ +              L S+  
Sbjct:   415 ESLGQLAELVDLNLMANT------WG-GVLQKSHFVNLRS--------------LKSIRL 453

Query:   468 FYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTI 527
                   SL  K    W+P F+LE + + +C +G  FP WL  Q  L  + + ++GI DTI
Sbjct:   454 TTEPYRSLVFKLPSTWIPPFRLELIQIENCRIGL-FPMWLQVQTKLNFVTLRNTGIEDTI 512

Query:   528 PNRFWKSIT-QFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLD 586
             P+ ++  I+ +  YL L+NN+I G +P      +L T+DLS+NN  G  PL ++N   L 
Sbjct:   513 PDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATELR 572

Query:   587 LSKNKLSGSI-------------LHFVCHETNG---TRLT-----QIINLEDNLLAGEIP 625
             L +N  SGS+             ++   +   G   + L      QI++L  N  +G  P
Sbjct:   573 LYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFP 632

Query:   626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETI 685
              CW     L  + +  N  +G++P SLG                G +P SL NC+ L  I
Sbjct:   633 KCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNI 692

Query:   686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI 745
             D+G N+ +G +P+W+G +   + +L L+SN F G  P +LC++  L+IL L+GN +SG I
Sbjct:   693 DLGGNKLTGKLPSWVG-KLSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPI 751

Query:   746 PTCISNFTAMATFLGSDS----IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTF 801
             P CISN TA+A    ++     ++ +    ++       N++   +  E I  E   L +
Sbjct:   752 PKCISNLTAIARGTNNEVFQNLVFIVTRAREYEAIANSINLSGNNISGE-IPREILGLLY 810

Query:   802 KAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDF 861
                LR+L   +LS N  +G IP +I+ L  L +L+LS N FSG IP++  A++ L+ L+ 
Sbjct:   811 ---LRIL---NLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAAISSLQRLNL 864

Query:   862 SSNRLEGEIPK 872
             S N+LEG IPK
Sbjct:   865 SFNKLEGSIPK 875

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 264/853 (30%), Positives = 402/853 (47%)

Query:    98 SALVGKINP-----ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGM 152
             S L G++N       L     L  L+LS NDF G QIP  L ++ NL  LDLS   F G 
Sbjct:    93 SCLRGQLNSNSSLFRLPQLRFLTTLDLSNNDFIG-QIPSSLETLSNLTTLDLSRNHFSGR 151

Query:   153 IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNA 212
             IP+ IGNLS+L +++   N   G     LG+               + S     P     
Sbjct:   152 IPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYN---NFS--GRVPSSIGN 206

Query:   213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
             L  L  L+L+        P S+ +   L  L L  N F    I + L  L +L  +DL  
Sbjct:   207 LSYLTTLRLSRNSFFGELPSSLGSLFHLTDLILDTNHFVGK-IPSSLGNLSHLTSIDLHK 265

Query:   273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
             NNF G IP ++ N + L    LS N+    IP      ++L+ L++ SN+L G     LL
Sbjct:   266 NNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALL 325

Query:   333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
              NL  + +L L  N L   +P + S   NL+    +    +    S +  I S      L
Sbjct:   326 -NLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPS------L 378

Query:   393 ESLDLSNTTLSGSLT-NQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
             +++ L N  L+GSL    I  +  L  + L  N+  G +  S+ KL +L+ LD+SN    
Sbjct:   379 KTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQ 438

Query:   452 GTVSEIHFANLSSLTFFYASR-NSLTLKANPNWVPVFQL-EELDLRSCYLGPPFPSWLHS 509
             G V    F++L S+ +   S  N+ T       +  F+L + LDL   ++     S L S
Sbjct:   439 GLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSL-S 497

Query:   510 QNHLV---NLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLD 565
              + LV    L +S  GI +  P +F +S      L +SNN+I G++P  L  +  L  ++
Sbjct:   498 NSSLVLISQLYLSGCGITE-FP-KFLRSQELMLTLDISNNKIKGQVPGWLWMLPVLNYVN 555

Query:   566 LSANNLSG-----QLPLLASN----VMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE 616
             LS N   G     +L L +      +  L  S N  +G+I  F+C           ++  
Sbjct:   556 LSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFTGNIPSFICE----LPYLSTLDFS 611

Query:   617 DNLLAGEIPDCWMNWR--YLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPV 674
             +N   G IP C  N +  YL  L L +N+ +G LP ++                 G LP 
Sbjct:   612 NNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENI--FESLISLDVGHNQLVGKLPR 669

Query:   675 SLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKIL 734
             SL + + L  +++  N+ S   P W+      + +L+LRSN F+G  P+E    + L+I+
Sbjct:   670 SLSHISSLGLLNVESNKISDTFPLWLSS-LQELQVLVLRSNAFYG--PIEKTQFSKLRII 726

Query:   735 VLAGNNLSGTIPT-CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT 793
              ++GN  +GT+P     N+TAM  F    S+   +  S+       +  T+ F  + ++ 
Sbjct:   727 DISGNQFNGTLPANFFVNWTAM--F----SLDENEDQSNGETMSNMYMSTDYFYFDSMVL 780

Query:   794 L-EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA 852
             + +G  +  + VL++ T ID S NKF GEIP  I +L+EL  LNLS+N  SG I  ++G 
Sbjct:   781 MNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGN 840

Query:   853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDE 912
             +  LESLD S N+L GEIP+    L +L++ N S+N L G +P   QF T   SS+  + 
Sbjct:   841 LMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNH 900

Query:   913 YLCGPVLKKLCTV 925
              L GP L+K+C +
Sbjct:   901 GLYGPSLEKICDI 913

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 263/886 (29%), Positives = 417/886 (47%)

Query:    55 TWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHL 114
             +W+   DCC W G+ CD  +G+V+ L L + +   +G Q K +S+L  K+        HL
Sbjct:    96 SWVNKSDCCSWDGITCDAKSGNVIGLDLSSIFL--YG-QLKSNSSLF-KLR-------HL 144

Query:   115 IYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN-YL 173
               LNL+ N+F    IP     +  L  LDLS +   G IP  +  L+ L  L+L  + + 
Sbjct:   145 RDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQIPINLLQLTKLVSLDLSSSDFF 204

Query:   174 GGLYVEDLGWXXXXXXXXXXXXXGV---DLS--KVSNG-PLVTNALRSLLVLQLAGCQLS 227
             G      L                +   D+S  K+S+  P   + +RSL  L L GC L 
Sbjct:   205 GDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLF 264

Query:   228 HFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWT 287
                P S+    +L ++DL +N      +    +   +L+ L +   +F G IPD+I +  
Sbjct:   265 GEFPSSILLIPNLQSIDLGNNPNLRGNLPV-FHENNSLLKLTILYTSFSGAIPDSISSLK 323

Query:   288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
             +L  L LS ++FS  IP  L   S L +LSLSSN L G I S +  NL+ + +  +  N+
Sbjct:   324 NLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSI-GNLNQLTNFYVGGNK 382

Query:   348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
             L   +P + S    L +ISLS  Q +      +  +        L+     +    G++ 
Sbjct:   383 LSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSK------LKFFFADDNPFIGAIL 436

Query:   408 NQIGKFKVLNSVDLSENSISGQVPW-SLGKLSSLRYLDISN-NQLNGTVSEIH-FANLSS 464
             + + K   L  + LS N ++  V   ++  L +L    I + N       +++ F++L  
Sbjct:   437 SPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQ 496

Query:   465 LTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIV 524
             L   Y SR  ++     +  P   LE L LRSC +   FP ++    +L  LD+S++ I 
Sbjct:   497 LGTLYISRIPISTTNITSDFPS-NLEYLSLRSCNI-TDFPEFIRKGRNLQILDLSNNKIK 554

Query:   525 DTIPNRFWKSITQFNYLSLSNNQIHGEIPNL--TEVSQLGTLDLSANNLSGQLPLLASNV 582
               +P+  W+  T  N + LSNN + G   ++  +  SQL ++DLS+N   G L L + ++
Sbjct:   555 GQVPDWLWRMPT-LNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKSL 613

Query:   583 MVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLV-LRLDN 641
                  S N  +G I   +C    G    +I++L +N L G +P C       L  L L N
Sbjct:   614 RYFSGSNNNFTGKIPRSIC----GLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRN 669

Query:   642 NKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDIGENEFSGNVPAWIG 701
             N  +G LP                    G LP SL  C+ LE +++G N  +   P  + 
Sbjct:   670 NSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELN 729

Query:   702 ERFPRMIILILRSNKFHGVFP-LELCHLAF--LKILVLAGNNLSGTIPT-CISNFTAMAT 757
                 ++ +L+L SNKFHG    ++     F  L+I+ ++ N+  G +P+    N+TAM++
Sbjct:   730 S-LQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSS 788

Query:   758 FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK 817
                 D+    +Y  + S  G         V    +  +G ++  + VL + T IDLS N+
Sbjct:   789 --KKDNNIEPEYIQNPSVYGSSLGYYTSLV----LMSKGVSMEMERVLTIYTAIDLSGNQ 842

Query:   818 FSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL 877
               G+IP  I +L+ELR LN+S N F+G IP ++  +  LESLD S N + GEIP     L
Sbjct:   843 LHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTL 902

Query:   878 VFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLC 923
               L+  N+S+N L G +P   QF     SSY G+  L GP L+ +C
Sbjct:   903 SSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVC 948

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 266/853 (31%), Positives = 394/853 (46%)

Query:   107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVG-MIPNQIGNLSNLQY 165
             +L    +L  L+LS + F     P FL +  +L  L L+        +  +  +L+NL++
Sbjct:    67 SLSRLRNLEILDLSSHRFNNSIFP-FLNAATSLTTLFLTYNNMHSPFLVKEFKDLTNLEH 125

Query:   166 LNLRPN-YLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
             L+LR N + G +  +D                  +L      P + N+  SL  L L G 
Sbjct:   126 LDLRGNRFNGSIPTQDYN-SLRRFRKLEILDLSDNLFNSRIFPFL-NSATSLKSLSLWGN 183

Query:   225 QLSH-FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF------QG 277
              +   FP   + + +++  LDLS N+F+ S+    L+ L  L  LDLSDN F      QG
Sbjct:   184 NMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQG 243

Query:   278 ------PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL 331
                   P+  T   W ++  L LS+N  +   P  L   + L  L LSSN+L G + S L
Sbjct:   244 KFAKTKPLSGTCP-WKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSAL 302

Query:   332 LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVS-QVLAIFSGCVSD 390
               NL S++ L L  N  E     S     NL  + +  ++L  Q  S +V    S     
Sbjct:   303 A-NLESLEYLSLFGNNFEGFF--SLGLLANLSKLKV--LRLDSQSNSLEVEFETSWKPKF 357

Query:   391 VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP-WSLGKLSSLRYLDISNNQ 449
              L  + L +  L   + + +   K L+ VDLS+N I G  P W L   + L  L + NN 
Sbjct:   358 QLVVIALRSCNLE-KVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNS 416

Query:   450 LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV-PVFQLEELDLRSCYLGPPFPSWLH 508
                        NL  L       N L L+ N  W+ P      L     + G   PS L 
Sbjct:   417 FTSFQLPKSAHNLLFLNVSVNKFNHLFLQ-NFGWILPHLVCVNLAYNG-FQGN-LPSSLD 473

Query:   509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI-PNLTEVSQLGTLDLS 567
             +   +  LD+S +     +P RF K       L LS+N++ GE+ P     ++L  + + 
Sbjct:   474 NMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMD 533

Query:   568 ANNLSGQLPL-LAS--NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI 624
              N  +G +     S  ++ VLD+S NKL+G I  ++  E  G    Q+ N   N+L GEI
Sbjct:   534 NNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWI-GERQGLFALQLSN---NMLEGEI 589

Query:   625 PDCWMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELET 684
             P    N  YL +L L +N+ +G +P  + +               G +P +L     +  
Sbjct:   590 PTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTL--LLNVIV 647

Query:   685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGT 744
             +D+  N  SGN+P +I  +   + IL+LR N F G  P + C L+ +++L L+ N  +G+
Sbjct:   648 LDLRNNRLSGNLPEFINTQ--NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGS 705

Query:   745 IPTCISNFTAMATFLGSDSIYTIQYPSDFSF---PGKF--------FNI---TEQFVEEE 790
             IP+C+SN T+     G DS Y    PS F     P  F        FN+   T    + E
Sbjct:   706 IPSCLSN-TSFGLRKGDDS-YRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIE 763

Query:   791 LITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI 850
               T           L+LL  +DLS N+ SGEIP E+  L EL +LNLSHN  SG I E+ 
Sbjct:   764 FATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESF 823

Query:   851 GAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIG 910
               +  +ESLD S NRL+G IP    +++ L+ FN+SYNNLSG VP   QF TF++ SY G
Sbjct:   824 SGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFG 883

Query:   911 DEYLCGPVLKKLC 923
             +  LCG  +   C
Sbjct:   884 NPLLCGKSIDISC 896

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 223/687 (32%), Positives = 336/687 (48%)

Query:   252 NSLIATQLYGLCNLVFLDLSDNNFQGPIPD-TIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310
             +S I   +  + +LV LD+S NN QG IP     N TSL  LD+  N F+  IP  L   
Sbjct:    94 SSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSL 153

Query:   311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGI 370
             + L+ L LS N + G +S  + E L ++Q L L  N +   IP        L +++L   
Sbjct:   154 TNLQRLDLSRNVIGGTLSGDIKE-LKNLQELILDENLIGGAIPSEIGSLVELLTLTLRQN 212

Query:   371 QLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQV 430
               +    S V  +        L+++DL N  LS  + + IG    L+++ LS N +SG +
Sbjct:   213 MFNSSIPSSVSRLTK------LKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGI 266

Query:   431 PWSLGKLSSLRYLDISNNQ-LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV-PVFQ 488
             P S+  L +L  L + NN  L+G +       L  L       N+     N  +V P F+
Sbjct:   267 PSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFK 326

Query:   489 LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
             L  L LRSC L    P WL +Q  LV LD+S + +    P   W +  +   ++LS+N++
Sbjct:   327 LTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPK--WLADLKIRNITLSDNRL 384

Query:   549 HGEIP-NLTEVSQLGTLDLSANNLSGQLP--LLASNVMVLDLSKNKLSGSILHFVCHETN 605
              G +P NL +   L  L LS NN SGQ+P  +  S VMVL LS+N  SGS+   +     
Sbjct:   385 TGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPKSITK--- 441

Query:   606 GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXX 665
                  ++++L  N L+GE P  +    YL  L + +N+F+G +P   G            
Sbjct:   442 -IPFLKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVPAYFGGSTSMLLMSQNN 499

Query:   666 XXXXGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLEL 725
                 G  P +  N + L  +D+ +N+ SG V + I +    + +L LR+N   G  P  +
Sbjct:   500 FS--GEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGI 557

Query:   726 CHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQ 785
              +L  LK+L L+ NNL G +P+ + N T M       S  TI+ P  FS      NI E+
Sbjct:   558 SNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKS-PEPSAMTIR-PY-FSSYTDIPNI-ER 613

Query:   786 FVE---EELITL-----EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNL 837
              +E   E++ +L       K + F     L T +DLS NK  GEIP  +  L+ L+ LNL
Sbjct:   614 LIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNL 673

Query:   838 SHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
             S+N FSG IP++ G +  +ESLD S N L GEIPK    L  L+  ++  N L G +P+ 
Sbjct:   674 SNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPES 733

Query:   898 AQFATFDSSS-YIGDEYLCGPVLKKLC 923
              Q    ++ + Y  +  +CG  ++  C
Sbjct:   734 PQLDRLNNPNIYANNSGICGMQIQVPC 760

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 220/726 (30%), Positives = 352/726 (48%)

Query:   216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
             L VL L GC L    P S+ + S L  LDLS+N      I   +  L +L  L L+   F
Sbjct:   131 LRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLTSCKF 190

Query:   276 QGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
              G IP ++ N T L  LDLS N+F+  +P+ +     L  L+L      G+I + L  +L
Sbjct:   191 TGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSL-GSL 249

Query:   336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSI--------SLSGIQLSHQKVSQVLAIFSGC 387
             S++  LD+S NE   + P S S    L           SL+ + LS  +   +L      
Sbjct:   250 SNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLPSNMSS 309

Query:   388 VSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSS---LRYLD 444
             +S  LE+ D+S  + SG++ + +     L  +DL  N  SG  P  +G +SS   L+ L 
Sbjct:   310 LSK-LEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSG--PLKIGNISSPSNLQELY 366

Query:   445 ISNNQLNGTVSEIHFANLSSLTFFYASR-NSLTLKANPNWVPVFQLEELDLRSCYLGPPF 503
             I  N +NG +       L  L+    S  ++  +     ++ +  L  LDL    L    
Sbjct:   367 IGENNINGPIPR-SILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLN--I 423

Query:   504 PSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLG 562
              S  H  +H+++L +S   I    P +F ++ T   +L +S NQI G++P  L  +  L 
Sbjct:   424 SSSHHLPSHMMHLILSSCNI-SQFP-KFLENQTSLYHLDISANQIEGQVPEWLWRLPTLR 481

Query:   563 TLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG 622
              ++++ N  SG+L +L + +     S NK SG I   VC    GT +     L +N  +G
Sbjct:   482 YVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPRAVCEI--GTLV-----LSNNNFSG 534

Query:   623 EIPDCW-MNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTE 681
              IP C+ ++ + L +L L NN  +G +P                    G  P SL NC+ 
Sbjct:   535 SIPPCFEISNKTLSILHLRNNSLSGVIPEE-SLHGYLRSLDVGSNRLSGQFPKSLINCSY 593

Query:   682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG-VF-PLELCHLAFLKILVLAGN 739
             L+ +++ EN  +   P+W+ +  P + +L+LRSN+FHG +F P +    + L+   ++ N
Sbjct:   594 LQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISEN 652

Query:   740 NLSGTIPT-CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKT 798
               SG +P+     ++ M++F+       I     F+  G   +  E F +  ++T++G  
Sbjct:   653 RFSGVLPSDYFVGWSVMSSFVD-----IIDNTPGFTVVG---DDQESFHKSVVLTIKGLN 704

Query:   799 LTFKAV-LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLE 857
             +        +   ID+S N+  G+IP  I +L+EL  LN+S+N F+G IP ++  ++ L+
Sbjct:   705 MELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQ 764

Query:   858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGP 917
             SLD S NRL G IP     L FL+  N SYN L G +P   Q  + +SSS+  +  LCG 
Sbjct:   765 SLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGA 824

Query:   918 VLKKLC 923
              L+K C
Sbjct:   825 PLQKKC 830

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 245/845 (28%), Positives = 386/845 (45%)

Query:    98 SALVGKINP--ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPN 155
             S L G++ P  +L   +HL  +NL+YN+F    IP        L  L+LS + F G I  
Sbjct:   107 SCLHGRLEPNSSLFRLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISI 166

Query:   156 QIGNLSNLQYLNLRPNYL---GGLYVEDLGWXXXXXXXXXXXXXGVDLSKV---SNGPLV 209
             ++  L+NL  L+L  ++      L +E   +              +D+S V   S  P+ 
Sbjct:   167 KLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRE-LDMSSVDISSAIPIE 225

Query:   210 TNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHN-QFDNSLIATQLYGLCNLVFL 268
              + + SL  L L GC L    P SV    +L ++ L HN   + SL         +L+ L
Sbjct:   226 FSYMWSLRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNLNLEGSL--PNFLRNNSLLKL 283

Query:   269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRIS 328
              + + +F G IP++I N   L  L L  + FS  IP  L   S L  L LS N   G I 
Sbjct:   284 SIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIP 343

Query:   329 SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCV 388
             S +  NL  +   D+S N L    P S      LR I +     +H   +  L      +
Sbjct:   344 SSV-SNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICS---NH--FTGFLPPTISQL 397

Query:   389 SDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW-SLGKLSSLRYLDISN 447
             S+ LE     + + +GS+ + +     L ++ LS N ++      ++  L +L+ L + N
Sbjct:   398 SN-LEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDN 456

Query:   448 NQLNGTVSEIH-FANLSSLTFFYASRNSL-TLKANPNWVPVFQLEELDLRSCYLGPPFPS 505
             N    +  ++  F +L  L     S   L T     +      LE L+L  C +   FP 
Sbjct:   457 NNFKASQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNI-IEFPE 515

Query:   506 WLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVS--QLGT 563
             ++ +Q +L ++D+S++ I   +PN  W+ + + + + LSNN + G   +L  +S  ++  
Sbjct:   516 FIRNQRNLSSIDLSNNNIKGQVPNWLWR-LPELSTVDLSNNSLIGFNGSLKALSGSKIVM 574

Query:   564 LDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE 623
             LDLS+N   G L +    +     S N  +G I   +C   N      I++L +N L G 
Sbjct:   575 LDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPL----ILDLSNNNLHGL 630

Query:   624 IPDCW-MNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTEL 682
             IP C       L VL L NN   G LP                    G LP SL  C+ L
Sbjct:   631 IPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSAL 690

Query:   683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP-LELCHLAF--LKILVLAGN 739
             E +++  N  +   P W+    P++ +L+LRSN F G    ++     F  L+I  ++ N
Sbjct:   691 EILNVESNNINDTFPFWLNS-LPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHN 749

Query:   740 NLSGTIPT-CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKT 798
             +  GT+P+    N+TA+     S S   +QY  D    G + ++        ++  +G +
Sbjct:   750 DFVGTLPSDYFMNWTAI-----SKSETELQYIGDPEDYGYYTSL--------VLMNKGVS 796

Query:   799 LTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLES 858
             +  + +L   T ID + NK  G+IP  + +L+EL  LNLS N F+G IP ++  +  LES
Sbjct:   797 MEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLES 856

Query:   859 LDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPV 918
             LD S N++ GEIP     L  L   N+S+N L G +P   QF   + SSY G+  + G  
Sbjct:   857 LDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSS 916

Query:   919 LKKLC 923
             LK +C
Sbjct:   917 LKDVC 921

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 237/788 (30%), Positives = 360/788 (45%)

Query:   163 LQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXX-GVDLSKVSNGPLVTNALRSLLVLQL 221
             LQ LNL   Y  G + E  G               GV+    S  P +  A+ SL  L L
Sbjct:    52 LQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKTLIL 110

Query:   222 AGCQLSH-FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
                     FP   + N +SL  LDL  N+F   L   +L  L NL  LDLS+N F G + 
Sbjct:   111 HDNLFKGGFPVQELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQ 170

Query:   281 DT-IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQ 339
                I     L+ L LS N F   IP   ++FS+L  L LSSN L G+I    + +  S++
Sbjct:   171 KQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIP-YFISDFKSME 229

Query:   340 SLDLSFNELEWKIPRSF-SRFCNLRSISLSGIQLSHQKVSQVLAI-FSGCVSDVLESLDL 397
              L L  N+ E        +    L+   LS    S   + Q++    SG +   L S+ L
Sbjct:   230 YLSLLDNDFEGLFSLGLITELTELKVFKLS----SRSGMLQIVETNVSGGLQSQLSSIML 285

Query:   398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP-WSLGKLSSLRYLDISNNQLNGTVSE 456
             S+  L G +   +   + L  +DLS N +SG  P W L   + L+ L + NN        
Sbjct:   286 SHCNL-GKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFKTLTLP 344

Query:   457 IHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSC-YLGPPFPSWLHSQNHLVN 515
                  L  L     + N+  L  +   + +  L  L+L +  +LG   PS +    ++  
Sbjct:   345 RTMRRLQILDLSVNNFNN-QLPKDVGLI-LASLRHLNLSNNEFLGN-MPSSMARMENIEF 401

Query:   516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI-PNLTEVSQLGTLDLSANNLSGQ 574
             +D+S +     +P   +      ++L LS+N+  G I    ++ + L TL +  N  +G+
Sbjct:   402 MDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGK 461

Query:   575 LPLLASNVM---VLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW 631
             +P    N+    V+DLS N L+G+I  ++     G    +++ + +N L G IP    N 
Sbjct:   462 IPRTLLNLRMLSVIDLSNNLLTGTIPRWL-----GNFFLEVLRISNNRLQGAIPPSLFNI 516

Query:   632 RYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDIGENE 691
              YL +L L  N  +G LP    +               G++P +L     L  +D+  N+
Sbjct:   517 PYLWLLDLSGNFLSGSLPLR-SSSDYGYILDLHNNNLTGSIPDTLWY--GLRLLDLRNNK 573

Query:   692 FSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISN 751
              SGN+P +     P + +++LR N   G  P+ELC L+ +++L  A N L+ +IP+C++N
Sbjct:   574 LSGNIPLF--RSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTN 631

Query:   752 FT-AMATFLGSDS-------------IYTIQYPSDFSFPGKF-FNITEQF-VEEELITLE 795
              +        +DS             IYT  Y        +F  + +  F V+ E    +
Sbjct:   632 LSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQ 691

Query:   796 GKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL 855
                L  +  L  +  +DLS+N+ SG IP E+  L+ +RSLNLS N  SG IP +   +  
Sbjct:   692 RYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRS 751

Query:   856 LESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLC 915
             +ESLD S N+L G IP     L  L  FN+SYNNLSG +P   QF TF   SY+G+  LC
Sbjct:   752 IESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLC 811

Query:   916 GPVLKKLC 923
             G   K+ C
Sbjct:   812 GSPTKRSC 819

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 223/709 (31%), Positives = 339/709 (47%)

Query:   233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292
             +V N   L TLDLS+N F    I + +    +L  LDLS N F G IP +I N + L  L
Sbjct:   114 TVLNLRFLTTLDLSYNYFSGQ-IPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLSQLTFL 172

Query:   293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI 352
             DLS N F   +P +    ++L  L + SN L G I  + L NL  +  L LS N+    +
Sbjct:   173 DLSGNEFVGEMP-FFGNMNQLTNLYVDSNDLTG-IFPLSLLNLKHLSDLSLSRNQFTGTL 230

Query:   353 PRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT-NQIG 411
             P + S   NL      G   +    S +  I S      L S++L N  L+G+L    I 
Sbjct:   231 PSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIAS------LTSINLRNNQLNGTLEFGNIS 284

Query:   412 KFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYAS 471
                 L  +D+S N+  G +P S+ K  +L+ LD+S+    G V    F NL SL     S
Sbjct:   285 SPSTLTVLDISNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLS 344

Query:   472 RNSLTLKANPNWVPVFQLEEL---DLRSCYLGPPFPSWL--HSQNHLVN-LDISDSGIVD 525
               + T   + N +    L  +   DL   ++       +  H    L++ L +S  GI +
Sbjct:   345 HLNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGITE 404

Query:   526 TIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSG-------QLPL 577
               P    +S  +   L +SNN+I G++P  L  + +L  +DLS N  +G        L L
Sbjct:   405 -FPELL-RSQHKMTNLDISNNKIKGQVPGWLWTLPKLIFVDLSNNIFTGFERSTEHGLSL 462

Query:   578 LAS-NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL- 635
             +   ++  L  S N  +G I  F+C      R    ++L DN L G IP C  N +  L 
Sbjct:   463 ITKPSMQYLVGSNNNFTGKIPSFIC----ALRSLITLDLSDNNLNGSIPPCMGNLKSTLS 518

Query:   636 VLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDIGENEFSGN 695
              L L  N+  G LP S+                 G LP S    + LE +++  N  +  
Sbjct:   519 FLNLRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDT 576

Query:   696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT-CISNFTA 754
              P W+     ++ +L+LRSN FHG  P+       L+I+ L+ N  SGT+P     N+ A
Sbjct:   577 FPFWLSS-LKKLQVLVLRSNAFHG--PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNA 633

Query:   755 MATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLS 814
             M++ + ++     +Y  D SF  ++++      +  ++  +G  +    +L++ T +D S
Sbjct:   634 MSSLMATEDRSQEKYMGD-SF--RYYH------DSVVLMNKGLEMELVRILKIYTALDFS 684

Query:   815 NNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT 874
              NK  GEIP  I +L+EL  LNLS N F+G IP ++G +  LESLD S N+L GEIP+  
Sbjct:   685 ENKLEGEIPRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQEL 744

Query:   875 VNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLC 923
              NL +L++ N S+N L G VP   QF   + SS+  +  L G  L+++C
Sbjct:   745 GNLSYLAYMNFSHNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVC 793

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 1.9e-70, P = 1.9e-70
 Identities = 251/807 (31%), Positives = 382/807 (47%)

Query:   142 LDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLS 201
             L+LSG G  G I   IG  +NL +++L  N L G     L                   S
Sbjct:    76 LNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHL------FS 129

Query:   202 KVSNG--PLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL 259
              + +G  P    +L +L  L+L   +L+   P +  N  +L  L L+  +    LI ++ 
Sbjct:   130 NLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRL-TGLIPSRF 188

Query:   260 YGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
               L  L  L L DN  +GPIP  I N TSL     + N  +  +P  LN+   L+ L+L 
Sbjct:   189 GRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLG 248

Query:   320 SNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS---HQ- 375
              N   G I S L  +L SIQ L+L  N+L+  IP+  +   NL+++ LS   L+   H+ 
Sbjct:   249 DNSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEE 307

Query:   376 --KVSQ----VLAI--FSG------CVSDV-LESLDLSNTTLSGSLTNQIGKFKVLNSVD 420
               +++Q    VLA    SG      C ++  L+ L LS T LSG +  +I   + L  +D
Sbjct:   308 FWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLD 367

Query:   421 LSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKAN 480
             LS N+++GQ+P SL +L  L  L ++NN L GT+S    +NL++L  F    N+L  K  
Sbjct:   368 LSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS-SISNLTNLQEFTLYHNNLEGKV- 425

Query:   481 PNWVPVF-QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFN 539
             P  +    +LE + L         P  + +   L  +D   + +   IP+   + +    
Sbjct:   426 PKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLT 484

Query:   540 YLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLS---KNKLSGS 595
              L L  N++ G IP +L    Q+  +DL+ N LSG +P     +  L+L     N L G+
Sbjct:   485 RLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGN 544

Query:   596 ILHFVCHETNGTRLTQIINLEDNLLAGEI-PDCWMNWRYLLVLRLDNNKFTGKLPTSLGA 654
             +   + +  N TR    IN   N   G I P C  +  YL    +  N F G +P  LG 
Sbjct:   545 LPDSLINLKNLTR----INFSSNKFNGSISPLCGSS-SYLS-FDVTENGFEGDIPLELGK 598

Query:   655 XXXXXXXXXXXXXXXGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714
                            G +P + G  +EL  +DI  N  SG +P  +G    ++  + L +
Sbjct:   599 STNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELG-LCKKLTHIDLNN 657

Query:   715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDSIYTIQYPSDF 773
             N   GV P  L  L  L  L L+ N   G++PT I + T + T FL  +S+     P + 
Sbjct:   658 NYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNG-SIPQEI 716

Query:   774 SFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELR 833
                G    +    +EE    L G   +    L  L  + LS N  +GEIP EI  L++L+
Sbjct:   717 ---GNLQALNALNLEEN--QLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQ 771

Query:   834 S-LNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892
             S L+LS+N F+GRIP  I  +  LESLD S N+L GE+P    ++  L + N+SYNNL G
Sbjct:   772 SALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEG 831

Query:   893 EVPDEAQFATFDSSSYIGDEYLCGPVL 919
             ++  + QF+ + + +++G+  LCG  L
Sbjct:   832 KL--KKQFSRWQADAFVGNAGLCGSPL 856

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	960
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-61
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  238 bits (608), Expect = 2e-65
 Identities = 195/617 (31%), Positives = 298/617 (48%), Gaps = 81/617 (13%)

Query: 308 NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFC-NLRSIS 366
           N  SR+  + LS   + G+ISS +   L  IQ+++LS N+L   IP        +LR ++
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI 426
           LS    +        +I  G + + LE+LDLSN  LSG + N IG F  L  +DL  N +
Sbjct: 125 LSNNNFTG-------SIPRGSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 427 SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPV 486
            G++P SL  L+SL +L +++NQL G +       + SL + Y   N+L+ +     +P 
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGE-----IP- 229

Query: 487 FQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNN 546
           +++  L                S NHL   D+  + +   IP+    ++    YL L  N
Sbjct: 230 YEIGGLT---------------SLNHL---DLVYNNLTGPIPSSL-GNLKNLQYLFLYQN 270

Query: 547 QIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLA---SNVMVLDLSKNKLSGSILHFVCH 602
           ++ G IP  +  + +L +LDLS N+LSG++P L     N+ +L L  N  +G I   +  
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT- 329

Query: 603 ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH 662
             +  RL Q++ L  N  +GEIP        L VL L  N  TG++P  L +   L  L 
Sbjct: 330 --SLPRL-QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP 722
           L +N+L G +P SLG C  L  + + +N FSG +P+    + P +  L + +N   G   
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRIN 445

Query: 723 LELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD-FS--FPGKF 779
                +  L++L LA N   G +P             GS  +  +    + FS   P K 
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPD----------SFGSKRLENLDLSRNQFSGAVPRKL 495

Query: 780 FNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSH 839
            +++E                       L  + LS NK SGEIP E++  ++L SL+LSH
Sbjct: 496 GSLSE-----------------------LMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 840 NFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQ 899
           N  SG+IP +   M +L  LD S N+L GEIPKN  N+  L   NIS+N+L G +P    
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592

Query: 900 FATFDSSSYIGDEYLCG 916
           F   ++S+  G+  LCG
Sbjct: 593 FLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  224 bits (573), Expect = 5e-61
 Identities = 201/670 (30%), Positives = 287/670 (42%), Gaps = 118/670 (17%)

Query: 35  EREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQA 94
           E E LLSFK  + DP   L+ W    D C W G+ C+N +  V+ + L            
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDL----------SG 78

Query: 95  KESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPR-FLGSMGNLRFLDLSGAGFVGMI 153
           K  S   GKI+ A+    ++  +NLS N   G  IP     +  +LR+L+LS   F G I
Sbjct: 79  KNIS---GKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSI 134

Query: 154 PNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNAL 213
           P   G++ NL+ L+L  N L G    D+G                             + 
Sbjct: 135 PR--GSIPNLETLDLSNNMLSGEIPNDIG-----------------------------SF 163

Query: 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
            SL VL L G  L    P S+ N +SL  L L+ NQ     I  +L  + +L ++ L  N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYN 222

Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE 333
           N  G IP  I   TSL HLDL  N+ +  IP  L     L+YL L  N+L G I   +  
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF- 281

Query: 334 NLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLE 393
           +L  + SLDLS N L  +IP    +  N                              LE
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQN------------------------------LE 311

Query: 394 SLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
            L L +   +G +   +     L  + L  N  SG++P +LGK ++L  LD+S N L G 
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 454 VSE--IHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
           + E      NL  L  F    NSL  +   +      L  + L+        PS   ++ 
Sbjct: 372 IPEGLCSSGNLFKLILF---SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKL 427

Query: 512 HLVN-LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
            LV  LDIS++ +   I +R W  +     LSL+ N+  G +P+     +L  LDLS N 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486

Query: 571 LSGQLPL---LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC 627
            SG +P      S +M L LS+NKLS                            GEIPD 
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLS----------------------------GEIPDE 518

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
             + + L+ L L +N+ +G++P S   + +L  L L  N LSG +P +LGN   L  ++I
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 688 GENEFSGNVP 697
             N   G++P
Sbjct: 579 SHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.1 bits (195), Expect = 4e-15
 Identities = 54/157 (34%), Positives = 75/157 (47%), Gaps = 22/157 (14%)

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI 870
           + L N    G IP +I+ LR L+S+NLS N   G IP ++G++  LE LD S N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 871 PKNTVNLVFLSHFNISYNNLSGEVPDE--------AQFATFDSSSYIGDEYL--CGPVLK 920
           P++   L  L   N++ N+LSG VP          A F   D++   G   L  CGP L 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL- 541

Query: 921 KLCTVVDENGGGKDGYGVGDVLGWLY-VSFSMGFIWW 956
                   + G K G   G  + +L+ V  +M   WW
Sbjct: 542 --------SVGAKIGIAFGVSVAFLFLVICAM--CWW 568

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 25/110 (22%)

Query: 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNV 696
           L LDN    G +P  +  L  L+S++L  N++ G +P SLG+ T LE +D+  N F+G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 697 PAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
           P  +G+                         L  L+IL L GN+LSG +P
Sbjct: 483 PESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 7e-12
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
           LR L +I+LS N   G IP  +  +  L  L+LS+N F+G IPE++G +  L  L+ + N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 865 RLEGEIP 871
            L G +P
Sbjct: 501 SLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 1e-11
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTL 672
           + L++  L G IP+     R+L  + L  N   G +P SLG+++ L  L L  N+ +G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 673 PVSLGNCTELETIDIGENEFSGNVPAWIGER 703
           P SLG  T L  +++  N  SG VPA +G R
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 2e-11
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 97  SSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQ 156
           ++ L G+IN    D   L  L+L+ N F G  +P   GS   L  LDLS   F G +P +
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGS-KRLENLDLSRNQFSGAVPRK 494

Query: 157 IGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSL 216
           +G+LS L  L L  N L G   ++L        L +LDLS   LS     P   + +  L
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELS---SCKKLVSLDLSHNQLS--GQIPASFSEMPVL 549

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
             L L+  QLS   P ++ N  SLV +++SHN    SL +T
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 391 VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
            ++ L L N  L G + N I K + L S++LS NSI G +P SLG ++SL  LD+S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 451 NGTVSEIHFANLSSLTFFYASRNSLT 476
           NG++ E     L+SL     + NSL+
Sbjct: 479 NGSIPE-SLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 96/311 (30%), Positives = 148/311 (47%), Gaps = 20/311 (6%)

Query: 210 TNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSL-IATQLYGLCNLVFL 268
            + L S+ V +LA    S+   L  ++ S L++LDL      +SL  +  L  L  L  L
Sbjct: 39  DSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSL 98

Query: 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRIS 328
           DL+ N  +  I   +   T+L  LDL +N+ + + P      S L+ L LS N++     
Sbjct: 99  DLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESL 155

Query: 329 SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCV 388
              L NL ++++LDLSFN+L   +P+  S   NL ++ LSG ++S       L       
Sbjct: 156 PSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLS----- 209

Query: 389 SDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNN 448
              LE LDLSN ++   L+  +   K L+ ++LS N +   +P S+G LS+L  LD+SNN
Sbjct: 210 --ALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 449 QLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL 507
           Q+    S I    +L++L     S NSL+  A P    +  L EL L            L
Sbjct: 266 QI----SSISSLGSLTNLRELDLSGNSLSN-ALPLIALLLLLLELLLNLLLTLKALELKL 320

Query: 508 HSQNHLVNLDI 518
           +S     N+  
Sbjct: 321 NSILLNNNILS 331

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 31/67 (46%), Positives = 39/67 (58%)

Query: 611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSG 670
           Q INL  N + G IP    +   L VL L  N F G +P SLG L+ LR L+L  N+LSG
Sbjct: 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Query: 671 TLPVSLG 677
            +P +LG
Sbjct: 505 RVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 52/150 (34%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 35  EREALLSFKQDLEDPSNRLATWIGDGDCC-----KWAGVIC--DNFTGH--VLELHLGNP 85
           E  AL + K  L  P  R   W  +GD C      W+G  C  D+  G   +  L L N 
Sbjct: 373 EVSALQTLKSSLGLPL-RFG-W--NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN- 427

Query: 86  WEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLS 145
                         L G I   +    HL  +NLS N  +G  IP  LGS+ +L  LDLS
Sbjct: 428 ------------QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLS 474

Query: 146 GAGFVGMIPNQIGNLSNLQYLNLRPNYLGG 175
              F G IP  +G L++L+ LNL  N L G
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 59/273 (21%), Positives = 100/273 (36%), Gaps = 47/273 (17%)

Query: 149 FVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPL 208
            +  +   +     LQ L+L  N LG      L  L   S L+ L L+   L       L
Sbjct: 69  GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-RGLRL 127

Query: 209 VTNALRS----LLVLQLAGCQLSHFPPLSVAN----FSSLVTLDLSHNQFDNSLIATQLY 260
           +   L+     L  L L   +L      ++A        L  L+L++N   ++ I     
Sbjct: 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187

Query: 261 GL---CNLVFLDLSDNNFQ----GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRL 313
           GL   CNL  LDL++N         + +T+ +  SL  L+L  N                
Sbjct: 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN---------------- 231

Query: 314 EYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSR----FCNLRSISLSG 369
              +L+       ++S LL    S+ +L LS N++     +  +       +L  + L G
Sbjct: 232 ---NLTDAGAA-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287

Query: 370 IQLS---HQKVSQVLAIFSGCVSDVLESLDLSN 399
            +      Q +++ L          LESL + +
Sbjct: 288 NKFGEEGAQLLAESLLEPGN----ELESLWVKD 316

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           ++LS N+ +G IP ++ + TSL  LDLS N F+  IPE L + + L  L+L+ N L GR+
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 328 SSVL 331
            + L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 26/63 (41%), Positives = 43/63 (68%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           L+S++LS  ++ G++   +G    L  +DLS NS +G +P SLG+L+SLR L+++ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 452 GTV 454
           G V
Sbjct: 504 GRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
           +L+ LDLS+N  + +          L+ L LS N L   IS      L S++SLDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 348 L 348
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.4 bits (133), Expect = 8e-08
 Identities = 70/216 (32%), Positives = 106/216 (49%), Gaps = 18/216 (8%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMG-NLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
            LL+  +L  L+L  N+     IP  +G +  NL+ LDLS    +  +P+ + NL NL+ 
Sbjct: 111 ELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167

Query: 166 LNLRPNYLGGLYVEDLGWLY-DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           L+L  N L      DL  L  +LS L NLDLSG  +S +     + +AL  L +   +  
Sbjct: 168 LDLSFNDL-----SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
           +L      S++N  +L  L+LS+N+ ++      +  L NL  LDLS+N  Q     ++ 
Sbjct: 223 EL----LSSLSNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNN--QISSISSLG 274

Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
           + T+LR LDLS N  S  +P        LE L    
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 34 SEREALLSFKQDL-EDPSNRLATWIG-DGDCCKWAGVICD 71
           +R+ALL+FK  L  DPS  L++W     D C W GV CD
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 338 IQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397
           I  L L    L   IP   S+  +L+SI+LSG  +    +   L   +      LE LDL
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI-RGNIPPSLGSITS-----LEVLDL 473

Query: 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLG 435
           S  + +GS+   +G+   L  ++L+ NS+SG+VP +LG
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           NL  LDLS+N          +   +L+ LDLS N+ + + PE  +    L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 281 DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
            T   W  +  L L +      IP  ++K   L+ ++LS N ++G I    L +++S++ 
Sbjct: 413 STKGKWF-IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEV 470

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
           LDLS+N     IP S  +  +LR ++L+G  LS
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALL-ESLDFSSN 864
           L  +DLS N F+G IP  +  L  LR LNL+ N  SGR+P  +G   L   S +F+ N
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 9e-06
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQ 574
           L + + G+   IPN     +     ++LS N I G IP +L  ++ L  LDLS N+ +G 
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 575 LP----LLASNVMVLDLSKNKLSGSI 596
           +P     L S + +L+L+ N LSG +
Sbjct: 482 IPESLGQLTS-LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           L L +   +G IP+ I     L+ ++LS N     IP  L   + LE L LS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRS 355
              L + L+S++ L+L+ N L  ++P +
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 32/124 (25%)

Query: 541 LSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLASNV---MVLDLSKNKLSGSI 596
           L L N  + G IPN ++++  L +++LS N++ G +P    ++    VLDLS N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 597 LHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS 656
                                       P+       L +L L+ N  +G++P +LG   
Sbjct: 483 ----------------------------PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Query: 657 LLRS 660
           L R+
Sbjct: 515 LHRA 518

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH 298
           +L +LDLS+N+    +      GL NL  LDLS NN     P+      SLR LDLS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 299 F 299
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242
           W  D   L+N  L G   + +S        LR L  + L+G  +    P S+ + +SL  
Sbjct: 418 WFIDGLGLDNQGLRGFIPNDIS-------KLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           LDLS+N F N  I   L  L +L  L+L+ N+  G +P
Sbjct: 471 LDLSYNSF-NGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           L S+DLS N ++     +   L +L+ LD+S N L  ++S   F+ L SL     S N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 25/241 (10%)

Query: 504 PSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGT 563
            S L S           S  +  +P+     +   + LS S         NL  +  L +
Sbjct: 39  DSNLESVAVNRLALNLSSNTLLLLPSSL-SRLLSLDLLSPSGISSLDGSENLLNLLPLPS 97

Query: 564 LDLSANNLSGQLPLLA--SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLA 621
           LDL+ N L   +  L   +N+  LDL  N ++  I   +    +     + ++L DN + 
Sbjct: 98  LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSN---LKELDLSDNKIE 153

Query: 622 GEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681
             +P    N   L  L L  N  +  LP  L  LS L +L L  N +S  LP  +   + 
Sbjct: 154 -SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210

Query: 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
           LE +D+  N                +I L+   +    +  LEL +     +    GN  
Sbjct: 211 LEELDLSNN---------------SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255

Query: 742 S 742
           +
Sbjct: 256 N 256

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
            L+ L LS+NRL   I     + L +++ LDLS N L    P +FS   +LRS+ LSG
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 44.1 bits (104), Expect = 4e-04
 Identities = 82/312 (26%), Positives = 132/312 (42%), Gaps = 47/312 (15%)

Query: 135 SMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLD 194
           S+  LR +DL G+  +  IP+ +   +NL+ L L  +    L VE    +  L+ LE+LD
Sbjct: 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL--SDCSSL-VELPSSIQYLNKLEDLD 687

Query: 195 LSGVDLSKVSNGPLVTNALRSLLVLQLAGC-QLSHFPPLSVANFSSLVTLDLSHNQFDNS 253
           +S  +   +   P   N L+SL  L L+GC +L  FP +S  N S L   + +  +F ++
Sbjct: 688 MSRCE--NLEILPTGIN-LKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIEEFPSN 743

Query: 254 LIATQLY--GLC-----------------------NLVFLDLSDNNFQGPIPDTIQNWTS 288
           L    L    LC                       +L  L LSD      +P +IQN   
Sbjct: 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803

Query: 289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS-NRLQG--RISSVLLENLSSIQSLDLSF 345
           L HL++ +      +P  +N    LE L LS  +RL+    IS+    N+S +       
Sbjct: 804 LEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDIST----NISDLNLSRTGI 858

Query: 346 NELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV----LAIFSGCVSDVLESLDLSNTT 401
            E+ W I + FS    L     + +Q     +S++       FS C +    S + S + 
Sbjct: 859 EEVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSE 917

Query: 402 LSGSLTNQIGKF 413
           ++ +  N   K 
Sbjct: 918 VAMATDNIHSKL 929

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           L  F P  ++    L +++LS N    + I   L  + +L  LDLS N+F G IP+++  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 286 WTSLRHLDLSSNHFSYLIP 304
            TSLR L+L+ N  S  +P
Sbjct: 489 LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 117 LNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGL 176
           L L     +G  IP  +  + +L+ ++LSG    G IP  +G++++L+ L+L  N   G 
Sbjct: 423 LGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 177 YVEDLGWLYDLSLLENLDLSGVDLS 201
             E LG    L+ L  L+L+G  LS
Sbjct: 482 IPESLG---QLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
           L+SLDLSN  L+            L  +DLS N+++   P +   L SLR LD+S N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
           L++LDLS   L+ + +G      L +L VL L+G  L+   P + +   SL +LDLS N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAF--KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 250 F 250
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           NL+ LDLS      +       L NL+ L+L  N L  +          L  L +LDLSG
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI---SPEAFSGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	960
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03150	623	hypothetical protein; Provisional	99.47
PLN03150	623	hypothetical protein; Provisional	99.46
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.5
KOG4341	483	consensus F-box protein containing LRR [General fu	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.97
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.69
KOG4308	478	consensus LRR-containing protein [Function unknown	94.8
KOG4308	478	consensus LRR-containing protein [Function unknown	93.89
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.13
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.99
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.78
smart00370	26	LRR Leucine-rich repeats, outliers.	87.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.26
smart00370	26	LRR Leucine-rich repeats, outliers.	85.26
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.26
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-71  Score=703.27  Aligned_cols=584  Identities=35%  Similarity=0.548  Sum_probs=396.1

Q ss_pred             CHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCC
Q 035852           32 VESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDF  111 (960)
Q Consensus        32 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l  111 (960)
                      .++|+.||++||+++.+|.+.+.+|....+||.|.||+|+. .++|+.|+|+++             .+.|.+++.+..+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-------------~i~~~~~~~~~~l   92 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-------------NISGKISSAIFRL   92 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-------------CccccCChHHhCC
Confidence            56899999999999988888889997668999999999985 579999999886             6777777778888


Q ss_pred             CCCCEEeCCCCCCCCCCCccccC-CCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCcc
Q 035852          112 EHLIYLNLSYNDFKGIQIPRFLG-SMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLL  190 (960)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L  190 (960)
                      ++|++|+|++|.+.+. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|++++|                   
T Consensus        93 ~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-------------------  150 (968)
T PLN00113         93 PYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-------------------  150 (968)
T ss_pred             CCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-------------------
Confidence            8888888888887763 665544 777777777777777665553  23444444444433                   


Q ss_pred             ceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEec
Q 035852          191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL  270 (960)
Q Consensus       191 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  270 (960)
                                                        .+.+..|..++++++|++|++++|.+. +.+|..++++++|++|++
T Consensus       151 ----------------------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        151 ----------------------------------MLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             ----------------------------------cccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeec
Confidence                                              333333334444444555555544444 344444444555555555


Q ss_pred             cCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCc
Q 035852          271 SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW  350 (960)
Q Consensus       271 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~  350 (960)
                      ++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+.+
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeec
Confidence            5555444445445555555555555555444444444444444444444444444444 334444444444444444443


Q ss_pred             ccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCC
Q 035852          351 KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQV  430 (960)
Q Consensus       351 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  430 (960)
                      .+|                                                      ..+..+++|++|++++|.+.+.+
T Consensus       275 ~~p------------------------------------------------------~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        275 PIP------------------------------------------------------PSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             cCc------------------------------------------------------hhHhhccCcCEEECcCCeeccCC
Confidence            333                                                      34444444444444444444444


Q ss_pred             cccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccC
Q 035852          431 PWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ  510 (960)
Q Consensus       431 p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  510 (960)
                      |..+.++++|++|++++|.+.+.+|. .+..++                                               
T Consensus       301 p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~-----------------------------------------------  332 (968)
T PLN00113        301 PELVIQLQNLEILHLFSNNFTGKIPV-ALTSLP-----------------------------------------------  332 (968)
T ss_pred             ChhHcCCCCCcEEECCCCccCCcCCh-hHhcCC-----------------------------------------------
Confidence            44444455555555555544433322 111111                                               


Q ss_pred             ccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccc
Q 035852          511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKN  590 (960)
Q Consensus       511 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n  590 (960)
                       +|+.|++++|.+.+.+|..                        +.                                  
T Consensus       333 -~L~~L~L~~n~l~~~~p~~------------------------l~----------------------------------  353 (968)
T PLN00113        333 -RLQVLQLWSNKFSGEIPKN------------------------LG----------------------------------  353 (968)
T ss_pred             -CCCEEECcCCCCcCcCChH------------------------Hh----------------------------------
Confidence             1111111111111111111                        11                                  


Q ss_pred             cccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecc
Q 035852          591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSG  670 (960)
Q Consensus       591 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  670 (960)
                                     .+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus       354 ---------------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        354 ---------------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             ---------------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence                           12233344444444444555556666677777777777777777777777888888888888887


Q ss_pred             cCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccc
Q 035852          671 TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS  750 (960)
Q Consensus       671 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  750 (960)
                      .+|..+.++++|+.|++++|++++.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~  496 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG  496 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence            7887788888888888888888877777665 67888888888888888777665 358899999999999999998776


Q ss_pred             ccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhc
Q 035852          751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR  830 (960)
Q Consensus       751 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~  830 (960)
                      +++.|                                                     +.|+|++|+++|.+|+.+++++
T Consensus       497 ~l~~L-----------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        497 SLSEL-----------------------------------------------------MQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             hhhcc-----------------------------------------------------CEEECcCCcceeeCChHHcCcc
Confidence            65544                                                     8999999999999999999999


Q ss_pred             ccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCC
Q 035852          831 ELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIG  910 (960)
Q Consensus       831 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~g  910 (960)
                      +|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|++++|+++|.||..++|.+|...+|.|
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~  603 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG  603 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCcc
Q 035852          911 DEYLCGPV  918 (960)
Q Consensus       911 n~~lcg~~  918 (960)
                      |+++||.+
T Consensus       604 n~~lc~~~  611 (968)
T PLN00113        604 NIDLCGGD  611 (968)
T ss_pred             CccccCCc
Confidence            99999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.6e-56  Score=561.01  Aligned_cols=515  Identities=33%  Similarity=0.538  Sum_probs=397.7

Q ss_pred             CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhc-CCCCCCEEeccCcccCCCCcccccCCCCCCEE
Q 035852          214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLY-GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL  292 (960)
Q Consensus       214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  292 (960)
                      .+++.|+|++|.+++..+..+..+++|++|++++|.+. +.+|..+. .+++|++|++++|++++.+|.  +.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            46777888888777777777777777888888777776 45555443 777777777777777776664  456777777


Q ss_pred             eCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCccc
Q 035852          293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL  372 (960)
Q Consensus       293 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  372 (960)
                      ++++|.+++.+|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+.+.+|..++.+++|          
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----------  214 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL----------  214 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc----------
Confidence            777777777777777777777777777777766666 566777777777777777766666666666555          


Q ss_pred             CCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCccccc
Q 035852          373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG  452 (960)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  452 (960)
                                          +.|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++.+
T Consensus       215 --------------------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        215 --------------------KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             --------------------cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence                                555555555556666666777777777777777766666666666666666666666655


Q ss_pred             ccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHh
Q 035852          453 TVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFW  532 (960)
Q Consensus       453 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~  532 (960)
                      .+|.                                                 .+..+++|+.|++++|.+.+.+|..+ 
T Consensus       275 ~~p~-------------------------------------------------~l~~l~~L~~L~Ls~n~l~~~~p~~~-  304 (968)
T PLN00113        275 PIPP-------------------------------------------------SIFSLQKLISLDLSDNSLSGEIPELV-  304 (968)
T ss_pred             cCch-------------------------------------------------hHhhccCcCEEECcCCeeccCCChhH-
Confidence            4443                                                 33334444555555554444444432 


Q ss_pred             hcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccE
Q 035852          533 KSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQI  612 (960)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~  612 (960)
                      ..+++|++|++++|.+.+.+|                       .                         .+..++.|+.
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~-----------------------~-------------------------~~~~l~~L~~  336 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIP-----------------------V-------------------------ALTSLPRLQV  336 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCC-----------------------h-------------------------hHhcCCCCCE
Confidence            233444444444444433322                       1                         1122456667


Q ss_pred             EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852          613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF  692 (960)
Q Consensus       613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (960)
                      |++++|.+++.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus       337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l  416 (968)
T PLN00113        337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF  416 (968)
T ss_pred             EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence            77777777778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCC
Q 035852          693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD  772 (960)
Q Consensus       693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~  772 (960)
                      ++.+|..+. .++.|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|..++.                     
T Consensus       417 ~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------------  474 (968)
T PLN00113        417 SGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------------  474 (968)
T ss_pred             eeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------------------
Confidence            999999887 7999999999999999999999999999999999999999888865421                     


Q ss_pred             CCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhcc
Q 035852          773 FSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA  852 (960)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~  852 (960)
                                                       ++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|+.+++
T Consensus       475 ---------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  521 (968)
T PLN00113        475 ---------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS  521 (968)
T ss_pred             ---------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence                                             23589999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC-cccCCCCccccCCCCCcc
Q 035852          853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE-AQFATFDSSSYIGDEYLC  915 (960)
Q Consensus       853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc  915 (960)
                      +++|+.|+|++|+++|.+|..++++++|+.|++++|+++|.+|.. ..+..+....+.+|+..+
T Consensus       522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999999999999999999999999986 334455555677887555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-38  Score=322.42  Aligned_cols=496  Identities=25%  Similarity=0.381  Sum_probs=301.7

Q ss_pred             CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852          238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS  317 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  317 (960)
                      ..|+.+.+++|.++  .+.+.+.++..|.+|++.+|++. ..|.+++.+..++.+++++|++.. +|+.++.+.+|+.++
T Consensus        45 v~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhh
Confidence            34555555555553  33444555555555555555555 445555555555555555555553 344555555555555


Q ss_pred             eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852          318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL  397 (960)
Q Consensus       318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L  397 (960)
                      .++|.+. +++ ..++.+..|+.++..+|+++ ..|..+..+.+|                              ..+++
T Consensus       121 ~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l------------------------------~~l~~  167 (565)
T KOG0472|consen  121 CSSNELK-ELP-DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKL------------------------------SKLDL  167 (565)
T ss_pred             cccccee-ecC-chHHHHhhhhhhhccccccc-cCchHHHHHHHH------------------------------HHhhc
Confidence            5555555 444 44555555555555555555 445555544444                              33344


Q ss_pred             CCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccc
Q 035852          398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL  477 (960)
Q Consensus       398 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~  477 (960)
                      .+|++....|..+. ++.|+++|...|-+. .+|+.++.+.+|..|++..|++. .+|  .|.++..|++++++.|.+..
T Consensus       168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~  242 (565)
T KOG0472|consen  168 EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEM  242 (565)
T ss_pred             cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHh
Confidence            44444422233232 566666666665554 55556666666666666666655 444  35555555555555555543


Q ss_pred             cCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccc
Q 035852          478 KANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTE  557 (960)
Q Consensus       478 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~  557 (960)
                      ....                        ...+++++..||+.+|++ .+.|..+ ..+++|++||+|+|.+++..+.+++
T Consensus       243 lpae------------------------~~~~L~~l~vLDLRdNkl-ke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgn  296 (565)
T KOG0472|consen  243 LPAE------------------------HLKHLNSLLVLDLRDNKL-KEVPDEI-CLLRSLERLDLSNNDISSLPYSLGN  296 (565)
T ss_pred             hHHH------------------------Hhcccccceeeecccccc-ccCchHH-HHhhhhhhhcccCCccccCCccccc
Confidence            3222                        223455555555555555 4556554 3467889999999999988888888


Q ss_pred             cCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEec--ccccccCCCCCcccCCCccc
Q 035852          558 VSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINL--EDNLLAGEIPDCWMNWRYLL  635 (960)
Q Consensus       558 l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~p~~l~~l~~L~  635 (960)
                      + .|+.|.+.+|++..+-....             ++          +...-|++|.=  ..-.++..  +.    .+-.
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii-------------~~----------gT~~vLKyLrs~~~~dglS~s--e~----~~e~  346 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREII-------------SK----------GTQEVLKYLRSKIKDDGLSQS--EG----GTET  346 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHH-------------cc----------cHHHHHHHHHHhhccCCCCCC--cc----cccc
Confidence            8 68888888887652211100             00          00011111110  00011000  00    0000


Q ss_pred             EEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCC---CcEEecCCCcccccCchHHhhcCcccceeee
Q 035852          636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE---LETIDIGENEFSGNVPAWIGERFPRMIILIL  712 (960)
Q Consensus       636 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L  712 (960)
                      .-    ....+..| ......+.+.|++++-+++ .+|+.......   .+..+++.|++. .+|..+. .+..+.+.-+
T Consensus       347 ~~----t~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~  418 (565)
T KOG0472|consen  347 AM----TLPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLV  418 (565)
T ss_pred             cC----CCCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHH
Confidence            00    00111122 2234567888888888887 66765544444   778899999998 7888776 3555554444


Q ss_pred             ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852          713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI  792 (960)
Q Consensus       713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (960)
                      ..|+..+-+|..++.++.|..|++++|.+. .+|.+++.+..                                      
T Consensus       419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~--------------------------------------  459 (565)
T KOG0472|consen  419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR--------------------------------------  459 (565)
T ss_pred             hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh--------------------------------------
Confidence            444444478888999999999999988775 67777665443                                      


Q ss_pred             EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852          793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK  872 (960)
Q Consensus       793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~  872 (960)
                                     |+.||+|+|+|. .+|+.+..+..++.+-.++|++...-|+.+++|.+|..|||.+|.+. .||.
T Consensus       460 ---------------Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp  522 (565)
T KOG0472|consen  460 ---------------LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP  522 (565)
T ss_pred             ---------------hheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence                           488999999998 89999998888888888889987655555999999999999999998 8999


Q ss_pred             CCCCCCCCCEEEcccCcceecCCCC
Q 035852          873 NTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       873 ~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      .++++++|++|++++|++.  .|..
T Consensus       523 ~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  523 ILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             hhccccceeEEEecCCccC--CCHH
Confidence            9999999999999999987  6653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-38  Score=322.30  Aligned_cols=472  Identities=24%  Similarity=0.375  Sum_probs=288.7

Q ss_pred             CccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCC
Q 035852          233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSR  312 (960)
Q Consensus       233 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  312 (960)
                      .+.++..|.+|++.+|++.  ..|++++.+..++.++.+.|++. .+|+.++.+.+|+++++++|.+... |+.++.+-.
T Consensus        63 dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~  138 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLD  138 (565)
T ss_pred             hhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeec-CchHHHHhh
Confidence            3445555555555555553  35555555556666666666655 5555566666666666666665543 444555666


Q ss_pred             CCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcc
Q 035852          313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL  392 (960)
Q Consensus       313 L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  392 (960)
                      |+.++..+|+++ ..| ..+.++.+|..+++.+|++.. .|+..-.++.|++++                          
T Consensus       139 l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld--------------------------  189 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLD--------------------------  189 (565)
T ss_pred             hhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcc--------------------------
Confidence            666666666665 444 445555666666666666552 333322344443333                          


Q ss_pred             cEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccC
Q 035852          393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR  472 (960)
Q Consensus       393 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~  472 (960)
                          ...|.++ .+|..++.+.+|..|++.+|++. .+| .|..|..|+++++..|.+. .+|.....+++++..||+.+
T Consensus       190 ----~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  190 ----CNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             ----cchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence                2233222 45556666666666666666665 445 5666666666666666655 55555555666666666666


Q ss_pred             ccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccC
Q 035852          473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI  552 (960)
Q Consensus       473 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  552 (960)
                      |+++                         .+|..+.-+.+|.+||+++|.+++- |..+ +++ .|+.|-+.+|.+...=
T Consensus       262 Nklk-------------------------e~Pde~clLrsL~rLDlSNN~is~L-p~sL-gnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  262 NKLK-------------------------EVPDEICLLRSLERLDLSNNDISSL-PYSL-GNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             cccc-------------------------cCchHHHHhhhhhhhcccCCccccC-Cccc-ccc-eeeehhhcCCchHHHH
Confidence            6554                         3444555566666666666666433 3332 345 7888999999875321


Q ss_pred             CCcccc---CCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc
Q 035852          553 PNLTEV---SQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM  629 (960)
Q Consensus       553 ~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  629 (960)
                      ..+-..   .-|++|.=   .+...-+           +..  .|             ..-..-+.    ..+..| ...
T Consensus       314 r~ii~~gT~~vLKyLrs---~~~~dgl-----------S~s--e~-------------~~e~~~t~----~~~~~~-~~~  359 (565)
T KOG0472|consen  314 REIISKGTQEVLKYLRS---KIKDDGL-----------SQS--EG-------------GTETAMTL----PSESFP-DIY  359 (565)
T ss_pred             HHHHcccHHHHHHHHHH---hhccCCC-----------CCC--cc-------------cccccCCC----CCCccc-chh
Confidence            111111   00111110   0000000           000  00             00000000    001111 223


Q ss_pred             CCCcccEEECCCCccccCCCcCcCCCCC---CcEEECCCCeecccCCcCCcCCCCCcE-EecCCCcccccCchHHhhcCc
Q 035852          630 NWRYLLVLRLDNNKFTGKLPTSLGALSL---LRSLHLRNNNLSGTLPVSLGNCTELET-IDIGENEFSGNVPAWIGERFP  705 (960)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~~p~~l~~l~~L~~-L~Ls~N~l~g~ip~~~~~~l~  705 (960)
                      ...+.+.|+++.-+++ .+|........   ....+++.|++. .+|..+..+..+.+ +++++|+++ .+|..+. .++
T Consensus       360 ~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~  435 (565)
T KOG0472|consen  360 AIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQ  435 (565)
T ss_pred             hhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhh
Confidence            3456788888888887 66765544333   788899999998 78888777776655 456666664 7887776 699


Q ss_pred             ccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccc
Q 035852          706 RMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQ  785 (960)
Q Consensus       706 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (960)
                      +|..|+|++|.+. .+|.+++.+..|+.||++.|+|. .+|.++..+..+                              
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l------------------------------  483 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL------------------------------  483 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH------------------------------
Confidence            9999999999887 78999999999999999999986 778777655444                              


Q ss_pred             cccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCc
Q 035852          786 FVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR  865 (960)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~  865 (960)
                                             +.+-.++|++...-|..++++.+|+.|||.+|.+. .||+.+|+|++|+.|++++|.
T Consensus       484 -----------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  484 -----------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             -----------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence                                   44445668887555555999999999999999997 789999999999999999999


Q ss_pred             cc
Q 035852          866 LE  867 (960)
Q Consensus       866 l~  867 (960)
                      ++
T Consensus       540 fr  541 (565)
T KOG0472|consen  540 FR  541 (565)
T ss_pred             cC
Confidence            98

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-35  Score=311.60  Aligned_cols=250  Identities=26%  Similarity=0.359  Sum_probs=157.4

Q ss_pred             CcEEeCCCCCCCCChhHHhhcCC--CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852          240 LVTLDLSHNQFDNSLIATQLYGL--CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS  317 (960)
Q Consensus       240 L~~L~Ls~n~l~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  317 (960)
                      -+.||.+++.+. ...-..+.+.  ..-+.|++++|++...-+..|.++++|+.+++.+|.++. +|...+...+|+.|+
T Consensus        54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLD  131 (873)
T ss_pred             ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEe
Confidence            345677776664 1111111111  123345666665555555555555555555555555543 344333334455555


Q ss_pred             eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852          318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL  397 (960)
Q Consensus       318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L  397 (960)
                      |.+|.++ .+..+.+..++.|+.||||.|.++..--..|..-.+                              +++|+|
T Consensus       132 L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n------------------------------i~~L~L  180 (873)
T KOG4194|consen  132 LRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN------------------------------IKKLNL  180 (873)
T ss_pred             eeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC------------------------------ceEEee
Confidence            5555555 344355555555555555555554222223333233                              466666


Q ss_pred             CCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccc
Q 035852          398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL  477 (960)
Q Consensus       398 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~  477 (960)
                      ++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++. .+....|.++++|+.|.+..|.+..
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~k  259 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISK  259 (873)
T ss_pred             ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCccc
Confidence            667666555666777888888889988888666677777888888888888876 4545578888888888888888888


Q ss_pred             cCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCC
Q 035852          478 KANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGI  523 (960)
Q Consensus       478 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~  523 (960)
                      ..+..|..+.++++|+++.|++...-..|+.+++.|+.|+++.|.+
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            8888888888888888888887766666666666666666555555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=307.05  Aligned_cols=369  Identities=22%  Similarity=0.251  Sum_probs=278.6

Q ss_pred             cccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeec
Q 035852          391 VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYA  470 (960)
Q Consensus       391 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l  470 (960)
                      .-+.|++++|++...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.+. .+....++.++.|+.||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            3478999999999888999999999999999999998 78866666677999999999998 566668999999999999


Q ss_pred             cCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccc
Q 035852          471 SRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG  550 (960)
Q Consensus       471 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  550 (960)
                      +.|.|+.+..+.|..-.++++|++++|.++..-...|..+.+|..|.++.|++ ..+|...|+.+++|+.|+|..|++.-
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccceee
Confidence            99999999999999889999999999999988888899999999999999988 56777778888888888888887763


Q ss_pred             c-CCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc
Q 035852          551 E-IPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM  629 (960)
Q Consensus       551 ~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  629 (960)
                      . .-.+..+                                                 ++|+.+.+..|.++..-...|-
T Consensus       236 ve~ltFqgL-------------------------------------------------~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  236 VEGLTFQGL-------------------------------------------------PSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             ehhhhhcCc-------------------------------------------------hhhhhhhhhhcCcccccCccee
Confidence            2 1133344                                                 4444444444544444445566


Q ss_pred             CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852          630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII  709 (960)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  709 (960)
                      .+.++++|+|..|++...--.++.+++.|+.|++++|.|...-++++.-+++|++|||++|+++ .+++.-+..+..|++
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~  345 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEE  345 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhh
Confidence            6777777777777777666667777777777777777777777777777777777777777777 444444446777777


Q ss_pred             eeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852          710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE  789 (960)
Q Consensus       710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (960)
                      |+|++|++...-...|..+++|+.|||++|.+++.|.+.-.-                                      
T Consensus       346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~--------------------------------------  387 (873)
T KOG4194|consen  346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA--------------------------------------  387 (873)
T ss_pred             hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh--------------------------------------
Confidence            777777777555566777778888888888777555442111                                      


Q ss_pred             eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcC
Q 035852          790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSS  863 (960)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~  863 (960)
                                 | ..+++|+.|+|-+|++...--..|..+.+|+.|||.+|.+...-|+.|..| .|+.|-++.
T Consensus       388 -----------f-~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  388 -----------F-NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             -----------h-ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence                       1 124556778888888874334567778888888888888877777777777 677665544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=8.2e-35  Score=324.90  Aligned_cols=244  Identities=26%  Similarity=0.385  Sum_probs=197.3

Q ss_pred             CccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCC
Q 035852          579 ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLL  658 (960)
Q Consensus       579 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  658 (960)
                      +.+++++++++|++++ +|    .++..|.+++.+...+|+++ .+|..+...++|+.|.+..|.+. .+|....++++|
T Consensus       240 p~nl~~~dis~n~l~~-lp----~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSN-LP----EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             cccceeeecchhhhhc-ch----HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence            4566777777777665 22    34555899999999999995 67888888899999999999998 778888889999


Q ss_pred             cEEECCCCeecccCCcCC-cCCC-CCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEee
Q 035852          659 RSLHLRNNNLSGTLPVSL-GNCT-ELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVL  736 (960)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  736 (960)
                      ++|+|..|++. .+|+.+ .-.. +|+.|+.+.|++. ..|..-.+.++.|+.|++.+|.++...-+.+.+++.|++|+|
T Consensus       313 ~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            99999999998 666643 3333 3788889999988 666544456889999999999999888888999999999999


Q ss_pred             cCCcCccccCc-cccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccC
Q 035852          737 AGNNLSGTIPT-CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN  815 (960)
Q Consensus       737 s~N~l~g~ip~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  815 (960)
                      ++|++. ++|. ++.++                                                     ..|++|+||+
T Consensus       391 syNrL~-~fpas~~~kl-----------------------------------------------------e~LeeL~LSG  416 (1081)
T KOG0618|consen  391 SYNRLN-SFPASKLRKL-----------------------------------------------------EELEELNLSG  416 (1081)
T ss_pred             cccccc-cCCHHHHhch-----------------------------------------------------HHhHHHhccc
Confidence            999986 5554 33333                                                     3358999999


Q ss_pred             CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccccc-CCCCCCCCCCCCEEEcccCc
Q 035852          816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGE-IPKNTVNLVFLSHFNISYNN  889 (960)
Q Consensus       816 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~l~ls~N~  889 (960)
                      |+|+ .+|.++.+++.|++|..-+|++. ..| ++.++++|+.+|+|.|+|+-. +|...-. +.|++||+++|.
T Consensus       417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             chhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            9999 89999999999999999999998 677 799999999999999999853 4544332 789999999995

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.5e-34  Score=317.78  Aligned_cols=496  Identities=26%  Similarity=0.308  Sum_probs=264.9

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852          103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG  182 (960)
Q Consensus       103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~  182 (960)
                      .||..+..-.++..|+++.|.+.... -+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.|.        
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~--------   81 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR--------   81 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--------
Confidence            34545555555555555555544321 223333334555555555533 34445555555555555555443        


Q ss_pred             cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852          183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL  262 (960)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  262 (960)
                                         ..   +....++.+|+++.|..|.+...+ ..+..+++|++||+++|.+  +.+|..+..+
T Consensus        82 -------------------~v---p~s~~~~~~l~~lnL~~n~l~~lP-~~~~~lknl~~LdlS~N~f--~~~Pl~i~~l  136 (1081)
T KOG0618|consen   82 -------------------SV---PSSCSNMRNLQYLNLKNNRLQSLP-ASISELKNLQYLDLSFNHF--GPIPLVIEVL  136 (1081)
T ss_pred             -------------------hC---chhhhhhhcchhheeccchhhcCc-hhHHhhhcccccccchhcc--CCCchhHHhh
Confidence                               32   355666777788888777766543 4677777888888888877  3567777777


Q ss_pred             CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD  342 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  342 (960)
                      ..++.+..++|.....    ++... ++++++..|.+.+.++..+..++.  .|+|++|.+. .   ..+.++++|+.|.
T Consensus       137 t~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~  205 (1081)
T KOG0618|consen  137 TAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLH  205 (1081)
T ss_pred             hHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhh
Confidence            7777777777732212    22222 777777777777777666666655  6777777765 2   3466777777777


Q ss_pred             CCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecC
Q 035852          343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS  422 (960)
Q Consensus       343 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  422 (960)
                      ...|++....    -.-++|+.|+.+.|.++......        .+.+|+.++++.|+++ .+|++++.+.+|+.++..
T Consensus       206 c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--------~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  206 CERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--------VPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN  272 (1081)
T ss_pred             hhhcccceEE----ecCcchheeeeccCcceeecccc--------ccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence            7777665221    12356666666666555222111        1233555555555555 344555555555555555


Q ss_pred             CCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCC
Q 035852          423 ENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPP  502 (960)
Q Consensus       423 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~  502 (960)
                      +|+++ .+|..+...++|++|.+..|.+. .+|. ....++.                                      
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~-~le~~~s--------------------------------------  311 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP-FLEGLKS--------------------------------------  311 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC-cccccce--------------------------------------
Confidence            55553 44555555555555555555544 2222 2222333                                      


Q ss_pred             CCcccccCccCcEEeccCCCCcCCCchhHhhcCCc-ccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCCCc
Q 035852          503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQ-FNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLAS  580 (960)
Q Consensus       503 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~  580 (960)
                                |+.|++..|++ ..+|+.++..... ++.|+.+.|++..... .-..                     .+
T Consensus       312 ----------L~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~---------------------~~  359 (1081)
T KOG0618|consen  312 ----------LRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN---------------------HA  359 (1081)
T ss_pred             ----------eeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchh---------------------hH
Confidence                      33333333333 2233333222222 4444444444332110 0111                     22


Q ss_pred             cCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcE
Q 035852          581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRS  660 (960)
Q Consensus       581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  660 (960)
                      .|+.|.+.+|.++...    ...+.+...|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..+..|++
T Consensus       360 ~Lq~LylanN~Ltd~c----~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSC----FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT  434 (1081)
T ss_pred             HHHHHHHhcCcccccc----hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence            3333444444443321    122334556666666666665444445666666777777777766 56666666677777


Q ss_pred             EECCCCeecccCCcCCcCCCCCcEEecCCCcccc-cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCC
Q 035852          661 LHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG-NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN  739 (960)
Q Consensus       661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  739 (960)
                      |...+|++. .+| .+..+++|+.+|+|.|+++- .+|...  .-++|++||+++|.=.-..-..+..++.+...++.-|
T Consensus       435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC--CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            777777666 566 56666777777777776652 223222  1256777777766532222233444455555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7.8e-33  Score=294.44  Aligned_cols=358  Identities=28%  Similarity=0.416  Sum_probs=230.1

Q ss_pred             chhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCc
Q 035852          405 SLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV  484 (960)
Q Consensus       405 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  484 (960)
                      .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+..|++.....+..+..+..|+.|++++|+++        
T Consensus        46 ~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~--------  116 (1255)
T KOG0444|consen   46 QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR--------  116 (1255)
T ss_pred             hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh--------
Confidence            34555555555555555555554 333344555555555555555432211113334444444444444443        


Q ss_pred             ccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeE
Q 035852          485 PVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTL  564 (960)
Q Consensus       485 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L  564 (960)
                                       ..|..+....++..|++++|++ +.||..++.+++.|-+||||+|++...+|.+..+..|++|
T Consensus       117 -----------------EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  117 -----------------EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL  178 (1255)
T ss_pred             -----------------hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence                             3455566677777788888877 6788888888899999999999998777777777778888


Q ss_pred             EcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCcc
Q 035852          565 DLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKF  644 (960)
Q Consensus       565 ~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  644 (960)
                      +|++|++.-                         +...                        .+..+++|++|.+++.+-
T Consensus       179 ~Ls~NPL~h-------------------------fQLr------------------------QLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  179 KLSNNPLNH-------------------------FQLR------------------------QLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             hcCCChhhH-------------------------HHHh------------------------cCccchhhhhhhcccccc
Confidence            888776541                         0001                        112234455555554433


Q ss_pred             c-cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCch
Q 035852          645 T-GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL  723 (960)
Q Consensus       645 ~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~  723 (960)
                      + .-+|.++..+.+|+.+|++.|.+. .+|+++.++.+|+.|+||+|+|+ .+..... ...+|++|+++.|+++ .+|.
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchH
Confidence            2 235555666666666666666665 55666666666666666666665 3443333 3456677777777776 6677


Q ss_pred             hhcCCCCCCeEeecCCcCc-cccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhh
Q 035852          724 ELCHLAFLKILVLAGNNLS-GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFK  802 (960)
Q Consensus       724 ~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (960)
                      .++.++.|+.|.+.+|+++ .-||..|+.+.+|                                               
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-----------------------------------------------  318 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-----------------------------------------------  318 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccchhhhhhh-----------------------------------------------
Confidence            7777777777777777765 2477777776665                                               


Q ss_pred             hhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCE
Q 035852          803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSH  882 (960)
Q Consensus       803 ~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~  882 (960)
                            +.+..++|.+. ..|+.+..+..|+.|.|++|++- .+|+.|.-|+.|+.|||..|.----.|.--..-++|+.
T Consensus       319 ------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef  390 (1255)
T KOG0444|consen  319 ------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF  390 (1255)
T ss_pred             ------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence                  56667788877 89999999999999999999987 68999999999999999999644233332222367776


Q ss_pred             EEcccC-----cceecCCCC
Q 035852          883 FNISYN-----NLSGEVPDE  897 (960)
Q Consensus       883 l~ls~N-----~l~g~iP~~  897 (960)
                      -|+-+-     +|-|..|.+
T Consensus       391 YNIDFSLq~QlrlAG~~pas  410 (1255)
T KOG0444|consen  391 YNIDFSLQHQLRLAGQMPAS  410 (1255)
T ss_pred             eecceehhhHHhhccCCccc
Confidence            665542     577776653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.6e-32  Score=292.12  Aligned_cols=371  Identities=28%  Similarity=0.404  Sum_probs=227.3

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852          109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS  188 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~  188 (960)
                      +-++..|-.|+++|.|+|..+|..+..+++++.|.|...++. .+|..++.|.+|++|.+++|++..+..    .++.+ 
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG----ELs~L-   77 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG----ELSDL-   77 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----hhccc-
Confidence            456678888999999998789999999999999999988854 689999999999999998887654321    12222 


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL  268 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  268 (960)
                                                                       +.|+.+++..|++....+|..+..+..|+.|
T Consensus        78 -------------------------------------------------p~LRsv~~R~N~LKnsGiP~diF~l~dLt~l  108 (1255)
T KOG0444|consen   78 -------------------------------------------------PRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL  108 (1255)
T ss_pred             -------------------------------------------------hhhHHHhhhccccccCCCCchhcccccceee
Confidence                                                             3333333333333323344444444444444


Q ss_pred             eccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852          269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL  348 (960)
Q Consensus       269 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l  348 (960)
                      ||+.|++. +.|..+..-+++-+|+||+|+|..+....|.+++.|-.|||++|++. .+| .....+..|++|+|++|.+
T Consensus       109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP-PQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP-PQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             ecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC-HHHHHHhhhhhhhcCCChh
Confidence            44444444 34444444444444444444444433333344444444444444443 333 3344444445555555444


Q ss_pred             CcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC
Q 035852          349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG  428 (960)
Q Consensus       349 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  428 (960)
                      ...--..+..+++|+.|.+++.+-+                             ...+|.++..+.+|..+|++.|.+. 
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRT-----------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRT-----------------------------LDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccch-----------------------------hhcCCCchhhhhhhhhccccccCCC-
Confidence            3221111222223322222222111                             0134445555556666666666655 


Q ss_pred             CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccc
Q 035852          429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLH  508 (960)
Q Consensus       429 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  508 (960)
                      .+|+.+.++++|+.|+|++|+++. +..                                                    
T Consensus       236 ~vPecly~l~~LrrLNLS~N~ite-L~~----------------------------------------------------  262 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITE-LNM----------------------------------------------------  262 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceee-eec----------------------------------------------------
Confidence            556566556666666665555441 000                                                    


Q ss_pred             cCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcc
Q 035852          509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLS  588 (960)
Q Consensus       509 ~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls  588 (960)
                                       .  .   ..                                            +         
T Consensus       263 -----------------~--~---~~--------------------------------------------W---------  267 (1255)
T KOG0444|consen  263 -----------------T--E---GE--------------------------------------------W---------  267 (1255)
T ss_pred             -----------------c--H---HH--------------------------------------------H---------
Confidence                             0  0   00                                            0         


Q ss_pred             cccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCcccc-CCCcCcCCCCCCcEEECCCCe
Q 035852          589 KNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG-KLPTSLGALSLLRSLHLRNNN  667 (960)
Q Consensus       589 ~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~  667 (960)
                                         ..++.|++|.|+++ .+|++++.++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|+
T Consensus       268 -------------------~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  268 -------------------ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             -------------------hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence                               12222333333333 578888899999999999999873 489999999999999999999


Q ss_pred             ecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccc
Q 035852          668 LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH  718 (960)
Q Consensus       668 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~  718 (960)
                      +. ..|+++..|..|+.|.|++|++. .+|+.+. -++.|+.|+++.|.--
T Consensus       328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence            97 89999999999999999999998 8999987 7999999999999755

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.2e-25  Score=225.95  Aligned_cols=301  Identities=22%  Similarity=0.227  Sum_probs=174.2

Q ss_pred             CCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccC-ccccccCCCCCcccccceEEe
Q 035852          415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR-NSLTLKANPNWVPVFQLEELD  493 (960)
Q Consensus       415 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~  493 (960)
                      .-++++|..|+|+...|.+|+.+++|+.|||++|.|+ .|.+.+|.++++|..|-+.+ |+|+......|..+..++.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4455666666666555556666666666666666665 34444666666665555554 666666666666666666666


Q ss_pred             cccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcC
Q 035852          494 LRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG  573 (960)
Q Consensus       494 l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~  573 (960)
                      +.-|.+.......+..++++..|.+.+|.+ ..++...+..+..++.+++..|.+...    .+++.+..          
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icd----CnL~wla~----------  211 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICD----CNLPWLAD----------  211 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccc----cccchhhh----------
Confidence            655555555555555555555555555554 334444444455555555555543210    11110000          


Q ss_pred             CCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCC-CcccEEECCCCccccCCCc-C
Q 035852          574 QLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW-RYLLVLRLDNNKFTGKLPT-S  651 (960)
Q Consensus       574 ~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~-~  651 (960)
                                  ++..+.          .++++.+...-..+.++++..+-+..|... .++..-..+.+...+..|. .
T Consensus       212 ------------~~a~~~----------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c  269 (498)
T KOG4237|consen  212 ------------DLAMNP----------IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC  269 (498)
T ss_pred             ------------HHhhch----------hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH
Confidence                        000000          011112222222233333332222222211 1222112233333334443 5


Q ss_pred             cCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCC
Q 035852          652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL  731 (960)
Q Consensus       652 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  731 (960)
                      |..+++|++|+|++|++++.-+.+|..+..+++|.|..|++. .+...++.++..|+.|+|.+|+|+...|..|..+.+|
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            788888888888888888888888888888888888888887 6777777788889999999999988888888888889


Q ss_pred             CeEeecCCcCccccCccccccccchhcc
Q 035852          732 KILVLAGNNLSGTIPTCISNFTAMATFL  759 (960)
Q Consensus       732 ~~L~Ls~N~l~g~ip~~~~~l~~l~~~~  759 (960)
                      ..|.+-.|++.     |-..+.++..|.
T Consensus       349 ~~l~l~~Np~~-----CnC~l~wl~~Wl  371 (498)
T KOG4237|consen  349 STLNLLSNPFN-----CNCRLAWLGEWL  371 (498)
T ss_pred             eeeehccCccc-----CccchHHHHHHH
Confidence            99998888874     344445554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=4.6e-25  Score=224.84  Aligned_cols=278  Identities=24%  Similarity=0.267  Sum_probs=209.7

Q ss_pred             CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccC-cccCCCCcccccCCCCCCEE
Q 035852          214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD-NNFQGPIPDTIQNWTSLRHL  292 (960)
Q Consensus       214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L  292 (960)
                      +.-..++|..|+|+.+++.+|..+++||.|||++|.|+ .+.|+.|.++++|..|.+.+ |+|+...-..|+++..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35678999999999999999999999999999999999 88999999999999888877 88986666789999999999


Q ss_pred             eCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC------------cccccccccCC
Q 035852          293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE------------WKIPRSFSRFC  360 (960)
Q Consensus       293 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~------------~~~p~~l~~l~  360 (960)
                      .+.-|++.....+.|..+++|..|.+.+|.+. .++...+..+..++.+.+..|.+.            ...|..++...
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            99999999998999999999999999999997 676567889999999999888732            12233344444


Q ss_pred             CCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchh-hhhcCCCCCCEEecCCCcCCCCCcccccCCCC
Q 035852          361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT-NQIGKFKVLNSVDLSENSISGQVPWSLGKLSS  439 (960)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  439 (960)
                      ......+.+.++.......+.....     .+.+--.+.+...+..| ..|..+++|++|++++|+++++-+.+|.....
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~e-----sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLE-----SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHH-----hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence            4444445555555444443332210     01111112222333333 34777888888888888888777778888888


Q ss_pred             CcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccC
Q 035852          440 LRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYL  499 (960)
Q Consensus       440 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l  499 (960)
                      ++.|.|..|++. .+....|.++..|+.|++++|+|+...+.+|....+|.+|.+-.|.+
T Consensus       300 l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  300 LQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            888888888876 56666788888888888888888887777777777777777766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=4.8e-22  Score=231.89  Aligned_cols=173  Identities=24%  Similarity=0.389  Sum_probs=77.1

Q ss_pred             CcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccc
Q 035852          513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL  592 (960)
Q Consensus       513 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l  592 (960)
                      -..|+++++++. .+|..+.   ++|+.|++++|+++. +|..  +++|++|++++|+++. +|..+++|+.|++++|.+
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence            344555555553 4454432   245556666665553 2321  3455666666665553 344445555555555554


Q ss_pred             cccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccC
Q 035852          593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTL  672 (960)
Q Consensus       593 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  672 (960)
                      .. +|..       ...|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+
T Consensus       275 ~~-Lp~l-------p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L  337 (788)
T PRK15387        275 TH-LPAL-------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL  337 (788)
T ss_pred             hh-hhhc-------hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence            42 1110       1234444555554442 2221   2345555555555542 2321   123444455555544 23


Q ss_pred             CcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccc
Q 035852          673 PVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH  718 (960)
Q Consensus       673 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~  718 (960)
                      |..   ..+|++|+|++|+++ .+|..    .++|+.|++++|+++
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT  375 (788)
T ss_pred             ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhccccc
Confidence            321   124445555555554 23321    233444444444444

>PLN03210 Resistant to P

Probab=99.87  E-value=4.9e-21  Score=242.03  Aligned_cols=343  Identities=20%  Similarity=0.217  Sum_probs=167.6

Q ss_pred             cchhhhcCCCCCcEeeccCcccc------ccCCCCCccc-ccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCC
Q 035852          454 VSEIHFANLSSLTFFYASRNSLT------LKANPNWVPV-FQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT  526 (960)
Q Consensus       454 i~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~  526 (960)
                      +....|.++++|+.|.+..+...      ...+..+..+ .+|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            33446777888888887655321      1122223322 34666666665543 334333 3456666666666543 2


Q ss_pred             CchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCC
Q 035852          527 IPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNG  606 (960)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~  606 (960)
                      ++..+ ..+++|+.|+++++.....+|.+..+++|+.|++++|.....+|..                         +..
T Consensus       626 L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-------------------------i~~  679 (1153)
T PLN03210        626 LWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-------------------------IQY  679 (1153)
T ss_pred             ccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-------------------------hhc
Confidence            33322 3455666666665554455555555555666666555544444432                         223


Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      +++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|..+ .+++|+.|+
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~  753 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELI  753 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccc
Confidence            4444444444443333444333 3445555555555443333322   234455555555543 344333 344444444


Q ss_pred             cCCCccc---c---cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccC
Q 035852          687 IGENEFS---G---NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLG  760 (960)
Q Consensus       687 Ls~N~l~---g---~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~  760 (960)
                      +.++...   +   .++.......++|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+ ++++|+.+..
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L  832 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL  832 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence            4442211   0   0111111123455555555555555555555555555555555554444444433 2333322111


Q ss_pred             CCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcc
Q 035852          761 SDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN  840 (960)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  840 (960)
                      +++....      .+                          ....++++.|+|++|.++ .+|.+++.+++|+.|+|++|
T Consensus       833 s~c~~L~------~~--------------------------p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        833 SGCSRLR------TF--------------------------PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCccc------cc--------------------------cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence            1100000      00                          001133567777777776 67777777777777777764


Q ss_pred             cCcccCchhhccCCCCCEEECcCCc
Q 035852          841 FFSGRIPENIGAMALLESLDFSSNR  865 (960)
Q Consensus       841 ~l~g~iP~~l~~l~~L~~L~Ls~N~  865 (960)
                      +--..+|..+..++.|+.|++++|.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCc
Confidence            3333466667777777777777764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=5.3e-21  Score=241.69  Aligned_cols=338  Identities=19%  Similarity=0.180  Sum_probs=250.0

Q ss_pred             cccccCccCcEEeccCCC------CcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCC--
Q 035852          505 SWLHSQNHLVNLDISDSG------IVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP--  576 (960)
Q Consensus       505 ~~~~~~~~L~~L~Ls~n~------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p--  576 (960)
                      ..|..+++|+.|.+..+.      ....+|..+....++|+.|++.++.+...+..+ ...+|+.|++++|.+.....  
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence            445666677777665442      222345544433456777777777765433333 45677888888877653221  


Q ss_pred             CCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCC
Q 035852          577 LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS  656 (960)
Q Consensus       577 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  656 (960)
                      ..+++|+.++++++...+.+|.     +..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ +++
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            1256788888887765555552     4567899999999998888899999999999999999987777888776 789


Q ss_pred             CCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccc-------cccCchhhcCCC
Q 035852          657 LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKF-------HGVFPLELCHLA  729 (960)
Q Consensus       657 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~  729 (960)
                      +|+.|++++|...+.+|..   .++|++|++++|.+. .+|..+  .+++|+.|.+.++..       ....|......+
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccc
Confidence            9999999999877777754   467999999999987 788776  488999999887432       112222334467


Q ss_pred             CCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhcccc
Q 035852          730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLT  809 (960)
Q Consensus       730 ~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  809 (960)
                      +|+.|++++|+..+.+|..+++++.|+.+...++......|.                              ...+++|+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------------------------~~~L~sL~  828 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------------------------GINLESLE  828 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------------------------CCCccccC
Confidence            899999999999999999999999987765433211110000                              01356789


Q ss_pred             EEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCc
Q 035852          810 NIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNN  889 (960)
Q Consensus       810 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~  889 (960)
                      .|+|++|.....+|..   .++|+.|+|++|.++ .+|.+++.+++|+.|+|++|+--..+|..+.+++.|+.++++++.
T Consensus       829 ~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        829 SLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            9999998766677753   367899999999998 689999999999999999965445689999999999999999884

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.1e-21  Score=228.95  Aligned_cols=264  Identities=23%  Similarity=0.279  Sum_probs=192.6

Q ss_pred             CcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEec
Q 035852          536 TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINL  615 (960)
Q Consensus       536 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L  615 (960)
                      ..-..|++++|.++..++.+.  ++|+.|++++|+++. +|..+++|++|++++|+++. +|..       .+.|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeec
Confidence            345678999998885333443  468899999998885 67777888888888888874 3421       356778888


Q ss_pred             ccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccccc
Q 035852          616 EDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN  695 (960)
Q Consensus       616 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  695 (960)
                      ++|.++. +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++ .
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~  336 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-S  336 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc-c
Confidence            8887763 4432   246777888888887 45542   3678888888888874 45422   35677788888887 4


Q ss_pred             CchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCC
Q 035852          696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSF  775 (960)
Q Consensus       696 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  775 (960)
                      +|.    ..++|+.|++++|++++ +|..   .++|+.|++++|++++ +|...                          
T Consensus       337 LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~--------------------------  381 (788)
T PRK15387        337 LPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP--------------------------  381 (788)
T ss_pred             ccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc--------------------------
Confidence            664    13467888888888874 4432   3567777888887763 45321                          


Q ss_pred             CCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCC
Q 035852          776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL  855 (960)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  855 (960)
                                                    ..|+.|++++|+|+ .+|...   +.|+.|++|+|++++ +|...   .+
T Consensus       382 ------------------------------~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~  423 (788)
T PRK15387        382 ------------------------------SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTS-LPMLP---SG  423 (788)
T ss_pred             ------------------------------cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCC-CCcch---hh
Confidence                                          23478999999999 577543   578999999999985 78643   46


Q ss_pred             CCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          856 LESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       856 L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      |+.|++++|+++ .||..+.+++.|+.+++++|+|+|.+|..
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            788999999998 79999999999999999999999998864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=5.8e-20  Score=216.36  Aligned_cols=224  Identities=25%  Similarity=0.381  Sum_probs=128.4

Q ss_pred             CCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852          561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD  640 (960)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  640 (960)
                      ++.|++++|+++...+..+.+|+.|++++|+++. +|..+      ...|+.|++++|++. .+|..+.  ++|+.|+++
T Consensus       201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts-LP~~l------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTS-IPATL------PDTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CcEEEecCCCCCcCChhhccCCCEEECCCCcccc-CChhh------hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4444444444443222223445555555555442 22211      124556666666655 4454443  356777777


Q ss_pred             CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc
Q 035852          641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV  720 (960)
Q Consensus       641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~  720 (960)
                      +|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ 
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-  339 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-  339 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-
Confidence            77776 4565543  46777777777776 3554432  35677777777776 455543   3567777777777664 


Q ss_pred             CchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchh
Q 035852          721 FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLT  800 (960)
Q Consensus       721 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (960)
                      +|..+.  ++|+.|++++|+++ .+|..+.                                                  
T Consensus       340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--------------------------------------------------  366 (754)
T PRK15370        340 LPASLP--PELQVLDVSKNQIT-VLPETLP--------------------------------------------------  366 (754)
T ss_pred             CChhhc--CcccEEECCCCCCC-cCChhhc--------------------------------------------------
Confidence            555442  56777777777765 3443221                                                  


Q ss_pred             hhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhh----ccCCCCCEEECcCCccc
Q 035852          801 FKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI----GAMALLESLDFSSNRLE  867 (960)
Q Consensus       801 ~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l----~~l~~L~~L~Ls~N~l~  867 (960)
                           +.|+.|+|++|+|+ .+|..+..  .|+.||+++|+++ .+|+.+    +.++.+..|+|.+|.++
T Consensus       367 -----~~L~~LdLs~N~Lt-~LP~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 -----PTITTLDVSRNALT-NLPENLPA--ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -----CCcCEEECCCCcCC-CCCHhHHH--HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                 12467777777777 56666543  5777777777776 445443    33466677777777776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.3e-19  Score=213.27  Aligned_cols=247  Identities=26%  Similarity=0.368  Sum_probs=193.0

Q ss_pred             CCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEEC
Q 035852          560 QLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRL  639 (960)
Q Consensus       560 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  639 (960)
                      +.+.|+++++.++......+..++.|++++|+++. +|...      .++|+.|++++|+++ .+|..+.  .+|+.|+|
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            35677777777775433356789999999999884 44332      257999999999988 4676554  47999999


Q ss_pred             CCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccc
Q 035852          640 DNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG  719 (960)
Q Consensus       640 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~  719 (960)
                      ++|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++.
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc
Confidence            999998 7787664  58999999999998 5787664  58999999999998 5776543   478999999999985


Q ss_pred             cCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccch
Q 035852          720 VFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTL  799 (960)
Q Consensus       720 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (960)
                       +|..+  .++|+.|++++|.+++ +|..+.                                                 
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-------------------------------------------------  345 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALTS-LPASLP-------------------------------------------------  345 (754)
T ss_pred             -CCccc--cccceeccccCCcccc-CChhhc-------------------------------------------------
Confidence             55544  3689999999999874 554321                                                 


Q ss_pred             hhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCC----C
Q 035852          800 TFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT----V  875 (960)
Q Consensus       800 ~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l----~  875 (960)
                            ++|+.|+|++|+|+ .+|..+.  +.|+.|+|++|+++ .+|+.+..  .|+.||+++|+++ .+|..+    .
T Consensus       346 ------~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~  412 (754)
T PRK15370        346 ------PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA--ALQIMQASRNNLV-RLPESLPHFRG  412 (754)
T ss_pred             ------CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH--HHHHHhhccCCcc-cCchhHHHHhh
Confidence                  23589999999998 6887664  68999999999999 57877753  6999999999998 666654    4


Q ss_pred             CCCCCCEEEcccCccee
Q 035852          876 NLVFLSHFNISYNNLSG  892 (960)
Q Consensus       876 ~l~~L~~l~ls~N~l~g  892 (960)
                      .++.+..+++.+|+++.
T Consensus       413 ~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        413 EGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             cCCCccEEEeeCCCccH
Confidence            45788999999999873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=5.8e-18  Score=186.43  Aligned_cols=59  Identities=22%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCC----chhhhcCCCCCcEEeCCCCCCC
Q 035852          116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGM----IPNQIGNLSNLQYLNLRPNYLG  174 (960)
Q Consensus       116 ~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~i~  174 (960)
                      .|+|..+.+++...+..+..+.+|++|+++++.++..    ++..+...++|++|+++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence            3566666666544556666667777777777776432    4455566666777777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=6.8e-18  Score=185.86  Aligned_cols=60  Identities=28%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             EEeCCCCccc-CCchhhhcCCCCCcEEeCCCCCCCCCccCCcc-cccCCCccceeecCCCCC
Q 035852          141 FLDLSGAGFV-GMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLYDLSLLENLDLSGVDL  200 (960)
Q Consensus       141 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l  200 (960)
                      .|+|..+.+. ...+..+..+.+|++|+++++.++......+. .+...+.+++++++++.+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            4666666666 33445556666677777777765432222222 233344455555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.4e-18  Score=157.34  Aligned_cols=184  Identities=27%  Similarity=0.497  Sum_probs=134.0

Q ss_pred             CCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCC
Q 035852          653 GALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK  732 (960)
Q Consensus       653 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  732 (960)
                      ..+.+.+.|.|++|+++ .+|+.+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence            34556666777777776 66667777777777777777777 6777776 6777888888777776 6788888888888


Q ss_pred             eEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEE
Q 035852          733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID  812 (960)
Q Consensus       733 ~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  812 (960)
                      .||+.+|+++..                             ..||.|+.                       ++.|..|+
T Consensus       106 vldltynnl~e~-----------------------------~lpgnff~-----------------------m~tlraly  133 (264)
T KOG0617|consen  106 VLDLTYNNLNEN-----------------------------SLPGNFFY-----------------------MTTLRALY  133 (264)
T ss_pred             hhhccccccccc-----------------------------cCCcchhH-----------------------HHHHHHHH
Confidence            888888887521                             12233221                       12346788


Q ss_pred             ccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCC---CEEEcccCc
Q 035852          813 LSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFL---SHFNISYNN  889 (960)
Q Consensus       813 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L---~~l~ls~N~  889 (960)
                      |+.|.|. .+|.++++|++|+.|.+..|.+- ++|.+++.++.|+.|.+-+|+++ .+|.+++++.-.   +++.+..|.
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP  210 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP  210 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence            8888887 88888999999999999988887 68889999999999999999988 778777776432   344556666


Q ss_pred             ceecCC
Q 035852          890 LSGEVP  895 (960)
Q Consensus       890 l~g~iP  895 (960)
                      ...+|-
T Consensus       211 wv~pIa  216 (264)
T KOG0617|consen  211 WVNPIA  216 (264)
T ss_pred             CCChHH
Confidence            655443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=3.4e-18  Score=154.88  Aligned_cols=183  Identities=25%  Similarity=0.464  Sum_probs=97.7

Q ss_pred             CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccccee
Q 035852          631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIIL  710 (960)
Q Consensus       631 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L  710 (960)
                      +..++.|.|++|+++ .+|..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. .+|..++ .+|.|++|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence            344444455555554 44444455555555555555554 44555555555555555555554 4454444 45555555


Q ss_pred             eecccccc-ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852          711 ILRSNKFH-GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE  789 (960)
Q Consensus       711 ~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (960)
                      ++.+|++. ..+|..|..++.|+-|++++|.|. .+|..+++++.+                                  
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l----------------------------------  152 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL----------------------------------  152 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------------------------------
Confidence            55555443 334545555555555555555554 445444444433                                  


Q ss_pred             eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCC---CCEEECcCCcc
Q 035852          790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL---LESLDFSSNRL  866 (960)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~---L~~L~Ls~N~l  866 (960)
                                         +.|.+..|.+- .+|.+++.|+.|+.|.+.+|+++ .+|++++++.-   =+.+.+.+|..
T Consensus       153 -------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  153 -------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             -------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence                               44555555555 66777777777777777777776 56666665532   23445566666


Q ss_pred             cccCCCC
Q 035852          867 EGEIPKN  873 (960)
Q Consensus       867 ~g~iP~~  873 (960)
                      ...|.++
T Consensus       212 v~pIaeQ  218 (264)
T KOG0617|consen  212 VNPIAEQ  218 (264)
T ss_pred             CChHHHH
Confidence            5555544

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=5.1e-14  Score=166.22  Aligned_cols=117  Identities=35%  Similarity=0.557  Sum_probs=106.0

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      ++.|+|++|.++|.+|.+++++++|+.|+|++|.++|.+|+.++.+++|+.|||++|+++|.+|+.++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCCCcc--cCCCCccccCCCCCccCccccCCcC
Q 035852          888 NNLSGEVPDEAQ--FATFDSSSYIGDEYLCGPVLKKLCT  924 (960)
Q Consensus       888 N~l~g~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~  924 (960)
                      |+++|.+|....  +.......+.||+++||.|..+.|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999998522  2233455689999999987556785

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=3.1e-13  Score=159.63  Aligned_cols=132  Identities=36%  Similarity=0.532  Sum_probs=113.9

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeeCC--CC--CceEEEeCCCCCCcCCCcccccccccc
Q 035852           30 GCVESEREALLSFKQDLEDPSNRLATWIGDGDCC----KWAGVICDN--FT--GHVLELHLGNPWEDDHGHQAKESSALV  101 (960)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~  101 (960)
                      .+.++|.+||+++|+++.++..  .+|.+ ..||    .|.||.|..  ..  .+|+.|+|+++             .+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------------~L~  431 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------------GLR  431 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCC-------------Ccc
Confidence            4567899999999999876542  48987 4553    799999953  22  25999999986             889


Q ss_pred             cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCcc
Q 035852          102 GKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYV  178 (960)
Q Consensus       102 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~  178 (960)
                      |.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|++.+.+|..++++++|++|++++|.++...+
T Consensus       432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence            99999999999999999999999985 99999999999999999999999999999999999999999998775433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=2e-14  Score=154.29  Aligned_cols=113  Identities=27%  Similarity=0.438  Sum_probs=58.3

Q ss_pred             cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852          635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS  714 (960)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~  714 (960)
                      ...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..+.  .--|+.|.+++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEec
Confidence            34455555554 45555555555555555555554 45555555555555555555555 4555544  22355555555


Q ss_pred             ccccccCchhhcCCCCCCeEeecCCcCccccCcccccccc
Q 035852          715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTA  754 (960)
Q Consensus       715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  754 (960)
                      |+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s  190 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS  190 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH
Confidence            5555 44555555555555555555554 34444444333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=1.3e-13  Score=148.22  Aligned_cols=195  Identities=27%  Similarity=0.407  Sum_probs=152.4

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      ++.-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|++|+|+.|+++ .+|..+..|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344455677888877 67777788888888888888887 78888888888888888888888 7777777664 88888


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      +++|+++ .+|..++ ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|.++..++             
T Consensus       150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            8888887 7888887 7888888888888887 67778888888998888888886 5565554322             


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI  846 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  846 (960)
                                                               |..||+|+|+++ .||.+|.+|+.|++|-|.+|.+. ..
T Consensus       213 -----------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP  249 (722)
T KOG0532|consen  213 -----------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP  249 (722)
T ss_pred             -----------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence                                                     367899999988 88999999999999999999887 56


Q ss_pred             chhh---ccCCCCCEEECcCCc
Q 035852          847 PENI---GAMALLESLDFSSNR  865 (960)
Q Consensus       847 P~~l---~~l~~L~~L~Ls~N~  865 (960)
                      |..|   |...--+.|+.--++
T Consensus       250 PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  250 PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hHHHHhccceeeeeeecchhcc
Confidence            7666   344445566666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=5.4e-12  Score=142.94  Aligned_cols=200  Identities=32%  Similarity=0.512  Sum_probs=127.8

Q ss_pred             EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCC-CCcEEECCCCeecccCCcCCcCCCCCcEEecCCC
Q 035852          612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS-LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN  690 (960)
Q Consensus       612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  690 (960)
                      .+++..|.+...+. .+...+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666643332 3344467778888888777 5666666664 7888888888777 56666777777888888888


Q ss_pred             cccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCC
Q 035852          691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYP  770 (960)
Q Consensus       691 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~  770 (960)
                      +++ .+|.... ..+.|+.|++++|++. .+|........|+.+++++|+.. .++..+.+++.                
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~----------------  233 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN----------------  233 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence            777 5665553 4677777777777777 45555445555777777777522 22323322222                


Q ss_pred             CCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhh
Q 035852          771 SDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI  850 (960)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l  850 (960)
                                                           +..+.+++|++. .+|..++.++.++.|++++|+++ .++. +
T Consensus       234 -------------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~  273 (394)
T COG4886         234 -------------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-L  273 (394)
T ss_pred             -------------------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-c
Confidence                                                 245556666665 44666777777777777777776 3443 6


Q ss_pred             ccCCCCCEEECcCCcccccCCCCC
Q 035852          851 GAMALLESLDFSSNRLEGEIPKNT  874 (960)
Q Consensus       851 ~~l~~L~~L~Ls~N~l~g~iP~~l  874 (960)
                      +.+..++.||+++|.++..+|...
T Consensus       274 ~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         274 GSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccCccCEEeccCccccccchhhh
Confidence            777777777777777776655543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=8.3e-12  Score=141.42  Aligned_cols=198  Identities=32%  Similarity=0.507  Sum_probs=107.5

Q ss_pred             EEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCC-CCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852          636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCT-ELETIDIGENEFSGNVPAWIGERFPRMIILILRS  714 (960)
Q Consensus       636 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~  714 (960)
                      .++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+. .++.|+.|++++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence            4555555553222 22334455666666666665 4454444443 6666666666665 4544444 566666666666


Q ss_pred             ccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEe
Q 035852          715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL  794 (960)
Q Consensus       715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (960)
                      |+++ .+|...+..+.|+.|++++|+++ .+|..+...                                          
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~------------------------------------------  208 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL------------------------------------------  208 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh------------------------------------------
Confidence            6665 33433335566666666666654 333322111                                          


Q ss_pred             cccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCC
Q 035852          795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT  874 (960)
Q Consensus       795 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l  874 (960)
                                 ..|+++++++|+.. .+|..+.+++.+..+.+++|++.. +|..++.++.++.|++++|.++ .++. +
T Consensus       209 -----------~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~  273 (394)
T COG4886         209 -----------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-L  273 (394)
T ss_pred             -----------hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-cccc-c
Confidence                       11355566666433 455556666666666666666552 3555666666666666666665 3333 5


Q ss_pred             CCCCCCCEEEcccCcceecCCC
Q 035852          875 VNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       875 ~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      +.+..++.|++++|.++...|.
T Consensus       274 ~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         274 GSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccCccCEEeccCccccccchh
Confidence            5666666666666666554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-11  Score=126.31  Aligned_cols=255  Identities=25%  Similarity=0.304  Sum_probs=150.1

Q ss_pred             ccccCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCCCCc---ccCCchh-------hhcCCCCCcEEeCCCCC
Q 035852          106 PALLDFEHLIYLNLSYNDFKGI---QIPRFLGSMGNLRFLDLSGAG---FVGMIPN-------QIGNLSNLQYLNLRPNY  172 (960)
Q Consensus       106 ~~l~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~L~~n~  172 (960)
                      +.+..+..+++++||+|.|...   .+...+.+.++|+..++|+--   ....+|.       ++-.+++|++||||.|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4455667777777777776432   133445566777777777532   2223443       33455677777777776


Q ss_pred             CCCCccCCcc-cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCC
Q 035852          173 LGGLYVEDLG-WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFD  251 (960)
Q Consensus       173 i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  251 (960)
                      +..-....+. .++++..|++|+|.+|.+.......  ++  +.|..|.  .       ....+.-+.|+++...+|++.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~--~al~~l~--~-------~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LG--RALFELA--V-------NKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HH--HHHHHHH--H-------HhccCCCcceEEEEeeccccc
Confidence            6544444333 4556666777776666655431100  00  0011111  0       112334456777777777765


Q ss_pred             CC---hhHHhhcCCCCCCEEeccCcccCCC----CcccccCCCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEeeeC
Q 035852          252 NS---LIATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFSYL----IPEWLNKFSRLEYLSLSS  320 (960)
Q Consensus       252 ~~---~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~  320 (960)
                      ++   .+...+...+.|+.+.++.|.|...    +...+..+++|++|||..|.++..    +...+..+++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            32   2345566677788888887776532    234566788888888888877643    234456677888888888


Q ss_pred             ccccccccHHH----HhcCCCCCEEeCCCCCCCcc----cccccccCCCCCEEEcCCcccC
Q 035852          321 NRLQGRISSVL----LENLSSIQSLDLSFNELEWK----IPRSFSRFCNLRSISLSGIQLS  373 (960)
Q Consensus       321 n~l~~~i~~~~----l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  373 (960)
                      |.+...-....    -...++|++|.+.+|.++..    +.......+.|+.|++++|++.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            87764332111    13467888888888877532    2223455788888888888884

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=1.9e-11  Score=124.68  Aligned_cols=190  Identities=21%  Similarity=0.264  Sum_probs=108.4

Q ss_pred             CCCCCcEEeCCCCCCCCCh---hHHhhcCCCCCCEEeccCcccCCCC-------------cccccCCCCCCEEeCCCCcC
Q 035852          236 NFSSLVTLDLSHNQFDNSL---IATQLYGLCNLVFLDLSDNNFQGPI-------------PDTIQNWTSLRHLDLSSNHF  299 (960)
Q Consensus       236 ~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~n~l  299 (960)
                      .+++|++||||.|.+....   +-+.+..+..|++|.|.+|.+...-             ....+.-+.|+++..++|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            3344455555555443211   1223445566666666666554211             11223456788888888877


Q ss_pred             CCc----chhhhcCCCCCCEEeeeCcccccc---ccHHHHhcCCCCCEEeCCCCCCCc----ccccccccCCCCCEEEcC
Q 035852          300 SYL----IPEWLNKFSRLEYLSLSSNRLQGR---ISSVLLENLSSIQSLDLSFNELEW----KIPRSFSRFCNLRSISLS  368 (960)
Q Consensus       300 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~---i~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~  368 (960)
                      ...    +...|...+.|+.+.+..|.+...   .-...+..+++|+.|||.+|-++.    .+...+..+++|+.++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            543    234456667888888888877522   122456778888888888887753    233455667778888888


Q ss_pred             CcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCC----chhhhhcCCCCCCEEecCCCcC
Q 035852          369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG----SLTNQIGKFKVLNSVDLSENSI  426 (960)
Q Consensus       369 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l  426 (960)
                      +|.+...+...+...+... .+.|+.|.+.+|.++.    .+...+...+.|..|+|++|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            8887777777666665544 4556666666665542    1222233344444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.2e-11  Score=127.48  Aligned_cols=165  Identities=25%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCch--hhhcCCCCCcEEeCCCCCCCCCccCCcccccC
Q 035852          109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIP--NQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYD  186 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  186 (960)
                      .+++.||...|.++.+.....-.....|++++.||||.|-+...-|  .-..++++|+.|+++.|.+..-......  ..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--LL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch--hh
Confidence            5667777777777766542222456677777777777776554322  3345677777777777765432211111  13


Q ss_pred             CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCC
Q 035852          187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV  266 (960)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  266 (960)
                      +++|+.|.+++|.++. .........+|+|+.|+|..|...........-+..|+.|||++|.+-+...-...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            4555566666665552 222233344555555555555422222222333444555555555443211112334444444


Q ss_pred             EEeccCcccC
Q 035852          267 FLDLSDNNFQ  276 (960)
Q Consensus       267 ~L~Ls~n~l~  276 (960)
                      .|+++.|++.
T Consensus       275 ~Lnls~tgi~  284 (505)
T KOG3207|consen  275 QLNLSSTGIA  284 (505)
T ss_pred             hhhccccCcc
Confidence            4444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.4e-11  Score=127.19  Aligned_cols=214  Identities=21%  Similarity=0.175  Sum_probs=133.9

Q ss_pred             hcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCc-c
Q 035852          157 IGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV-A  235 (960)
Q Consensus       157 l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~  235 (960)
                      =+++++||...|.++.+......  +....|++++.|||+.|-+............+++|+.|+++.|++........ .
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            35566666666666655433222  34456667777777777666665556666777888888888887665443222 3


Q ss_pred             CCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcc-hhhhcCCCCCC
Q 035852          236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLI-PEWLNKFSRLE  314 (960)
Q Consensus       236 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~  314 (960)
                      .+++|+.|.++.|.++...+...+..+++|+.|+|..|...........-+..|+.|||++|.+...- -...+.++.|+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            56778888888888874445555667788888888888533333344456778888888888776531 13456778888


Q ss_pred             EEeeeCccccccccHH------HHhcCCCCCEEeCCCCCCCc-ccccccccCCCCCEEEcCCcccC
Q 035852          315 YLSLSSNRLQGRISSV------LLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSGIQLS  373 (960)
Q Consensus       315 ~L~L~~n~l~~~i~~~------~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~  373 (960)
                      .|+++.+.+. .+...      ....+++|++|++..|++.. ..-..+..+++|+.|.+..|.+.
T Consensus       275 ~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  275 QLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8888888776 22111      12456788888888887741 11223444556666655555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.7e-09  Score=104.36  Aligned_cols=84  Identities=29%  Similarity=0.337  Sum_probs=20.6

Q ss_pred             CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhh-cCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWL-NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL  341 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  341 (960)
                      .+|+.|++++|.++..  +.+..+++|++|++++|+++...+ .+ ..+++|++|++++|++..--....+..+++|++|
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            3444444444444321  123334444444444444443211 12 2344444444444444321111233444555555


Q ss_pred             eCCCCCCC
Q 035852          342 DLSFNELE  349 (960)
Q Consensus       342 ~Ls~n~l~  349 (960)
                      ++.+|++.
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=5.8e-10  Score=110.89  Aligned_cols=87  Identities=30%  Similarity=0.333  Sum_probs=56.3

Q ss_pred             hhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCC
Q 035852          258 QLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS  337 (960)
Q Consensus       258 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~  337 (960)
                      .+..++.|+++||++|.|+ .+.+++.-.+.++.|++++|.+...  ..++.+++|+.|||++|.++ .+. .+-..+.+
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGN  353 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGN  353 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhh-hhHhhhcC
Confidence            3444566777777777766 4556666667777777777776643  33666777777777777766 343 45556667


Q ss_pred             CCEEeCCCCCCC
Q 035852          338 IQSLDLSFNELE  349 (960)
Q Consensus       338 L~~L~Ls~n~l~  349 (960)
                      +++|.|+.|.+.
T Consensus       354 IKtL~La~N~iE  365 (490)
T KOG1259|consen  354 IKTLKLAQNKIE  365 (490)
T ss_pred             EeeeehhhhhHh
Confidence            777777777664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=5.4e-10  Score=111.11  Aligned_cols=129  Identities=28%  Similarity=0.328  Sum_probs=70.1

Q ss_pred             CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852          238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS  317 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  317 (960)
                      +.|++|||++|.++  .+.++..-.+.++.|+++.|++...  ..+..+++|++|||++|.++.. ..|-.++-+++.|.
T Consensus       284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh--hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence            34555666666553  3444555556666666666665522  2255566666666666655532 33344555666666


Q ss_pred             eeCccccccccHHHHhcCCCCCEEeCCCCCCCcc-cccccccCCCCCEEEcCCcccCC
Q 035852          318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK-IPRSFSRFCNLRSISLSGIQLSH  374 (960)
Q Consensus       318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~  374 (960)
                      |+.|.+. .+  ..+..+-+|..||+++|++... -...++++|.|+++.|.+|.+..
T Consensus       359 La~N~iE-~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIE-TL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHh-hh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            6666654 22  2344555566666666665421 12345666666666666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.85  E-value=3.8e-09  Score=101.91  Aligned_cols=84  Identities=33%  Similarity=0.397  Sum_probs=25.7

Q ss_pred             cCCCCCCEEeccCcccCCCCcccc-cCCCCCCEEeCCCCcCCCcc-hhhhcCCCCCCEEeeeCccccccc--cHHHHhcC
Q 035852          260 YGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHLDLSSNHFSYLI-PEWLNKFSRLEYLSLSSNRLQGRI--SSVLLENL  335 (960)
Q Consensus       260 ~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i--~~~~l~~l  335 (960)
                      ..+++|++|++++|+++. +.+.+ ..+++|++|++++|++...- -..+..+++|+.|++.+|.++..-  ....+..+
T Consensus        61 ~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   61 PGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             ---TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             cChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence            334444444444444442 22222 23444444444444443211 123445555555555555554221  11335566


Q ss_pred             CCCCEEeCC
Q 035852          336 SSIQSLDLS  344 (960)
Q Consensus       336 ~~L~~L~Ls  344 (960)
                      |+|+.||-.
T Consensus       140 P~Lk~LD~~  148 (175)
T PF14580_consen  140 PSLKVLDGQ  148 (175)
T ss_dssp             TT-SEETTE
T ss_pred             ChhheeCCE
Confidence            777776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=2.8e-09  Score=128.56  Aligned_cols=104  Identities=28%  Similarity=0.285  Sum_probs=50.5

Q ss_pred             CCCEEEccCCc--CCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEE
Q 035852          215 SLLVLQLAGCQ--LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL  292 (960)
Q Consensus       215 ~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  292 (960)
                      .|++|-+.+|.  +.......|..++.|++|||++|.-- +.+|..++.+-+||+|++++..+. .+|..++++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            45555555553  33333334445555555555544332 345555555555555555555554 445555555555555


Q ss_pred             eCCCCcCCCcchhhhcCCCCCCEEeeeC
Q 035852          293 DLSSNHFSYLIPEWLNKFSRLEYLSLSS  320 (960)
Q Consensus       293 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  320 (960)
                      ++..+.....+|.....+++|++|.+..
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeec
Confidence            5554443333344344455555555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.77  E-value=8.2e-09  Score=74.47  Aligned_cols=39  Identities=49%  Similarity=1.051  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceeeC
Q 035852           33 ESEREALLSFKQDLE-DPSNRLATWIGD--GDCCKWAGVICD   71 (960)
Q Consensus        33 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~   71 (960)
                      ++|++||++||+++. +|.+.+.+|..+  ++||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 577889999864  699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.72  E-value=9.2e-09  Score=124.21  Aligned_cols=61  Identities=36%  Similarity=0.517  Sum_probs=31.7

Q ss_pred             CCCEEeCCCCC--CCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCC
Q 035852          113 HLIYLNLSYND--FKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLG  174 (960)
Q Consensus       113 ~L~~L~Ls~n~--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~  174 (960)
                      .|+.|-+.+|.  +..+ .++++..++.|++|||++|.-.+.+|.+|+.|.+||+|+++++.+.
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~  608 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS  608 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence            45555555553  2221 2334555555566666555545555555555555555555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.6e-10  Score=111.73  Aligned_cols=160  Identities=27%  Similarity=0.230  Sum_probs=95.4

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc-cccCCCccc
Q 035852          113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLYDLSLLE  191 (960)
Q Consensus       113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~l~~L~  191 (960)
                      .|++||||...++...+...+..|.+|+-|.|.++++.+.+...+++-.+|+.|+++.+.  ++...... .+.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhHh
Confidence            588999999888765566778889999999999999998888889999999999998774  22222222 356777777


Q ss_pred             eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCC--C-CCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852          192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLS--H-FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL  268 (960)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  268 (960)
                      +|++++|.+.....-...-.--++|+.|+++++.-.  . ....--..+++|.+|||++|.--.......+.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            777777766553211111111245556666655311  0 0001113445555555554422112333344445555555


Q ss_pred             eccCcc
Q 035852          269 DLSDNN  274 (960)
Q Consensus       269 ~Ls~n~  274 (960)
                      .++.|.
T Consensus       344 SlsRCY  349 (419)
T KOG2120|consen  344 SLSRCY  349 (419)
T ss_pred             ehhhhc
Confidence            555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=1.8e-09  Score=122.39  Aligned_cols=219  Identities=33%  Similarity=0.357  Sum_probs=133.3

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852          109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS  188 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~  188 (960)
                      ..+..++.+++..|.+..  +-..++.+++|++|++.+|++... ...+..+++|++|++++|.|+.+     ..+..++
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-----~~l~~l~  140 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-----EGLSTLT  140 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc-----cchhhcc
Confidence            356667777777777763  344577788888888888887653 22267788888888888877644     3355666


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC-CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF  267 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  267 (960)
                      .|+.|++++|.++.+..    +..++.|+.+++++|++..+.+ . ...+.+++.+++.+|.+.   ....+..+..+..
T Consensus       141 ~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~---~i~~~~~~~~l~~  212 (414)
T KOG0531|consen  141 LLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR---EIEGLDLLKKLVL  212 (414)
T ss_pred             chhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh---cccchHHHHHHHH
Confidence            68888888887777543    2336677777777777766655 3 456667777777777664   2223333444444


Q ss_pred             EeccCcccCCCCcccccCCC--CCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCC
Q 035852          268 LDLSDNNFQGPIPDTIQNWT--SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSF  345 (960)
Q Consensus       268 L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~  345 (960)
                      +++..|.++..-+  +..+.  +|+.+++++|.+... +..+..+..+..|++.+|++...   ..+...+.+..+....
T Consensus       213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLND  286 (414)
T ss_pred             hhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc---ccccccchHHHhccCc
Confidence            4666666653211  22222  266777777766542 24455666666777766666522   2233444555555555


Q ss_pred             CCCC
Q 035852          346 NELE  349 (960)
Q Consensus       346 n~l~  349 (960)
                      +.+.
T Consensus       287 ~~~~  290 (414)
T KOG0531|consen  287 NKLA  290 (414)
T ss_pred             chhc
Confidence            5543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=1.7e-08  Score=79.82  Aligned_cols=59  Identities=36%  Similarity=0.527  Sum_probs=33.0

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL  866 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  866 (960)
                      |+.|++++|+++...+..|..+++|+.||+++|.++...|..|..+++|+.|++++|++
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45566666666533334555555666666666655555455555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.9e-08  Score=78.57  Aligned_cols=61  Identities=36%  Similarity=0.467  Sum_probs=56.4

Q ss_pred             cccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcc
Q 035852          830 RELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNL  890 (960)
Q Consensus       830 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l  890 (960)
                      ++|+.|++++|+++...+..|..+++|+.||+++|+++...|..+.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999976667899999999999999999988888999999999999999975

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=6.6e-09  Score=117.79  Aligned_cols=216  Identities=30%  Similarity=0.357  Sum_probs=104.8

Q ss_pred             CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852          238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS  317 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  317 (960)
                      ..++.+.+..|.+.  .+...+..+++|+.|++.+|++... ...+..+++|++|++++|.|+...  .+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhh--hhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            34444444444443  1223344555555555555555522 222445556666666666555442  244455566666


Q ss_pred             eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccc-cccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEE
Q 035852          318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIP-RSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD  396 (960)
Q Consensus       318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~  396 (960)
                      +++|.++ .+  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+...........        +..++
T Consensus       147 l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~--------l~~~~  214 (414)
T KOG0531|consen  147 LSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKK--------LVLLS  214 (414)
T ss_pred             eccCcch-hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHH--------HHHhh
Confidence            6666554 22  223345556666666665553222 1 3455555555666555544332221111        13335


Q ss_pred             cCCCCCCCchhhhhcCCC--CCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCcc
Q 035852          397 LSNTTLSGSLTNQIGKFK--VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS  474 (960)
Q Consensus       397 Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~  474 (960)
                      +..|.++..-+  +..+.  .|+.+++++|.+. .++..+..+..+..+++.+|++...-   .+...+.+..+....+.
T Consensus       215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  215 LLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNK  288 (414)
T ss_pred             cccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc---cccccchHHHhccCcch
Confidence            55555542111  11122  2667777777766 33345566667777777777655221   23344444555555554


Q ss_pred             cc
Q 035852          475 LT  476 (960)
Q Consensus       475 l~  476 (960)
                      +.
T Consensus       289 ~~  290 (414)
T KOG0531|consen  289 LA  290 (414)
T ss_pred             hc
Confidence            43

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.3e-08  Score=99.85  Aligned_cols=178  Identities=25%  Similarity=0.283  Sum_probs=94.8

Q ss_pred             CCCEEeCCCCcCCCc-chhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCC-CCcc-cccccccCCCCCE
Q 035852          288 SLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE-LEWK-IPRSFSRFCNLRS  364 (960)
Q Consensus       288 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~  364 (960)
                      .|++|||+...++.. +-..+..|++|+.|.+.++++.+.|. ..+..-.+|+.|+++.+. ++.. ..--+.+++.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            466666666555422 22234556666666666666665554 455556666666666543 2211 1113455666666


Q ss_pred             EEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCC---CchhhhhcCCCCCCEEecCCCc-CCCCCcccccCCCCC
Q 035852          365 ISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS---GSLTNQIGKFKVLNSVDLSENS-ISGQVPWSLGKLSSL  440 (960)
Q Consensus       365 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L  440 (960)
                      |+++.|.+....+..+....    .+.|+.|+++++.-.   ..+..-..++++|.+|||++|. ++...-..|.+++.|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             cCchHhhccchhhhHHHhhh----chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            66666665544443333322    234566666665321   1222334567788888887764 333334455667777


Q ss_pred             cEEecCCcccccccchh--hhcCCCCCcEeeccC
Q 035852          441 RYLDISNNQLNGTVSEI--HFANLSSLTFFYASR  472 (960)
Q Consensus       441 ~~L~L~~n~l~~~i~~~--~~~~l~~L~~L~l~~  472 (960)
                      ++|.++.|..  .+|..  .+...|+|.+|++.+
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            7777777753  23321  234455555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.41  E-value=7.9e-08  Score=94.84  Aligned_cols=227  Identities=21%  Similarity=0.179  Sum_probs=128.3

Q ss_pred             cCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCCCCcc---cCCch-------hhhcCCCCCcEEeCCCCCCCC
Q 035852          109 LDFEHLIYLNLSYNDFKGI---QIPRFLGSMGNLRFLDLSGAGF---VGMIP-------NQIGNLSNLQYLNLRPNYLGG  175 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~i~~  175 (960)
                      ..+..++.+|||+|.|...   .+...|.+-++|++.+++.-..   ...++       .++-+|++|+..+||.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3466777777777777542   1334455567777777765321   11222       344567777777777776655


Q ss_pred             CccCCcc-cccCCCccceeecCCCCCCCCCC--CcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC
Q 035852          176 LYVEDLG-WLYDLSLLENLDLSGVDLSKVSN--GPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN  252 (960)
Q Consensus       176 l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  252 (960)
                      ..++.+. .+++-+.|++|.+++|.+..+..  +...+..+        ..       ....++-+.|++.....|++..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~-------nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AY-------NKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HH-------HhhhccCCCceEEEeccchhcc
Confidence            4444333 44555556666666555443311  00000000        00       0123345677777777777754


Q ss_pred             Chh---HHhhcCCCCCCEEeccCcccCCCC-----cccccCCCCCCEEeCCCCcCCCcc----hhhhcCCCCCCEEeeeC
Q 035852          253 SLI---ATQLYGLCNLVFLDLSDNNFQGPI-----PDTIQNWTSLRHLDLSSNHFSYLI----PEWLNKFSRLEYLSLSS  320 (960)
Q Consensus       253 ~~~---~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~  320 (960)
                      +..   ...+....+|+++.+..|.|...-     -..+..+.+|++||+..|.++-.-    ...+...+.|+.|.+.+
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            322   223444468888888888776331     112346788888888888876432    33445566788888888


Q ss_pred             ccccccccHHHHh-----cCCCCCEEeCCCCCCCc
Q 035852          321 NRLQGRISSVLLE-----NLSSIQSLDLSFNELEW  350 (960)
Q Consensus       321 n~l~~~i~~~~l~-----~l~~L~~L~Ls~n~l~~  350 (960)
                      |-++..-....+.     ..++|+.|...+|...+
T Consensus       252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            8777544322222     34677777777776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.41  E-value=9.2e-08  Score=94.37  Aligned_cols=169  Identities=20%  Similarity=0.208  Sum_probs=96.9

Q ss_pred             cCCCCCcEEeCCCCCCCC---ChhHHhhcCCCCCCEEeccCcccCCC----Ccc---------cccCCCCCCEEeCCCCc
Q 035852          235 ANFSSLVTLDLSHNQFDN---SLIATQLYGLCNLVFLDLSDNNFQGP----IPD---------TIQNWTSLRHLDLSSNH  298 (960)
Q Consensus       235 ~~l~~L~~L~Ls~n~l~~---~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~---------~l~~l~~L~~L~Ls~n~  298 (960)
                      .+|++|+..+||.|.|..   ..+-+.++.-+.|++|.+++|.+-..    +..         -..+-+.|++.....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            334444444444444431   11223344556666666666654311    111         12345778888888887


Q ss_pred             CCCcch----hhhcCCCCCCEEeeeCcccccc----ccHHHHhcCCCCCEEeCCCCCCCccc----ccccccCCCCCEEE
Q 035852          299 FSYLIP----EWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDLSFNELEWKI----PRSFSRFCNLRSIS  366 (960)
Q Consensus       299 l~~~~p----~~l~~l~~L~~L~L~~n~l~~~----i~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~  366 (960)
                      +.....    ..+..-..|+.+.+..|.+.-.    +....+..+.+|+.|||++|-++..-    ...+...+.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            754321    1223335788888888877632    11123456788888888888776322    23445566788888


Q ss_pred             cCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCC
Q 035852          367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS  403 (960)
Q Consensus       367 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  403 (960)
                      +.+|-++..+...+...+.....++|..|...+|...
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            8888887777777766666555555666655555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=7.1e-08  Score=85.38  Aligned_cols=62  Identities=35%  Similarity=0.539  Sum_probs=37.6

Q ss_pred             cEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC
Q 035852          809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN  873 (960)
Q Consensus       809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~  873 (960)
                      +.|+|++|+++ .+|+++..++.|+.||++.|.+. ..|..+..|.++.+||.-.|... +||..
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            55666666666 56666666666666666666665 44555666666666666666554 44443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=3.6e-07  Score=91.53  Aligned_cols=112  Identities=22%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             CCcEEeCCCCCCCCCccCCcccc-cCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCC
Q 035852          162 NLQYLNLRPNYLGGLYVEDLGWL-YDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSL  240 (960)
Q Consensus       162 ~L~~L~L~~n~i~~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  240 (960)
                      .++.|.+.++.|...  +++..+ +..+.++++||.+|.+++..++...+.++|.|+.|+++.|.+...+...-...++|
T Consensus        46 a~ellvln~~~id~~--gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNE--GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             chhhheecCCCCCcc--hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            444455555544322  122222 35677888888888888887777888889999999999998887665333566788


Q ss_pred             cEEeCCCCCCCCChhHHhhcCCCCCCEEeccCccc
Q 035852          241 VTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF  275 (960)
Q Consensus       241 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l  275 (960)
                      ++|-|.+..+.=......+..++.+++|+++.|.+
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            88888887775233445566778888888887743

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=9.3e-08  Score=106.44  Aligned_cols=109  Identities=33%  Similarity=0.363  Sum_probs=55.9

Q ss_pred             CccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcc-cccCCCCCCEEeCCCCcCCCcchhhhcCCC
Q 035852          233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD-TIQNWTSLRHLDLSSNHFSYLIPEWLNKFS  311 (960)
Q Consensus       233 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  311 (960)
                      ++.-++.|+.|+|++|+++ .  -+.+..+++|++|||+.|.+. .+|. ....+. |+.|.+++|.++..  ..+.++.
T Consensus       182 SLqll~ale~LnLshNk~~-~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk  254 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFT-K--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK  254 (1096)
T ss_pred             HHHHHHHhhhhccchhhhh-h--hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence            3444455556666666554 1  225555566666666666555 2222 122222 56666666655543  2355556


Q ss_pred             CCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852          312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL  348 (960)
Q Consensus       312 ~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l  348 (960)
                      +|+.||+++|-+.+.-....+..+..|++|+|.+|.+
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6666666666555433323344555555566666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=1.6e-06  Score=86.98  Aligned_cols=210  Identities=20%  Similarity=0.197  Sum_probs=128.6

Q ss_pred             CCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCC--chhhhhcCCCCCCEEecCCCcCCCCCcccc-cCC
Q 035852          361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG--SLTNQIGKFKVLNSVDLSENSISGQVPWSL-GKL  437 (960)
Q Consensus       361 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l  437 (960)
                      .++-+.+.++.+...+.......    ..+.++++||.+|.++.  ++...+.++|.|+.|+++.|++...|- .+ ...
T Consensus        46 a~ellvln~~~id~~gd~~~~~~----~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~  120 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGS----SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPL  120 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHH----HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccc
Confidence            33444555555544333222221    12335778888888764  455567789999999999998875443 22 345


Q ss_pred             CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCC---CCCcccccceEEecccccCCC--CCCcccccCcc
Q 035852          438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKAN---PNWVPVFQLEELDLRSCYLGP--PFPSWLHSQNH  512 (960)
Q Consensus       438 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~  512 (960)
                      .+|+.|-|.+..+.-.-....+..+|.++.|.++.|.+.....   ..-...+.++++....|....  .......-+++
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            6788888888766544444467788889999999885443221   111122345555555553210  11111233567


Q ss_pred             CcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccc--cCCCccccCCCCeEEcccCcCcCCC
Q 035852          513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG--EIPNLTEVSQLGTLDLSANNLSGQL  575 (960)
Q Consensus       513 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~Ls~n~l~~~~  575 (960)
                      +..+-+..|++.+.-.+.-+..++.+..|+|+.+++..  .+..+..+++|..|.++++++...+
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            77777888877666555555667777788888888764  3346777788888888888776443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=3.2e-07  Score=81.32  Aligned_cols=102  Identities=23%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             ccEEECCCCccccCCCcCcC---CCCCCcEEECCCCeecccCCcCCcC-CCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852          634 LLVLRLDNNKFTGKLPTSLG---ALSLLRSLHLRNNNLSGTLPVSLGN-CTELETIDIGENEFSGNVPAWIGERFPRMII  709 (960)
Q Consensus       634 L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  709 (960)
                      +..++|++|++. .+++...   ....|+..+|++|.+. .+|..|.. .+.+++|++++|+++ .+|..+. .++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhh
Confidence            445555555553 3333322   2233444455555444 33333322 224444444444444 3444433 3444444


Q ss_pred             eeeccccccccCchhhcCCCCCCeEeecCCc
Q 035852          710 LILRSNKFHGVFPLELCHLAFLKILVLAGNN  740 (960)
Q Consensus       710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  740 (960)
                      |+++.|++. ..|.-+..+.++..||..+|.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            444444444 233333334444444444433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=2.3e-07  Score=103.44  Aligned_cols=180  Identities=31%  Similarity=0.349  Sum_probs=96.5

Q ss_pred             CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC----------------------------CCccCC-
Q 035852          187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP----------------------------LSVANF-  237 (960)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------------~~l~~l-  237 (960)
                      +++++.+.+-...-.+. ..|..+..+++|++|.+.+|.+.....                            ..+.+- 
T Consensus        83 lqkt~~lkl~~~pa~~p-t~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDP-TEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             HhhheeeeecccCCCCC-CCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence            34444444433322222 225667778899999999987754210                            000000 


Q ss_pred             --CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCE
Q 035852          238 --SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEY  315 (960)
Q Consensus       238 --~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  315 (960)
                        -.|...+.++|.+.  .+..++.-++.|+.|+|+.|+++..  +.+..+++|++|||++|.+....--....+ +|+.
T Consensus       162 ~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~  236 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQL  236 (1096)
T ss_pred             hhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hhee
Confidence              12444455555553  3445555566666677777766633  256666667777777766654322122223 2666


Q ss_pred             EeeeCccccccccHHHHhcCCCCCEEeCCCCCCCccc-ccccccCCCCCEEEcCCcccCCc
Q 035852          316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI-PRSFSRFCNLRSISLSGIQLSHQ  375 (960)
Q Consensus       316 L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~  375 (960)
                      |.+++|.++ .+  ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+-..
T Consensus       237 L~lrnN~l~-tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  237 LNLRNNALT-TL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             eeecccHHH-hh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            666666665 22  24566666666777666554311 11234445566666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=3e-05  Score=84.29  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             cCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCC
Q 035852          652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL  731 (960)
Q Consensus       652 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  731 (960)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.++++.-...+|..+   .++|+.|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            344688999999999887 5662   23469999998854444677654   35888999988843334553      46


Q ss_pred             CeEeecCCcC
Q 035852          732 KILVLAGNNL  741 (960)
Q Consensus       732 ~~L~Ls~N~l  741 (960)
                      +.|++++|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=1.1e-06  Score=92.40  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=15.9

Q ss_pred             cCCCCCCCEEeCCCCc-ccCCchhhh-cCCCCCcEEeCCC
Q 035852          133 LGSMGNLRFLDLSGAG-FVGMIPNQI-GNLSNLQYLNLRP  170 (960)
Q Consensus       133 l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~L~~  170 (960)
                      ..+++++++|++.+|. +++..-.++ ..+++|++|++..
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~  199 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS  199 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc
Confidence            3445555555555443 121111222 2345555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.7e-05  Score=57.25  Aligned_cols=35  Identities=31%  Similarity=0.588  Sum_probs=15.2

Q ss_pred             cceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852          832 LRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE  867 (960)
Q Consensus       832 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  867 (960)
                      |+.|++++|+++ .+|+.+++|++|+.||+++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23444444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=1.7e-05  Score=57.18  Aligned_cols=38  Identities=42%  Similarity=0.678  Sum_probs=33.1

Q ss_pred             ccccEEEccCCcccccCchhhhhhcccceeecCcccCcc
Q 035852          806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG  844 (960)
Q Consensus       806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  844 (960)
                      ++|++|++++|+|+ .+|.++++|++|+.||+++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            35799999999999 788889999999999999999983

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.54  E-value=0.00021  Score=77.90  Aligned_cols=138  Identities=17%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCC-CCCCCccCCcccccC
Q 035852          108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN-YLGGLYVEDLGWLYD  186 (960)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~  186 (960)
                      +..+.++++|++++|.++.  +|.   --.+|++|++++|.-...+|..+  ..+|++|++++| .+..++         
T Consensus        48 ~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP---------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP---------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---------
Confidence            4556899999999998875  562   23569999999876656677655  368999999988 544332         


Q ss_pred             CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCcc-CC-CCCcEEeCCCCCCCCChhHHhhcCCCC
Q 035852          187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA-NF-SSLVTLDLSHNQFDNSLIATQLYGLCN  264 (960)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l-~~L~~L~Ls~n~l~~~~~~~~l~~l~~  264 (960)
                       .+|+.|++.++....+..+|.      +|+.|.+.+++....  ..+. .+ ++|++|++++|...  ..|..+.  .+
T Consensus       112 -~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i--~LP~~LP--~S  178 (426)
T PRK15386        112 -ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI--ILPEKLP--ES  178 (426)
T ss_pred             -cccceEEeCCCCCcccccCcc------hHhheeccccccccc--cccccccCCcccEEEecCCCcc--cCccccc--cc
Confidence             458888888777665544443      466777654331110  0111 12 57999999988764  2343332  58


Q ss_pred             CCEEeccCcc
Q 035852          265 LVFLDLSDNN  274 (960)
Q Consensus       265 L~~L~Ls~n~  274 (960)
                      |+.|+++.+.
T Consensus       179 Lk~L~ls~n~  188 (426)
T PRK15386        179 LQSITLHIEQ  188 (426)
T ss_pred             CcEEEecccc
Confidence            9999998763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.50  E-value=0.00016  Score=69.28  Aligned_cols=87  Identities=26%  Similarity=0.269  Sum_probs=55.3

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccc
Q 035852          112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLE  191 (960)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~  191 (960)
                      .....+||++|++...   ..+..++.|.+|.|.+|+++..-|.--.-+++|+.|.|.+|.|..+  +++..+..+++|+
T Consensus        42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--GDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh--hhcchhccCCccc
Confidence            3455677777777532   4456677788888888887766665444466777888877776644  3444455556666


Q ss_pred             eeecCCCCCCCC
Q 035852          192 NLDLSGVDLSKV  203 (960)
Q Consensus       192 ~L~Ls~n~l~~~  203 (960)
                      +|.+-+|.++.-
T Consensus       117 ~Ltll~Npv~~k  128 (233)
T KOG1644|consen  117 YLTLLGNPVEHK  128 (233)
T ss_pred             eeeecCCchhcc
Confidence            666666555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.49  E-value=1.6e-05  Score=84.00  Aligned_cols=230  Identities=20%  Similarity=0.110  Sum_probs=98.5

Q ss_pred             CCCCCcEEeCCCC-CCCCChhHHhhcCCCCCCEEeccCcc-cCCC-CcccccCCCCCCEEeCCCCcCCCcchhhh----c
Q 035852          236 NFSSLVTLDLSHN-QFDNSLIATQLYGLCNLVFLDLSDNN-FQGP-IPDTIQNWTSLRHLDLSSNHFSYLIPEWL----N  308 (960)
Q Consensus       236 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~  308 (960)
                      .+++|++|++..+ .+++..+......+++|++|++++|. +++. +-....++..++.+.+.+|.-.+  .+.+    +
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~  265 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAA  265 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhc
Confidence            3455666666552 33311122233456667777766663 2221 11223344455555555442111  1111    2


Q ss_pred             CCCCCCEEeeeCcccccccc-HHHHhcCCCCCEEeCCCCCCCccc-ccc-cccCCCCCEEEcCCcc-cCCcchhhHHHhh
Q 035852          309 KFSRLEYLSLSSNRLQGRIS-SVLLENLSSIQSLDLSFNELEWKI-PRS-FSRFCNLRSISLSGIQ-LSHQKVSQVLAIF  384 (960)
Q Consensus       309 ~l~~L~~L~L~~n~l~~~i~-~~~l~~l~~L~~L~Ls~n~l~~~~-p~~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~  384 (960)
                      .+..+..+++.+|....... ...-..+..|+.|+.+++...+.. -.. -.+..+|+.+.+.+++ ++...+..+..  
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--  343 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--  343 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--
Confidence            23344455554543221111 112234566777777665432111 111 2345666666666664 33333222221  


Q ss_pred             ccCCCCcccEEEcCCCCCC--CchhhhhcCCCCCCEEecCCCcCCCCC-----cccccCCCCCcEEecCCcccccccchh
Q 035852          385 SGCVSDVLESLDLSNTTLS--GSLTNQIGKFKVLNSVDLSENSISGQV-----PWSLGKLSSLRYLDISNNQLNGTVSEI  457 (960)
Q Consensus       385 ~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~i~~~  457 (960)
                         ....|+.+++..+...  +++...-.+++.|+.+.+++|......     ...-.....|..+.++++.........
T Consensus       344 ---n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  344 ---NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             ---CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence               1233556665555432  122222334666666666665432111     111123345555666665544332222


Q ss_pred             hhcCCCCCcEeeccC
Q 035852          458 HFANLSSLTFFYASR  472 (960)
Q Consensus       458 ~~~~l~~L~~L~l~~  472 (960)
                      .+..+++|+.+++.+
T Consensus       421 ~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  421 HLSICRNLERIELID  435 (483)
T ss_pred             HHhhCcccceeeeec
Confidence            334444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=5.4e-05  Score=89.67  Aligned_cols=149  Identities=25%  Similarity=0.405  Sum_probs=95.2

Q ss_pred             CCCCEEeCCCCcc-cCCchhhhcC-CCCCcEEeCCCCCCCCCccCCc-ccccCCCccceeecCCCCCCCCCCCcccccCC
Q 035852          137 GNLRFLDLSGAGF-VGMIPNQIGN-LSNLQYLNLRPNYLGGLYVEDL-GWLYDLSLLENLDLSGVDLSKVSNGPLVTNAL  213 (960)
Q Consensus       137 ~~L~~L~Ls~n~l-~~~~p~~l~~-l~~L~~L~L~~n~i~~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l  213 (960)
                      .+|++||+++... ...-|..++. +|+|++|.+++-.+..   +++ ..+.++++|..||+|+++++.+    .+++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL----SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc----HHHhcc
Confidence            6677888877543 2233445554 6888888877654332   122 2456778888888888887775    567788


Q ss_pred             CCCCEEEccCCcCCCC-CCCCccCCCCCcEEeCCCCCCCCCh-hH----HhhcCCCCCCEEeccCcccCCCCcccc-cCC
Q 035852          214 RSLLVLQLAGCQLSHF-PPLSVANFSSLVTLDLSHNQFDNSL-IA----TQLYGLCNLVFLDLSDNNFQGPIPDTI-QNW  286 (960)
Q Consensus       214 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~-~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l  286 (960)
                      ++|++|.+.+-.+... .-..+.++++|++||+|..+..... +.    +.-..+++|+.||.|+..+.+.+-+.+ ..-
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            8888888877766652 2245678899999999987654222 11    222357899999999887775543332 233


Q ss_pred             CCCCEE
Q 035852          287 TSLRHL  292 (960)
Q Consensus       287 ~~L~~L  292 (960)
                      ++|+.+
T Consensus       275 ~~L~~i  280 (699)
T KOG3665|consen  275 PNLQQI  280 (699)
T ss_pred             ccHhhh
Confidence            444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=0.00011  Score=87.23  Aligned_cols=135  Identities=21%  Similarity=0.254  Sum_probs=80.3

Q ss_pred             CCCcEEeCCCCCCCCChhHHhhc-CCCCCCEEeccCcccCCC-CcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCE
Q 035852          238 SSLVTLDLSHNQFDNSLIATQLY-GLCNLVFLDLSDNNFQGP-IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEY  315 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  315 (960)
                      .+|++||+++...-....+..++ .+|.|+.|.+++-.+... +-....++++|..||+|+++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666665433244455554 367788887777665422 233445677788888888777754  56777778887


Q ss_pred             EeeeCccccccccHHHHhcCCCCCEEeCCCCCCCccc--cc----ccccCCCCCEEEcCCcccCC
Q 035852          316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI--PR----SFSRFCNLRSISLSGIQLSH  374 (960)
Q Consensus       316 L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~--p~----~l~~l~~L~~L~L~~n~l~~  374 (960)
                      |.+.+-.+...-....+.++++|+.||+|........  ..    .-..+|+||.||.++..+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7777766653222245667788888888776543211  11    11235566555555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00029  Score=67.50  Aligned_cols=108  Identities=21%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD  342 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  342 (960)
                      .+...+||++|.+...  ..|..++.|..|.+++|+|+..-|.--.-+++|+.|.+.+|.+..-.....+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566677777766522  34566777788888888877765554455677888888888776322223466788888888


Q ss_pred             CCCCCCCccc---ccccccCCCCCEEEcCCccc
Q 035852          343 LSFNELEWKI---PRSFSRFCNLRSISLSGIQL  372 (960)
Q Consensus       343 Ls~n~l~~~~---p~~l~~l~~L~~L~L~~n~l  372 (960)
                      +-+|+.+..-   -..+..+++|+.||+.+...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            8888765321   12456778888888776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.27  E-value=0.00012  Score=73.26  Aligned_cols=117  Identities=24%  Similarity=0.240  Sum_probs=77.5

Q ss_pred             ccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC--cccCCchhhhcCCCCCcEEeCCCCCCCCCcc
Q 035852          101 VGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGA--GFVGMIPNQIGNLSNLQYLNLRPNYLGGLYV  178 (960)
Q Consensus       101 ~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~  178 (960)
                      .|.+....-.+..|+.|++.+..++..   ..+-.+++|++|.+|.|  ++.+.++.-...+++|++|++++|+|..  .
T Consensus        32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--l  106 (260)
T KOG2739|consen   32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--L  106 (260)
T ss_pred             CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--c
Confidence            344555555666777777777666543   34456789999999999  6666676666777999999999998875  3


Q ss_pred             CCcccccCCCccceeecCCCCCCCCCCC-cccccCCCCCCEEEcc
Q 035852          179 EDLGWLYDLSLLENLDLSGVDLSKVSNG-PLVTNALRSLLVLQLA  222 (960)
Q Consensus       179 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~l~~L~~L~L~  222 (960)
                      ..+..+..+.+|..|++..|..+..... ...+..+++|++|+-.
T Consensus       107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            5556667777777778777766654221 1233344555555433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.68  E-value=0.0027  Score=58.96  Aligned_cols=58  Identities=12%  Similarity=0.185  Sum_probs=19.8

Q ss_pred             cCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852          211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       211 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls  271 (960)
                      ..+++|+.+.+.. .+..+....|.++++|+.+++..+ +. ......+.++++|+.+.+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence            3444444444442 344444444555545555555443 22 2222333444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.66  E-value=0.0026  Score=59.07  Aligned_cols=124  Identities=13%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             CCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCC
Q 035852          231 PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF  310 (960)
Q Consensus       231 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  310 (960)
                      ...|.++++|+.+.+.. .+. ......|.++++|+.+++..+ +...-...|.++++++.+.+.. .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            45788888899998875 454 444566778888998888775 5544556677887888888865 4444445567778


Q ss_pred             CCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCC
Q 035852          311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNL  362 (960)
Q Consensus       311 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  362 (960)
                      ++|+.+++..+ +. .++...+.++ +|+.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            88888888665 43 4554667776 888888775 3443444566666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.00012  Score=73.13  Aligned_cols=102  Identities=25%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             CCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCE
Q 035852          261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS  340 (960)
Q Consensus       261 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~  340 (960)
                      .+.+.+.|++-+|.+..+  ....+|+.|++|.|+-|+|+..-|  +..|++|++|+|..|.|...-....+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            356777888888888743  334678899999999999887644  7888999999999998874333345778899999


Q ss_pred             EeCCCCCCCccccc-----ccccCCCCCEEE
Q 035852          341 LDLSFNELEWKIPR-----SFSRFCNLRSIS  366 (960)
Q Consensus       341 L~Ls~n~l~~~~p~-----~l~~l~~L~~L~  366 (960)
                      |.|..|.-.+.-+.     .+.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999887665544     345567776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=8.2e-05  Score=74.33  Aligned_cols=85  Identities=27%  Similarity=0.314  Sum_probs=57.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCc
Q 035852          110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSL  189 (960)
Q Consensus       110 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~  189 (960)
                      .+...+.|++.+|.+.++   ....+++.|++|.||-|+++..-|  +..|++|+.|+|..|.|.++  ..+..+.++++
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sl--dEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESL--DELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccH--HHHHHHhcCch
Confidence            355677888888888765   344577888888888888776544  67788888888888877644  34445555555


Q ss_pred             cceeecCCCCCC
Q 035852          190 LENLDLSGVDLS  201 (960)
Q Consensus       190 L~~L~Ls~n~l~  201 (960)
                      |+.|-|..|...
T Consensus        90 Lr~LWL~ENPCc  101 (388)
T KOG2123|consen   90 LRTLWLDENPCC  101 (388)
T ss_pred             hhhHhhccCCcc
Confidence            555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.33  E-value=0.0013  Score=65.96  Aligned_cols=66  Identities=27%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             cCCCCCCEEeCCCC--cCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC
Q 035852          284 QNWTSLRHLDLSSN--HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE  349 (960)
Q Consensus       284 ~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~  349 (960)
                      -.+++|+.|.++.|  ++.+.++.....+++|++|++++|++...-....+..+.+|..|++.+|..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            34445555555555  3333333333444555555555555531000012334445555555555433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.99  E-value=0.0016  Score=76.20  Aligned_cols=127  Identities=25%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             cCCCCCCEEEccCCc-CCCCCCCCccC-CCCCcEEeCCCCC-CCCChhHHhhcCCCCCCEEeccCcccCCC--CcccccC
Q 035852          211 NALRSLLVLQLAGCQ-LSHFPPLSVAN-FSSLVTLDLSHNQ-FDNSLIATQLYGLCNLVFLDLSDNNFQGP--IPDTIQN  285 (960)
Q Consensus       211 ~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~  285 (960)
                      ..+++|+.|+++.+. ++...-..++. +++|++|.+..+. +++..+......++.|++|++++|.....  +.....+
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            445666666666665 44333223332 6677777766665 55445555556677788888887765311  2222344


Q ss_pred             CCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccc--cccHHHHhcCCCCCEEeCCCCC
Q 035852          286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG--RISSVLLENLSSIQSLDLSFNE  347 (960)
Q Consensus       286 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~i~~~~l~~l~~L~~L~Ls~n~  347 (960)
                      +++|+.|.+....-          +..++.+.+....-..  .........+++++.+.+..+.
T Consensus       320 c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  320 CPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            66666554433221          3333334333322211  2222445667777777776666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.97  E-value=0.0028  Score=37.93  Aligned_cols=10  Identities=40%  Similarity=0.444  Sum_probs=3.8

Q ss_pred             eeecCcccCc
Q 035852          834 SLNLSHNFFS  843 (960)
Q Consensus       834 ~L~Ls~N~l~  843 (960)
                      .||||+|+++
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.004  Score=37.29  Aligned_cols=22  Identities=50%  Similarity=0.628  Sum_probs=15.2

Q ss_pred             CCCEEECcCCcccccCCCCCCCC
Q 035852          855 LLESLDFSSNRLEGEIPKNTVNL  877 (960)
Q Consensus       855 ~L~~L~Ls~N~l~g~iP~~l~~l  877 (960)
                      +|+.||||+|+++ .||.++++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4677788888777 777776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.69  E-value=0.0043  Score=72.54  Aligned_cols=86  Identities=23%  Similarity=0.148  Sum_probs=42.2

Q ss_pred             CCCCCCEEeccCcccCCC--CcccccCCCCCCEEeCCCC-cCCCcch----hhhcCCCCCCEEeeeCcc-ccccccHHHH
Q 035852          261 GLCNLVFLDLSDNNFQGP--IPDTIQNWTSLRHLDLSSN-HFSYLIP----EWLNKFSRLEYLSLSSNR-LQGRISSVLL  332 (960)
Q Consensus       261 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-l~~~i~~~~l  332 (960)
                      .++.|+.|.+.++.-...  +-.....++.|+.|+++++ ......+    .....+++|+.|+++.+. +++..- ..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence            457777777776643322  2234456677777777652 1111111    122344566666666655 332211 222


Q ss_pred             h-cCCCCCEEeCCCCC
Q 035852          333 E-NLSSIQSLDLSFNE  347 (960)
Q Consensus       333 ~-~l~~L~~L~Ls~n~  347 (960)
                      . .+++|++|.+..|.
T Consensus       265 ~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCS  280 (482)
T ss_pred             HhhCCCcceEccCCCC
Confidence            2 25556666555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.80  E-value=0.00044  Score=78.49  Aligned_cols=42  Identities=31%  Similarity=0.491  Sum_probs=23.6

Q ss_pred             CCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCC
Q 035852          360 CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS  403 (960)
Q Consensus       360 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  403 (960)
                      +.+++++++.|.++......+......+.  .++++.++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~--~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCR--QLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhH--HHHHhhcccCccc
Confidence            45566666666666666655555554443  4555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.89  E-value=0.0016  Score=73.98  Aligned_cols=93  Identities=25%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             cCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCch----hhhhcCC-CCCCEEecCCCcCCCCC--
Q 035852          358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL----TNQIGKF-KVLNSVDLSENSISGQV--  430 (960)
Q Consensus       358 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~--  430 (960)
                      ...++++|++.+|.++......+...+..... .+..+++..|.+.+..    ...+..+ ..+++++++.|.++..-  
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~-~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~  280 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGES-LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR  280 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccch-hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence            34556666666666654444444433332211 1334666666665431    2223333 45567777777666442  


Q ss_pred             --cccccCCCCCcEEecCCcccc
Q 035852          431 --PWSLGKLSSLRYLDISNNQLN  451 (960)
Q Consensus       431 --p~~l~~l~~L~~L~L~~n~l~  451 (960)
                        ...+..+++++++.++.|.+.
T Consensus       281 ~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  281 DLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHhhhHHHHHhhcccCccc
Confidence              223345556666666666655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.13  E-value=0.012  Score=57.79  Aligned_cols=84  Identities=18%  Similarity=0.219  Sum_probs=73.0

Q ss_pred             hccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEE
Q 035852          805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFN  884 (960)
Q Consensus       805 ~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~  884 (960)
                      ....+.||+|.|++- ..-..+..++.|..||+|.|++. -.|+.++++..+..+++..|.++ ..|.+.+.++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            345689999999987 55667888999999999999997 68999999999999999999988 7899999999999999


Q ss_pred             cccCcce
Q 035852          885 ISYNNLS  891 (960)
Q Consensus       885 ls~N~l~  891 (960)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.99  E-value=0.15  Score=28.24  Aligned_cols=12  Identities=50%  Similarity=0.883  Sum_probs=4.8

Q ss_pred             ccEEEccCCccc
Q 035852          808 LTNIDLSNNKFS  819 (960)
Q Consensus       808 L~~L~Ls~N~l~  819 (960)
                      |+.|+|++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            455555555544

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.51  E-value=0.25  Score=27.37  Aligned_cols=11  Identities=36%  Similarity=0.748  Sum_probs=3.5

Q ss_pred             CcEEecCCCcc
Q 035852          682 LETIDIGENEF  692 (960)
Q Consensus       682 L~~L~Ls~N~l  692 (960)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.78  E-value=0.5  Score=29.48  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=14.8

Q ss_pred             CCCCcEEecCCCcccccCchHHh
Q 035852          679 CTELETIDIGENEFSGNVPAWIG  701 (960)
Q Consensus       679 l~~L~~L~Ls~N~l~g~ip~~~~  701 (960)
                      +++|++|+|++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777776 6666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.78  E-value=0.5  Score=29.48  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=14.8

Q ss_pred             CCCCcEEecCCCcccccCchHHh
Q 035852          679 CTELETIDIGENEFSGNVPAWIG  701 (960)
Q Consensus       679 l~~L~~L~Ls~N~l~g~ip~~~~  701 (960)
                      +++|++|+|++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777776 6666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.26  E-value=0.63  Score=29.03  Aligned_cols=14  Identities=43%  Similarity=0.600  Sum_probs=7.7

Q ss_pred             CCCCEEECcCCccc
Q 035852          854 ALLESLDFSSNRLE  867 (960)
Q Consensus       854 ~~L~~L~Ls~N~l~  867 (960)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.26  E-value=0.63  Score=29.03  Aligned_cols=14  Identities=43%  Similarity=0.600  Sum_probs=7.7

Q ss_pred             CCCCEEECcCCccc
Q 035852          854 ALLESLDFSSNRLE  867 (960)
Q Consensus       854 ~~L~~L~Ls~N~l~  867 (960)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.26  E-value=0.25  Score=30.18  Aligned_cols=12  Identities=50%  Similarity=0.825  Sum_probs=4.1

Q ss_pred             ccEEEccCCccc
Q 035852          808 LTNIDLSNNKFS  819 (960)
Q Consensus       808 L~~L~Ls~N~l~  819 (960)
                      |+.|+|++|+|+
T Consensus         4 L~~L~l~~n~i~   15 (24)
T PF13516_consen    4 LETLDLSNNQIT   15 (24)
T ss_dssp             -SEEE-TSSBEH
T ss_pred             CCEEEccCCcCC
Confidence            334444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.17  E-value=0.44  Score=29.06  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=16.1

Q ss_pred             hcccceeecCcccCcccCchhhc
Q 035852          829 LRELRSLNLSHNFFSGRIPENIG  851 (960)
Q Consensus       829 l~~L~~L~Ls~N~l~g~iP~~l~  851 (960)
                      +++|+.|||++|++++.....|+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            36799999999999987666554

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.44  E-value=0.42  Score=46.54  Aligned_cols=81  Identities=23%  Similarity=0.190  Sum_probs=35.7

Q ss_pred             CCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHh-cCCCCCEEeCCCCC-CCcccccccccCCCCCEEE
Q 035852          289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE-NLSSIQSLDLSFNE-LEWKIPRSFSRFCNLRSIS  366 (960)
Q Consensus       289 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~-~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~  366 (960)
                      ++.+|-++..|...--+.+..++.++.|.+.+|.--+..-...++ -.++|+.|++++|. |+..--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            444444444444433344444555555555544432221111111 23456666666553 3333333444555555555


Q ss_pred             cCC
Q 035852          367 LSG  369 (960)
Q Consensus       367 L~~  369 (960)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	960
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-43
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-43
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-30
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-15
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-05
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		2e-04
3o53_A	317	Crystal Structure Of Lrim1 Leucine-Rich Repeat Doma		2e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		5e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		5e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		7e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		7e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		8e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		8e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		8e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  173 bits (438), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 203/701 (28%), Positives = 305/701 (43%), Gaps = 119/701 (16%)
Query: 287 TSLRHLDLSSNHFSYLIPEW--LNKFSRLEYLSLSSNRLQ--GRISSVLLENLSSIQSLD 342
            SL  LDLS N  S  +     L   S L++L++SSN L   G++S  L   L+S++ LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVLD 157
Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
           LS N                   S+SG  +    V  VL+   GC    L+ L +S   +
Sbjct: 158 LSAN-------------------SISGANV----VGWVLS--DGCGE--LKHLAISGNKI 190
Query: 403 SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL 462
           SG +   + +   L  +D+S N+ S  +P+ LG  S+L++LDIS N+L+G  S    +  
Sbjct: 191 SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 246
Query: 463 SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDS 521
           + L     S N       P  +P+  L+ L L         P +L    + L  LD+S +
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 522 GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP--NLTEVSQLGTLDLSANNLSGQLPL-- 577
                +P  F+ S +    L+LS+N   GE+P   L ++  L  LDLS N  SG+LP   
Sbjct: 305 HFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 578 --LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
             L+++++ LDLS N  SG IL  +C     T   Q + L++N   G+IP    N   L+
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 636 VLRLDNNKFTGKLPTSLGA------------------------XXXXXXXXXXXXXXXGT 671
            L L  N  +G +P+SLG+                                       G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 672 LPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731
           +P  L NCT L  I +  N  +G +P WIG R   + IL L +N F G  P EL     L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 732 KILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL 791
             L L  N  +GTIP         A F  S  I      ++F    ++  I    +++E 
Sbjct: 541 IWLDLNTNLFNGTIPA--------AMFKQSGKIA-----ANFIAGKRYVYIKNDGMKKEC 587
Query: 792 ITLEGKTLTFKAVL-----RLLTN--IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844
               G  L F+ +      RL T    ++++  + G           +  L++S+N  SG
Sbjct: 588 HG-AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 845 RIPENIGAMAL------------------------LESLDFSSNRLEGEIPKNTVNLVFL 880
            IP+ IG+M                          L  LD SSN+L+G IP+    L  L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 881 SHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKK 921
           +  ++S NNLSG +P+  QF TF  + ++ +  LCG  L +
Sbjct: 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 150/510 (29%), Positives = 232/510 (45%), Gaps = 121/510 (23%)
Query: 397 LSNTTLSGSLTNQIGKFKV---LNSVDLSENSISGQVPW--SLGKLSSLRYLDISNNQLN 451
           LSN+ ++GS++     FK    L S+DLS NS+SG V    SLG  S L++L++S+N L+
Sbjct: 84  LSNSHINGSVSG----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
                            +  + S  LK N        LE LDL +  +         S  
Sbjct: 140 -----------------FPGKVSGGLKLN-------SLEVLDLSANSI---------SGA 166
Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
           ++V   +SD                +  +L++S N+I G++ +++    L  LD+S+NN 
Sbjct: 167 NVVGWVLSDG-------------CGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNF 212
Query: 572 SGQLPLLA--SNVMVLDLSKNKLSGSILHFV--CHETNGTRLTQIINLEDNLLAGEIPDC 627
           S  +P L   S +  LD+S NKLSG     +  C E       +++N+  N   G IP  
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL------KLLNISSNQFVGPIPP- 265
Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDI 687
            +  + L  L L  NKFTG++P  L                        G C  L  +D+
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLS-----------------------GACDTLTGLDL 301
Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE-LCHLAFLKILVLAGNNLSGTIP 746
             N F G VP + G     +  L L SN F G  P++ L  +  LK+L L+ N  SG +P
Sbjct: 302 SGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 747 TCISNFTAMATFLGSDSIYTIQYPSD-FSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
             ++N +A        S+ T+   S+ FS P     I     +    TL+          
Sbjct: 361 ESLTNLSA--------SLLTLDLSSNNFSGP-----ILPNLCQNPKNTLQ---------- 397
Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
                + L NN F+G+IP  ++   EL SL+LS N+ SG IP ++G+++ L  L    N 
Sbjct: 398 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 866 LEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
           LEGEIP+  + +  L    + +N+L+GE+P
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIP 483

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  172 bits (437), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 203/701 (28%), Positives = 305/701 (43%), Gaps = 119/701 (16%)
Query: 287 TSLRHLDLSSNHFSYLIPEW--LNKFSRLEYLSLSSNRLQ--GRISSVLLENLSSIQSLD 342
            SL  LDLS N  S  +     L   S L++L++SSN L   G++S  L   L+S++ LD
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVLD 154
Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
           LS N                   S+SG  +    V  VL+   GC    L+ L +S   +
Sbjct: 155 LSAN-------------------SISGANV----VGWVLS--DGCGE--LKHLAISGNKI 187
Query: 403 SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL 462
           SG +   + +   L  +D+S N+ S  +P+ LG  S+L++LDIS N+L+G  S    +  
Sbjct: 188 SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 243
Query: 463 SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDS 521
           + L     S N       P  +P+  L+ L L         P +L    + L  LD+S +
Sbjct: 244 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 522 GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP--NLTEVSQLGTLDLSANNLSGQLPL-- 577
                +P  F+ S +    L+LS+N   GE+P   L ++  L  LDLS N  SG+LP   
Sbjct: 302 HFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 578 --LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
             L+++++ LDLS N  SG IL  +C     T   Q + L++N   G+IP    N   L+
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 636 VLRLDNNKFTGKLPTSLGA------------------------XXXXXXXXXXXXXXXGT 671
            L L  N  +G +P+SLG+                                       G 
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 672 LPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731
           +P  L NCT L  I +  N  +G +P WIG R   + IL L +N F G  P EL     L
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 732 KILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL 791
             L L  N  +GTIP         A F  S  I      ++F    ++  I    +++E 
Sbjct: 538 IWLDLNTNLFNGTIPA--------AMFKQSGKIA-----ANFIAGKRYVYIKNDGMKKEC 584
Query: 792 ITLEGKTLTFKAVL-----RLLTN--IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844
               G  L F+ +      RL T    ++++  + G           +  L++S+N  SG
Sbjct: 585 HG-AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 845 RIPENIGAMAL------------------------LESLDFSSNRLEGEIPKNTVNLVFL 880
            IP+ IG+M                          L  LD SSN+L+G IP+    L  L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 881 SHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKK 921
           +  ++S NNLSG +P+  QF TF  + ++ +  LCG  L +
Sbjct: 704 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 150/510 (29%), Positives = 232/510 (45%), Gaps = 121/510 (23%)
Query: 397 LSNTTLSGSLTNQIGKFKV---LNSVDLSENSISGQVPW--SLGKLSSLRYLDISNNQLN 451
           LSN+ ++GS++     FK    L S+DLS NS+SG V    SLG  S L++L++S+N L+
Sbjct: 81  LSNSHINGSVSG----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 136
Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
                            +  + S  LK N        LE LDL +  +         S  
Sbjct: 137 -----------------FPGKVSGGLKLN-------SLEVLDLSANSI---------SGA 163
Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
           ++V   +SD                +  +L++S N+I G++ +++    L  LD+S+NN 
Sbjct: 164 NVVGWVLSDG-------------CGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNF 209
Query: 572 SGQLPLLA--SNVMVLDLSKNKLSGSILHFV--CHETNGTRLTQIINLEDNLLAGEIPDC 627
           S  +P L   S +  LD+S NKLSG     +  C E       +++N+  N   G IP  
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL------KLLNISSNQFVGPIPP- 262
Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDI 687
            +  + L  L L  NKFTG++P  L                        G C  L  +D+
Sbjct: 263 -LPLKSLQYLSLAENKFTGEIPDFLS-----------------------GACDTLTGLDL 298
Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE-LCHLAFLKILVLAGNNLSGTIP 746
             N F G VP + G     +  L L SN F G  P++ L  +  LK+L L+ N  SG +P
Sbjct: 299 SGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 747 TCISNFTAMATFLGSDSIYTIQYPSD-FSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
             ++N +A        S+ T+   S+ FS P     I     +    TL+          
Sbjct: 358 ESLTNLSA--------SLLTLDLSSNNFSGP-----ILPNLCQNPKNTLQ---------- 394
Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
                + L NN F+G+IP  ++   EL SL+LS N+ SG IP ++G+++ L  L    N 
Sbjct: 395 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 866 LEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
           LEGEIP+  + +  L    + +N+L+GE+P
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIP 480

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 32/255 (12%)
Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA 729
           G +P ++   T+L  + I     SG +P ++ +    ++ L    N   G  P  +  L 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789
            L  +   GN +SG IP    +F+ + T     S+   +       P  F N+   FV  
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFT-----SMTISRNRLTGKIPPTFANLNLAFV-- 202
Query: 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN 849
                                 DLS N   G+        +  + ++L+ N  +  + + 
Sbjct: 203 ----------------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239
Query: 850 IGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYI 909
           +G    L  LD  +NR+ G +P+    L FL   N+S+NNL GE+P       FD S+Y 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 910 GDEYLCGPVLKKLCT 924
            ++ LCG  L   CT
Sbjct: 300 NNKCLCGSPLPA-CT 313

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 132/312 (42%), Gaps = 28/312 (8%)
Query: 212 ALRSLLVLQLAGCQLSHFPPL---SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268
            ++ L +L+     ++HF  L   S ANF SL  L +  N     L    L  L NL  L
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTL 352
Query: 269 DLSDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR 326
           DLS N+ +     ++Q  N + L+ L+LS N    L  +   +  +LE L L+  RL   
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 327 ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV------ 380
                 +NL  +Q L+L++  L+       +    LR ++L G       +++       
Sbjct: 413 APQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTV 472
Query: 381 ----LAIFSGC-----VSDVLESL------DLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
               + I S C           SL      DLS+ +L+    + +   K +  ++L+ NS
Sbjct: 473 GSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANS 531
Query: 426 ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485
           I+   P  L  LS    +++S+N L+ T S IHF             +  T  ANP  + 
Sbjct: 532 INIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLR 591
Query: 486 VFQLEELDLRSC 497
             +L ++ L SC
Sbjct: 592 GVKLSDVKL-SC 602

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 157/390 (40%), Gaps = 57/390 (14%)
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH 298
           ++ +LDLS+N+    +  + L    NL  L L+ N       D+  +  SL HLDLS N+
Sbjct: 27  AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS-FS 357
            S L   W    S L +L+L  N  +    + L  +L+ +Q L +   +   KI R  F+
Sbjct: 86  LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 358 RFCNLRSISLSGIQL---------SHQKVSQ----------VLAIFSGCVSDVLESLDLS 398
               L  + +    L         S Q VS           +L IF    S V E L+L 
Sbjct: 146 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-ECLELR 204
Query: 399 NTTL---------SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
           +T L         +G   + I KF   N V +++ S+  QV   L ++S L  L+  +  
Sbjct: 205 DTDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESL-FQVMKLLNQISGLLELEFDDCT 262
Query: 450 LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHS 509
           LNG  +            F AS N   +  +P  V    +  L +   YL     S L+S
Sbjct: 263 LNGVGN------------FRASDNDRVI--DPGKVETLTIRRLHIPRFYLFYDL-STLYS 307
Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQ----LGTLD 565
               V     ++  V  +P    + +    YL LS N +  E    +        L TL 
Sbjct: 308 LTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLI 367
Query: 566 LSANNL-----SGQLPLLASNVMVLDLSKN 590
           L  N+L     +G+  L   N+  +D+SKN
Sbjct: 368 LRQNHLASLEKTGETLLTLKNLTNIDISKN 397

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           N  +L+L +N+ Q    DT ++   L  L LS N    +     N    L  L L  NRL
Sbjct: 36  NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
              + +   E LS ++ L L  N +E     +F+R  +LR + L  ++   + +S+  A 
Sbjct: 96  TT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK-RLEYISE--AA 151
Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
           F G V+    +L + N     +LT  +     L  ++LS N +    P S   L+SLR L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVR----LEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
            + + Q+  T+    F +L SL     S N+L    +  + P+ +LE + L
Sbjct: 208 WLMHAQV-ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           N  +L+L +N+ Q    DT ++   L  L LS N    +     N    L  L L  NRL
Sbjct: 36  NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
              + +   E LS ++ L L  N +E     +F+R  +LR + L  ++   + +S+  A 
Sbjct: 96  TT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK-RLEYISE--AA 151
Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
           F G V+    +L + N     +LT  +     L  ++LS N +    P S   L+SLR L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVR----LEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
            + + Q+  T+    F +L SL     S N+L    +  + P+ +LE + L
Sbjct: 208 WLMHAQV-ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
           +++ +LDLS N+    +    L    NL  L L  +       D   +  SL HLDLS N
Sbjct: 26  AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR-SF 356
           H S L   W    S L+YL+L  N  Q    + L  NL+++Q+L +   E   +I R  F
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAI 383
           +   +L  + +  + L + +   + +I
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSI 171

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 259 LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSL 318
           L  L NL +L L+ N  Q          T+L+ L L  N    L     +K + L YL+L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 319 SSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
           + N+LQ     V  + L+++  LDLS+N+L+      F +   L+ + L   QL 
Sbjct: 141 AHNQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 225 QLSHFPPLSVANFSSLVTL---DLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
           Q +    LS A F  L  L   +L +NQ   +L A     L  L  L L++N        
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASLPLG 101
Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
              + T L  L L  N    L     ++ ++L+ L L++N+LQ  I +   + L+++Q+L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTL 160
Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
            LS N+L+     +F R   L++I+L G Q
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
           +++ +LDLS N+    +    L    NL  L L  +       D   +  SL HLDLS N
Sbjct: 52  AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR-SF 356
           H S L   W    S L+YL+L  N  Q    + L  NL+++Q+L +   E   +I R  F
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 170
Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAI 383
           +   +L  + +  + L + +   + +I
Sbjct: 171 AGLTSLNELEIKALSLRNYQSQSLKSI 197

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 225 QLSHFPPLSVANFSSLVTL---DLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
           Q +    LS A F  L  L   +L +NQ   +L A     L  L  L L++N        
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASLPLG 101
Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
              + T L  L L  N    L     ++ ++L+ L L++N+LQ  I +   + L+++Q+L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTL 160
Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
            LS N+L+     +F R   L++I+L G Q
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 112/264 (42%), Gaps = 34/264 (12%)
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH 298
           ++ +LDLS+N+    +  + L    NL  L L+ N       D+  +  SL HLDLS N+
Sbjct: 53  AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS-FS 357
            S L   W    S L +L+L  N  +    + L  +L+ +Q L +   +   KI R  F+
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 358 RFCNLRSISLSGIQL---------SHQKVSQ----------VLAIFSGCVSDVLESLDLS 398
               L  + +    L         S Q VS           +L IF    S V E L+L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-ECLELR 230
Query: 399 NTTL---------SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
           +T L         +G   + I KF   N V +++ S+  QV   L ++S L  L+ S NQ
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESL-FQVMKLLNQISGLLELEFSRNQ 288
Query: 450 LNGTVSEIHFANLSSLTFFYASRN 473
           L      I F  L+SL   +   N
Sbjct: 289 LKSVPDGI-FDRLTSLQKIWLHTN 311

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 58/291 (19%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
           L +L  L L G Q++   PLS  N   L  L +  N+  +    + L  L NL  L L++
Sbjct: 65  LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNE 119
Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNH-FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL 331
           +N     P  + N T    L+L +NH  S L P  L+  + L YL+++ ++++       
Sbjct: 120 DNISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--- 172
Query: 332 LENLSSIQSLDLSFNELEWKIPRS-------FSRFCN--------LRSISLSGIQLSHQK 376
           + NL+ + SL L++N++E   P +       F+ + N             L+ +++ + K
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNK 232
Query: 377 VSQV-----------LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
           ++ +           L I +  +SD+    DL+        +NQI    VLN+       
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNN------- 285
Query: 426 ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
                      LS L  L ++NNQL     E+    L++LT  + S+N +T
Sbjct: 286 -----------LSQLNSLFLNNNQLGNEDXEV-IGGLTNLTTLFLSQNHIT 324

>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
           ++D++ +  +    Q+  +++ LDLS N  S +    L  F++LE L+LSSN L     +
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YET 73
Query: 330 VLLENLSSIQSLDLSFNELE-----------WKIPRSFSRFCNLRSISLSGIQLSHQKVS 378
           + LE+LS++++LDL+ N ++                + SR    R      I L++ K++
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133
Query: 379 QVLAIFSGCVSDVLESLDLS-NTTLSGSLTNQIGKFKVLNSVDLSEN---SISGQVPWSL 434
            +  +  GC S V + LDL  N   + +          L  ++L  N    + GQV +  
Sbjct: 134 MLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-- 190
Query: 435 GKLSSLRYLDISNNQL 450
              + L+ LD+S+N+L
Sbjct: 191 ---AKLKTLDLSSNKL 203

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 26/313 (8%)
Query: 207 PLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV 266
           P     + SL  L L          ++ A+F SL  L +  N     L    L  L NL 
Sbjct: 293 PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQ 352
Query: 267 FLDLSDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
            LDLS ++ +      +Q  N   L++L+LS N    L  +   +  +LE L ++   L 
Sbjct: 353 KLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH 412
Query: 325 GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV---- 380
            +      +NL  ++ L+LS   L+       +   +LR ++L G       +S+     
Sbjct: 413 VKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQ 472
Query: 381 ------LAIFSGC------------VSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422
                 + I S C            + +V   LDLS+ +L+G   + +   K L  ++++
Sbjct: 473 MVGSLEILILSSCNLLSIDQQAFHGLRNV-NHLDLSHNSLTGDSMDALSHLKGL-YLNMA 530
Query: 423 ENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPN 482
            N+I    P  L  LS    +++S+N L+ T S IHF             +  T  ANP 
Sbjct: 531 SNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPP 590
Query: 483 WVPVFQLEELDLR 495
            +   +L ++ L 
Sbjct: 591 SLRGVKLSDVKLH 603

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 11/232 (4%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           N   L+L +N  Q    ++ ++   L  L LS NH   +     N  + L  L L  NRL
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ-LSHQKVSQVLA 382
              I +     LS ++ L L  N +E     +F+R  +LR + L  ++ LS+  +S+   
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISE--G 179
Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
            F G  +    +L + N     +LT  I     L+ +DLS N +S   P S   L  L+ 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIK----LDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
           L +  +Q+   +    F NL SL     + N+LTL  +  + P+  LE + L
Sbjct: 236 LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 216 LLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           L  L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N 
Sbjct: 57  LTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNR 111
Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
                   ++    L+ L L  N    L P  L    +LE LSL++N+L   + + LL  
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
Query: 335 LSSIQSLDLSFNELEWKIPRSF 356
           L ++ +L L  N L + IP+ F
Sbjct: 171 LENLDTLLLQENSL-YTIPKGF 191

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
           L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N    
Sbjct: 60  LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 114
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
                ++    L+ L L  N    L P  L    +LE LSL++N+L   + + LL  L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLEN 173
Query: 338 IQSLDLSFNELEWKIPRSF 356
           + +L L  N L + IP+ F
Sbjct: 174 LDTLLLQENSL-YTIPKGF 191

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 216 LLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           L  L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N 
Sbjct: 57  LTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNR 111
Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
                   ++    L+ L L  N    L P  L    +LE LSL++N+L   + + LL  
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
Query: 335 LSSIQSLDLSFNELEWKIPRSF 356
           L ++ +L L  N L + IP+ F
Sbjct: 171 LENLDTLLLQENSL-YTIPKGF 191

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 225 QLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP-IPDT 282
           Q+S F   LS+ N   L+ LD+SH     +       GL +L  L ++ N+FQ   +PD 
Sbjct: 410 QMSEFSVFLSLRN---LIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
                +L  LDLS      L P   N  S L+ L+++SN+L+  +   + + L+S+Q + 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIW 524
Query: 343 LSFNELEWKIPR 354
           L  N  +   PR
Sbjct: 525 LHTNPWDCSCPR 536

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 188/506 (37%), Gaps = 83/506 (16%)
Query: 101 VGKINPALLDFEHLI-YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
           + K+ P L     L+  LNL +N+   I    F+    NL  LDL       +  N   N
Sbjct: 61  ISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCT-NLTELDLMSNSIHKIKSNPFKN 119
Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVL 219
             NL  L+L  N   GL    LG                 +  + +  L      SL  L
Sbjct: 120 QKNLIKLDLSHN---GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKL 176
Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFD-----------------------NSLIA 256
            L+   L  F P        L  L L++ Q +                       N L+A
Sbjct: 177 DLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLA 236
Query: 257 TQ---LYGL--CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFS 311
           T      GL   NL  LDLS NN       +     SLR+L L  N+   L P      S
Sbjct: 237 TSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLS 296
Query: 312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
            L YLSL     +  +S     N+      D SF  L++           L  +++    
Sbjct: 297 NLRYLSLKRAFTKQSVSLASHPNID-----DFSFQWLKY-----------LEYLNMDDNN 340
Query: 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS-GSLTNQIG---KFKVLNSVDLSENSIS 427
           +   K +     F+G VS  L+ L LS T  S  +LTN+         L +++L++N IS
Sbjct: 341 IPSTKSN----TFTGLVS--LKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHIS 394
Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF 487
                +   L  LR LD+  N++   +S   +  L ++   Y S N     +  ++  V 
Sbjct: 395 KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVP 454
Query: 488 QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQ 547
            L+ L LR   L               N+DIS S      P R  +++T    L LSNN 
Sbjct: 455 SLQRLMLRRVALK--------------NVDISPS------PFRPLRNLT---ILDLSNNN 491
Query: 548 IHGEIPNLTE-VSQLGTLDLSANNLS 572
           I     +L E +  L  LD   NNL+
Sbjct: 492 IANINEDLLEGLENLEILDFQHNNLA 517

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
           L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N    
Sbjct: 60  LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 114
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
                ++    L+ L L  N    L P  L    +LE LSL++N+L   + + LL  L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLEN 173
Query: 338 IQSLDLSFNELEWKIPRSF 356
           + +L L  N L + IP+ F
Sbjct: 174 LDTLLLQENSL-YTIPKGF 191

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 113 HLIYLNLSYN--DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
            L  L+LS N   FKG       G+   L++LDLS  G + M  N +G L  L++L+ + 
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQH 110
Query: 171 NYLGG-------LYVEDLGWXXXXXXXXXXXXXGV-------DLSKVSNG-------PLV 209
           + L         L + +L +             G+       ++ K++         P +
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 210 TNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLD 269
              LR+L  L L+ CQL    P +  + SSL  L++SHN F  SL       L +L  LD
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLD 229
Query: 270 LSDNNFQGPIPDTIQNW-TSLRHLDLSSNHFS 300
            S N+        +Q++ +SL  L+L+ N F+
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
           L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N    
Sbjct: 61  LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 115
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
                ++    L+ L L  N    L P  L    +LE LSL++N L   + + LL  L +
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 174
Query: 338 IQSLDLSFNELEWKIPRSF 356
           + +L L  N L + IP+ F
Sbjct: 175 LDTLLLQENSL-YTIPKGF 192

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
           L TLDLSHNQ  +  +  Q   L  L  LD+S N         ++    L+ L L  N  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
             L P  L    +LE LSL++N L   + + LL  L ++ +L L  N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 216 LLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           L  L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N 
Sbjct: 57  LTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNR 111
Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
                   ++    L+ L L  N    L P  L    +LE LSL++N L   + + LL  
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNG 170
Query: 335 LSSIQSLDLSFNELEWKIPRSF 356
           L ++ +L L  N L + IP+ F
Sbjct: 171 LENLDTLLLQENSL-YTIPKGF 191

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
           L TLDLSHNQ  +  +  Q   L  L  LD+S N         ++    L+ L L  N  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
             L P  L    +LE LSL++N L   + + LL  L ++ +L L  N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
           L L  C+L+    L V      L TLDLSHNQ  +  +  Q   L  L  LD+S N    
Sbjct: 60  LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 114
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
                ++    L+ L L  N    L P  L    +LE LSL++N L   + + LL  L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173
Query: 338 IQSLDLSFNELEWKIPRSF 356
           + +L L  N L + IP+ F
Sbjct: 174 LDTLLLQENSL-YTIPKGF 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	960
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-29
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  574 bits (1483), Expect = 0.0
 Identities = 232/910 (25%), Positives = 352/910 (38%), Gaps = 174/910 (19%)

Query: 26  SSYVGCVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNP 85
           +S    +  E   L+SFK  L D  N L  W  + + C + GV C +    V  + L + 
Sbjct: 4   ASPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSS- 59

Query: 86  WEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLS 145
                    K  +     ++ +LL    L  L LS +   G  +  F     +L  LDLS
Sbjct: 60  ---------KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLS 108

Query: 146 GAGFVGMIP--NQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLS-K 202
                G +     +G+ S L++LN+  N L       +     L+ LE LDLS   +S  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 203 VSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL 262
              G ++++    L  L ++G ++S    +S                             
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVS---------------------------RC 199

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR 322
            NL FLD+S NNF   IP  + + ++L+HLD+S N  S      ++  + L+ L++SSN+
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 323 LQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA 382
             G I       L S+Q L L+ N+   +IP                             
Sbjct: 259 FVGPIPP---LPLKSLQYLSLAENKFTGEIPDF--------------------------- 288

Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
                              LSG+          L  +DLS N   G VP   G  S L  
Sbjct: 289 -------------------LSGACDT-------LTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPP 502
           L +S+N  +G +       +  L     S N  +                       G  
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-----------------------GE- 358

Query: 503 FPSWLHS-QNHLVNLDISDSGIVDTIPNRFWKSI-TQFNYLSLSNNQIHGEIPN-LTEVS 559
            P  L +    L+ LD+S +     I     ++       L L NN   G+IP  L+  S
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 560 QLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE 616
           +L +L LS N LSG +P      S +  L L  N L G I   +        L + + L+
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM---YVKTL-ETLILD 474

Query: 617 DNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSL 676
            N L GEIP    N   L  + L NN+ TG++P  +G L  L  L L NN+ SG +P  L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 677 GNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVL 736
           G+C  L  +D+  N F+G +PA + +         + +N   G   + + +    K    
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 737 AGN--NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL 794
           AGN     G     ++  +       +  +Y       F                     
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD-------------------- 629

Query: 795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA 854
                        +  +D+S N  SG IP EI  +  L  LNL HN  SG IP+ +G + 
Sbjct: 630 ---------NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 855 LLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYL 914
            L  LD SSN+L+G IP+    L  L+  ++S NNLSG +P+  QF TF  + ++ +  L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

Query: 915 CGPVLKKLCT 924
           CG  L +   
Sbjct: 741 CGYPLPRCDP 750

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  296 bits (759), Expect = 2e-88
 Identities = 139/719 (19%), Positives = 241/719 (33%), Gaps = 88/719 (12%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           S  V   +  +L+  P       +++  L+L+HNQ    L A        L  LD+  N 
Sbjct: 5   SHEVADCSHLKLTQVPD---DLPTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNT 60

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
                P+  Q    L+ L+L  N  S L  +     + L  L L SN +Q  I +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
             ++ +LDLS N L      +  +  NL+ + LS  ++   K            +  L+ 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE----ELDIFANSSLKK 175

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLG---KLSSLRYLDISNNQLN 451
           L+LS+  +             L  + L+   +   +   L      +S+R L +SN+QL+
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 452 GTVSEIHFANL--SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHS 509
              S   F  L  ++LT    S N+L +  N ++  + QLE   L    +   F   LH 
Sbjct: 236 T-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSA 568
             ++  L++  S                F   S+S   +          +  L  L++  
Sbjct: 295 LFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 569 NNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP 625
           N++ G    +     N+  L LS +  S   L      +       I+NL  N ++    
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLP-TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET 684
           D +    +L VL L  N+   +L       L  +  ++L  N        S      L+ 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 685 IDIGENEFSG-NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG 743
           + +        +      +    + IL L +N    +    L  L  L+IL L  NNL+ 
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA- 517

Query: 744 TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKA 803
                                  +   ++   P  F                        
Sbjct: 518 ----------------------RLWKHANPGGPIYFLKG--------------------- 534

Query: 804 VLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSS 863
            L  L  ++L +N F          L EL+ ++L  N  +            L+SL+   
Sbjct: 535 -LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 864 NRLEGEIPKN-TVNLVFLSHFNISYNNLSGEVPDEAQFATF-----DSSSYIGDEYLCG 916
           N +     K        L+  ++ +N         A F  +      +   +   YLC 
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  290 bits (744), Expect = 3e-86
 Identities = 132/634 (20%), Positives = 238/634 (37%), Gaps = 44/634 (6%)

Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYL 173
               + S+      Q+P  L +  N+  L+L+      +        S L  L++  N +
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 174 GGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLS 233
             L   +      L +L+ L+L   +LS++S+         +L  L L    +       
Sbjct: 62  SKL---EPELCQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIKNNP 116

Query: 234 VANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW--TSLRH 291
                +L+TLDLSHN   +S        L NL  L LS+N  Q    + +  +  +SL+ 
Sbjct: 117 FVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE--NLSSIQSLDLSFNELE 349
           L+LSSN      P   +   RL  L L++ +L   ++  L      +SI++L LS ++L 
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA-IFSGCVSDVLESLDLSNTTLSGSLTN 408
                +F     L+  +L+ + LS+  ++ V    F+      LE   L    +    ++
Sbjct: 236 TTSNTTFL---GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ--LEYFFLEYNNIQHLFSH 290

Query: 409 QIGKFKVLNSVDLSEN---------SISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHF 459
            +     +  ++L  +         S+     +S   L  L +L++ +N + G  S + F
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-F 349

Query: 460 ANLSSLTFFYASRNSLTLKANPNWVPVF----QLEELDLRSCYLGPPFPSWLHSQNHLVN 515
             L +L +   S +  +L+   N   V      L  L+L    +            HL  
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQ 574
           LD+  + I   +  + W+ +     + LS N+      N    V  L  L L    L   
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 575 LPLLA-----SNVMVLDLSKNKLSGSILHFVCHETNGTRL----TQIINLEDNLLAGEIP 625
               +      N+ +LDLS N ++      +        L      +  L  +   G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685
                  +L +L L++N F          L  L+ + L  NNL+        N   L+++
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHG 719
           ++ +N  +       G  F  +  L +R N F  
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (635), Expect = 4e-71
 Identities = 107/528 (20%), Positives = 189/528 (35%), Gaps = 33/528 (6%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRF-LGSMGNLRFLDLSGAGFVGMIPNQIG 158
           L        +  E+L  L LS N  + ++     + +  +L+ L+LS        P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLV 218
            +  L  L L    LG    E L      + + NL LS   LS  SN   +     +L +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN----- 273
           L L+   L+     S A    L    L +N     L +  L+GL N+ +L+L  +     
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 274 ----NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR-IS 328
               +       + Q    L HL++  N    +          L+YLSLS++    R ++
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 329 SVLLENL--SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
           +    +L  S +  L+L+ N++      +FS   +L  + L   ++  +   Q    + G
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE---WRG 428

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG--QVPWSLGKLSSLRYLD 444
             +  +  + LS         N       L  + L   ++      P     L +L  LD
Sbjct: 429 LEN--IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 445 ISNNQLNGTVSEIHFANLSSLTFFYASRNSLT---LKANPNWVPVF-----QLEELDLRS 496
           +SNN +   +++     L  L       N+L      ANP     F      L  L+L S
Sbjct: 487 LSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 497 CYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNL- 555
                           L  +D+  + + +T+P   + +      L+L  N I      + 
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 556 -TEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCH 602
                 L  LD+  N        +A  V  ++ +   +     H++C+
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (635), Expect = 4e-71
 Identities = 138/611 (22%), Positives = 221/611 (36%), Gaps = 86/611 (14%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
           L    +       +L  L+L  N  + I          NL  LDLS  G           
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL 219
           L NLQ L L  N +  L  E+L      S L+ L+LS   + + S G    +A+  L  L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF--HAIGRLFGL 200

Query: 220 QLAGCQLSHFPPLSVANF---SSLVTLDLSHNQFDNSLIATQLYGLC--NLVFLDLSDNN 274
            L   QL       +      +S+  L LS++Q  ++   T   GL   NL  LDLS NN
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE- 333
                 D+      L +  L  N+  +L    L+    + YL+L  +  +  IS   L  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 334 -------NLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
                   L  ++ L++  N++       F+   NL+ +SLS    S             
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS----------LRT 369

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDIS 446
             ++   SL  S                 L+ ++L++N IS     +   L  L  LD+ 
Sbjct: 370 LTNETFVSLAHSP----------------LHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 447 NNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
            N++   ++   +  L ++   Y S N        ++  V  L+ L LR           
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR---------- 463

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLD 565
                 L N+D S S          ++ +     L LSNN I     + L  + +L  LD
Sbjct: 464 ----VALKNVDSSPS---------PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 566 LSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP 625
           L  NNL+              L K+   G  ++F+      + L  I+NLE N       
Sbjct: 511 LQHNNLA-------------RLWKHANPGGPIYFL---KGLSHL-HILNLESNGFDEIPV 553

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLG-NCTELET 684
           + + +   L ++ L  N       +       L+SL+L+ N ++       G     L  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 685 IDIGENEFSGN 695
           +D+  N F   
Sbjct: 614 LDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  193 bits (493), Expect = 4e-52
 Identities = 87/456 (19%), Positives = 152/456 (33%), Gaps = 59/456 (12%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSG---------AGFV 150
           L    N +      L Y  L YN+ + +     L  + N+R+L+L           A   
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 151 GMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG--VDLSKVSNGPL 208
            +       L  L++LN+  N + G+          L  L+ L LS     L  ++N   
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGI---KSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 209 VTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268
           V+ A   L +L L   ++S     + +    L  LDL  N+    L   +  GL N+  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL--IPEWLNKFSRLEYLSLSSNRLQGR 326
            LS N +     ++     SL+ L L       +   P        L  L LS+N +   
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN- 494

Query: 327 ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
           I+  +LE L  ++ LDL  N L      +                         +    G
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGP--------------------IYFLKG 534

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDIS 446
                L  L+L +                L  +DL  N+++           SL+ L++ 
Sbjct: 535 LSH--LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 447 NNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
            N +     ++      +LT      N                      +C     F +W
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFD------------------CTCESIAWFVNW 634

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLS 542
           ++ + H    ++S   + +T P+     +  F+  S
Sbjct: 635 IN-ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 7e-12
 Identities = 33/218 (15%), Positives = 53/218 (24%), Gaps = 57/218 (26%)

Query: 680 TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN 739
              E  D    + +  VP  +      + +L L  N+   +        + L  L +  N
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 740 NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTL 799
            +S   P                                                     
Sbjct: 60  TISKLEPELCQK------------------------------------------------ 71

Query: 800 TFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESL 859
                L +L  ++L +N+ S            L  L+L  N               L +L
Sbjct: 72  -----LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 860 DFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
           D S N L        V L  L    +S N +     +E
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 96  ESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPN 155
              A  G     L    HL  LNL  N F  I        +  L+ +DL       +  +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 156 QIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
              N  +L+ LNL+ N +  +  +  G       L  LD+  
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPA--FRNLTELDMRF 618

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  254 bits (652), Expect = 4e-74
 Identities = 122/680 (17%), Positives = 207/680 (30%), Gaps = 136/680 (20%)

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           +  Q         P        S   LDLS N     L +   +    L  LDLS    Q
Sbjct: 10  ITYQCMELNFYKIPD---NLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
                  Q+ + L  L L+ N    L     +  S L+ L      L   + +  + +L 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK 124

Query: 337 SIQSLDLSFNELE-WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
           +++ L+++ N ++ +K+P  FS   NL  + LS  ++     + +          VL  +
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL---------RVLHQM 175

Query: 396 DLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVS 455
            L N +L                 DLS N ++  +     K   L  L + NN  +  V 
Sbjct: 176 PLLNLSL-----------------DLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 456 EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVN 515
           +     L+ L            + N        LE L            +    +  L  
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-----------CNLTIEEFRLAY 266

Query: 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQL 575
           LD     I+D         +T  +  SL +  I   + + +       L+L         
Sbjct: 267 LDYYLDDIIDLFNC-----LTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFP 320

Query: 576 PLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
            L   ++  L  + NK   +                                 ++   L 
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF------------------------------SEVDLPSLE 350

Query: 636 VLRLDNNK--FTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693
            L L  N   F G    S    + L+ L L  N +  T+  +     +LE +D   +   
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFT 753
                 +      +I L +        F      L+ L++L +AGN+             
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------------ 457

Query: 754 AMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL 813
                             +   P  F                         LR LT +DL
Sbjct: 458 -----------------QENFLPDIFTE-----------------------LRNLTFLDL 477

Query: 814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873
           S  +     P     L  L+ LN+SHN F          +  L+ LD+S N +     + 
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 874 TVNLV-FLSHFNISYNNLSG 892
             +    L+  N++ N+ + 
Sbjct: 538 LQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  251 bits (643), Expect = 8e-73
 Identities = 114/633 (18%), Positives = 211/633 (33%), Gaps = 81/633 (12%)

Query: 128 QIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL 187
           +IP  L    + + LDLS      +      +   LQ L+L    +  +   + G    L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSL 75

Query: 188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSH 247
           S L  L L+G  +  ++ G    + L SL  L      L+      + +  +L  L+++H
Sbjct: 76  SHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 248 NQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLR----HLDLSSNHFSYLI 303
           N   +  +      L NL  LDLS N  Q      ++    +      LDLS N  +++ 
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 304 PEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR---SFSRFC 360
           P    +  RL  L+L +N     +    ++ L+ ++   L   E   +        S   
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVD 420
            L ++++   +L++                               + +       ++S  
Sbjct: 253 GLCNLTIEEFRLAY------------------------LDYYLDDIIDLFNCLTNVSSFS 288

Query: 421 LSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKAN 480
           L   +I     +S       ++L++ N +       +   +L  LTF      +   + +
Sbjct: 289 LVSVTIERVKDFSY--NFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 481 PNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNY 540
                   LE LDL              S+N L               ++     T   Y
Sbjct: 346 LP-----SLEFLDL--------------SRNGLSFK---------GCCSQSDFGTTSLKY 377

Query: 541 LSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSGSI 596
           L LS N +     N   + QL  LD   +NL             N++ LD+S      + 
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 597 LHFVCHETNGTRLTQIINLEDNLLAGEI-PDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL 655
                  ++     +++ +  N       PD +   R L  L L   +     PT+  +L
Sbjct: 438 NGIFNGLSS----LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 656 SLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSN 715
           S L+ L++ +NN              L+ +D   N    +    +      +  L L  N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 716 KFHGVFPLE--LCHLAFLKILVLAGNNLSGTIP 746
            F      +  L  +   + L++    +    P
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (600), Expect = 7e-67
 Identities = 107/619 (17%), Positives = 199/619 (32%), Gaps = 89/619 (14%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
           L    + +   F  L  L+LS  + + I       S+ +L  L L+G     +       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL 219
           LS+LQ L                                                     
Sbjct: 99  LSSLQKLV---------------------------------------------------- 106

Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI 279
                 L+      + +  +L  L+++HN   +  +      L NL  LDLS N  Q   
Sbjct: 107 -AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 280 PDTIQNWTSLR----HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
              ++    +      LDLS N  +++ P    +  RL  L+L +N     +    ++ L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 336 SSIQSLDLSFNELEWKIPR---SFSRFCNLRSISLSGIQLSH--QKVSQVLAIFSGCVSD 390
           + ++   L   E   +        S    L ++++   +L++    +  ++ +F+   + 
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN- 283

Query: 391 VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
            + S  L + T+                ++L               L SL+ L  ++N+ 
Sbjct: 284 -VSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLK---LKSLKRLTFTSNKG 337

Query: 451 NGTVSEIHFANLSSLTFFYASRNSLTLK--ANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508
                     +L SL F   SRN L+ K   + +      L+ LDL    +     ++L 
Sbjct: 338 GNA---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLS 567
            +  L +LD   S +        + S+    YL +S+             +S L  L ++
Sbjct: 395 LEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 568 ANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE 623
            N+              N+  LDLS+ +L            + + L Q++N+  N     
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSL-QVLNMSHNNFFSL 509

Query: 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL-SLLRSLHLRNNNLSGTLPVS--LGNCT 680
               +     L VL    N         L    S L  L+L  N+ + T      L    
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 681 ELETIDIGENEFSGNVPAW 699
           +   + +         P+ 
Sbjct: 570 DQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  206 bits (526), Expect = 6e-57
 Identities = 96/507 (18%), Positives = 171/507 (33%), Gaps = 38/507 (7%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
           L    N  +   + L  LN+++N  +  ++P +  ++ NL  LDLS      +    +  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 160 LSNLQY----LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRS 215
           L  +      L+L  N +  +     G   ++ L   L L     S ++        L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFI---QPGAFKEIRL-HKLTLRNNFDS-LNVMKTCIQGLAG 226

Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTL--------DLSHNQFDNSLIATQLYGLCNLVF 267
           L V +L   +  +   L   + S+L  L         L++  +    I      L N+  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
             L     +             +HL+L +  F       L    RL + S          
Sbjct: 287 FSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-- 342

Query: 328 SSVLLENLSSIQSLDLSFNELEWK--IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS 385
                 +L S++ LDLS N L +K    +S     +L+ + LS   +       + + F 
Sbjct: 343 ----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFL 393

Query: 386 GCVSDVLESLDLSNTTLSGSLTNQI-GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLD 444
           G     LE LD  ++ L       +    + L  +D+S              LSSL  L 
Sbjct: 394 GLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 445 ISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFP 504
           ++ N          F  L +LTF   S+  L   +   +  +  L+ L++          
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 505 SWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN---LTEVSQL 561
                 N L  LD S + I+ +         +   +L+L+ N       +   L  +   
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571

Query: 562 GTLDLSANNLSGQLPLLASNVMVLDLS 588
             L +    +    P     + VL L+
Sbjct: 572 RQLLVEVERMECATPSDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  147 bits (372), Expect = 5e-37
 Identities = 76/492 (15%), Positives = 144/492 (29%), Gaps = 91/492 (18%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
             ++DLS N +     +S      L+ LD+S  ++        + +LS L+    + N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPI 88

Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
              A   +  +  L++L      L       +     L  L+++ + I       ++ ++
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 536 TQFNYLSLSNNQIHGEIP----NLTEVS-QLGTLDLSANNLSGQLP--LLASNVMVLDLS 588
           T   +L LS+N+I          L ++     +LDLS N ++   P       +  L L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 589 KNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL 648
            N  S +++        G    ++  L       E            + + D +   G  
Sbjct: 209 NNFDSLNVMKTCI---QGLAGLEVHRLVLGEFRNEGN----------LEKFDKSALEG-- 253

Query: 649 PTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMI 708
              L  L++        +     +       T + +  +                     
Sbjct: 254 ---LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQ 307

Query: 709 ILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQ 768
            L L + KF          L    +  L   +  G       +                 
Sbjct: 308 HLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVD----------------- 345

Query: 769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK--FSGEIPAEI 826
                                               L  L  +DLS N   F G      
Sbjct: 346 ------------------------------------LPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 827 TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT-VNLVFLSHFNI 885
                L+ L+LS N     +  N   +  LE LDF  + L+     +  ++L  L + +I
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 886 SYNNLSGEVPDE 897
           S+ +        
Sbjct: 429 SHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (310), Expect = 4e-29
 Identities = 83/408 (20%), Positives = 145/408 (35%), Gaps = 39/408 (9%)

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSAN 569
               NLD+S + +       F  S  +   L LS  +I          +S L TL L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 570 NLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG-EIP 625
            +           S++  L   +  L+      +    +   L + +N+  NL+   ++P
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPI---GHLKTL-KELNVAHNLIQSFKLP 142

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR----SLHLRNNNLSGTLPVSLGNCTE 681
           + + N   L  L L +NK      T L  L  +     SL L  N ++   P +      
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IR 201

Query: 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE---------LCHLAFLK 732
           L  + +  N  S NV     +    + +  L   +F     LE         LC+L   +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI 792
             +   +     I    +  T +++F       TI+   DFS+   + ++       EL+
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV--TIERVKDFSYNFGWQHL-------ELV 312

Query: 793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF--FSGRIPENI 850
             +         L+ L  +  ++NK           L  L  L+LS N   F G   ++ 
Sbjct: 313 NCKFGQFPTLK-LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 851 GAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEA 898
                L+ LD S N +   +  N + L  L H +  ++NL        
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 1e-13
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 32/201 (15%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
                N        L  L ++ N F+   +P     + NL FLDLS      + P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL 219
           LS+LQ LN+  N    L   D      L+ L+ LD S        N              
Sbjct: 493 LSSLQVLNMSHNNFFSL---DTFPYKCLNSLQVLDYS-------LN-------------- 528

Query: 220 QLAGCQLSHFPPLSVAN-FSSLVTLDLSHNQFDNSLIATQLYG-LCNLVFLDLSDNNFQG 277
                 +       + +  SSL  L+L+ N F  +         + +   L +     + 
Sbjct: 529 -----HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 278 PIPDTIQNWTSLRHLDLSSNH 298
             P   Q    +  L+++   
Sbjct: 584 ATPSDKQG-MPVLSLNITCQM 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (604), Expect = 2e-67
 Identities = 109/568 (19%), Positives = 207/568 (36%), Gaps = 32/568 (5%)

Query: 140 RFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVD 199
           +  +    G    IP  +   ++ + L    N L  +          L  L  LDL+   
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFS---RLINLTFLDLTRCQ 68

Query: 200 LSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL 259
           +  +        +   L  L L    L      +++   +L  L        +S+    L
Sbjct: 69  IYWIHEDTF--QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI-SSIDFIPL 125

Query: 260 YGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE--YLS 317
           +    L  L L  N+              L+ LD  +N   YL  E ++   +     L+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRFCNLRSISLSGIQLSHQ 375
           L+ N + G        + +  QSL+    +    I +    S   +L   +   +     
Sbjct: 186 LNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 376 KVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLG 435
             +    +F G     +ES++L         +N    F  L  +DL+   +S ++P  L 
Sbjct: 244 SPA----VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 436 KLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV-PVFQLEELDL 494
            LS+L+ L +S N+    + +I  +N  SLT      N+  L+     +  +  L ELDL
Sbjct: 299 GLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 495 RSCYLG--PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552
               +         L + +HL +L++S +    ++    +K   Q   L L+  ++  + 
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 553 PN--LTEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGT 607
                  +  L  L+LS + L      L      +  L+L  N      +          
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN 667
           RL +I+ L    L+      + + + +  + L +N+ T     +L  L  +  L+L +N+
Sbjct: 477 RL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNH 534

Query: 668 LSGTLPVSLGNCTELETIDIGENEFSGN 695
           +S  LP  L   ++  TI++ +N     
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  229 bits (587), Expect = 4e-65
 Identities = 114/576 (19%), Positives = 199/576 (34%), Gaps = 60/576 (10%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
                 L  S+N    IQ       + NL FLDL+      +  +   +   L  L L  
Sbjct: 32  PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
           N L  +       L     L++L      +S +   PL  +  ++L  L L    +S   
Sbjct: 91  NPLIFM---AETALSGPKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIK 145

Query: 231 PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNL--VFLDLSDNNFQGPIPDTIQNWTS 288
                    L  LD  +N   + L    +  L     + L+L+ N+  G I     +   
Sbjct: 146 LPKGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAV 203

Query: 289 LRHLDLSSNHFSYLIPEWL--NKFSRLEYLSLSSNRLQGRISSVLLENLS--SIQSLDLS 344
            + L+        +I + L  +    L   +      +  IS  + E L   S++S++L 
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQ 262

Query: 345 FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG 404
            +        +F  F  L+ + L+   L     S++ +   G  +  L+ L LS      
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHL-----SELPSGLVGLST--LKKLVLSANKFEN 315

Query: 405 SLTNQIGKFKVLNSVDLSENSISGQV-PWSLGKLSSLRYLDISNNQLNG-TVSEIHFANL 462
                   F  L  + +  N+   ++    L  L +LR LD+S++ +       +   NL
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 463 SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSG 522
           S L     S N         +    QLE LDL              +   L   D     
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDL--------------AFTRLKVKD----- 416

Query: 523 IVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLA-- 579
                    ++++     L+LS++ +          +  L  L+L  N+           
Sbjct: 417 -----AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 580 ----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
                 + +L LS   LS    H     T+   +   ++L  N L     +   + +  +
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAF---TSLKMM-NHVDLSHNRLTSSSIEALSHLK-GI 526

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGT 671
            L L +N  +  LP+ L  LS  R+++LR N L  T
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (567), Expect = 2e-62
 Identities = 106/682 (15%), Positives = 191/682 (28%), Gaps = 143/682 (20%)

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
                   L+  P       +S   L+ S N    ++  T    L NL FLDL+      
Sbjct: 16  TYNCENLGLNEIPG---TLPNSTECLEFSFNVL-PTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
              DT Q+   L  L L++N   ++    L+    L++L      +   I  + L N  +
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKT 130

Query: 338 IQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397
           ++SL L  N +             L+ +      + +          S        SL+L
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE----DMSSLQQATNLSLNL 186

Query: 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLG--KLSSLRYLDISNNQLNGTVS 455
           +   ++  +        V  S++         +   L    + SL      +      +S
Sbjct: 187 NGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DIS 244

Query: 456 EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVN 515
              F  L  +                       +E ++L+  Y      +  H  + L  
Sbjct: 245 PAVFEGLCEM----------------------SVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQ 574
           LD++ + +   +P+     ++    L LS N+         +    L  L +  N    +
Sbjct: 283 LDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 575 LPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
           L         N+  LDLS + +  S                                   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCC-------------------------------- 368

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
                                L  LS L+SL+L  N        +   C +LE +D+   
Sbjct: 369 ------------------NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750
                      +    + +L L  +            L  L+ L L GN+         +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTN 810
           +                                                     L  L  
Sbjct: 471 SLQT--------------------------------------------------LGRLEI 480

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI 870
           + LS    S       T L+ +  ++LSHN  +    E +  +  +  L+ +SN +   +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 871 PKNTVNLVFLSHFNISYNNLSG 892
           P     L      N+  N L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (561), Expect = 1e-61
 Identities = 108/574 (18%), Positives = 203/574 (35%), Gaps = 50/574 (8%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
                     L  L L+ N    +     L     L+ L     G   +    + N   L
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
           + L L  N++  +    L   +    L+ LD     +  +S   + +    + L L L G
Sbjct: 132 ESLYLGSNHISSI---KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQF-DNSLIATQLYGLCNLVFLDLSDNNFQGPIPDT 282
             ++   P    + +   +L+    Q         +   + +L      D + +   P  
Sbjct: 189 NDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 283 IQNW--TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
            +     S+  ++L  ++F  +     + FS L+ L L++  L    S   L  LS+++ 
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKK 305

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNT 400
           L LS N+ E     S S F +L  +S+ G   + +++           +  L  LDLS+ 
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKG---NTKRLELGTGCLENLEN--LRELDLSHD 360

Query: 401 --TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIH 458
               S     Q+     L S++LS N        +  +   L  LD++  +L    ++  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 459 FANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDI 518
           F NL  L     S + L + +   +  +  L+ L+L                NH    +I
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL--------------QGNHFPKGNI 466

Query: 519 SDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPL 577
                         +++ +   L LS   +     +  T +  +  +DLS N L+     
Sbjct: 467 --------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 578 LASNV--MVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
             S++  + L+L+ N +S  +   +   +    +    NL  N L      C   + +L 
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTI----NLRQNPLDC---TCSNIY-FLE 570

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
             + +  K      T      LLR + L +  LS
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (482), Expect = 4e-51
 Identities = 92/427 (21%), Positives = 153/427 (35%), Gaps = 17/427 (3%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAG-FVGMIPNQIG 158
           +     P     E L  L+   N    +     + S+     L L+  G  +  I     
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLV 218
           + +  Q LN        +  + L     +  L       +D   +S          S+  
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP 278
           + L      +    +   FS L  LDL+      S + + L GL  L  L LS N F+  
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENL 316

Query: 279 IPDTIQNWTSLRHLDLSSNHFS-YLIPEWLNKFSRLEYLSLSSNRLQG-RISSVLLENLS 336
              +  N+ SL HL +  N     L    L     L  L LS + ++     ++ L NLS
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
            +QSL+LS+NE       +F     L  + L+  +L         + F       L+ L+
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV---KDAQSPFQNLHL--LKVLN 431

Query: 397 LSNTTLSGSLTNQIGKFKVLNSVDLSENSISG---QVPWSLGKLSSLRYLDISNNQLNGT 453
           LS++ L  S          L  ++L  N       Q   SL  L  L  L +S   L+  
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS- 490

Query: 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHL 513
           + +  F +L  +     S N LT  ++   +   +   L+L S ++    PS L   +  
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQ 549

Query: 514 VNLDISD 520
             +++  
Sbjct: 550 RTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  179 bits (457), Expect = 9e-48
 Identities = 87/515 (16%), Positives = 153/515 (29%), Gaps = 41/515 (7%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
            E L+ S   L         +   L  +DL+   I      +      L  L ++ N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
             ++E   +   +L   +  +  ++            LE L L S ++            
Sbjct: 95  F-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 512 HLVNLDISDSGIVDTIPNRFWK-SITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
            L  LD  ++ I                  L+L+ N I G  P   + +   +L+     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 571 LSGQLPLLASNVMVLDLSKNKLSGSILHFVCHET---NGTRLTQIINLEDNLLAGEIPDC 627
               +     N  +  L            +             + INL+ +       + 
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
           +  +  L  L L     + +LP+ L  LS L+ L L  N       +S  N   L  + I
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFH--GVFPLELCHLAFLKILVLAGNNLSGTI 745
             N     +     E    +  L L  +         L+L +L+ L+ L L+ N      
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 746 PTCISNFTAMAT-FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAV 804
                    +    L    +      S F                               
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQN----------------------------- 423

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA---MALLESLDF 861
           L LL  ++LS++            L  L+ LNL  N F     +   +   +  LE L  
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 862 SSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD 896
           S   L         +L  ++H ++S+N L+    +
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (367), Expect = 3e-36
 Identities = 89/493 (18%), Positives = 166/493 (33%), Gaps = 77/493 (15%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
            + +     ++ ++P +L   +S   L+ S N L  T+    F+ L +LTF   +R  + 
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
                 +    +L+ L L +  L     + L     L +L    +GI   I      +  
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQK 129

Query: 537 QFNYLSLSNNQIHG-EIPNLTEVSQLGTLDLSANNLSGQLP-----LLASNVMVLDLSKN 590
               L L +N I   ++P      +L  LD   N +          L  +  + L+L+ N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN--WRYLLVLRLDNNKFTGKL 648
            ++G     +      + + Q +N         I     N   + L +   ++       
Sbjct: 190 DIAG-----IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 649 PTSLGALSL--LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPR 706
           P     L    + S++L+ +        +    + L+ +D+     S  +P+ +      
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLST 302

Query: 707 MIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766
           +  L+L +NKF  +  +   +   L  L + GN     +                     
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-------------------- 342

Query: 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK--FSGEIPA 824
                     G   N                       L  L  +DLS++    S     
Sbjct: 343 ---------TGCLEN-----------------------LENLRELDLSHDDIETSDCCNL 370

Query: 825 EITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT-VNLVFLSHF 883
           ++  L  L+SLNLS+N       E       LE LD +  RL+ +  ++   NL  L   
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 884 NISYNNLSGEVPD 896
           N+S++ L      
Sbjct: 431 NLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  114 bits (288), Expect = 2e-26
 Identities = 61/365 (16%), Positives = 113/365 (30%), Gaps = 33/365 (9%)

Query: 563 TLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLA 621
           T +     L+ ++P  L ++   L+ S N L            N T L    +L    + 
Sbjct: 16  TYNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL----DLTRCQIY 70

Query: 622 GEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681
               D + +   L  L L  N       T+L     L+ L      +S    + L N   
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLA-GNN 740
           LE++ +G N  S ++    G    ++ +L  ++N  H +   ++  L     L L    N
Sbjct: 131 LESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 741 LSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLT 800
               I     +     +     +   +                  F + +   +      
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 801 FKAVLRL-----------------------LTNIDLSNNKFSGEIPAEITVLRELRSLNL 837
               + +                       L  +DL+    S E+P+ +  L  L+ L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 838 SHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV-NLVFLSHFNISYNNLSGEVPD 896
           S N F      +      L  L    N    E+    + NL  L   ++S++++      
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 897 EAQFA 901
             Q  
Sbjct: 369 NLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 98  SALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI 157
                +   +L     L  L LS+ D   I       S+  +  +DLS           +
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 158 GNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
            +L  + YLNL  N++  +       L  LS    ++L  
Sbjct: 521 SHLKGI-YLNLASNHISII---LPSLLPILSQQRTINLRQ 556

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (600), Expect = 1e-66
 Identities = 90/694 (12%), Positives = 183/694 (26%), Gaps = 162/694 (23%)

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP----I 279
                 P +S+ +   +  L L         +   +  L  L  L L  +  +       
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 280 PDTIQNWTSLRHLDLSSNHFSYLIPEWL--NKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
           P  I    S         H+     ++     FS L    ++S+  Q  I          
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRITLK 184

Query: 338 IQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397
              +    N +   + ++  R   LR   +       + + +             E+ + 
Sbjct: 185 DTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAW-----------ENENS 232

Query: 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEI 457
                  +   +    K L  V++       ++P  L  L  ++ ++++ N+        
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 458 HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLD 517
              +  +L                       ++ + +                N+L    
Sbjct: 293 --DDWQALADAPVGEK---------------IQIIYI--------------GYNNLKTFP 321

Query: 518 ISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG---Q 574
           +  S     +       + +   L    NQ+ G++P      +L +L+L+ N ++     
Sbjct: 322 VETS-----LQK-----MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 575 LPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD--CWMNWR 632
                  V  L  + NKL                               IP+     +  
Sbjct: 372 FCGFTEQVENLSFAHNKLK-----------------------------YIPNIFDAKSVS 402

Query: 633 YLLVLRLDNNKFTG-------KLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685
            +  +    N+           L  +      + S++L NN +S          + L +I
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 686 DIGENEFSGNVPAWIGERFPRMI-------ILILRSNKFHGVFP-LELCHLAFLKILVLA 737
           ++  N  +  +P    +              + LR NK   +        L +L  + L+
Sbjct: 463 NLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 738 GNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK 797
            N+ S   PT   N                                         TL+  
Sbjct: 522 YNSFSK-FPTQPLN---------------------------------------SSTLK-- 539

Query: 798 TLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLE 857
                    +    D   N+   E P  IT+   L  L +  N     + E I     + 
Sbjct: 540 ------GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNIS 590

Query: 858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
            LD   N             +    + + Y+   
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (583), Expect = 2e-64
 Identities = 101/736 (13%), Positives = 204/736 (27%), Gaps = 155/736 (21%)

Query: 35  EREALLSFKQDLEDP--------SNRLATWIGDGDCCKWA---GVICDNFTGHVLELHLG 83
           +  AL      L           +   A W  + +   W    GV  ++  G V  L L 
Sbjct: 31  DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLE 89

Query: 84  NPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLD 143
                             G++  A+     L  L L  +  K  +       +      +
Sbjct: 90  G-------------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 144 LSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKV 203
                 +      +       + +L  + +                            + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINS------------------------DPQQ 172

Query: 204 SNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC 263
            +    +        +      ++     +V   + L    + ++ F    I        
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICE------ 225

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
                +               N   L  +++ +      +P +L     ++ ++++ NR 
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
                                  + +W+          ++ I +    L           
Sbjct: 286 IS-----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLK---------- 318

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
                              +  +   + K K L  ++   N + G++P + G    L  L
Sbjct: 319 -------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVFQLEELDLRSCYLGPP 502
           +++ NQ+    +         +     + N L  +    +   V  +  +D         
Sbjct: 359 NLAYNQITEIPANF-CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF-------- 409

Query: 503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQL 561
                 S N + ++   D    D +    +K     + ++LSNNQI        +  S L
Sbjct: 410 ------SYNEIGSV---DGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPL 459

Query: 562 GTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLA 621
            +++L  N L+              + KN L     +F     N   L   I+L  N L 
Sbjct: 460 SSINLMGNMLTE-------------IPKNSLKDENENF----KNTYLL-TSIDLRFNKLT 501

Query: 622 GEIPDCWM-NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN------NNLSGTLPV 674
               D       YL+ + L  N F+   PT     S L+   +RN      N      P 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 675 SLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKIL 734
            +  C  L  + IG N+    V   I    P + +L ++ N    +    +C      + 
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 735 VLAGNNLSGTIPTCIS 750
           +L  +     I  C +
Sbjct: 617 MLFYDKTQ-DIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (489), Expect = 7e-52
 Identities = 86/649 (13%), Positives = 176/649 (27%), Gaps = 125/649 (19%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           L+  + + QG       NW   + LD+            LN   R+  LSL      GR+
Sbjct: 42  LNGKNWSQQGFGTQPGANWNFNKELDMWGA----QPGVSLNSNGRVTGLSLEGFGASGRV 97

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSF-SRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
              +   L+ ++ L L  +  +               S                      
Sbjct: 98  PDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMS---------------------- 134

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGK--FKVLNSVDLSENSISGQVPWSLGKLSSLRYLD 444
                 E           +  +   +  F  L    ++ +     +  S         + 
Sbjct: 135 -----DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 445 ISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFP 504
             +N +      +    L+ L  FY   +                E  +           
Sbjct: 190 QLSNNITFVSKAV--MRLTKLRQFYMGNSPFV-----AENICEAWENENSEYAQQYKTED 242

Query: 505 SWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTL 564
               +   L ++++ +   +  +P      + +   ++++ N+         +   L   
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 565 DLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI 624
            +               + ++ +  N L                               +
Sbjct: 302 PVG------------EKIQIIYIGYNNLKT---------------------------FPV 322

Query: 625 PDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET 684
                  + L +L    N+  G    + G+   L SL+L  N ++       G   ++E 
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV-------FPLELCHLAFLKILVLA 737
           +    N+       +  +    M  +    N+   V                 +  + L+
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 738 GNNLSGTIPTCISNFTAMATF-LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEG 796
            N +S       S  + +++  L  + +  I   S       F N               
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN--------------- 486

Query: 797 KTLTFKAVLRLLTNIDLSNNKFSGEIPAEITV--LRELRSLNLSHNFFSGRIPENIGAMA 854
                     LLT+IDL  NK +  +  +     L  L  ++LS+N FS   P      +
Sbjct: 487 --------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 855 LLESL------DFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
            L+        D   NR   E P+       L+   I  N++   V ++
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (442), Expect = 1e-45
 Identities = 67/512 (13%), Positives = 147/512 (28%), Gaps = 112/512 (21%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           +  + L     SG+VP ++G+L+ L  L + ++             +S+           
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS-------- 134

Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
                         E+      +    F  +   ++                        
Sbjct: 135 -------------DEQKQKMRMHYQKTFVDYDPREDFS---------------------- 159

Query: 536 TQFNYLSLSNNQIHGEIPNLTE-VSQLGTLDLSANNLSGQLPLLA--SNVMVLDLSKNKL 592
                  ++++     I   +    +   +   +NN++     +   + +    +  +  
Sbjct: 160 -DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF 218

Query: 593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSL 652
               +             +  N E           W N + L  + + N     KLPT L
Sbjct: 219 VAENI---------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 653 GALSLLRSLHLRNNNL--------SGTLPVSLGNCTELETIDIGENEF-SGNVPAWIGER 703
            AL  ++ +++  N                      +++ I IG N   +  V   +  +
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-K 328

Query: 704 FPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF-LGSD 762
             ++ +L    N+  G  P        L  L LA N ++            +       +
Sbjct: 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG-- 820
            +  I  P+ F                               + +++ ID S N+     
Sbjct: 388 KLKYI--PNIFDAKS---------------------------VSVMSAIDFSYNEIGSVD 418

Query: 821 -----EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG------- 868
                 +         + S+NLS+N  S    E     + L S++   N L         
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 869 EIPKNTVNLVFLSHFNISYNNLSGEVPDEAQF 900
           +  +N  N   L+  ++ +N L+  + D+ + 
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK-LSDDFRA 509

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 4/103 (3%)

Query: 810 NIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG- 868
           N +   + +  +    +     +  L+L     SGR+P+ IG +  LE L   S+  +  
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 869 ---EIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSY 908
                PK     +          +      D      F     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  222 bits (568), Expect = 1e-62
 Identities = 110/603 (18%), Positives = 203/603 (33%), Gaps = 57/603 (9%)

Query: 102 GKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLS 161
           G +NP +    ++             ++P  + S  + + +DLS      +      N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 162 NLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQL 221
            LQ+L+L    +  +   +    + L  L NL L+G  +   S G    + L SL  L  
Sbjct: 57  ELQWLDLSRCEIETI---EDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLENLVA 111

Query: 222 AGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
              +L+      +    +L  L+++HN   +  +      L NLV +DLS N  Q    +
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

Query: 282 TIQNWTSLR----HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
            +Q           LD+S N   ++  +       L  L+L  N     I    L+NL+ 
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 338 IQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397
           +    L            F    NL     S              I  G     ++   L
Sbjct: 231 LHVHRLILG--------EFKDERNLEIFEPS--------------IMEGLCDVTIDEFRL 268

Query: 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEI 457
           + T        +      ++++ L+  SI       + K    + L I   QL     + 
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK----QF 322

Query: 458 HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLG--PPFPSWLHSQNHLVN 515
              +L  L     + N  ++  +   V +  L  LDL    L             N L +
Sbjct: 323 PTLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSG 573
           LD+S +G    I +  +  + +  +L   ++ +           + +L  LD+S  N   
Sbjct: 381 LDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 574 QLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
               +    +++  L ++ N    + L  V    N T L   ++L    L       +  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNL-TFLDLSKCQLEQISWGVFDT 495

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
              L +L + +N       +    L  L +L    N +  +  +       L   ++  N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 691 EFS 693
             +
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  219 bits (559), Expect = 2e-61
 Identities = 112/678 (16%), Positives = 193/678 (28%), Gaps = 136/678 (20%)

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           +  Q    +LS  P       SS   +DLS N     L +        L +LDLS    +
Sbjct: 14  ITYQCMDQKLSKVPD---DIPSSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIE 69

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
                       L +L L+ N      P   +  + LE L     +L   + S  +  L 
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLI 128

Query: 337 SIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
           +++ L+++ N +   K+P  FS   NL  + LS   +            +      L   
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---------ITVNDLQFLREN 179

Query: 396 DLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVS 455
              N +L                 D+S N I   +     +   L  L +  N  +  + 
Sbjct: 180 PQVNLSL-----------------DMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 456 EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVN 515
           +    NL+ L            + N        +E L                    +  
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL----------------CDVTIDE 265

Query: 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQL 575
             ++ +        +F   +   + +SL+   I   + ++ +  +  +L +    L    
Sbjct: 266 FRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 576 PLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
            L    +  L L+ NK S                              I    +    L 
Sbjct: 324 TLDLPFLKSLTLTMNKGS------------------------------ISFKKVALPSLS 353

Query: 636 VLRLDNNKFTGKLPTSLGALSL--LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693
            L L  N  +     S   L    LR L L  N     +  +     EL+ +D   +   
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLK 412

Query: 694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFT 753
                       +++ L +        F      L  L  L +AGN+             
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD---------- 462

Query: 754 AMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL 813
                               +     F                           LT +DL
Sbjct: 463 --------------------NTLSNVFA----------------------NTTNLTFLDL 480

Query: 814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873
           S  +           L  L+ LN+SHN        +   +  L +LD S NR+E      
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 874 TVNLVFLSHFNISYNNLS 891
                 L+ FN++ N+++
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (539), Expect = 1e-58
 Identities = 93/581 (16%), Positives = 182/581 (31%), Gaps = 40/581 (6%)

Query: 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN 252
                  LSKV   P   +   S   + L+   L      S +NFS L  LDLS  +   
Sbjct: 16  YQCMDQKLSKV---P--DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-E 69

Query: 253 SLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSR 312
           ++     +GL +L  L L+ N  Q   P +    TSL +L       + L    + +   
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
           L+ L+++ N +          NL+++  +DLS+N ++               ++LS + +
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS-LDM 188

Query: 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT-NQIGKFKVLNSVDLSENSISGQV- 430
           S   +  +       +   L  L L     S ++    +     L+   L       +  
Sbjct: 189 SLNPIDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 431 -----PWSLGKLSSLRYLDISNNQLNGT-VSEIHFANLSSLTFFYASRNSLTLKANPNWV 484
                P  +  L  +   +      N      + F  L++++    +  S+      +  
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVP 304

Query: 485 PVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLS 544
             F+ + L +  C L       L     L +L ++ +    +       S++   YL LS
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISFKKVALPSLS---YLDLS 358

Query: 545 NNQIHGEIPNLTE---VSQLGTLDLSANNLSGQLPLLA--SNVMVLDLSKNKLSGSILHF 599
            N +             + L  LDLS N              +  LD   + L       
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT--- 415

Query: 600 VCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTS-LGALSLL 658
                        +++       +    ++    L  L++  N F     ++     + L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 659 RSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH 718
             L L    L             L+ +++  N     + +    +   +  L    N+  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE 534

Query: 719 GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFL 759
               +       L    L  N++      CI        ++
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSV-----ACICEHQKFLQWV 570

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (376), Expect = 2e-37
 Identities = 72/390 (18%), Positives = 132/390 (33%), Gaps = 48/390 (12%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY 172
            +    L+Y +     I +F   + N+  + L+G     +           Q L++    
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQ 318

Query: 173 LGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPL 232
           L      DL +L      ++L L+    S          AL SL  L L+   LS     
Sbjct: 319 LKQFPTLDLPFL------KSLTLTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC 368

Query: 233 SVANF--SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP-DTIQNWTSL 289
           S ++   +SL  LDLS N     +++    GL  L  LD   +  +         +   L
Sbjct: 369 SYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
            +LD+S  +            + L  L ++ N  +    S +  N +++  LDLS  +LE
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ 409
                 F     L+ +++S   L                        L ++  +  L + 
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLF----------------------LDSSHYNQ-LYS- 522

Query: 410 IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
                 L+++D S N I            SL + +++NN +        F         +
Sbjct: 523 ------LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQF 576

Query: 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYL 499
                    A P  +    + + +  +CY+
Sbjct: 577 LVNVEQMTCATPVEMNTSLVLDFNNSTCYM 606

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (353), Expect = 1e-34
 Identities = 93/641 (14%), Positives = 178/641 (27%), Gaps = 188/641 (29%)

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR 322
              +     D      +PD I   +S +++DLS N    L     + FS L++L LS   
Sbjct: 11  VPNITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 323 LQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA 382
           ++  I       L  + +L L+ N ++   P SFS    L S                  
Sbjct: 68  IET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFS---GLTS------------------ 105

Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
                    LE+L                              ++    + +G+L +L+ 
Sbjct: 106 ---------LENLVAVE------------------------TKLASLESFPIGQLITLKK 132

Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPP 502
           L++++N ++      +F+NL++L                          +DL        
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNL------------------------VHVDL-------- 160

Query: 503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLG 562
                 S N++         I         ++      L +S N I        +  +L 
Sbjct: 161 ------SYNYI-------QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 563 TLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDN 618
            L L  N  S  +        + + V  L   +                    +   E +
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD--------------ERNLEIFEPS 253

Query: 619 LLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGN 678
           ++ G      +    +   RL               L+ + ++ L   ++       +  
Sbjct: 254 IMEG------LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPK 305

Query: 679 CTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAG 738
             + +++ I   +             P +  L L  NK       +   L  L  L L+ 
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359

Query: 739 NNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKT 798
           N LS +     S+                                               
Sbjct: 360 NALSFSGCCSYSDLG--------------------------------------------- 374

Query: 799 LTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN-IGAMALLE 857
                    L ++DLS N     + A    L EL+ L+  H+        +   ++  L 
Sbjct: 375 ------TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEA 898
            LD S    + +     + L  L+   ++ N+         
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 4e-19
 Identities = 62/372 (16%), Positives = 108/372 (29%), Gaps = 38/372 (10%)

Query: 550 GEIPNLTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTR 608
           G +    EV    T       LS ++P  + S+   +DLS N L     +   + +    
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 609 LT--------------------QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL 648
           L                       + L  N +    P  +     L  L     K     
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 649 PTSLGALSLLRSLHLRNNNLSG-TLPVSLGNCTELETIDIGENEFSGNVPAWIG---ERF 704
              +G L  L+ L++ +N +    LP    N T L  +D+  N         +    E  
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 705 PRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSI 764
              + L +  N    +       +  L  L L GN  S  I        A          
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 765 YTIQYPSDFSFPGKFFNITEQFVEEEL----ITLEGKTLTFKAVLRLLTNIDLSNNKFSG 820
                 +   F             +E            +     L  ++ + L+      
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 821 EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFL 880
               ++    + +SL++           +   +  L+SL  + N+    I    V L  L
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGS--ISFKKVALPSL 352

Query: 881 SHFNISYNNLSG 892
           S+ ++S N LS 
Sbjct: 353 SYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 4e-12
 Identities = 31/152 (20%), Positives = 44/152 (28%), Gaps = 29/152 (19%)

Query: 100 LVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
                +   L    L  L ++ N FK   +     +  NL FLDLS      +       
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL 219
           L  LQ LN+  N L  L   D      L  L  LD S                       
Sbjct: 496 LHRLQLLNMSHNNLLFL---DSSHYNQLYSLSTLDCS----------------------- 529

Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFD 251
                ++     +      SL   +L++N   
Sbjct: 530 ---FNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (542), Expect = 5e-62
 Identities = 76/317 (23%), Positives = 124/317 (39%), Gaps = 47/317 (14%)

Query: 617 DNLLAGEIPDCWMNWRYLLVLRLDNNKFTG--KLPTSLGALSLLRSLHLRN-NNLSGTLP 673
           +    G + D       +  L L          +P+SL  L  L  L++   NNL G +P
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 674 VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKI 733
            ++   T+L  + I     SG +P ++  +   ++ L    N   G  P  +  L  L  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 734 LVLAGNNLSGTIPTCISNFTAMATFLG------SDSIYTIQYPSDFSFPGKFFNITEQFV 787
           +   GN +SG IP    +F+ + T +       +  I           P  F N+     
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-----------PPTFANLN---- 198

Query: 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847
                               L  +DLS N   G+        +  + ++L+ N  +  + 
Sbjct: 199 --------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSS 907
           + +G    L  LD  +NR+ G +P+    L FL   N+S+NNL GE+P       FD S+
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 908 YIGDEYLCGPVLKKLCT 924
           Y  ++ LCG  L   CT
Sbjct: 298 YANNKCLCGSPLPA-CT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (489), Expect = 9e-55
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 53/345 (15%)

Query: 31  CVESEREALLSFKQDLEDPSNRLATWIGDGDCC--KWAGVICDNFT--GHVLELHLGNPW 86
           C   +++ALL  K+DL +P+  L++W+   DCC   W GV+CD  T    V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 87  EDDHGHQAKESSALVGKINPALLDFEHLIYLNLS-YNDFKGIQIPRFLGSMGNLRFLDLS 145
                     +      I  +L +  +L +L +   N+  G  IP  +  +  L +L ++
Sbjct: 60  ---------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYIT 109

Query: 146 GAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSN 205
                G IP+ +  +  L  L+   N L G     +     L  L  +   G  +S    
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS---SLPNLVGITFDGNRIS---- 162

Query: 206 GPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT-LDLSHNQFDNSLIATQLYGLCN 264
           G +                      P S  +FS L T + +S N+    +  T  +   N
Sbjct: 163 GAI----------------------PDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLN 198

Query: 265 LVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
           L F+DLS N  +G       +  + + + L+ N  ++ + + +     L  L L +NR+ 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

Query: 325 GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
           G +    L  L  + SL++SFN L  +IP+           + + 
Sbjct: 258 GTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  168 bits (427), Expect = 2e-46
 Identities = 68/263 (25%), Positives = 108/263 (41%), Gaps = 17/263 (6%)

Query: 213 LRSLLVLQLAGCQLS--HFPPLSVANFSSLVTLDLSHNQFDNSL---IATQLYGLCNLVF 267
              +  L L+G  L   +  P S+AN   L  L +      N+L   I   +  L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---NNLVGPIPPAIAKLTQLHY 105

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           L ++  N  G IPD +    +L  LD S N  S  +P  ++    L  ++   NR+ G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGC 387
                       S+ +S N L  KIP +F+   NL  + LS   L          +F   
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLE----GDASVLFGSD 220

Query: 388 VSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISN 447
            +   + + L+  +L+  L  ++G  K LN +DL  N I G +P  L +L  L  L++S 
Sbjct: 221 KN--TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 448 NQLNGTV-SEIHFANLSSLTFFY 469
           N L G +    +        +  
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (387), Expect = 5e-41
 Identities = 74/344 (21%), Positives = 126/344 (36%), Gaps = 70/344 (20%)

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ--VPWSLGKLSSLRYLDISN-NQ 449
            + D  N T  G L +   +   +N++DLS  ++     +P SL  L  L +L I   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 450 LNGTV-SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508
           L G +   I  A L+ L + Y +  +++                       G   P +L 
Sbjct: 89  LVGPIPPAI--AKLTQLHYLYITHTNVS-----------------------GA-IPDFLS 122

Query: 509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLS 567
               +  L                        L  S N + G +P +++ +  L  +   
Sbjct: 123 Q---IKTL----------------------VTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 568 ANNLSGQLPL----LASNVMVLDLSKNKLSGSILHFVCHETNGTRLT-QIINLEDNLLAG 622
            N +SG +P      +     + +S+N+L+G I     +      L    ++L  N+L G
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------LNLAFVDLSRNMLEG 211

Query: 623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTEL 682
           +    + + +    + L  N     L   +G    L  L LRNN + GTLP  L     L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELC 726
            ++++  N   G +P   G    R  +    +NK     PL  C
Sbjct: 271 HSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (383), Expect = 2e-40
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 16/252 (6%)

Query: 504 PSWLHSQNHLVNLDISDSGI--VDTIPNRFWKSITQFNYLSLSN-NQIHGEIPN-LTEVS 559
                    + NLD+S   +     IP+     +   N+L +   N + G IP  + +++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 560 QLGTLDLSANNLSGQLPL---LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE 616
           QL  L ++  N+SG +P        ++ LD S N LSG++   +    +   L  I   +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS---SLPNLVGI-TFD 157

Query: 617 DNLLAGEIPDCWMNWRYLL-VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVS 675
            N ++G IPD + ++  L   + +  N+ TGK+P +   L+L   + L  N L G   V 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVL 216

Query: 676 LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILV 735
            G+    + I + +N  + ++          +  L LR+N+ +G  P  L  L FL  L 
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 736 LAGNNLSGTIPT 747
           ++ NNL G IP 
Sbjct: 275 VSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (374), Expect = 2e-39
 Identities = 62/350 (17%), Positives = 119/350 (34%), Gaps = 74/350 (21%)

Query: 503 FPSWLHSQNHLVN----LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEV 558
               L +   L +     D  +   +  + +   ++  + N L LS   +    P  + +
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSL 72

Query: 559 ---SQLGTLDLS-ANNLSGQLPL-LA--SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQ 611
                L  L +   NNL G +P  +A  + +  L ++   +SG+I  F+   +    L  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL---SQIKTL-V 128

Query: 612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL-SLLRSLHLRNNNLSG 670
            ++   N L+G +P    +   L+ +  D N+ +G +P S G+   L  S+ +  N L+G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 671 TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAF 730
            +P +  N   L  +D+  N   G+     G        + L  N        ++     
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKN 245

Query: 731 LKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEE 790
           L  L L  N + GT+P  ++    + +                                 
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSL-------------------------------- 273

Query: 791 LITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN 840
                                ++S N   GEIP +   L+       ++N
Sbjct: 274 ---------------------NVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (291), Expect = 2e-28
 Identities = 50/257 (19%), Positives = 83/257 (32%), Gaps = 82/257 (31%)

Query: 647 KLPTSLGALSLLRS----LHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGE 702
           ++   LG  + L S        N    G L  +      +  +D+         P     
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----- 67

Query: 703 RFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAG-NNLSGTIPTCISNFTAMATFLGS 761
                              P  L +L +L  L + G NNL G IP  I+           
Sbjct: 68  ------------------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK---------- 99

Query: 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE 821
                                                      L  L  + +++   SG 
Sbjct: 100 -------------------------------------------LTQLHYLYITHTNVSGA 116

Query: 822 IPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLS 881
           IP  ++ ++ L +L+ S+N  SG +P +I ++  L  + F  NR+ G IP +  +   L 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 882 -HFNISYNNLSGEVPDE 897
               IS N L+G++P  
Sbjct: 177 TSMTISRNRLTGKIPPT 193

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  213 bits (543), Expect = 1e-57
 Identities = 106/638 (16%), Positives = 198/638 (31%), Gaps = 106/638 (16%)

Query: 126 GIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLY 185
           G Q    L + G +  L L+G G  G +P+ IG L+ L+ L+   +              
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL----FG 367

Query: 186 DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDL 245
           D  L  ++        ++    +  +  + L +  L    ++  P +          + L
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK--PIKKDSRISL 425

Query: 246 SHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPE 305
              Q  N                     N    I   IQ  T L+ +  +++ F+Y    
Sbjct: 426 KDTQIGNL-------------------TNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 306 WLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSI 365
                   E  +    +           NL  +  ++L       ++P        L+S+
Sbjct: 467 -----VDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 366 SLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
           +++  +                       L    T     L +       +    +  N+
Sbjct: 521 NIACNRGIS-----------------AAQLKADWT----RLADDEDTGPKIQIFYMGYNN 559

Query: 426 ISG-QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-----LKA 479
           +       SL K+  L  LD  +N++   +    F     LT      N +        A
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLEA--FGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 480 NPNWVPVFQLEELDLRSCYL-GPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQF 538
             +     Q+E L      L   P      S   + ++D S + I  +       S+  +
Sbjct: 617 FTD-----QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDY 670

Query: 539 N-----YLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL 592
                  ++LS N+I           S + T+ LS N ++              + +N L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-------------SIPENSL 717

Query: 593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM--NWRYLLVLRLDNNKFTGKLPT 650
                ++     N   L   I+L  N L   + D +      YL  + +  N F+   PT
Sbjct: 718 KPKDGNY----KNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 651 SLGALSLLRSLHLR------NNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERF 704
                S L++  +R       N +    P  +  C  L  + IG N+    V   +    
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL---T 826

Query: 705 PRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
           P++ IL +  N    +    +C      + VL  +   
Sbjct: 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (536), Expect = 8e-57
 Identities = 78/677 (11%), Positives = 181/677 (26%), Gaps = 122/677 (18%)

Query: 230 PPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
             +   N++    LD+  +Q         L     +  L L+    +G +PD I   T L
Sbjct: 295 NTIHSLNWNFNKELDMWGDQ-----PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTEL 349

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
           + L   ++  +     + ++    +      +R++     + L+    +   DL  + + 
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409

Query: 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ 409
                   +  +  S+  + I     +++ +           L+ +  +N+  +      
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK--LQIIYFANSPFTY----- 462

Query: 410 IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
                     +            S   L  L  +++ N      + +    +L  L    
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521

Query: 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPN 529
            + N                 +L      L         +   +    +  + + +   +
Sbjct: 522 IACNRGI-----------SAAQLKADWTRL----ADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 530 RFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG---QLPLLASNVMVLD 586
              + + +   L   +N++   +       +L  L L  N +             V  L 
Sbjct: 567 ASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC-----WMNWRYLLVLRLDN 641
            S NKL    +  + +  +   +   ++   N +  E  +               + L  
Sbjct: 626 FSHNKLKY--IPNIFNAKSVYVM-GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 642 NKFTGKLPTSLGALSLLRSLHLRNNNLS-------GTLPVSLGNCTELETIDIGENEFSG 694
           N+            S + ++ L NN ++            +  N   L TID+  N+ + 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 695 NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTA 754
            +                               L +L  + ++ N  S + PT   N + 
Sbjct: 743 -LSDDFR-----------------------ATTLPYLSNMDVSYNCFS-SFPTQPLNSSQ 777

Query: 755 MATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLS 814
           +                                                   +    D  
Sbjct: 778 LK-----------------------------------------------AFGIRHQRDAE 790

Query: 815 NNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT 874
            N+   + P  IT    L  L +  N     + E +     L  LD + N        + 
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSV 847

Query: 875 VNLVFLSHFNISYNNLS 891
              +    + + Y+   
Sbjct: 848 CPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (532), Expect = 3e-56
 Identities = 81/621 (13%), Positives = 186/621 (29%), Gaps = 93/621 (14%)

Query: 41  SFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFT--GHVLELHLGNPWEDDHGHQAKESS 98
            +     + +     W  + +   W      +    G V  L L                
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG-------------F 333

Query: 99  ALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG 158
              G++  A+     L  L+   +             +      +      +      + 
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNG----PLVTNALR 214
               L   +L  + +          +  +     + L    +  ++N           L 
Sbjct: 394 YDQRLNLSDLLQDAINRNPE-----MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
            L ++  A    ++               +  + +   +   +    L +L  ++L +  
Sbjct: 449 KLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCP 502

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYL---------IPEWLNKFSRLEYLSLSSNRLQG 325
               +PD + +   L+ L+++ N              + +  +   +++   +  N L+ 
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG---------------- 369
             +S  L+ +  +  LD   N++  +   +F     L  + L                  
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 370 ---IQLSHQKVSQVLAIFSGCVSDVLESLDLSN---TTLSGSLTNQIGKFKVLN--SVDL 421
              +  SH K+  +  IF+     V+ S+D S     +   +++  +  +K +N  +V L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 422 SENSISGQVPWSLGKLSSLRYLDISNNQL------NGTVSEIHFANLSSLTFFYASRNSL 475
           S N I           S +  + +SNN +      +    + ++ N   LT      N L
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 476 T-LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
           T L  +     +  L  +D+        FP+   + + L    I                
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR--------------- 784

Query: 535 ITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLS 593
               +      N+I  + P  +T    L  L + +N++      L   + +LD++ N   
Sbjct: 785 ----HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840

Query: 594 GSILHFVCHETNGTRLTQIIN 614
              +  VC          + +
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  177 bits (451), Expect = 5e-46
 Identities = 87/653 (13%), Positives = 189/653 (28%), Gaps = 155/653 (23%)

Query: 268 LDLSDNNFQGPIPDTIQ---NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
           LD  +  +     +      NW   + LD+  +         L+   R+  LSL+    +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGD----QPGVDLDNNGRVTGLSLAGFGAK 336

Query: 325 GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIF 384
           GR+   +   L+ ++ L    +           R      ++    +    ++       
Sbjct: 337 GRVPDAI-GQLTELKVLSFGTHSE-----TVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 385 SGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG------QVPWSLGKLS 438
                  L   DL    ++ +   ++   K  + + L +  I         +  ++ +L+
Sbjct: 391 FLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 439 SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCY 498
            L+ +  +N+        + + + +S          L+     +      L +++L +C 
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD------LTDVELYNCP 502

Query: 499 LGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEV 558
                P +L+    L +L+I+         NR          L     ++  +       
Sbjct: 503 NMTQLPDFLYDLPELQSLNIAC--------NR----GISAAQLKADWTRLADDEDTGP-- 548

Query: 559 SQLGTLDLSANNLSGQLPLLA-----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQII 613
            ++    +  NNL    P  A       + +LD   NK+                     
Sbjct: 549 -KIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-------------------- 586

Query: 614 NLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA-LSLLRSLHLRNNNLSGTL 672
                     +   +     L  L+LD N+    +P    A    +  L   +N L   +
Sbjct: 587 ---------HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YI 634

Query: 673 P--VSLGNCTELETIDIGENEFSGNVPAWIGE----RFPRMIILILRSNKFHGVFPLELC 726
           P   +  +   + ++D   N+               +      + L  N+          
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 727 HLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQF 786
             + +  ++L+ N ++                       +I   S     G + N     
Sbjct: 695 TGSPISTIILSNNLMT-----------------------SIPENSLKPKDGNYKN----- 726

Query: 787 VEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITV--LRELRSLNLSHNFFSG 844
                               LLT IDL  NK +  +  +     L  L ++++S+N FS 
Sbjct: 727 ------------------TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 845 RIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
             P      + L++      R                  +   N +  + P  
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  142 bits (360), Expect = 6e-35
 Identities = 67/539 (12%), Positives = 152/539 (28%), Gaps = 93/539 (17%)

Query: 390 DVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
            + E+LD  N        N        N  +   +    Q    L     +  L ++   
Sbjct: 276 AIWEALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFG 334

Query: 450 LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR----SCYLGPPFPS 505
             G V +     L+ L       +S T+            +  + R      +    F  
Sbjct: 335 AKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 506 WLHSQNHLVNLDISDSGIVDTIPNRFWKSI-TQFNYLSLSNNQIHGEIPNLTEVSQLGTL 564
           +    N    L  + +   +  P +    I  +   +    N+I      +  +++L  +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 565 DLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI 624
             + +  +     +       +    K   +      +  + T +     L +     ++
Sbjct: 454 YFANSPFTYDNIAVDWED--ANSDYAKQYENEELSWSNLKDLTDV----ELYNCPNMTQL 507

Query: 625 PDCWMNWRYLLVLRLDNNKFTG---------KLPTSLGALSLLRSLHLRNNNLSG-TLPV 674
           PD   +   L  L +  N+            +L         ++  ++  NNL       
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 675 SLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKIL 734
           SL    +L  +D   N+   ++ A+      ++  L L  N+   +          ++ L
Sbjct: 568 SLQKMVKLGLLDCVHNKVR-HLEAF--GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 735 VLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL 794
             + N L                                  P  F   +           
Sbjct: 625 GFSHNKLK-------------------------------YIPNIFNAKS----------- 642

Query: 795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE------LRSLNLSHNFFSGRIPE 848
                     + ++ ++D S NK        I+   +        ++ LS+N       E
Sbjct: 643 ----------VYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 849 NIGAMALLESLDFSSNRLE-------GEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQF 900
                + + ++  S+N +             N  N   L+  ++ +N L+  + D+ + 
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA 749

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (313), Expect = 3e-29
 Identities = 49/288 (17%), Positives = 87/288 (30%), Gaps = 26/288 (9%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPN--QIGNLSNL 163
            A      L  L L YN  + I    F      +  L  S       IPN     ++  +
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM 646

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSL--LENLDLSGVDLSKVSNGPLVTNALRSLLVLQL 221
             ++   N +G         + D        + LS  ++ K      +      +  + L
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP--TELFATGSPISTIIL 704

Query: 222 AGCQLSHFP-------PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           +   ++  P         +  N   L T+DL  N+  +     +   L  L  +D+S N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 275 FQGPIPDTIQNWTSLRHLDL------SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRIS 328
           F    P    N + L+   +        N      P  +     L  L + SN ++  + 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

Query: 329 SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQK 376
             L   L     LD++ N        S   +       L   +    +
Sbjct: 823 EKLTPQL---YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 3e-22
 Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 22/274 (8%)

Query: 640 DNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAW 699
           + + +  +    L     +  L L      G +P ++G  TEL+ +  G +  + +   +
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 700 IGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG---TIPTCISNFTAMA 756
             E     +    +         + L +   L +  L  + ++      P    +  ++ 
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 757 TFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNN 816
                +    I              +T+     ++I       T+  +     + +    
Sbjct: 427 DTQIGNLTNRIT-----FISKAIQRLTKL----QIIYFANSPFTYDNIAVDWEDANSDYA 477

Query: 817 KFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG-------- 868
           K         + L++L  + L +     ++P+ +  +  L+SL+ + NR           
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 869 -EIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFA 901
             +  +      +  F + YNNL  E P  A   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  205 bits (522), Expect = 4e-55
 Identities = 114/581 (19%), Positives = 203/581 (34%), Gaps = 48/581 (8%)

Query: 191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQF 250
                   +L++V         L +   L L+   +      S      L  L+L     
Sbjct: 7   RIAFYRFCNLTQVPQV------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 251 DNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFS--YLIPEWLN 308
             ++       L NL  LDL  +      PD  Q    L  L L     S   L   +  
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 309 KFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS--RFCNLRSIS 366
               L  L LS N+++          L+S++S+D S N++           +   L   S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN------------TTLSGSLTNQIGKFK 414
           L+   L  +         +   + VLE LD+S               +S S    +    
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 415 VLNSVDLSENSISGQVPWSLGKL--SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR 472
            +       ++I      +   L  SS+R+LD+S+  +  +++   F  L  L     + 
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAY 299

Query: 473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFW 532
           N +   A+  +  +  L+ L+L    LG  + S  +    +  +D+  + I   I ++ +
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTF 358

Query: 533 KSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL 592
           K + +   L L +N +      +  +  +  + LS N L   LP +     ++ LS+N+L
Sbjct: 359 KFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRL 413

Query: 593 SG-SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRY-LLVLRLDNNKFTGKLPT 650
               IL+F+    +     QI+ L  N  +    D   +    L  L L  N       T
Sbjct: 414 ENLDILYFLLRVPH----LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 651 SLGA-----LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFP 705
            L       LS L+ L+L +N L+   P    + T L  + +  N  +      +     
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---PA 526

Query: 706 RMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
            + IL +  N+     P        L +L +  N       
Sbjct: 527 NLEILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  195 bits (497), Expect = 8e-52
 Identities = 116/559 (20%), Positives = 211/559 (37%), Gaps = 44/559 (7%)

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLV 218
            L+  + L L  NY+  +          L  L+ L+L         +       L +L +
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFP---FLEQLQLLELGSQYTPLTID-KEAFRNLPNLRI 77

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQ-LYGLCNLVFLDLSDNNFQG 277
           L L   ++    P +      L  L L      ++++       L  L  LDLS N  + 
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 278 -PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFS--RLEYLSLSSNRLQGRISSVLLEN 334
             +  +     SL+ +D SSN    +    L       L + SL++N L  R+S    + 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 335 LS-----SIQSLDLSFNELEWKIPRSFSRFCNLRSI-------SLSGIQLSHQKVSQV-L 381
           ++      ++ LD+S N     I  +FS   +            + G       +     
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLR 441
             F+G     +  LDLS+  +    +      K L  ++L+ N I+     +   L +L+
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 442 YLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP 501
            L++S N L   +   +F  L  + +    +N + +  +  +  + +L+ LDLR   L  
Sbjct: 318 VLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-- 374

Query: 502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG--EIPNLTEVS 559
              + +H    + ++ +S + +V T+P     +    N + LS N++     +  L  V 
Sbjct: 375 ---TTIHFIPSIPDIFLSGNKLV-TLPKINLTA----NLIHLSENRLENLDILYFLLRVP 426

Query: 560 QLGTLDLSANNLSG----QLPLLASNVMVLDLSKNKLSGSILHFVCHET-NGTRLTQIIN 614
            L  L L+ N  S     Q P    ++  L L +N L  +    +C +   G    Q++ 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 615 LEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPV 674
           L  N L    P  + +   L  L L++N+ T      L   + L  L +  N L      
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLA---P 541

Query: 675 SLGNCTELETIDIGENEFS 693
           +      L  +DI  N+F 
Sbjct: 542 NPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  182 bits (463), Expect = 1e-47
 Identities = 87/495 (17%), Positives = 176/495 (35%), Gaps = 54/495 (10%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLS--NLQ 164
              + + L  L+LS N  + + +    G + +L+ +D S      +  +++  L    L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           + +L  N L       + W   ++   N+ L  +D+S       +T    +         
Sbjct: 178 FFSLAANSL--YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA-------- 227

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC--NLVFLDLSDNNFQGPIPDT 282
            +S     S+     ++      +            GL   ++  LDLS           
Sbjct: 228 -ISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
            +    L+ L+L+ N  + +  E       L+ L+LS N L   + S     L  +  +D
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344

Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
           L  N +     ++F     L+++ L    L+               S  +  + LS   L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT---------IHFIPS--IPDIFLSGNKL 393

Query: 403 SGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFAN 461
                  +      N + LSEN +    + + L ++  L+ L ++ N+ +    +   + 
Sbjct: 394 VTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 462 LSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDS 521
             SL   +   N L L                                 +HL  L ++ +
Sbjct: 450 NPSLEQLFLGENMLQLAWETE-------------------LCWDVFEGLSHLQVLYLNHN 490

Query: 522 GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN 581
            + +++P   +  +T    LSL++N++   + +    + L  LD+S N L    P +  +
Sbjct: 491 YL-NSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVS 548

Query: 582 VMVLDLSKNKLSGSI 596
           + VLD++ NK     
Sbjct: 549 LSVLDITHNKFICEC 563

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (415), Expect = 1e-41
 Identities = 90/505 (17%), Positives = 160/505 (31%), Gaps = 42/505 (8%)

Query: 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLG-SMGNLRFLDLSGAGFVGMIPNQIGNLS 161
            ++P+      L  ++ S N    +            L F  L+       +    G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 162 N------LQYLNLRPNYL---------GGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNG 206
           N      L+ L++  N             +       L     +        ++      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 207 PLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV 266
                A  S+  L L+   +             L  L+L++N+  N +     YGL NL 
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQ 317

Query: 267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR 326
            L+LS N               + ++DL  NH + +  +      +L+ L L  N L   
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT- 376

Query: 327 ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
                +  + SI  + LS N    K+            I LS  +L +  +   L     
Sbjct: 377 -----IHFIPSIPDIFLSGN----KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 387 CVSDVLESLDLSNTTLSGSLTNQI-GKFKVLNSVDLSENSISGQV-----PWSLGKLSSL 440
                L+ L L+    S    +Q   +   L  + L EN +               LS L
Sbjct: 428 -----LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 441 RYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLG 500
           + L +++N LN ++    F++L++L     + N LT     +      LE LD+    L 
Sbjct: 483 QVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLL 539

Query: 501 PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQ 560
            P P    S + L           +      W + T         +       + + VS 
Sbjct: 540 APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS- 598

Query: 561 LGTLDLSANNLSGQLPLLASNVMVL 585
           L +L     +    L  L  ++ ++
Sbjct: 599 LFSLSTEGCDEEEVLKSLKFSLFIV 623

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (361), Expect = 5e-35
 Identities = 112/633 (17%), Positives = 190/633 (30%), Gaps = 157/633 (24%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
                 N    +P  +    +   L LS N+   +         +L+ L L S      I
Sbjct: 9   AFYRFCNLTQ-VPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGC 387
                 NL +++ LDL  +++ +  P +F    +L  + L    LS   +      F   
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNL 122

Query: 388 VSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISN 447
            +  L  LDLS         NQI    +                 S GKL+SL+ +D S+
Sbjct: 123 KA--LTRLDLSK--------NQIRSLYL---------------HPSFGKLNSLKSIDFSS 157

Query: 448 NQLNGTVSEIHFANLS--SLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPS 505
           NQ+   V E     L   +L+FF  + NSL  + + +W                      
Sbjct: 158 NQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN------------- 203

Query: 506 WLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLD 565
                  L  LD+S +G    I   F  +I++    SL                 +    
Sbjct: 204 -----MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA------------HHIMGAG 246

Query: 566 LSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP 625
              +N+              D  +N  +G                               
Sbjct: 247 FGFHNIK-------------DPDQNTFAG------------------------------- 262

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685
              +    +  L L +             L  L+ L+L  N ++     +      L+ +
Sbjct: 263 ---LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI 745
           ++  N     + +      P++  + L+ N    +       L  L+ L L  N L    
Sbjct: 320 NLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
            T I    ++     S +                          +L+TL    LT     
Sbjct: 375 -TTIHFIPSIPDIFLSGN--------------------------KLVTLPKINLT----- 402

Query: 806 RLLTNIDLSNNKFSG-EIPAEITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSS 863
                I LS N+    +I   +  +  L+ L L+ N FS    +        LE L    
Sbjct: 403 --ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 864 NRLEGEIPKNTVNLVF-----LSHFNISYNNLS 891
           N L+          VF     L    +++N L+
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  136 bits (345), Expect = 4e-33
 Identities = 84/431 (19%), Positives = 153/431 (35%), Gaps = 34/431 (7%)

Query: 97  SSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLG-SMGNLRFLDLSGAGFVGMIPN 155
           S+A+      +L+   H++     +++ K      F G +  ++R LDLS      +   
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284

Query: 156 QIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRS 215
               L +L+ LNL  N +  +        Y L  L+ L+LS   L ++ +       L  
Sbjct: 285 VFETLKDLKVLNLAYNKINKI---ADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPK 339

Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
           +  + L    ++     +      L TLDL  N        T ++ + ++  + LS N  
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNK- 392

Query: 276 QGPIPDTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
              +    +   +   + LS N    L I  +L +   L+ L L+ NR            
Sbjct: 393 ---LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 335 LSSIQSLDLSFNELEWKI-----PRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVS 389
             S++ L L  N L+           F    +L+ + L+   L+         +FS   +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG----VFSHLTA 505

Query: 390 DVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
             L  L L++  L+    N +     L  +D+S N +    P       SL  LDI++N+
Sbjct: 506 --LRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV---FVSLSVLDITHNK 558

Query: 450 LNGTVSEIHFANLSSLTFFYASRNSLTLK-ANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508
                    F N  + T    +     +    P+      L  L    C       S   
Sbjct: 559 FICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKF 618

Query: 509 SQNHLVNLDIS 519
           S   +  + ++
Sbjct: 619 SLFIVCTVTLT 629

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSS 863
           L     + LS N       +    L +L+ L L   +    I +     +  L  LD  S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 864 NRLEGEIPKNT-VNLVFLSHFNISYNNLSGEVPDEAQFA 901
           +++   +  +    L  L    + +  LS  V  +  F 
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  187 bits (477), Expect = 1e-50
 Identities = 96/518 (18%), Positives = 169/518 (32%), Gaps = 49/518 (9%)

Query: 237 FSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSS 296
             S   LDLS N     L +   +    L  LDLS    Q       Q+ + L  L L+ 
Sbjct: 27  PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 297 NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL-EWKIPRS 355
           N    L     +  S L+ L      L   + +  + +L +++ L+++ N +  +K+P  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 356 FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKV 415
           FS   NL  + LS  ++                  VL  + L N +L             
Sbjct: 145 FSNLTNLEHLDLSSNKIQS---------IYCTDLRVLHQMPLLNLSL------------- 182

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTF------FY 469
               DLS N ++  +     K   L  L + NN  +  V +     L+ L         +
Sbjct: 183 ----DLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNL---DISDSGIVDT 526
            +  +L          +  L   + R  YL       +   N L N+    +    I   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 527 IPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVL 585
               +         ++    Q             L  L  ++N        +   ++  L
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLK-----SLKRLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645
           DLS+N LS         +   T L + ++L  N +   +   ++    L  L   ++   
Sbjct: 353 DLSRNGLS-FKGCCSQSDFGTTSL-KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 646 GKLPTS-LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERF 704
                S   +L  L  L + + +            + LE + +  N F  N    I    
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 705 PRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
             +  L L   +   + P     L+ L++L +A N L 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  178 bits (453), Expect = 1e-47
 Identities = 120/505 (23%), Positives = 194/505 (38%), Gaps = 46/505 (9%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
                 L+LS+N  + +       S   L+ LDLS      +      +LS+L  L L  
Sbjct: 27  PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
           N +  L    LG    LS L+ L     +L+ + N P+    L++L  L +A   +  F 
Sbjct: 86  NPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFK 140

Query: 231 -PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNL----VFLDLSDNNFQGPIPDTIQN 285
            P   +N ++L  LDLS N+   S+  T L  L  +    + LDLS N     I      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 286 WTSLRHLDLSSNHFSYLIPE-WLNKFSRLEYLSLSSNRLQG-----RISSVLLENLSSIQ 339
              L  L L +N  S  + +  +   + LE   L     +      +     LE L ++ 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 340 SLDLSFNELEW---KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
             +     L++    I   F+   N+ S SL  + +          +     +   + L+
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLE 310

Query: 397 LSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG-TVS 455
           L N       T ++   K L     + N        S   L SL +LD+S N L+     
Sbjct: 311 LVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 456 EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP-PFPSWLHSQNHLV 514
                  +SL +   S N +    + N++ + QLE LD +   L      S   S  +L+
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 515 NLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLS 572
            LDIS +       N  +  ++    L ++ N           TE+  L  LDLS   L 
Sbjct: 425 YLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 573 GQLPLLA----SNVMVLDLSKNKLS 593
            QL   A    S++ VL+++ N+L 
Sbjct: 484 -QLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (421), Expect = 2e-43
 Identities = 90/505 (17%), Positives = 179/505 (35%), Gaps = 35/505 (6%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
           A     HL  L L+ N  + +        + +L+ L         +    IG+L  L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPL--VTNALRSLLVLQLAGC 224
           N+  N +    + +     +L+ LE+LDLS   +  +    L  +       L L L+  
Sbjct: 130 NVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL------SDNNFQGP 278
            ++   P +      L  L L +N    +++ T + GL  L    L      ++ N +  
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 279 IPDTIQNWTSLRHLDLSSNH---FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
               ++   +L   +    +   +   I +  N  + +   SL S  ++           
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
             ++ ++  F +          +  +L+ ++ +  +  +              S  LE L
Sbjct: 307 QHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGN------AFSEVDLPS--LEFL 352

Query: 396 DLSNTTLS--GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
           DLS   LS  G  +        L  +DLS N +   +  +   L  L +LD  ++ L   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW-LHSQNH 512
                F +L +L +   S     +  N  +  +  LE L +        F         +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNL 571
           L  LD+S   + + +    + S++    L++++NQ+          ++ L  + L  N  
Sbjct: 472 LTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 572 SGQLPLLASNVMVLDLSKNKLSGSI 596
               P +      L+ +  K  GS 
Sbjct: 531 DCSCPRIDYLSRWLNKNSQKEQGSA 555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  143 bits (362), Expect = 6e-36
 Identities = 74/365 (20%), Positives = 131/365 (35%), Gaps = 24/365 (6%)

Query: 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMI------PNQ 156
            I P       L  L L  N      +   +  +  L    L    F           + 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 157 IGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSL 216
           +  L NL     R  YL     + +     L+ + +  L  V + +V +           
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGW 306

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN--N 274
             L+L  C+   FP L      SL  L  + N+  N+        L +L FLDLS N  +
Sbjct: 307 QHLELVNCKFGQFPTLK---LKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLS 360

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
           F+G    +    TSL++LDLS N    +   +L    +LE+L    + L+      +  +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
           L ++  LD+S           F+   +L  + ++G       +  +   F+   +  L  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRN--LTF 474

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTV 454
           LDLS   L             L  ++++ N +         +L+SL+ + +  N  + + 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 455 SEIHF 459
             I +
Sbjct: 535 PRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (339), Expect = 6e-33
 Identities = 107/634 (16%), Positives = 190/634 (29%), Gaps = 137/634 (21%)

Query: 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRIS 328
              + NF   IPD +    S ++LDLS N   +L       F  L+ L LS   +Q  I 
Sbjct: 13  QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE 68

Query: 329 SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCV 388
               ++LS + +L L+ N ++     +FS   +L+ +      L+               
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-------------- 114

Query: 389 SDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLGKLSSLRYLDISN 447
                   L N  +   L         L  ++++ N I S ++P     L++L +LD+S+
Sbjct: 115 --------LENFPIGH-LKT-------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 448 NQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL 507
           N++  ++       L  +                          LDL    +        
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPL--------------------LNLSLDLSLNPMNF-IQPGA 196

Query: 508 HSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLS 567
             +  L  L + ++     +     + +       L   +   E         L   D S
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-------GNLEKFDKS 249

Query: 568 ANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC 627
           A      L +    +  LD   + +           +       I  ++D          
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-------Y 302

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
              W++L ++     +F      SL      + L   +N        S  +   LE +D+
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSL------KRLTFTSNKGGNAF--SEVDLPSLEFLDL 354

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT 747
             N  S                       F G           LK L L+ N +  T+ +
Sbjct: 355 SRNGLS-----------------------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390

Query: 748 CISNFTAMAT-FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLR 806
                  +        ++  +   S F                               LR
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLS-----------------------------LR 421

Query: 807 LLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSNR 865
            L  +D+S+             L  L  L ++ N F      +I   +  L  LD S  +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 866 LEGEIPKNT-VNLVFLSHFNISYNNLSGEVPDEA 898
           LE ++      +L  L   N++ N L   VPD  
Sbjct: 482 LE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGI 513

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  179 bits (457), Expect = 3e-48
 Identities = 96/546 (17%), Positives = 188/546 (34%), Gaps = 59/546 (10%)

Query: 139 LRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGV 198
               D     F   IP+ +   + ++ L+L  N +  +   DL      + L+ L L   
Sbjct: 7   SGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKSS 60

Query: 199 DLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQ 258
            ++ +        +L SL  L L+   LS          SSL  L+L  N +    + + 
Sbjct: 61  RINTIEGDAF--YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 259 LYGLCNLVFLDLSDNNFQGPIP-DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317
              L NL  L + +      I        TSL  L++ +        + L     + +L+
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSR---FCNLRSISLSGIQLSH 374
           L  +     +  +  + LSS++ L+L    L                ++ ++  G  L+ 
Sbjct: 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 375 QKVSQVLAIFSGCVS-DVLESLDLSNTTLSGSLTNQIGKFK--------VLNSVDLSENS 425
           +  +++L +    +    +E  D +   L     ++              +  + + +  
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 426 ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485
           +   +      L  ++ + + N+++   V      +L SL F   S N +  +   N   
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 486 VFQ---LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLS 542
                 L+ L L              SQNHL ++                 ++     L 
Sbjct: 357 KGAWPSLQTLVL--------------SQNHLRSM--------QKTGEIL-LTLKNLTSLD 393

Query: 543 LSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCH 602
           +S N  H    +     ++  L+LS+  +      +   + VLD+S N L    L     
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL--- 450

Query: 603 ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH 662
                RL Q + +  N L   +PD    +  LLV+++  N+           L+ L+ + 
Sbjct: 451 ----PRL-QELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 663 LRNNNL 668
           L  N  
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (423), Expect = 7e-44
 Identities = 88/550 (16%), Positives = 188/550 (34%), Gaps = 51/550 (9%)

Query: 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN 252
            D      + +   P  +    ++  L L+  ++++     +   ++L  L L  ++  N
Sbjct: 10  CDGRSRSFTSI---P--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-N 63

Query: 253 SLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFS 311
           ++     Y L +L  LDLSDN+            +SL++L+L  N +  L +       +
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
            L+ L + +      I  +    L+S+  L++    L     +S     ++  ++L   +
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP 431
            +               S  +  L+L +T L+    + +   +V + +       S    
Sbjct: 184 SAFLLEI----FADILSS--VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 432 WSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEE 491
            S  +L  L    +  +++        F + +       + +   + +    V    +  
Sbjct: 238 ESFNELLKLLRYILELSEV-------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 492 LDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGE 551
           L +   YL     +       +  + + +S +   +P  F + +    +L LS N +   
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMV-- 347

Query: 552 IPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQ 611
                         L  +   G  P L      L LS+N L    +          +   
Sbjct: 348 -----------EEYLKNSACKGAWPSL----QTLVLSQNHLR--SMQKTGEILLTLKNLT 390

Query: 612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGT 671
            +++  N     +PD       +  L L +      + T       L  L + NNNL  +
Sbjct: 391 SLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-S 445

Query: 672 LPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731
             + L     L+ + I  N+    +P      FP ++++ +  N+   V       L  L
Sbjct: 446 FSLFLPR---LQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 732 KILVLAGNNL 741
           + + L  N  
Sbjct: 500 QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (423), Expect = 8e-44
 Identities = 92/505 (18%), Positives = 188/505 (37%), Gaps = 43/505 (8%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
              +  L+LS+N    I     L +  NL+ L L  +    +  +   +L +L++L+L  
Sbjct: 25  TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC-QLSHF 229
           N+L  L      W   LS L+ L+L G     +    L  N L +L  L++      S  
Sbjct: 84  NHLSSL---SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEI 139

Query: 230 PPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
             +  A  +SL  L++       +  +  L  + ++  L L  +     +       +S+
Sbjct: 140 RRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG---------RISSVLLENLSSIQS 340
           R+L+L   + +      L        +   + R                  +  LS ++ 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 341 LDLSFNELEW---KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA-IFSGCVSDVLESLD 396
            D + N L           S    + ++++  + +    +   L+ ++S      ++ + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK--VKRIT 316

Query: 397 LSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWS---LGKLSSLRYLDISNNQLNGT 453
           + N+ +     +     K L  +DLSEN +  +   +    G   SL+ L +S N L   
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 454 VSEIH-FANLSSLTFFYASRNSLT-LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
                    L +LT    SRN+   +  +  W    ++  L+L S  +         +  
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSSTGIRVVKTCIPQT-- 432

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
            L  LD+S++ +     + F   + +   L +S N++   +P+ +    L  + +S N L
Sbjct: 433 -LEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQL 485

Query: 572 SGQLPLLA----SNVMVLDLSKNKL 592
              +P       +++  + L  N  
Sbjct: 486 K-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 1e-32
 Identities = 74/388 (19%), Positives = 135/388 (34%), Gaps = 47/388 (12%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
                  L  L +     +  Q  + L S+ ++  L L  +    ++      LS+++YL
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVT--NALRSLLVLQLAGC 224
            LR   L       L      S ++ L   G  L+  S   L+     +  L  ++   C
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 225 QL-----------SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
            L                L      ++  L +         ++T    L  +  + + ++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENS 320

Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW---LNKFSRLEYLSLSSNRLQG-RISS 329
                     Q+  SL  LDLS N       +       +  L+ L LS N L+  + + 
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 330 VLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVS 389
            +L  L ++ SLD+S N     +P S      +R ++LS   +              C+ 
Sbjct: 381 EILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV---------VKTCIP 430

Query: 390 DVLESLDLSN---TTLSGSLT---------NQI------GKFKVLNSVDLSENSISGQVP 431
             LE LD+SN    + S  L          N++        F VL  + +S N +     
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490

Query: 432 WSLGKLSSLRYLDISNNQLNGTVSEIHF 459
               +L+SL+ + +  N  + +   I +
Sbjct: 491 GIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (309), Expect = 3e-29
 Identities = 97/613 (15%), Positives = 177/613 (28%), Gaps = 119/613 (19%)

Query: 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
           +    D  S  F+  IP  L   + ++ L LS N++   I    L   +++Q L L  + 
Sbjct: 6   ASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
           +      +F    +L  + LS   LS                       LS++     L+
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSS----------------------LSSSWFGP-LS 98

Query: 408 NQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLT 466
           +       L  ++L  N      V      L++L+ L I N +    +  I FA L+SL 
Sbjct: 99  S-------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 467 FFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT 526
                  SL              +                L S   + +L +  S     
Sbjct: 152 ELEIKALSLR-----------NYQ-------------SQSLKSIRDIHHLTLHLSES-AF 186

Query: 527 IPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLD 586
           +   F   ++   YL L +  +              +  +      G +    S   +L 
Sbjct: 187 LLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG 646
           L +  L  S + F     +   L  + +   +          +    +  L +       
Sbjct: 246 LLRYILELSEVEF-----DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 647 KLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIG--ERF 704
            L T    L  ++ + + N+ +         +   LE +D+ EN               +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 705 PRMIILILRSNKFH--GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSD 762
           P +  L+L  N           L  L  L  L ++ N                       
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------------------- 400

Query: 763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITL--EGKTLT--FKAVLRLLTNIDLSNNKF 818
                        P       +      +  L      +      + + L  +D+SNN  
Sbjct: 401 -----------PMPDSCQWPEK------MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 819 SGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV-NL 877
                     L  L+ L +S N     +P+      +L  +  S N+L+  +P      L
Sbjct: 444 D-SFSLF---LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRL 496

Query: 878 VFLSHFNISYNNL 890
             L    +  N  
Sbjct: 497 TSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 2e-27
 Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 13/242 (5%)

Query: 105 NPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQ 164
               ++   +  L++                +  ++ + +  +    +  +   +L +L+
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           +L+L  N +   Y+++         L+ L LS   L  +     +   L++L  L ++  
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
                P  S      +  L+LS           +      L  LD+S+NN    +     
Sbjct: 398 TFHPMPD-SCQWPEKMRFLNLSSTGIRV----VKTCIPQTLEVLDVSNNN----LDSFSL 448

Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
               L+ L +S N    L    L  F  L  + +S N+L+  +   + + L+S+Q + L 
Sbjct: 449 FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH 505

Query: 345 FN 346
            N
Sbjct: 506 TN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.3 bits (227), Expect = 4e-19
 Identities = 60/364 (16%), Positives = 124/364 (34%), Gaps = 31/364 (8%)

Query: 540 YLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLS 593
            L LS N+I   I +  L   + L  L L ++ ++  +   A     ++  LDLS N LS
Sbjct: 30  SLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 594 GSILHFVCHETNGTRLTQIINLEDNLLAG-EIPDCWMNWRYLLVLRL-DNNKFTGKLPTS 651
            S+          + L + +NL  N      +   + N   L  LR+ +   F+      
Sbjct: 88  -SLSSSWFGPL--SSL-KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711
              L+ L  L ++  +L      SL +  ++  + +  +E +  +     +    +  L 
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLE 202

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPS 771
           LR           L        +       S       +    +  ++   S       +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
                    + ++     EL  +E  T+           + +       ++    ++L +
Sbjct: 263 LNGLGDFNPSESDVV--SELGKVETVTIR---------RLHIPQFYLFYDLSTVYSLLEK 311

Query: 832 LRSLNLSHNFFSGRIPENIGA-MALLESLDFSSNRLEGEIPKNTV---NLVFLSHFNISY 887
           ++ + + ++     +P +    +  LE LD S N +  E  KN+        L    +S 
Sbjct: 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 888 NNLS 891
           N+L 
Sbjct: 371 NHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 6e-09
 Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 34/264 (12%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
           V    +  FT  +P+ L   + ++SL L  N ++      L  C  L+ + +  +  +  
Sbjct: 9   VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG-TIPTCISNFTA 754
           +          +  L L  N    +       L+ LK L L GN      + +   N T 
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 755 MATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLS 814
           +   L   ++ T        F G                           L  L  +++ 
Sbjct: 125 L-QTLRIGNVETFSEIRRIDFAG---------------------------LTSLNELEIK 156

Query: 815 NNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT 874
                      +  +R++  L L  +  +  +      ++ +  L+     L      + 
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSP 215

Query: 875 VNLVFLSHFNISYNNLSGEVPDEA 898
           + +  +S            + DE+
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDES 239

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 8e-41
 Identities = 97/513 (18%), Positives = 187/513 (36%), Gaps = 61/513 (11%)

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
           L S  + Q     ++     +    +  +   L      +++  T L     +  L    
Sbjct: 3   LGSATITQ--DTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADR 55

Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
              +    D ++   +L  ++ S+N  + + P  L   ++L  + +++N++        L
Sbjct: 56  LGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---L 108

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
            NL+++  L L  N++   I        NL  + LS   +S       ++  SG  S  L
Sbjct: 109 ANLTNLTGLTLFNNQIT-DID-PLKNLTNLNRLELSSNTISD------ISALSGLTS--L 158

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
           + L   N          +     L  +D+S N +S      L KL++L  L  +NNQ++ 
Sbjct: 159 QQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS- 212

Query: 453 TVSEIHFANLSSLTFFYASRNSLT----LKANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508
                    L++L     + N L     L +  N      L +LDL +  +    P  L 
Sbjct: 213 --DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAP--LS 262

Query: 509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSA 568
               L  L +  + I +  P      +T    L L+ NQ+   I  ++ +  L  L L  
Sbjct: 263 GLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYF 318

Query: 569 NNLSGQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC 627
           NN+S   P+ + + +  L    NK+S   +  + + TN   L    +   N ++   P  
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWL----SAGHNQISDLTPLA 372

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
            +    +  L L++  +T         +S+  ++      L    P ++ +       DI
Sbjct: 373 NLT--RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDI 428

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGV 720
             N  S          F + + +   +  F G 
Sbjct: 429 TWNLPSYT-NEVSYT-FSQPVTIGKGTTTFSGT 459

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  149 bits (378), Expect = 1e-38
 Identities = 96/497 (19%), Positives = 184/497 (37%), Gaps = 60/497 (12%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
                    +   L   +            +  +  L     G   +    +  L+NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
           +N   N L      D+  L +L+ L ++ ++   ++ ++        L +L  L L   Q
Sbjct: 73  INFSNNQL-----TDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ 123

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           ++   PL   N ++L  L+LS N   + + A  L GL +L  L    N      P  + N
Sbjct: 124 ITDIDPLK--NLTNLNRLELSSNTI-SDISA--LSGLTSLQQLSFG-NQVTDLKP--LAN 175

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSF 345
            T+L  LD+SSN  S +    L K + LE L  ++N++        L  L+++  L L+ 
Sbjct: 176 LTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNG 230

Query: 346 NELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGS 405
           N+L+  I  + +   NL  + L+  Q+S+      LA  SG     L  L L    +S  
Sbjct: 231 NQLK-DIG-TLASLTNLTDLDLANNQISN------LAPLSGLTK--LTELKLGANQISNI 280

Query: 406 LTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL 465
             + +     L +++L+EN +    P  +  L +L YL +  N ++        ++L+ L
Sbjct: 281 --SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---SPVSSLTKL 333

Query: 466 TFFYASRNSLT----LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDS 521
              +   N ++    L    N      +  L      +    P  L +   +  L ++D 
Sbjct: 334 QRLFFYNNKVSDVSSLANLTN------INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 522 GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS--GQLPLLA 579
              +   N    +         +          +++       D++ N  S   ++    
Sbjct: 386 AWTNAPVNYK--ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTF 443

Query: 580 SNVMVLDLSKNKLSGSI 596
           S  + +       SG++
Sbjct: 444 SQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (290), Expect = 3e-27
 Identities = 95/501 (18%), Positives = 181/501 (36%), Gaps = 70/501 (13%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           L S  ++  T    +              L + +++  V      L  +  L      + 
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
            ++  +    L++LT    S N LT       +   +L ++ + +  +    P  L +  
Sbjct: 60  -SIDGV--EYLNNLTQINFSNNQLTDITPLKNLT--KLVDILMNNNQIADITP--LANLT 112

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
           +L  L + ++ I D  P    K++T  N L LS+N I   I  L+ ++ L  L    N +
Sbjct: 113 NLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQV 167

Query: 572 SGQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
           +   PL   + +  LD+S NK+S   +  +   TN   L       +N ++   P     
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL----IATNNQISDITPLG--I 219

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
              L  L L+ N+       +L +L+ L  L L NN +S   P  L   T+L  + +G N
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750
           + S   P         +  L L  N+   + P+   +L  L  L L  NN+S   P  +S
Sbjct: 276 QISNISPL---AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VS 328

Query: 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTN 810
           + T +      ++   +   S  +                              L  +  
Sbjct: 329 SLTKLQRLFFYNNK--VSDVSSLAN-----------------------------LTNINW 357

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI 870
           +   +N+ S   P  +  L  +  L L+   ++         +++  ++   +  L    
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--A 413

Query: 871 PKNTVNLVFLSHFNISYNNLS 891
           P    +    +  +I++N  S
Sbjct: 414 PATISDGGSYTEPDITWNLPS 434

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-40
 Identities = 73/369 (19%), Positives = 144/369 (39%), Gaps = 40/369 (10%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLN 167
             D    I   L       +        + ++  L ++G     +    I  L+NL+YLN
Sbjct: 18  DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVASIQG--IEYLTNLEYLN 72

Query: 168 LRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLS 227
           L  N +      D+  L +L  L NL +    ++ +S        L +L  L L    +S
Sbjct: 73  LNGNQI-----TDISPLSNLVKLTNLYIGTNKITDISAL----QNLTNLRELYLNEDNIS 123

Query: 228 HFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWT 287
              PL+  N + + +L+L  N   + L    L  +  L +L ++++  +   P  I N T
Sbjct: 124 DISPLA--NLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLT 177

Query: 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
            L  L L+ N    + P  L   + L Y +   N++        + N++ + SL +  N+
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK 232

Query: 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
           +   +    +    L  + +   Q+S       +          L+ L++ +  +S  ++
Sbjct: 233 IT-DLS-PLANLSQLTWLEIGTNQISD------INAVKDLTK--LKMLNVGSNQIS-DIS 281

Query: 408 NQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTF 467
             +     LNS+ L+ N +  +    +G L++L  L +S N +         A+LS +  
Sbjct: 282 V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDS 337

Query: 468 FYASRNSLT 476
              +   + 
Sbjct: 338 ADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (302), Expect = 1e-29
 Identities = 72/456 (15%), Positives = 143/456 (31%), Gaps = 133/456 (29%)

Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
             TL       +          L   +   L   +    +    +   S+  L ++    
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRF 359
           + +    +   + LEYL+L+ N++        L NL  + +L +  N++        S  
Sbjct: 57  ASIQG--IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKIT-----DISAL 106

Query: 360 CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSV 419
            NL +                           L  L L+   +S    + +     + S+
Sbjct: 107 QNLTN---------------------------LRELYLNEDNISDI--SPLANLTKMYSL 137

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKA 479
           +L  N     +   L  ++ L YL ++ +++         ANL+ L     + N +    
Sbjct: 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIE--- 190

Query: 480 NPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFN 539
                    +  L                    L +L                      +
Sbjct: 191 --------DISPLA------------------SLTSL----------------------H 202

Query: 540 YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVLDLSKNKLSGSILH 598
           Y +   NQI   I  +  +++L +L +  N ++   PL   S +  L++  N++S     
Sbjct: 203 YFTAYVNQITD-ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD---- 257

Query: 599 FVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLL 658
                        I  ++             +   L +L + +N+ +    + L  LS L
Sbjct: 258 -------------INAVK-------------DLTKLKMLNVGSNQISD--ISVLNNLSQL 289

Query: 659 RSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG 694
            SL L NN L       +G  T L T+ + +N  + 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (289), Expect = 8e-28
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 23/244 (9%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
             L +   +  LNL  N    +     L +M  L +L ++ +    + P  I NL++L  
Sbjct: 126 SPLANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
           L+L  N +     ED+  L  L+ L         ++ ++        +  L  L++   +
Sbjct: 182 LSLNYNQI-----EDISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK 232

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           ++   PL+  N S L  L++  NQ  +      +  L  L  L++  N         + N
Sbjct: 233 ITDLSPLA--NLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISDISV--LNN 285

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSF 345
            + L  L L++N       E +   + L  L LS N +   I    L +LS + S D + 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP--LASLSKMDSADFAN 342

Query: 346 NELE 349
             ++
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 6e-24
 Identities = 64/383 (16%), Positives = 138/383 (36%), Gaps = 42/383 (10%)

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
              L    + I    P+       +     L    +   +    E+  +  L ++   ++
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIR---AVLQKASVTD-VVTQEELESITKLVVAGEKVA 57

Query: 573 GQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQI--INLEDNLLAGEIPDCWM 629
               +   +N+  L+L+ N+++             + L ++  + +  N +         
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITDIS--------PLSNLVKLTNLYIGTNKI--TDISALQ 107

Query: 630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE 689
           N   L  L L+ +  +    + L  L+ + SL+L  N+   +    L N T L  + + E
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTE 164

Query: 690 NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCI 749
           ++   +V          +  L L  N+   + PL    L  L       N ++   P  +
Sbjct: 165 SKVK-DVTPI--ANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--V 217

Query: 750 SNFTAMATF-LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLL 808
           +N T + +  +G++ I      +D S       +T   +    I+     +     L  L
Sbjct: 218 ANMTRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTNQIS----DINAVKDLTKL 267

Query: 809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG 868
             +++ +N+ S    + +  L +L SL L++N       E IG +  L +L  S N +  
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 869 EIPKNTVNLVFLSHFNISYNNLS 891
             P    +L  +   + +   + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (253), Expect = 4e-23
 Identities = 79/454 (17%), Positives = 154/454 (33%), Gaps = 111/454 (24%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
             ++      I+   P     L+      +    +      +    L S+T    +   +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKV 56

Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
                        ++ ++    YL            +L  L+++ + I D  P     ++
Sbjct: 57  A-----------SIQGIE----YL-----------TNLEYLNLNGNQITDISPL---SNL 87

Query: 536 TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVLDLSKNKLSG 594
            +   L +  N+I  +I  L  ++ L  L L+ +N+S   PL   + +  L+L  N    
Sbjct: 88  VKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS 146

Query: 595 SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA 654
            +          + L+ +  L                     L +  +K      T +  
Sbjct: 147 DL----------SPLSNMTGLN-------------------YLTVTESKVKD--VTPIAN 175

Query: 655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714
           L+ L SL L  N +    P  L + T L       N+ +   P        R+  L + +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN 230

Query: 715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDSIYTIQYPSDF 773
           NK   + PL   +L+ L  L +  N +S      + + T +    +GS+ I  I   S  
Sbjct: 231 NKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI---SVL 283

Query: 774 SFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELR 833
           +                              L  L ++ L+NN+   E    I  L  L 
Sbjct: 284 NN-----------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 834 SLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867
           +L LS N  +   P  + +++ ++S DF++  ++
Sbjct: 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 9e-12
 Identities = 49/259 (18%), Positives = 93/259 (35%), Gaps = 25/259 (9%)

Query: 634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693
            +   L     T     +   L  +  L +    ++ ++   +   T LE +++  N+ +
Sbjct: 24  GIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT 79

Query: 694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFT 753
              P        ++  L + +NK   +  L+  +L  L+ L L  +N+S   P  ++N T
Sbjct: 80  DISPL---SNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISDISP--LANLT 132

Query: 754 AMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL 813
            M   L   + + +   S          +    V E  +      +T  A L  L ++ L
Sbjct: 133 KM-YSLNLGANHNLSDLSPL---SNMTGLNYLTVTESKVK----DVTPIANLTDLYSLSL 184

Query: 814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873
           + N+     P  +  L  L       N  +      +  M  L SL   +N++    P  
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP-- 238

Query: 874 TVNLVFLSHFNISYNNLSG 892
             NL  L+   I  N +S 
Sbjct: 239 LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
            A+ D   L  LN+  N    I +   L ++  L  L L+           IG L+NL  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSK 202
           L L  N++      D+  L  LS +++ D +   + K
Sbjct: 316 LFLSQNHI-----TDIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
           L  L  ++L+ N+ +   P  ++ L +L +L +  N  +      +  +  L  L  + +
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNED 120

Query: 865 RLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
            +    P    NL  +   N+  N+   ++ 
Sbjct: 121 NISDISPLA--NLTKMYSLNLGANHNLSDLS 149

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  149 bits (378), Expect = 1e-38
 Identities = 78/339 (23%), Positives = 132/339 (38%), Gaps = 17/339 (5%)

Query: 137 GNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLS 196
              R +      FV  +P  I   +  + L+L  N +  L  ++         LE L+L+
Sbjct: 11  AQDRAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFA---SFPHLEELELN 64

Query: 197 GVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIA 256
              +S V  G    N L +L  L L   +L   P       S+L  LD+S N+    L+ 
Sbjct: 65  ENIVSAVEPGAF--NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLD 121

Query: 257 TQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316
                L NL  L++ DN+             SL  L L   + + +  E L+    L  L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181

Query: 317 SLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQK 376
            L    +   I     + L  ++ L++S       +  +     NL S+S++   L+   
Sbjct: 182 RLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-- 238

Query: 377 VSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGK 436
           V  +       V   L  L+LS   +S    + + +   L  + L    ++   P++   
Sbjct: 239 VPYLA--VRHLVY--LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 437 LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           L+ LR L++S NQL  T+ E  F ++ +L       N L
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (359), Expect = 5e-36
 Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 8/268 (2%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
               F HL  L L+ N    ++ P    ++ NLR L L       +       LSNL  L
Sbjct: 51  EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           ++  N +  L         DL  L++L++   DL  +S+     + L SL  L L  C L
Sbjct: 110 DISENKIVIL---LDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNL 164

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
           +  P  ++++   L+ L L H    N++       L  L  L++S   +   +       
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
            +L  L ++  + + +    +     L +L+LS N +   I   +L  L  +Q + L   
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGG 282

Query: 347 ELEWKIPRSFSRFCNLRSISLSGIQLSH 374
           +L    P +F     LR +++SG QL+ 
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (359), Expect = 5e-36
 Identities = 75/329 (22%), Positives = 118/329 (35%), Gaps = 18/329 (5%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
              LDL    +  ++     +     L  L+L    +S   P +  N  +L TL L  N+
Sbjct: 34  TRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNK 309
               +      GL NL  LD+S+N     +    Q+  +L+ L++  N   Y+     + 
Sbjct: 92  L-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 310 FSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
            + LE L+L    L   I +  L +L  +  L L    +      SF R   L+ + +S 
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 370 IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ 429
                      L   +      L SL +++  L+      +     L  ++LS N IS  
Sbjct: 210 WPYLDTMTPNCLYGLN------LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQL 489
               L +L  L+ + +   QL   V    F  L+ L     S N LT      +  V  L
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 490 EELDLRS------CYLGPPFPSWLHSQNH 512
           E L L S      C L           N 
Sbjct: 323 ETLILDSNPLACDCRLL-WVFRRRWRLNF 350

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  137 bits (348), Expect = 1e-34
 Identities = 68/341 (19%), Positives = 119/341 (34%), Gaps = 38/341 (11%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
                 L+L  N  K +       S  +L  L+L+      + P    NL NL+ L LR 
Sbjct: 31  PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
           N L  +    LG    LS L  LD+S   +  + +       L +L  L++    L +  
Sbjct: 90  NRLKLI---PLGVFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYIS 144

Query: 231 PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLR 290
             + +  +SL  L L       S+    L  L  L+ L L   N       + +    L+
Sbjct: 145 HRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 291 HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW 350
            L++S   +   +         L  LS++   L   +  + + +L  ++ L+LS+N +  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 351 KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQI 410
                      L+ I L G QL+                       +      G L    
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAV----------------------VEPYAFRG-LNY-- 297

Query: 411 GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
                L  +++S N ++         + +L  L + +N L 
Sbjct: 298 -----LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (344), Expect = 4e-34
 Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 8/263 (3%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
           A  +  +L  L L  N  K I        + NL  LD+S    V ++     +L NL+ L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
            +  N L  +          L+ LE L L   +L+ +    L  + L  L+VL+L    +
Sbjct: 134 EVGDNDLVYI---SHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNI 188

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
           +     S      L  L++SH  + +++    LYGL NL  L ++  N        +++ 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHL 247

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
             LR L+LS N  S +    L++  RL+ + L   +L   +       L+ ++ L++S N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

Query: 347 ELEWKIPRSFSRFCNLRSISLSG 369
           +L       F    NL ++ L  
Sbjct: 307 QLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (334), Expect = 7e-33
 Identities = 64/357 (17%), Positives = 121/357 (33%), Gaps = 39/357 (10%)

Query: 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN 252
           +         V   P          +L L   ++        A+F  L  L+L+ N    
Sbjct: 16  VLCHRKRFVAV---P--EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 253 SLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSR 312
           ++       L NL  L L  N  +          ++L  LD+S N    L+         
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
           L+ L +  N L   IS      L+S++ L L    L      + S    L  + L  + +
Sbjct: 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
           +  +       F       L+ L++S+     ++T        L S+ ++  +++     
Sbjct: 189 NAIRDY----SFKRLYR--LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEEL 492
           ++  L  LR+L++S N ++ T+       L  L                      QL  +
Sbjct: 243 AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGG--------------QLAVV 287

Query: 493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
           +          P      N+L  L++S + +  T+    + S+     L L +N + 
Sbjct: 288 E----------PYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  126 bits (319), Expect = 6e-31
 Identities = 75/333 (22%), Positives = 128/333 (38%), Gaps = 16/333 (4%)

Query: 242 TLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSY 301
            +     +F    +   +        LDL  N  +    D   ++  L  L+L+ N  S 
Sbjct: 15  AVLCHRKRFVA--VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 302 LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCN 361
           + P   N    L  L L SNRL+  I   +   LS++  LD+S N++   +   F    N
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 362 LRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDL 421
           L+S+ +    L +         FSG  S  LE L L    L+   T  +     L  + L
Sbjct: 130 LKSLEVGDNDLVYISHR----AFSGLNS--LEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 422 SENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANP 481
              +I+    +S  +L  L+ L+IS+     T++      L +LT    +  +LT     
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYL 242

Query: 482 NWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYL 541
               +  L  L+L    +     S LH    L  + +    +   +    ++ +     L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVL 301

Query: 542 SLSNNQIHGEIPN--LTEVSQLGTLDLSANNLS 572
           ++S NQ+   +       V  L TL L +N L+
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 3e-22
 Identities = 60/341 (17%), Positives = 125/341 (36%), Gaps = 53/341 (15%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
            +V          VP  +   +  R LD+  N++  T+++  FA+   L     + N ++
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS 69

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
                 +  +F L  L L                N L             IP   +  ++
Sbjct: 70  AVEPGAFNNLFNLRTLGL--------------RSNRLK-----------LIPLGVFTGLS 104

Query: 537 QFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKN 590
               L +S N+I   + +    ++  L +L++  N+L   +   A    +++  L L K 
Sbjct: 105 NLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162

Query: 591 KLS----GSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW-RYLLVLRLDNNKFT 645
            L+     ++ H          L  ++ L    +   I D        L VL + +  + 
Sbjct: 163 NLTSIPTEALSHL-------HGL-IVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYL 213

Query: 646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFP 705
             +  +      L SL + + NL+    +++ +   L  +++  N  S  +   +     
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELL 272

Query: 706 RMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
           R+  + L   +   V P     L +L++L ++GN L+ T+ 
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 69/386 (17%), Positives = 119/386 (30%), Gaps = 95/386 (24%)

Query: 489 LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
              LDL    +         S  HL  L+++++ +   +    + ++     L L +N++
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 549 HGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCH 602
              IP    T +S L  LD+S N +   L         N+  L++  N L          
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV--------- 141

Query: 603 ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH 662
                       +     +G           L  L L+    T     +L  L  L  L 
Sbjct: 142 -----------YISHRAFSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP 722
           LR+ N++     S      L+ ++I    +   +          +  L +       V  
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVPY 241

Query: 723 LELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNI 782
           L + HL +L+ L L+ N +S TI                                     
Sbjct: 242 LAVRHLVYLRFLNLSYNPIS-TIE-----------------------------GSMLHE- 270

Query: 783 TEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHNF 841
                                 L  L  I L   + +  +       L  LR LN+S N 
Sbjct: 271 ----------------------LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307

Query: 842 FSGRIPENI-GAMALLESLDFSSNRL 866
            +  + E++  ++  LE+L   SN L
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.8 bits (210), Expect = 3e-17
 Identities = 57/338 (16%), Positives = 116/338 (34%), Gaps = 44/338 (13%)

Query: 559 SQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLT--QIINLE 616
           +Q   +             + +   +LDL KN++         ++         + + L 
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK------TLNQDEFASFPHLEELELN 64

Query: 617 DNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSL 676
           +N+++   P  + N   L  L L +N+           LS L  L +  N +   L    
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 677 GNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVL 736
            +   L+++++G+N+    +          +  L L       +    L HL  L +L L
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 737 AGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEG 796
              N++  I           +F     +  ++           +   +      L  L  
Sbjct: 184 RHLNIN-AIRDY--------SFKRLYRLKVLEI--------SHWPYLDTMTPNCLYGLN- 225

Query: 797 KTLTFKAVLRLLTNIDLSNNKFSGEIPAE-ITVLRELRSLNLSHNFFSGRIPENI-GAMA 854
                      LT++ +++   +  +P   +  L  LR LNLS+N  S  I  ++   + 
Sbjct: 226 -----------LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELL 272

Query: 855 LLESLDFSSNRLEGEIPKNT-VNLVFLSHFNISYNNLS 891
            L+ +     +L   +       L +L   N+S N L+
Sbjct: 273 RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
           +      L  L +S+  +     P  L  + NL  L ++      +    + +L  L++L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           NL  N +  +   +   L++L  L+ + L G  L+ V         L  L VL ++G QL
Sbjct: 254 NLSYNPISTI---EGSMLHELLRLQEIQLVGGQLAVVEPYAF--RGLNYLRVLNVSGNQL 308

Query: 227 SHFPPLSVANFSSLVTLDLSHNQF 250
           +        +  +L TL L  N  
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 47/243 (19%), Positives = 72/243 (29%), Gaps = 64/243 (26%)

Query: 659 RSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH 718
           R++          +P  +   TE   +D+G+N     +       FP +  L L  N   
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS 69

Query: 719 GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGK 778
            V P    +L  L+ L L  N L   IP           F G                  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK-LIPL--------GVFTG------------------ 102

Query: 779 FFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEI-TVLRELRSLNL 837
                                     L  LT +D+S NK    +   +   L  L+SL +
Sbjct: 103 --------------------------LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV 135

Query: 838 SHNFFSGRIPENI-GAMALLESLDFSSNRLEGEIPKNT-VNLVFLSHFNISYNNLSGEVP 895
             N     I       +  LE L      L   IP     +L  L    + + N++  + 
Sbjct: 136 GDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIR 192

Query: 896 DEA 898
           D +
Sbjct: 193 DYS 195

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  146 bits (370), Expect = 7e-37
 Identities = 84/458 (18%), Positives = 153/458 (33%), Gaps = 38/458 (8%)

Query: 105 NPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQ 164
               +   +   +    +  + +     L S   +  L+L+      +          +Q
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
            L +  N +  L         ++ LL  L L   DLS +  G    +    L  L ++  
Sbjct: 103 KLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNN 157

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
            L      +    +SL  L LS N+    L    L  + +L   ++S N        T+ 
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLS-----TLA 208

Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
              ++  LD S N  + +          L  L L  N L     +  L N   +  +DLS
Sbjct: 209 IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLS 262

Query: 345 FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG 404
           +NELE  +   F +   L  + +S  +L       +        +  L+ LDLS+  L  
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPT--LKVLDLSHNHLL- 314

Query: 405 SLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSS 464
            +     +F  L ++ L  NSI       L    +L+ L +S+N  +       F N++ 
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371

Query: 465 LTFFYASRNSLTLKANPNWV----PVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISD 520
                A ++        + +          +  L+   L         +Q      D  +
Sbjct: 372 PAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTIN 431

Query: 521 S--GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLT 556
           S   +   I  +    +     L    N++  E+  LT
Sbjct: 432 SVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLT 469

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (333), Expect = 4e-32
 Identities = 83/501 (16%), Positives = 152/501 (30%), Gaps = 54/501 (10%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
               + +       +        ++   +   ++     L A  L     +  L+L+D  
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQ 86

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
            +           +++ L +  N   YL P        L  L L  N L   +   +  N
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
              + +L +S N LE +I      F    S                           L++
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDT--FQATTS---------------------------LQN 175

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTV 454
           L LS+  L+      +     L   ++S N +S     +L    ++  LD S+N +    
Sbjct: 176 LQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI---- 223

Query: 455 SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLV 514
           + +       LT      N+LT       +    L E+DL    L             L 
Sbjct: 224 NVVRGPVNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 515 NLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQ 574
            L IS++ +V  +     + I     L LS+N +     N  +  +L  L L  N++   
Sbjct: 282 RLYISNNRLVA-LNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-T 338

Query: 575 LPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN--- 630
           L L     +  L LS N    + L  +        +             E   C      
Sbjct: 339 LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 631 -WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE 689
            +   L+  +       K+  + G  S   +++   +                E ++   
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV 458

Query: 690 NEFSGNVPAWIGERFPRMIIL 710
           NE    V     E+  +  +L
Sbjct: 459 NELRAEVQQLTNEQIQQEQLL 479

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (288), Expect = 1e-26
 Identities = 82/468 (17%), Positives = 151/468 (32%), Gaps = 50/468 (10%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
              +   L  L L  ND   +       +   L  L +S      +  +     ++LQ L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 167 NLRPNYLGGLYVEDLGWLYDLSL-------------LENLDLSGVDLSKVSNGPLVTNAL 213
            L  N L  + +  +  L+  ++             +E LD S   ++ V          
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-----VN 231

Query: 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
             L +L+L    L+    L   N+  LV +DLS+N+ +  ++      +  L  L +S+N
Sbjct: 232 VELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE 333
                +    Q   +L+ LDLS NH  + +     +F RLE L L  N     I ++ L 
Sbjct: 289 RLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN----SIVTLKLS 342

Query: 334 NLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSD--- 390
              ++++L LS N+ +    R+  R  N+   ++       +   Q+        SD   
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

Query: 391 ---VLESLDLSNTTLS-GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDIS 446
              +L+ + L++          +      +NSV    + I+ Q    L     L      
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

Query: 447 NNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
                  ++         L   +A  ++              L    L    L     + 
Sbjct: 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDT-------------NLRRYRLPKDGLARSSDNL 507

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN 554
                HL                       +   L   N  +  ++ N
Sbjct: 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 5e-17
 Identities = 68/429 (15%), Positives = 130/429 (30%), Gaps = 43/429 (10%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-----GNLSNLQY 165
              L + N+SYN    + IP        +  LD S         N I          L  
Sbjct: 191 IPSLFHANVSYNLLSTLAIPI------AVEELDASH--------NSINVVRGPVNVELTI 236

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
           L L+ N L      D  WL +   L  +DLS  +L K+   P     ++ L  L ++  +
Sbjct: 237 LKLQHNNL-----TDTAWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR 289

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           L            +L  LDLSHN   +  +         L  L L  N+    +   +  
Sbjct: 290 LVALNL-YGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIV-TLK--LST 343

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD--- 342
             +L++L LS N +       L  F  +   ++       +I   L   L   +S     
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401

Query: 343 ---LSFNELEWKIPRSFSRFCNLRSIS-LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
              L +  L   + +         +   ++ +Q     ++Q   +       +   ++  
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461

Query: 399 NTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIH 458
              +      QI + ++L  +    ++   +       L+     D  N           
Sbjct: 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSS--DNLNKVFTHLKERQA 519

Query: 459 FANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDI 518
           F    +      +        +     +   ++LD +              +  +  L+ 
Sbjct: 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579

Query: 519 SDSGIVDTI 527
             +   DT 
Sbjct: 580 KKNRNPDTR 588

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 54/459 (11%), Positives = 129/459 (28%), Gaps = 134/459 (29%)

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474
           V   V +   +      +    L++ + +   N+ +   +      +   +     +   
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86

Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
           +       +     +++L +                N +             +P   +++
Sbjct: 87  IEEIDTYAFAYAHTIQKLYM--------------GFNAI-----------RYLPPHVFQN 121

Query: 535 ITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLS 588
           +     L L  N +   +P        +L TL +S NNL  ++        +++  L LS
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 589 KNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL 648
            N+L+                    +++ +L+             L    +  N  +   
Sbjct: 180 SNRLT--------------------HVDLSLIPS-----------LFHANVSYNLLS--- 205

Query: 649 PTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMI 708
             +L     +  L   +N+++    V      EL  + +  N  + +    +   +P ++
Sbjct: 206 --TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLV 257

Query: 709 ILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQ 768
            + L  N+   +       +  L+ L ++ N L                           
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-------------------------- 291

Query: 769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITV 828
                +                              +  L  +DLS+N     +      
Sbjct: 292 -----ALNLYGQP-----------------------IPTLKVLDLSHNHLL-HVERNQPQ 322

Query: 829 LRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867
              L +L L HN     +   +     L++L  S N  +
Sbjct: 323 FDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 4e-16
 Identities = 71/390 (18%), Positives = 126/390 (32%), Gaps = 91/390 (23%)

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSA 568
           N+   +   +S +   +P     S  Q   L+L++ QI  EI          +  L +  
Sbjct: 51  NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 108

Query: 569 NNLSGQLPLLA----SNVMVLDLSKNKLS---GSILHFVCHETNGTRLTQIINLEDNLLA 621
           N +   LP         + VL L +N LS     I H      N  +L   +++ +N L 
Sbjct: 109 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH------NTPKL-TTLSMSNNNLE 160

Query: 622 GEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681
               D +     L  L+L +N+ T  +   L  +  L   ++  N LS     +L     
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIA 212

Query: 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
           +E +D   N  +  V          + IL L+ N       L   +   L  + L+ N  
Sbjct: 213 VEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNE- 265

Query: 742 SGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTF 801
                                    ++      F                          
Sbjct: 266 -------------------------LEKIMYHPFVK------------------------ 276

Query: 802 KAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDF 861
              ++ L  + +SNN+    +      +  L+ L+LSHN     +  N      LE+L  
Sbjct: 277 ---MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 862 SSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
             N +   +  +T     L +  +S+N+  
Sbjct: 332 DHNSIV-TLKLST--HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 4e-15
 Identities = 45/301 (14%), Positives = 101/301 (33%), Gaps = 25/301 (8%)

Query: 595 SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRY--LLVLRLDNNKFTGKLPTSL 652
               + C ++N        ++  ++   ++   + +       ++   N+         L
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 653 GALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILIL 712
            +   +  L+L +  +      +      ++ + +G N     +P  + +  P + +L+L
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130

Query: 713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDSIYTIQYPS 771
             N    +      +   L  L ++ NNL           T++    L S+ +  +    
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--- 187

Query: 772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
                    ++           +    L+  A+   +  +D S+N  +  +   +    E
Sbjct: 188 ----LSLIPSLFH-------ANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVE 233

Query: 832 LRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT-VNLVFLSHFNISYNNL 890
           L  L L HN  +      +     L  +D S N LE +I  +  V +  L    IS N L
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

Query: 891 S 891
            
Sbjct: 291 V 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 60/380 (15%), Positives = 105/380 (27%), Gaps = 61/380 (16%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
             LL++  L+ ++LSYN+ + I    F+  M  L  L +S         N++  L+    
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISN--------NRLVALN---- 294

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
                            +   +  L+ LDLS   L  V            L  L L    
Sbjct: 295 ----------------LYGQPIPTLKVLDLSHNHLLHVERN---QPQFDRLENLYLDHNS 335

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           +        +   +L  L LSHN +D + +        N+    + D +    I   +++
Sbjct: 336 IVTLKL---STHHTLKNLTLSHNDWDCNSL---RALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 286 W-------TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS--LSSNRLQGRISSVLLENLS 336
                          L     + ++ +      R        S   L   I+      L 
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
             + L+   NEL             ++ ++   IQ           I +      L    
Sbjct: 450 GNEQLEAEVNELR----------AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDG 499

Query: 397 LSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSE 456
           L     S +L       K   +  L E         +  K      L+  N  L   +  
Sbjct: 500 L--ARSSDNLNKVFTHLKERQAFKLRETQARRTE--ADAKQKETEDLEQENIALEKQLDN 555

Query: 457 IHFANLSSLTFFYASRNSLT 476
                          R  + 
Sbjct: 556 KRAKQAELRQETSLKRQKVK 575

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 49/345 (14%), Positives = 101/345 (29%), Gaps = 22/345 (6%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
             +  + L  L +S N      +  +   +  L+ LDLS    +  +         L+ L
Sbjct: 273 PFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
            L  N +  L +           L+NL LS  D    S   L     R++    +     
Sbjct: 330 YLDHNSIVTLKLS------THHTLKNLTLSHNDWDCNSLRAL----FRNVARPAVDDADQ 379

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIA-TQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
                  + +       D  +       IA T +           S  +    +      
Sbjct: 380 HCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHY 439

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSF 345
            T    + L  N    L  E     + ++ L+    + +  +  +  E  ++++   L  
Sbjct: 440 ITQQGGVPLQGN--EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPK 497

Query: 346 NELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGS 405
           + L          F +L+      ++ +  + ++  A          E L+  N  L   
Sbjct: 498 DGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKE-----TEDLEQENIALEKQ 552

Query: 406 LTNQIGK-FKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
           L N+  K  ++     L    +            + R     ++ 
Sbjct: 553 LDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 40/284 (14%), Positives = 73/284 (25%), Gaps = 36/284 (12%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-----G 158
           +N        L  L+LS+N      + R       L  L L          N I      
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDH--------NSIVTLKLS 342

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLL--ENLDLSGVDLSKVSNGPLVTNALRSL 216
               L+ L L  N              +++    ++ D       ++ +G     + +  
Sbjct: 343 THHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL--YGLCNLVFLDLSDNN 274
           L   L    L+                D  ++    S   TQ     L     L+   N 
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

Query: 275 FQGPIPDTIQNW---------------TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
            +  +                      T+LR   L  +  +         F+ L+     
Sbjct: 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAF 520

Query: 320 SNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLR 363
             R      +         + L+     LE ++    ++   LR
Sbjct: 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (364), Expect = 1e-36
 Identities = 78/501 (15%), Positives = 158/501 (31%), Gaps = 48/501 (9%)

Query: 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNL 168
            +        ++ +  K         S  N++ LDLSG     +    +   + L+ LNL
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 169 RPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGP--------------LVTNALR 214
             N L      +   L  LS L  LDL+   + ++  GP              +  +  +
Sbjct: 66  SSNVL-----YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
               + LA  +++    L     S +  LDL  N+ D    A        L  L+L  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
               +   +  +  L+ LDLSSN  ++ +       + + ++SL +N+L   I    L  
Sbjct: 181 IYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKA-LRF 235

Query: 335 LSSIQSLDLSFNELEWKIPRS-FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLE 393
             +++  DL  N       R  FS+   +++++   ++    +  +   +          
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--------PT 287

Query: 394 SLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG----QVPWSLGKLSSLRYLDISNNQ 449
                             +   L   + +  S  G    ++       +  R +D    Q
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 450 LNGTVSEIHFANLSSLTFFYASRNSLT---LKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
              TV +       +       + +L             +    +  +    L       
Sbjct: 348 YR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE- 405

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDL 566
                 L  +      +     +    +I  ++       Q+  E   L +++    L L
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

Query: 567 SANN-----LSGQLPLLASNV 582
           ++ N     L  +   LAS +
Sbjct: 466 ASANATLQELVVREQNLASQL 486

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (350), Expect = 7e-35
 Identities = 70/470 (14%), Positives = 146/470 (31%), Gaps = 76/470 (16%)

Query: 129 IPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS 188
           I     +    +   ++ +     + +   +  N++ L+L  N L  +   DL       
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA------ 55

Query: 189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHN 248
                                      L +L L+   L     L   + S+L TLDL++N
Sbjct: 56  -----------------------PFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNN 90

Query: 249 QFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLN 308
                    +L    ++  L  ++NN    +  +       +++ L++N  + L      
Sbjct: 91  YV------QELLVGPSIETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDLDEG 141

Query: 309 KFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
             SR++YL L  N +     + L  +  +++ L+L +N +   +                
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK--------------G 186

Query: 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG 428
            +  +                  L++LDLS+  L+  +  +      +  + L  N +  
Sbjct: 187 QVVFAK-----------------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL-TFFYASRNSLTLKANPNWVPVF 487
            +  +L    +L + D+  N  +       F+    + T    +   LT +         
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 488 QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQ 547
                      L  PF   L +     +  +S  G          ++  +   +     Q
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 548 IHGEIPNLTE-VSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSI 596
               I  +T       TL+     L  Q+         LD +  +  G I
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (336), Expect = 5e-33
 Identities = 65/425 (15%), Positives = 137/425 (32%), Gaps = 49/425 (11%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
                 ++D++ +  +    Q+  +++ LDLS N  S +    L  F++LE L+LSSN L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
              +    LE+LS++++LDL+ N ++           ++ ++  +   +S          
Sbjct: 71  YETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS---------- 112

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
                        +S +   G             ++ L+ N I+       G  S ++YL
Sbjct: 113 ------------RVSCSRGQG-----------KKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPF 503
           D+  N+++        A+  +L       N +        V   +L+ LDL S  L    
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 504 PSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQL 561
                S   +  + + ++ +V  I     +      +  L  N  H        ++  ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 562 GTLDLSAN-NLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLL 620
            T+       L+GQ     +   +              F        R    +       
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 621 AGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCT 680
              +     N      +     ++   +           +L  +   L   +        
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 681 ELETI 685
           EL+  
Sbjct: 385 ELDGT 389

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (301), Expect = 1e-28
 Identities = 52/383 (13%), Positives = 115/383 (30%), Gaps = 36/383 (9%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-----GNL 160
             L     L  L+L+ N  + + +        ++  L  +         N I        
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAAN--------NNISRVSCSRG 119

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
              + + L  N +  L   D G     S ++ LDL   ++  V+   L  +   +L  L 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLN 175

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           L    +          F+ L TLDLS N+   + +  +      + ++ L +N     I 
Sbjct: 176 LQYNFIYDVKGQ--VVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL-IE 230

Query: 281 DTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQ 339
             ++   +L H DL  N F    + ++ +K  R++ ++  + +   +++    E  +   
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPT 287

Query: 340 SLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399
                    E        R   L+    + +     +  ++              +D   
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR--QREIDALK 345

Query: 400 TTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHF 459
                 +     + +   +++  + ++  QV       + L               +   
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI--ELQHAT 403

Query: 460 ANLSSLTFFYASRNSLTLKANPN 482
              S L    A            
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (266), Expect = 4e-24
 Identities = 63/412 (15%), Positives = 129/412 (31%), Gaps = 36/412 (8%)

Query: 488 QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQ 547
           + +   +    L     S   S  ++  LD+S + +            T+   L+LS+N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV 69

Query: 548 IHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGT 607
           ++ E  +L  +S L TLDL+ N +  +L +   ++  L  + N +S          + G 
Sbjct: 70  LY-ETLDLESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAANNNIS------RVSCSRGQ 120

Query: 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG-KLPTSLGALSLLRSLHLRNN 666
              + I L +N +             +  L L  N+           +   L  L+L+ N
Sbjct: 121 GK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 667 NLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELC 726
            +   +   +    +L+T+D+  N+ +  +          +  + LR+NK   +    L 
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVLI-EKALR 234

Query: 727 HLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITE-- 784
               L+   L GN                  F  +  + T+   +     G+        
Sbjct: 235 FSQNLEHFDLRGNGFHCGTL--------RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 785 QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE----LRSLNLSHN 840
                     E     F   L  L   + +     G     +   RE     R ++    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 841 FFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892
            +   I +         +L+     L+ ++          +H  +       
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVS-----NGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 4e-24
 Identities = 69/521 (13%), Positives = 139/521 (26%), Gaps = 104/521 (19%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
            +   +++++L  +L +       +  +DLS N +S      L   + L  L++S+N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 452 GTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
            T   +   +LS+L     + N +  L   P+      +E L                + 
Sbjct: 72  ET---LDLESLSTLRTLDLNNNYVQELLVGPS------IETLHA--------------AN 108

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSAN 569
           N++             +     +       + L+NN+I           S++  LDL  N
Sbjct: 109 NNI-----------SRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 570 NLS----GQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP 625
            +      +L   +  +  L+L  N +                              ++ 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-----------------------------DVK 185

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685
              + +  L  L L +NK    +     + + +  + LRNN L   +  +L     LE  
Sbjct: 186 G-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI 745
           D+  N F          +  R  +  +       +            +            
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQR--VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL- 299

Query: 746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
                                  +        +  +        E   LE +        
Sbjct: 300 --------------------PAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-- 337

Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
                ID    ++   I       +   +L         ++     A A L+     +  
Sbjct: 338 --QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

Query: 866 LEG--EIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFD 904
                   +    L  L      Y  +  E       A  D
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 48/270 (17%), Positives = 98/270 (36%), Gaps = 23/270 (8%)

Query: 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE 683
           I +   N     + ++ ++     L +   +   ++ L L  N LS      L   T+LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG 743
            +++  N                +  L L +N        EL     ++ L  A NN+S 
Sbjct: 62  LLNLSSNVLY-ETLDLES--LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 744 TIPTCISNFTAMAT-FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE-ELITLEGKTLTF 801
            +    S        +L ++ I  ++   D    G    +    ++  E+ T+       
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLR---DLDE-GCRSRVQYLDLKLNEIDTVNFA--EL 164

Query: 802 KAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDF 861
            A    L +++L  N    ++  ++    +L++L+LS N  +  +     + A +  +  
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 862 SSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
            +N+L   I K       L HF++  N   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 6/247 (2%)

Query: 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSN 162
            + P       + +++L  N      I + L    NL   DL G GF      +     N
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKN 261

Query: 163 LQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLA 222
            +   +    +  L  ++       +L         DL       L+    +   +L   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDT 282
           G +          N +    +D    Q+  ++I          + L+         + + 
Sbjct: 322 GSETERLECERE-NQARQREIDALKEQY-RTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
            +    L      +     L      + S L+ L     R +           ++I+  D
Sbjct: 380 RRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 343 LSFNELE 349
           +  ++  
Sbjct: 439 MYQHKET 445

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (343), Expect = 1e-34
 Identities = 73/407 (17%), Positives = 127/407 (31%), Gaps = 37/407 (9%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
           I+  L        +++             + ++ N + +    +    +    + +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
           + LNL    +  +   D         ++ L +    +  +         +  L VL L  
Sbjct: 72  ELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLER 126

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI 283
             LS  P     N   L TL +S+N     +         +L  L LS N     +  + 
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH-VDLS- 183

Query: 284 QNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDL 343
               SL H ++S N  S L          +E L  S N     I+ V       +  L L
Sbjct: 184 -LIPSLFHANVSYNLLSTLAIP-----IAVEELDASHN----SINVVRGPVNVELTILKL 233

Query: 344 SFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS 403
             N L          +  L  + LS  +L           F       LE L +SN  L 
Sbjct: 234 QHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYH----PFVKMQR--LERLYISNNRLV 285

Query: 404 GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLS 463
            +L         L  +DLS N +   V  +  +   L  L + +N +      +  +   
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI----VTLKLSTHH 339

Query: 464 SLTFFYASRNSLT---LKANPNWVPVFQLEELDLRSCYLGPPFPSWL 507
           +L     S N      L+A    V    +++ D   C +       L
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ-HCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (341), Expect = 2e-34
 Identities = 77/390 (19%), Positives = 140/390 (35%), Gaps = 32/390 (8%)

Query: 186 DLSLLENLDLSGVDLSKVSNG---PLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242
           D +L  +     V +   +           L +  ++      +   P   + +F  +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           L+L+  Q    +          +  L +  N  +   P   QN   L  L L  N  S L
Sbjct: 74  LNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNL 362
                +   +L  LS+S+N L+ RI     +  +S+Q+L LS N L   +    S   +L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 363 RSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422
              ++S   LS           +  ++  +E LD S+ +++  +   +     L  + L 
Sbjct: 189 FHANVSYNLLST---------LAIPIA--VEELDASHNSIN-VVRGPV--NVELTILKLQ 234

Query: 423 ENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPN 482
            N+++    W L     L  +D+S N+L   +    F  +  L   Y S N L    N  
Sbjct: 235 HNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 483 WVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLS 542
             P+  L+ LDL   +L           + L NL +  + IV T+      ++     L+
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKN---LT 345

Query: 543 LSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
           LS+N              +    +   +  
Sbjct: 346 LSHNDWD-CNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (324), Expect = 4e-32
 Identities = 70/380 (18%), Positives = 122/380 (32%), Gaps = 50/380 (13%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
               + +       +        ++   +   ++     L A  L     +  L+L+D  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQ 80

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
            +           +++ L +  N   YL P        L  L L  N L   +   +  N
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
              + +L +S N LE +I      F    S                           L++
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDT--FQATTS---------------------------LQN 169

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTV 454
           L LS+  L+      +     L   ++S N +S     +L    ++  LD S+N +    
Sbjct: 170 LQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI---- 217

Query: 455 SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLV 514
           + +       LT      N+LT       +    L E+DL    L             L 
Sbjct: 218 NVVRGPVNVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 515 NLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQ 574
            L IS++ +V  +     + I     L LS+N +     N  +  +L  L L  N++   
Sbjct: 276 RLYISNNRLVA-LNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-T 332

Query: 575 LPLLA-SNVMVLDLSKNKLS 593
           L L     +  L LS N   
Sbjct: 333 LKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 6e-29
 Identities = 73/453 (16%), Positives = 141/453 (31%), Gaps = 107/453 (23%)

Query: 247 HNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW 306
             Q +   I + L   C    + +                 + + +   ++    L    
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
           L+ F ++E L+L+  +++  I +       +IQ L + FN + +  P  F     L  + 
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI 426
           L    LS                       L                  L ++ +S N++
Sbjct: 124 LERNDLSS----------------------LPRGIFHN-TPK-------LTTLSMSNNNL 153

Query: 427 SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPV 486
                 +    +SL+ L +S+N+L    + +  + + SL     S N L+  A P     
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRL----THVDLSLIPSLFHANVSYNLLSTLAIP----- 204

Query: 487 FQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNN 546
             +EELD               S N +           + +       +T    L L +N
Sbjct: 205 IAVEELDA--------------SHNSI-----------NVVRGPVNVELT---ILKLQHN 236

Query: 547 QIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCH 602
            +  +   L     L  +DLS N L  ++          +  L +S N+L          
Sbjct: 237 NLT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--------- 285

Query: 603 ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH 662
                                +         L VL L +N     +  +      L +L+
Sbjct: 286 --------------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
           L +N++     + L     L+ + +  N++  N
Sbjct: 325 LDHNSIV---TLKLSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 54/459 (11%), Positives = 129/459 (28%), Gaps = 134/459 (29%)

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474
           V   V +   +      +    L++ + +   N+ +   +      +   +     +   
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
           +       +     +++L +                N +             +P   +++
Sbjct: 81  IEEIDTYAFAYAHTIQKLYM--------------GFNAI-----------RYLPPHVFQN 115

Query: 535 ITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLS 588
           +     L L  N +   +P        +L TL +S NNL  ++        +++  L LS
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173

Query: 589 KNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL 648
            N+L+                    +++ +L+             L    +  N  +   
Sbjct: 174 SNRLT--------------------HVDLSLIPS-----------LFHANVSYNLLS--- 199

Query: 649 PTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMI 708
             +L     +  L   +N+++    V      EL  + +  N  + +    +   +P ++
Sbjct: 200 --TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLV 251

Query: 709 ILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQ 768
            + L  N+   +       +  L+ L ++ N L                           
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-------------------------- 285

Query: 769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITV 828
                +                              +  L  +DLS+N     +      
Sbjct: 286 -----ALNLYGQP-----------------------IPTLKVLDLSHNHLL-HVERNQPQ 316

Query: 829 LRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867
              L +L L HN     +   +     L++L  S N  +
Sbjct: 317 FDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 5e-17
 Identities = 71/387 (18%), Positives = 128/387 (33%), Gaps = 85/387 (21%)

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSA 568
           N+   +   +S +   +P     S  Q   L+L++ QI  EI          +  L +  
Sbjct: 45  NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 569 NNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI 624
           N +   LP         + VL L +N LS S+   + H  N  +L   +++ +N L    
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH--NTPKL-TTLSMSNNNLERIE 157

Query: 625 PDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET 684
            D +     L  L+L +N+ T  +   L  +  L   ++  N LS     +L     +E 
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEE 209

Query: 685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGT 744
           +D   N  +  V          + IL L+ N       L   +   L  + L+ N     
Sbjct: 210 LDASHNSIN-VVRG---PVNVELTILKLQHNNLTDTAWLL--NYPGLVEVDLSYNE---- 259

Query: 745 IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAV 804
                                 ++      F                             
Sbjct: 260 ----------------------LEKIMYHPFVK--------------------------- 270

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
           ++ L  + +SNN+    +      +  L+ L+LSHN     +  N      LE+L    N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 865 RLEGEIPKNTVNLVFLSHFNISYNNLS 891
            +   +  +T     L +  +S+N+  
Sbjct: 329 SIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 41/259 (15%)

Query: 633 YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF 692
               + +D              L+  + +  +N+ +       L +  ++E +++ + + 
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNF 752
              +  +       +  L +  N    + P    ++  L +LVL  N+LS ++P      
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR----- 134

Query: 753 TAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID 812
                F  +  + T+      S      N         L  +E  T         L N+ 
Sbjct: 135 ---GIFHNTPKLTTL----SMSN-----N--------NLERIEDDTF---QATTSLQNLQ 171

Query: 813 LSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK 872
           LS+N+ +  +   ++++  L   N+S+N  S      +     +E LD S N +   +  
Sbjct: 172 LSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG 222

Query: 873 NTVNLVFLSHFNISYNNLS 891
                V L+   + +NNL+
Sbjct: 223 PV--NVELTILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 33/261 (12%), Positives = 78/261 (29%), Gaps = 43/261 (16%)

Query: 640 DNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAW 699
                   + ++L    +   +H+                   + +    +     +PA 
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAA 63

Query: 700 IGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-F 758
           + + F ++ +L L   +   +      +   ++ L +  N +    P    N   +    
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKF 818
           L  + + ++         G F N                          LT + +SNN  
Sbjct: 124 LERNDLSSLP-------RGIFHN-----------------------TPKLTTLSMSNNNL 153

Query: 819 SGEIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL 877
              I  +       L++L LS N  +  +   +  +  L   + S N L   +       
Sbjct: 154 E-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLA----IP 204

Query: 878 VFLSHFNISYNNLSGEVPDEA 898
           + +   + S+N+++  V    
Sbjct: 205 IAVEELDASHNSIN-VVRGPV 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  134 bits (340), Expect = 1e-33
 Identities = 102/542 (18%), Positives = 173/542 (31%), Gaps = 110/542 (20%)

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC--------- 263
              L         L+  P     N  S      + ++++ +                   
Sbjct: 10  NTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 264 ---NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
                  L+L++      +P+   +   L  L  S N  + L PE       L   + + 
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTEL-PELPQSLKSLLVDNNNL 123

Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV 380
             L         +    ++ L +S N+LE K+P        L+ I +    L        
Sbjct: 124 KALS--------DLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK------ 167

Query: 381 LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSL 440
             +     S  LE +   N  L   L   +     L ++    NS+  ++P       SL
Sbjct: 168 --LPDLPPS--LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL---SL 217

Query: 441 RYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLG 500
             +   NN L   + E+   NL  LT  YA  N L     P+  P   LE L++R  YL 
Sbjct: 218 ESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLK--TLPDLPP--SLEALNVRDNYLT 270

Query: 501 PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQ 560
              P    S   L  LD+S++       +   +      YL+ S+N+I   + +L     
Sbjct: 271 D-LPELPQS---LTFLDVSENIF-----SGLSELPPNLYYLNASSNEIR-SLCDLP--PS 318

Query: 561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLL 620
           L  L++S N L  +LP L   +  L  S N L+                           
Sbjct: 319 LEELNVSNNKLI-ELPALPPRLERLIASFNHLA--------------------------- 350

Query: 621 AGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCT 680
             E+P+   N   L  L ++ N    + P    ++       LR N+    +P    N  
Sbjct: 351 --EVPELPQN---LKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQNLK 399

Query: 681 ELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNN 740
           +L    +  N      P         +  L + S +    +         L+  V   ++
Sbjct: 400 QL---HVETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 741 LS 742
             
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (338), Expect = 2e-33
 Identities = 95/566 (16%), Positives = 186/566 (32%), Gaps = 115/566 (20%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
           INP  +    L       ++    ++P    ++ +      + + +    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
               LR                       L+L+ + LS +            L  L  + 
Sbjct: 61  AVSRLRDCLDRQA--------------HELELNNLGLSSLPE------LPPHLESLVASC 100

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI 283
             L+  P     +  SL+  + +     + L          L +L +S+N  +  +P+ +
Sbjct: 101 NSLTELPE-LPQSLKSLLVDNNNLKAL-SDLPP-------LLEYLGVSNNQLEK-LPE-L 149

Query: 284 QNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDL 343
           QN + L+ +D+ +N    L P+       LE+++  +N+L+  +    L+NL  + ++  
Sbjct: 150 QNSSFLKIIDVDNNSLKKL-PDLP---PSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYA 202

Query: 344 SFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS 403
             N L+ K+P       +L SI      L        L          L ++   N  L 
Sbjct: 203 DNNSLK-KLPDLP---LSLESIVAGNNILEE------LPELQNLPF--LTTIYADNNLLK 250

Query: 404 GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLS 463
            +L +     + LN  D     +            SL +LD+S N  +G           
Sbjct: 251 -TLPDLPPSLEALNVRDNYLTDLPEL-------PQSLTFLDVSENIFSGLSELP-----P 297

Query: 464 SLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGI 523
           +L +  AS N +   +  +  P   LEEL++ +  L    P+       L  L  S + +
Sbjct: 298 NLYYLNASSNEIR--SLCDLPP--SLEELNVSNNKLIE-LPALPPR---LERLIASFNHL 349

Query: 524 VDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVM 583
              +P            L +  N +  E P+      +  L +  N+   ++P L  N+ 
Sbjct: 350 A-EVPE----LPQNLKQLHVEYNPLR-EFPD--IPESVEDLRM--NSHLAEVPELPQNLK 399

Query: 584 VLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNK 643
            L +  N L                              E PD   +   +  LR+++ +
Sbjct: 400 QLHVETNPLR-----------------------------EFPDIPES---VEDLRMNSER 427

Query: 644 FTGKLPTSLGALSLLRSLHLRNNNLS 669
                  +      L      +++  
Sbjct: 428 VVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 88/494 (17%), Positives = 141/494 (28%), Gaps = 121/494 (24%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           L+     ++ L+  +  +    K       + +      P   G+   +    + +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 452 GTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
                              +   L+ L   P       LE L      L    P    S 
Sbjct: 72  ------------QAHELELNNLGLSSLPELP-----PHLESLVASCNSLTE-LPELPQSL 113

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
             L+  + +                    YL +SNNQ+  ++P L   S L  +D+  N+
Sbjct: 114 KSLLVDNNNL--------KALSDLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNS 164

Query: 571 LSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
           L  +LP L  ++  +    N+L                L ++ NL               
Sbjct: 165 LK-KLPDLPPSLEFIAAGNNQL--------------EELPELQNLPF------------- 196

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
              L  +  DNN    KLP    +L    S+   NN L   LP  L N   L TI    N
Sbjct: 197 ---LTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE-ELP-ELQNLPFLTTIYADNN 247

Query: 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750
                +P         +  L +R N      P     L FL +      N+   +     
Sbjct: 248 LLK-TLPDLPPS----LEALNVRDNYLTD-LPELPQSLTFLDVS----ENIFSGLSELPP 297

Query: 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTN 810
           N                                       L     +  +   +   L  
Sbjct: 298 NLY------------------------------------YLNASSNEIRSLCDLPPSLEE 321

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI 870
           +++SNNK   E+PA       L  L  S N  +  +PE       L+ L    N L  E 
Sbjct: 322 LNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EF 372

Query: 871 PKNTVNLVFLSHFN 884
           P    ++  L   +
Sbjct: 373 PDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 7e-18
 Identities = 48/299 (16%), Positives = 88/299 (29%), Gaps = 63/299 (21%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
           P L +   L  +    N      + +      +L  +             ++ NL  L  
Sbjct: 189 PELQNLPFLTAIYADNN-----SLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTT 241

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLEN--------------LDLSGVDLSKVSNGPLVTN 211
           +    N L  L  +    L  L++ +N              LD+S    S +S  P    
Sbjct: 242 IYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP---- 296

Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL-YGLCNLVFLDL 270
              +L  L  +  ++     L      SL  L++S+N+        +L      L  L  
Sbjct: 297 --PNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKL------IELPALPPRLERLIA 344

Query: 271 SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL---------------IPEWLNKFSRLEY 315
           S N+    +P+  QN   L+ L +  N                    + E       L+ 
Sbjct: 345 SFNHLAE-VPELPQN---LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400

Query: 316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH 374
           L + +N L         +   S++ L ++   +      +      L           H
Sbjct: 401 LHVETNPL-----REFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.0 bits (190), Expect = 8e-15
 Identities = 63/374 (16%), Positives = 119/374 (31%), Gaps = 68/374 (18%)

Query: 534 SITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL 592
           S T        ++ +  E+P     V        + +      P        + +S+ + 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR- 66

Query: 593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSL 652
                   C +     L     L +  L   +P+   +   L  L    N  T +LP   
Sbjct: 67  -------DCLDRQAHEL----ELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELP 110

Query: 653 GALSLLRSLHLRNNNLSGTLPV---------------SLGNCTELETIDIGENEFSGNVP 697
            +L  L   +     LS   P+                L N + L+ ID+  N     +P
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP 169

Query: 698 AWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT 757
                  P +  +   +N+     P EL +L FL  +    N+L   +P    +  ++  
Sbjct: 170 DLP----PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI-- 220

Query: 758 FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK 817
             G++ +       +         +T  + +  L+       T   +   L  +++ +N 
Sbjct: 221 VAGNNIL------EELPELQNLPFLTTIYADNNLLK------TLPDLPPSLEALNVRDNY 268

Query: 818 FSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL 877
            + ++P     L  L       +  S   P        L  L+ SSN +   +     +L
Sbjct: 269 LT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDLPPSL 319

Query: 878 VFLSHFNISYNNLS 891
             L   N+S N L 
Sbjct: 320 EEL---NVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 59/340 (17%), Positives = 117/340 (34%), Gaps = 56/340 (16%)

Query: 559 SQLGTLDLSANNLSGQLPLLASNVM---VLDLSKNKLSGSILHFVCHETNGTRLTQIINL 615
           + L      ++NL+ ++P+ A NV        + ++   +                    
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP------------PGNGEQ 57

Query: 616 EDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVS 675
            +  +   + DC    R    L L+N   +  LP     L    SL    N+L+  LP  
Sbjct: 58  REMAV-SRLRDCLD--RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPEL 109

Query: 676 LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILV 735
             +   L   +      S           P +  L + +N+   +   EL + +FLKI+ 
Sbjct: 110 PQSLKSLLVDNNNLKALSDL--------PPLLEYLGVSNNQLEKLP--ELQNSSFLKIID 159

Query: 736 LAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLE 795
           +  N+L   +P    +   +    G++ +       +         +T  + +   +   
Sbjct: 160 VDNNSLK-KLPDLPPSLEFI--AAGNNQL------EELPELQNLPFLTAIYADNNSLK-- 208

Query: 796 GKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL 855
                   +   L +I   NN        E+  L  L ++   +N     +P+   +   
Sbjct: 209 ----KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS--- 258

Query: 856 LESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
           LE+L+   N L  ++P+   +L FL      ++ LS   P
Sbjct: 259 LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 22/177 (12%)

Query: 728 LAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787
             FL+  +   +NL+  +P    N  +   +  + S +    P      G+   +    +
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN---GEQREMAVSRL 65

Query: 788 EEELIT------LEGKTLT-FKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN 840
            + L        L    L+    +   L ++  S N  + E+P     L+ L   N +  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 841 FFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
             S   P       LLE L  S+N+LE ++P+   N  FL   ++  N+L  ++PD 
Sbjct: 125 ALSDLPP-------LLEYLGVSNNQLE-KLPELQ-NSSFLKIIDVDNNSLK-KLPDL 171

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 3e-32
 Identities = 47/323 (14%), Positives = 101/323 (31%), Gaps = 30/323 (9%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
               L   G+  +    + +         +    +             + +  +    +G
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-------AWRQANSNNPQIETRTG 65

Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
             L   ++  L        + L+L    L  FP       S L  + +         +  
Sbjct: 66  RALKATAD-LLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLME--LPD 121

Query: 258 QLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSS-NHFSYL--------IPEWLN 308
            +     L  L L+ N  +  +P +I +   LR L + +    + L              
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 309 KFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
               L+ L L    ++   +S  + NL +++SL +  + L   +  +      L  + L 
Sbjct: 181 GLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG 428
           G       +     IF G     L+ L L + +   +L   I +   L  +DL       
Sbjct: 238 G----CTALRNYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 429 QVPWSLGKLSSLRYLDISNNQLN 451
           ++P  + +L +   + +  +   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (283), Expect = 3e-27
 Identities = 47/251 (18%), Positives = 95/251 (37%), Gaps = 24/251 (9%)

Query: 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNL 168
                 + L L        Q P     + +L+ + +  AG +  +P+ +   + L+ L L
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTL 134

Query: 169 RPNYLGGLYVEDLGWLYDLSLLENLDLSGV-DLSKV------SNGPLVTNALRSLLVLQL 221
             N L  L       +  L+ L  L +    +L+++      ++       L +L  L+L
Sbjct: 135 ARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 222 AGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
               +   P  S+AN  +L +L + ++    S +   ++ L  L  LDL         P 
Sbjct: 191 EWTGIRSLPA-SIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 282 TIQNWTSLRHLDLSS-NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSV--LLENLSSI 338
                  L+ L L   ++   L P  +++ ++LE L L        +S +  L+  L + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCV---NLSRLPSLIAQLPAN 303

Query: 339 QSLDLSFNELE 349
             + +  +   
Sbjct: 304 CIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 2e-23
 Identities = 56/325 (17%), Positives = 110/325 (33%), Gaps = 28/325 (8%)

Query: 262 LCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSN 321
                 L    +    P  D +  W    + D +  H ++         +  +  + +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGR 66

Query: 322 RLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVL 381
            L+     +         +L+L    L  + P    R  +L+ +++    L      ++ 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-----MELP 120

Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGK----- 436
                     LE+L L+   L  +L   I     L  + +       ++P  L       
Sbjct: 121 DTMQQFAG--LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 437 ----LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEEL 492
               L +L+ L +    +    + I  ANL +L       + L+    P    + +LEEL
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASI--ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552
           DLR C     +P     +  L  L + D   + T+P    + +TQ   L L        +
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRL 293

Query: 553 PN-LTEVSQLGTLDLSANNLSGQLP 576
           P+ + ++     + +   +L  QL 
Sbjct: 294 PSLIAQLPANCIILVP-PHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 6e-23
 Identities = 55/380 (14%), Positives = 106/380 (27%), Gaps = 81/380 (21%)

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDL 566
            H  +   NL    S  +    +     ++Q+     ++             +       
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 567 SANNLSGQLPLL----ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG 622
           +   L     LL        + L+L    L           ++   +     ++   L  
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM----TIDAAGLM- 117

Query: 623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNC--- 679
           E+PD    +  L  L L  N     LP S+ +L+ LR L +R       LP  L +    
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 680 ------TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKI 733
                   L+++ +       ++PA I      +  L +R++         + HL  L+ 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233

Query: 734 LVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT 793
           L L G       P                                               
Sbjct: 234 LDLRGCTALRNYPPIFGG------------------------------------------ 251

Query: 794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAM 853
                         L  + L +      +P +I  L +L  L+L       R+P  I  +
Sbjct: 252 -----------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 854 ALLESLDFSSNRLEGEIPKN 873
                +    + L+ ++ ++
Sbjct: 301 PANCIILVPPH-LQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 60/347 (17%), Positives = 113/347 (32%), Gaps = 31/347 (8%)

Query: 404 GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLS 463
           GS  +         ++    ++        L +       D      N   S    AN +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNAD-----RNRWHSAWRQANSN 56

Query: 464 SLTFFYASRNSLT-LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSG 522
           +      +  +L                 L+LRS  L P FP      +HL ++ I  +G
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG 115

Query: 523 IVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLASN 581
           ++  +P+   +       L+L+ N +   +P  +  +++L  L + A     +LP     
Sbjct: 116 LM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP----- 167

Query: 582 VMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDN 641
                  +   S           N   L     LE   +   +P    N + L  L++ N
Sbjct: 168 -------EPLASTDASGEHQGLVNLQSL----RLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 642 NKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIG 701
           +  +  L  ++  L  L  L LR        P   G    L+ + + +      +P  I 
Sbjct: 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 702 ERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTC 748
            R  ++  L LR        P  +  L    I+++   +L   +   
Sbjct: 275 -RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 51/340 (15%), Positives = 112/340 (32%), Gaps = 58/340 (17%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
            E+L    +T      + + +++   + D +         W     ++ +    +   L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
            T   +  A              L                           FP      +
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-------------------------QFPDQAFRLS 104

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANN 570
           HL ++ I  +G++  +P+   +       L+L+ N +   +P  +  +++L  L + A  
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

Query: 571 LSGQLP------------LLASNVMVLDLSKNKLSG---SILHFVCHETNGTRLTQIINL 615
              +LP                N+  L L    +     SI +          L + + +
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-------QNL-KSLKI 213

Query: 616 EDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVS 675
            ++ L+  +     +   L  L L         P   G  + L+ L L++ +   TLP+ 
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 676 LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSN 715
           +   T+LE +D+        +P+ I  + P   I+++  +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 43/273 (15%), Positives = 82/273 (30%), Gaps = 35/273 (12%)

Query: 630 NWRYLLVLRLDNNKFTGKLPTSLGALSL--LRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
           N     +               L   +     +L LR+  L    P      + L+ + I
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT 747
                   +P  +  +F  +  L L  N      P  +  L  L+ L +        +P 
Sbjct: 112 DAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 748 CISNFTAMATFLGSDSIYT--IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
            +++  A     G  ++ +  +++    S P    N                       L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN-----------------------L 205

Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSS-N 864
           + L ++ + N+  S  +   I  L +L  L+L         P   G  A L+ L     +
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 865 RLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
            L   +P +   L  L   ++        +P  
Sbjct: 265 NLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 7e-16
 Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 25/205 (12%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN---------LSNL 163
            L  L L+ N  +   +P  + S+  LR L +     +  +P  + +         L NL
Sbjct: 128 GLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
           Q L L    +  L    +    +L  L++L +    LS +       + L  L  L L G
Sbjct: 186 QSLRLEWTGIRSL-PASIA---NLQNLKSLKIRNSPLSAL---GPAIHHLPKLEELDLRG 238

Query: 224 C-QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIA--TQLYGLCNLVFLDLSDNNFQGPIP 280
           C  L ++PP      + L  L L      ++L+     ++ L  L  LDL        +P
Sbjct: 239 CTALRNYPP-IFGGRAPLKRLILKDC---SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 281 DTIQNWTSLRHLDLSSNHFSYLIPE 305
             I    +   + +  +  + L   
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 36/276 (13%), Positives = 64/276 (23%), Gaps = 73/276 (26%)

Query: 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENE 691
                L    +         L       +      +          N    +        
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRA 67

Query: 692 FSGNVPAWIGE-RFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750
                   + +   P  + L LRS      FP +   L+ L+ + +    L   +P  + 
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTN 810
                                                                    L  
Sbjct: 125 Q-----------------------------------------------------FAGLET 131

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL---------LESLDF 861
           + L+ N     +PA I  L  LR L++        +PE + +            L+SL  
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 862 SSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
               +   +P +  NL  L    I  + LS  +   
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  126 bits (318), Expect = 6e-32
 Identities = 56/271 (20%), Positives = 102/271 (37%), Gaps = 23/271 (8%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
           I+    +        ++ +  K   +     S  N++ LDLSG     +    +   + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
           + LNL  N L      +   L  LS L  LDL+   + ++  GP       S+  L  A 
Sbjct: 61  ELLNLSSNVL-----YETLDLESLSTLRTLDLNNNYVQELLVGP-------SIETLHAAN 108

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG-PIPDT 282
             +S       +       + L++N+    L          + +LDL  N        + 
Sbjct: 109 NNISRVSC---SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
             +  +L HL+L  N    +  + +  F++L+ L LSSN+L   +     ++ + +  + 
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWIS 220

Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
           L  N+L   I ++     NL    L G    
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (315), Expect = 2e-31
 Identities = 54/313 (17%), Positives = 110/313 (35%), Gaps = 25/313 (7%)

Query: 186 DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDL 245
           + +  +   ++   L +         +  ++  L L+G  LS      +A F+ L  L+L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 246 SHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPE 305
           S N    +     L  L  L  LDL++N  Q      +    S+  L  ++N+ S +   
Sbjct: 66  SSNVLYET---LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCS 117

Query: 306 WLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRS 364
              +    + + L++N++   +  +     S +Q LDL  NE++        +    L  
Sbjct: 118 ---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 365 ISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSEN 424
           ++L    +          +    V   L++LDLS+  L+  +  +      +  + L  N
Sbjct: 174 LNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 425 SISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV 484
            +   +  +L    +L + D+  N  +       F+    +              N    
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 485 PVFQLEELDLRSC 497
            V  L       C
Sbjct: 284 TVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (288), Expect = 5e-28
 Identities = 54/332 (16%), Positives = 118/332 (35%), Gaps = 28/332 (8%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
                 ++D++ +  +    Q+  +++ LDLS N  S +    L  F++LE L+LSSN L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
              +    LE+LS++++LDL+ N ++           ++ ++  +   +S    S     
Sbjct: 71  YETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCS----R 118

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRY 442
             G      +++ L+N  ++       G    +  +DL  N I             +L +
Sbjct: 119 GQG-----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 443 LDISNNQLNGTVSEI-HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP 501
           L++  N +     ++      + L     S N L     P +     +  + LR+  L  
Sbjct: 174 LNLQYNFI----YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQL 561
                L    +L + D+  +G        F+    +   ++    +   ++    E    
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECT 284

Query: 562 GTLDLSANNLSGQLPLLASNVMVLDLSKNKLS 593
                       +         ++ L  +   
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 41/285 (14%)

Query: 459 FANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDI 518
             N +       + +SL           + ++ELDL              S N L     
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDL--------------SGNPL----- 46

Query: 519 SDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLL 578
                   I        T+   L+LS+N ++ E  +L  +S L TLDL+ N +  +L + 
Sbjct: 47  ------SQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELLVG 98

Query: 579 ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLR 638
             ++  L  + N +S  +       + G    + I L +N +             +  L 
Sbjct: 99  -PSIETLHAANNNIS-RV-----SCSRGQGK-KNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 639 LDNNKFTG-KLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVP 697
           L  N+           +   L  L+L+ N +   +   +    +L+T+D+  N+ +  + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMG 207

Query: 698 AWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
                    +  + LR+NK   +    L     L+   L GN   
Sbjct: 208 PEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.7 bits (210), Expect = 8e-18
 Identities = 47/288 (16%), Positives = 94/288 (32%), Gaps = 46/288 (15%)

Query: 605 NGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLR 664
           NG R  +I  + D+ L   +     +   +  L L  N  +      L   + L  L+L 
Sbjct: 8   NGNRY-KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 665 NNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE 724
           +N L       L + + L T+D+  N     +        P +  L   +N       + 
Sbjct: 67  SNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISR---VS 115

Query: 725 LCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDSIYTIQYPSDFSFPGKFFNIT 783
                  K + LA N ++          + +    L  + I T+ +    +         
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-------- 167

Query: 784 EQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS 843
                                   L +++L  N    ++  ++    +L++L+LS N  +
Sbjct: 168 ---------------------SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

Query: 844 GRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
             +     + A +  +   +N+L   I K       L HF++  N   
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 62/239 (25%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
                  + YL+L  N+   +       S   L  L+L          N I ++      
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY--------NFIYDVKGQVV- 189

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
                                + L+ LDLS                            +L
Sbjct: 190 --------------------FAKLKTLDLS--------------------------SNKL 203

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ-GPIPDTIQN 285
           +   P    + + +  + L +N+    LI   L    NL   DL  N F  G + D    
Sbjct: 204 AFMGP-EFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
              ++ +   +      +     +   +  L          + +   + L ++      
Sbjct: 261 NQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  125 bits (316), Expect = 8e-32
 Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 8/238 (3%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSG--AGFVGMIPNQIGNLSNLQYLNL 168
                 L L  N  + +        +  L  L LS     F G         ++L+YL+L
Sbjct: 27  PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 169 RPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSH 228
             N +  +          L  LE+LD    +L ++S   +  + LR+L+ L ++      
Sbjct: 86  SFNGVITM----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRV 140

Query: 229 FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTS 288
                    SSL  L ++ N F  + +      L NL FLDLS    +   P    + +S
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
           L+ L++S N+F  L        + L+ L  S N +       L    SS+  L+L+ N
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (272), Expect = 5e-26
 Identities = 63/287 (21%), Positives = 103/287 (35%), Gaps = 42/287 (14%)

Query: 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN 252
           +  +   L+ V   P  T    S   L+L   +L   P       + L  L LS N    
Sbjct: 12  IRCNSKGLTSV---P--TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 253 -SLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPE-WLNKF 310
               +   +G  +L +LDLS N     +         L HLD   ++   +         
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN-ELEWKIPRSFSRFCNLRSISLSG 369
             L YL +S    +    + +   LSS++ L ++ N   E  +P  F+   NL  + LS 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 370 IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ 429
            QL                        LS T  +  L++       L  +++S N+    
Sbjct: 185 CQLEQ----------------------LSPTAFNS-LSS-------LQVLNMSHNNFFSL 214

Query: 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL-SSLTFFYASRNSL 475
             +    L+SL+ LD S N +  T  +    +  SSL F   ++N  
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (262), Expect = 1e-24
 Identities = 60/265 (22%), Positives = 95/265 (35%), Gaps = 36/265 (13%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHF--PPLSVANFSSLVTLDLSH 247
              L+L    L  + +G    + L  L  L L+   LS       S    +SL  LDLS 
Sbjct: 30  ATRLELESNKLQSLPHGVF--DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 248 NQFDNSLIATQLYGLCNLVFLDLSDNNFQG-PIPDTIQNWTSLRHLDLSSNHFSYLIPEW 306
           N      +++   GL  L  LD   +N +         +  +L +LD+S  H        
Sbjct: 88  NGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
            N  S LE L ++ N  Q      +   L ++  LDLS  +LE   P +F+   +L+ ++
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI 426
           +S               +    S  L+ LD S         N I              + 
Sbjct: 206 MSHNNFFSLDTF----PYKCLNS--LQVLDYSL--------NHI-------------MTS 238

Query: 427 SGQVPWSLGKLSSLRYLDISNNQLN 451
             Q        SSL +L+++ N   
Sbjct: 239 KKQELQHF--PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 6e-23
 Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 34/288 (11%)

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR 322
           C+   +  +       +P  I   +S   L+L SN    L     +K ++L  LSLSSN 
Sbjct: 7   CSGTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 323 LQGR-ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVL 381
           L  +   S      +S++ LDLSFN +   +  +F     L  +      L         
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ------- 115

Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLR 441
                          +S  ++  SL N       L  +D+S              LSSL 
Sbjct: 116 ---------------MSEFSVFLSLRN-------LIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 442 YLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP 501
            L ++ N          F  L +LTF   S+  L   +   +  +  L+ L++       
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
                    N L  LD S + I+ +         +   +L+L+ N   
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 6/174 (3%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
           ++   L  E L +L+  +++ K +       S+ NL +LD+S              LS+L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
           + L +  N     ++ D+    +L  L  LDLS   L ++S      N+L SL VL ++ 
Sbjct: 153 EVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSH 208

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC-NLVFLDLSDNNFQ 276
                         +SL  LD S N    +    +L     +L FL+L+ N+F 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 53/287 (18%), Positives = 95/287 (33%), Gaps = 45/287 (15%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
             +  +   ++  VP  +   SS   L++ +N+L  ++    F  L+ LT    S N L+
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 477 LKANPN--WVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
            K   +        L+ LDL    +     S       L +LD   S +        + S
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 535 ITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLS 588
           +    YL +S+        N     +S L  L ++ N+              N+  LDLS
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 589 KNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL 648
           + +L                      L                  L VL + +N F    
Sbjct: 184 QCQLE--------------------QLSPTAFNS--------LSSLQVLNMSHNNFFSLD 215

Query: 649 PTSLGALSLLRSLHLRNNNLSGTLPVSL--GNCTELETIDIGENEFS 693
                 L+ L+ L    N++  T          + L  +++ +N+F+
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 40/217 (18%), Positives = 87/217 (40%), Gaps = 19/217 (8%)

Query: 540 YLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQ-LPLLA----SNVMVLDLSKNKL 592
            L L +N++   +P+    +++QL  L LS+N LS +     +    +++  LDLS N +
Sbjct: 32  RLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC--WMNWRYLLVLRLDNNKFTGKLPT 650
                +F        +L + ++ + + L  ++ +   +++ R L+ L + +         
Sbjct: 91  ITMSSNF----LGLEQL-EHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 651 SLGALSLLRSLHLRNNN-LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII 709
               LS L  L +  N+     LP        L  +D+ + +    +          + +
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
           L +  N F  +       L  L++L  + N++  T  
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK 239

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 62/288 (21%)

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK--LPTSLGALSLLRSLHLRNNN 667
              + LE N L       +     L  L L +N  + K     S    + L+ L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 668 LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCH 727
           +  T+  +     +LE +D   +         +      +I L +        F      
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 728 LAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787
           L+ L++L +AGN+                                   P  F        
Sbjct: 149 LSSLEVLKMAGNSFQENFL-----------------------------PDIFTE------ 173

Query: 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITV-LRELRSLNLSHNFFSGRI 846
                            LR LT +DLS  +   ++       L  L+ LN+SHN F   +
Sbjct: 174 -----------------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SL 214

Query: 847 PENI-GAMALLESLDFSSNRLEGEIPKNTVNLVF--LSHFNISYNNLS 891
                  +  L+ LD+S N +     K  +      L+  N++ N+ +
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 47/259 (18%), Positives = 75/259 (28%), Gaps = 62/259 (23%)

Query: 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS-GN 695
           +R ++   T  +PT +   S    L L +N L           T+L  + +  N  S   
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
             +        +  L L  N    +       L  L+ L    +NL              
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK------------- 114

Query: 756 ATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815
                      +   S F                               LR L  +D+S+
Sbjct: 115 ----------QMSEFSVFLS-----------------------------LRNLIYLDISH 135

Query: 816 NKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSNRLEGEIPKN 873
                     I   L  L  L ++ N F      +I   +  L  LD S  +LE ++   
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 193

Query: 874 T-VNLVFLSHFNISYNNLS 891
              +L  L   N+S+NN  
Sbjct: 194 AFNSLSSLQVLNMSHNNFF 212

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  121 bits (306), Expect = 3e-30
 Identities = 54/312 (17%), Positives = 106/312 (33%), Gaps = 36/312 (11%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           +   LDL       +      NL NL  L L  N +  +     G    L  LE L LS 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI---SPGAFAPLVKLERLYLSK 109

Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
             L ++          ++L  L++   +++          + ++ ++L  N   +S I  
Sbjct: 110 NQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 258 Q-LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316
               G+  L ++ ++D N    IP  +    SL  L L  N  + +    L   + L  L
Sbjct: 165 GAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 317 SLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQK 376
            LS N +   + +  L N   ++ L L+ N+L  K+P   +    ++ + L    +S   
Sbjct: 222 GLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 377 VSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGK 436
            +                + L +        N +         ++  ++           
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFS--------NPV------QYWEIQPSTFRC-------- 317

Query: 437 LSSLRYLDISNN 448
           +     + + N 
Sbjct: 318 VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 4e-28
 Identities = 56/275 (20%), Positives = 95/275 (34%), Gaps = 29/275 (10%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNL-----S 161
              + ++L  L L  N    I  P     +  L  L LS         NQ+  L      
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSK--------NQLKELPEKMPK 121

Query: 162 NLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQL 221
            LQ L +  N +  +          L+ +  ++L    L            ++ L  +++
Sbjct: 122 TLQELRVHENEITKV---RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 222 AGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
           A   ++  P        SL  L L  N+    + A  L GL NL  L LS N+       
Sbjct: 179 ADTNITTIPQ---GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ-----GRISSVLLENLS 336
           ++ N   LR L L++N     +P  L     ++ + L +N +                 +
Sbjct: 235 SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 337 SIQSLDLSFNELE-WKIPRS-FSRFCNLRSISLSG 369
           S   + L  N ++ W+I  S F       ++ L  
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 2e-25
 Identities = 56/315 (17%), Positives = 118/315 (37%), Gaps = 27/315 (8%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
           L  +  S + L KV   P   +      +L L   +++        N  +L TL L +N+
Sbjct: 33  LRVVQCSDLGLEKV---P--KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNK 309
             + +       L  L  L LS N  +  +P+ +    +L+ L +  N  + +     N 
Sbjct: 88  I-SKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNG 143

Query: 310 FSRLEYLSLSSNRLQ-GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
            +++  + L +N L+   I +   + +  +  + ++   +   IP+      +L  + L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200

Query: 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG 428
           G +++  KV    A   G  +  L  L LS  ++S      +     L  + L+ N +  
Sbjct: 201 GNKIT--KVDA--ASLKGLNN--LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253

Query: 429 QVPWSLGKLSSLRYLDISNNQL-----NGTVSEIHFANLSSLTFFYASRNSLTLKANPN- 482
           +VP  L     ++ + + NN +     N      +    +S +      N +        
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 483 -WVPVFQLEELDLRS 496
            +  V+    + L +
Sbjct: 314 TFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 8e-25
 Identities = 67/361 (18%), Positives = 118/361 (32%), Gaps = 69/361 (19%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
            L V+Q +   L   P            LDL +N+    +       L NL  L L +N 
Sbjct: 32  HLRVVQCSDLGLEKVPK---DLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
                P        L  L LS N     +PE +     L+ L +  N +  ++   +   
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNG 143

Query: 335 LSSIQSLDLSFNELEWKI--PRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
           L+ +  ++L  N L+       +F     L  I ++   ++   + Q L          L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGL--PPS-----L 194

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
             L L          N+I K        +   S+ G        L++L  L +S N ++ 
Sbjct: 195 TELHLDG--------NKITK--------VDAASLKG--------LNNLAKLGLSFNSIS- 229

Query: 453 TVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF-QLEELDLRSCYLGPPFPSWLHSQN 511
            V     AN   L   + + N L     P  +     ++ + L                N
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYL--------------HNN 273

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI-HGEIPNLT--EVSQLGTLDLSA 568
           ++  +  +     D  P  +      ++ +SL +N + + EI   T   V     + L  
Sbjct: 274 NISAIGSN-----DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 569 N 569
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 61/333 (18%), Positives = 107/333 (32%), Gaps = 74/333 (22%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKA 479
           DL  N I+         L +L  L + NN+++  +S   FA L  L   Y S+N L    
Sbjct: 58  DLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKE-- 114

Query: 480 NPNWVP--VFQ-LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
               +P  + + L+EL +               +N +             +    +  + 
Sbjct: 115 ----LPEKMPKTLQELRV--------------HENEIT-----------KVRKSVFNGLN 145

Query: 537 QFNYLSLSNNQIH-GEIPN--LTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLS 593
           Q   + L  N +    I N     + +L  + ++  N++     L  ++  L L  NK++
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205

Query: 594 GSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLG 653
                                ++   L G           L  L L  N  +     SL 
Sbjct: 206 --------------------KVDAASLKG--------LNNLAKLGLSFNSISAVDNGSLA 237

Query: 654 ALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS-----GNVPAWIGERFPRMI 708
               LR LHL NN L   +P  L +   ++ + +  N  S        P     +     
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 709 ILILRSNK--FHGVFPLELCHLAFLKILVLAGN 739
            + L SN   +  + P     +     + L   
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 68/432 (15%), Positives = 123/432 (28%), Gaps = 142/432 (32%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           L  V  S+  +  +VP  L        LD+ NN++    +EI   +  +L          
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKI----TEIKDGDFKNLK--------- 76

Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
                        L  L L                N +             I    +  +
Sbjct: 77  ------------NLHTLIL--------------INNKISK-----------ISPGAFAPL 99

Query: 536 TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNK 591
            +   L LS NQ+  E+P       L  L +  N ++ ++        + ++V++L  N 
Sbjct: 100 VKLERLYLSKNQLK-ELPEKM-PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP 156

Query: 592 LSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTS 651
           L                      +E+    G         + L  +R+ +   T  +P  
Sbjct: 157 LK------------------SSGIENGAFQG--------MKKLSYIRIADTNIT-TIPQ- 188

Query: 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711
            G    L  LHL  N ++                 +      G            +  L 
Sbjct: 189 -GLPPSLTELHLDGNKIT----------------KVDAASLKG---------LNNLAKLG 222

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDSIYTIQYP 770
           L  N    V    L +   L+ L L  N L   +P  +++   +   +L +++I  I   
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG-S 280

Query: 771 SDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFS-GEIPAEI-TV 828
           +DF  PG                               + + L +N     EI       
Sbjct: 281 NDFCPPGYNTK-----------------------KASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 829 LRELRSLNLSHN 840
           +    ++ L + 
Sbjct: 318 VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 73/396 (18%), Positives = 122/396 (30%), Gaps = 113/396 (28%)

Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLS 567
           Q HL  +  SD G+ + +P            L L NN+I  EI +     +  L TL L 
Sbjct: 30  QCHLRVVQCSDLGL-EKVPKDLPPDTA---LLDLQNNKIT-EIKDGDFKNLKNLHTLILI 84

Query: 568 ANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE 623
            N +S ++   A      +  L LSKN+L                      L + +    
Sbjct: 85  NNKIS-KISPGAFAPLVKLERLYLSKNQLK--------------------ELPEKMPKT- 122

Query: 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTL--PVSLGNCTE 681
                     L  LR+  N+ T    +    L+ +  + L  N L  +     +     +
Sbjct: 123 ----------LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
           L  I I +   +  +P  +    P +  L L  NK   V    L  L  L  L L+ N++
Sbjct: 173 LSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 742 SGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTF 801
           S  +                               G   N                    
Sbjct: 229 S-AVD-----------------------------NGSLAN-------------------- 238

Query: 802 KAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN-------IGAMA 854
                 L  + L+NNK   ++P  +   + ++ + L +N  S  I  N           A
Sbjct: 239 ---TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKA 293

Query: 855 LLESLDFSSNRLE-GEIPKNT-VNLVFLSHFNISYN 888
               +   SN ++  EI  +T   +   +   +   
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 52/261 (19%), Positives = 89/261 (34%), Gaps = 45/261 (17%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
           +L L NNK T         L  L +L L NN +S   P +     +LE + + +N+    
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL-SGTIPTCISNFTA 754
           +P    +    +  L +  N+   V       L  + ++ L  N L S  I         
Sbjct: 115 LPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN------- 164

Query: 755 MATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTF--KAVLRLLTNID 812
              F G   +                           I +    +T   + +   LT + 
Sbjct: 165 -GAFQGMKKL-------------------------SYIRIADTNITTIPQGLPPSLTELH 198

Query: 813 LSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSNRLEGEI 870
           L  NK + ++ A     L  L  L LS N  S  +          L  L  ++N+L  ++
Sbjct: 199 LDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 871 PKNTVNLVFLSHFNISYNNLS 891
           P    +  ++    +  NN+S
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 20/200 (10%)

Query: 704 FPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSD 762
            P   +L L++NK   +   +  +L  L  L+L  N +S   P   +    +   +L  +
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 763 SIYTIQYPSDFSFPGKFFNITEQFVEE-ELITLEGKTLTFKAVLRLLTNIDLSNNKF-SG 820
            +  +              + E  V E E+  +          L  +  ++L  N   S 
Sbjct: 111 QLKELP-------EKMPKTLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSS 160

Query: 821 EIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT-VNLV 878
            I       +++L  + ++    +  IP+  G    L  L    N++  ++   +   L 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLN 216

Query: 879 FLSHFNISYNNLSGEVPDEA 898
            L+   +S+N++S  V + +
Sbjct: 217 NLAKLGLSFNSIS-AVDNGS 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  121 bits (306), Expect = 3e-30
 Identities = 58/337 (17%), Positives = 119/337 (35%), Gaps = 39/337 (11%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY 172
           HL  +  S    K   +P+ +    +   LDL       +  +    L +L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 173 LGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPL 232
           +  +          L  L+ L +S   L ++           SL+ L++   ++   P  
Sbjct: 90  ISKI---HEKAFSPLRKLQKLYISKNHLVEIPPN-----LPSSLVELRIHDNRIRKVPKG 141

Query: 233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292
             +   ++  +++  N  +NS      +    L +L +S+    G IP  +    +L  L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNEL 198

Query: 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI 352
            L  N    +  E L ++S+L  L L  N+++  I +  L  L +++ L L  N+L  ++
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 353 PRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGK 412
           P        L+ + L    ++   V+    +  G        + L N        N +  
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN--------NPV-- 306

Query: 413 FKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
                  ++   +           ++    +   N +
Sbjct: 307 ----PYWEVQPATFRC--------VTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (275), Expect = 3e-26
 Identities = 50/275 (18%), Positives = 94/275 (34%), Gaps = 32/275 (11%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNL-----S 161
                +HL  L L  N    I   +    +  L+ L +S         N +  +     S
Sbjct: 73  DFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISK--------NHLVEIPPNLPS 123

Query: 162 NLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQL 221
           +L  L +  N +  +     G    L  +  +++ G  L      P   + L  L  L++
Sbjct: 124 SLVELRIHDNRIRKV---PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179

Query: 222 AGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
           +  +L+  P        +L  L L HN+   ++    L     L  L L  N  +     
Sbjct: 180 SEAKLTGIPK---DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS------VLLENL 335
           ++    +LR L L +N  S  +P  L     L+ + L +N +  ++              
Sbjct: 236 SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 336 SSIQSLDLSFNELEWKI--PRSFSRFCNLRSISLS 368
           +    + L  N + +    P +F    +  +I   
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (265), Expect = 7e-25
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 20/247 (8%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
           A      L  L +S N    I          +L  L +       +       L N+  +
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
            +  N L     E  G    L L   L +S   L+ +           +L  L L   ++
Sbjct: 153 EMGGNPLENSGFEP-GAFDGLKLNY-LRISEAKLTGIPKD-----LPETLNELHLDHNKI 205

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
                  +  +S L  L L HNQ    +    L  L  L  L L +N     +P  + + 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDL 263

Query: 287 TSLRHLDLSSNHFSYLIPE------WLNKFSRLEYLSLSSNRLQ-GRISSVLLENLSSIQ 339
             L+ + L +N+ + +         +  K +    +SL +N +    +       ++   
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 340 SLDLSFN 346
           ++     
Sbjct: 324 AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 4e-24
 Identities = 63/310 (20%), Positives = 108/310 (34%), Gaps = 38/310 (12%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           +   LDL +N+      D  +    L  L L +N  S +  +  +   +L+ L +S N L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
              I   L  +L     L +  N +       FS   N+  I + G  L +         
Sbjct: 115 V-EIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP--GA 168

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
           F G     L  L +S   L+          + LN + L  N I       L + S L  L
Sbjct: 169 FDGL---KLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF-QLEELDLRSCYLGPP 502
            + +NQ+   +     + L +L   +   N L+    P  +P    L+ + L        
Sbjct: 223 GLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYL-------- 271

Query: 503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI-HGEIPNLT--EVS 559
                   N++  + ++D       P  F      +N +SL NN + + E+   T   V+
Sbjct: 272 ------HTNNITKVGVNDFC-----PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 560 QLGTLDLSAN 569
               +     
Sbjct: 321 DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 8e-15
 Identities = 61/316 (19%), Positives = 109/316 (34%), Gaps = 34/316 (10%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           L  V  S+  +   VP  +        LD+ NN ++  + +  F  L  L       N +
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 476 TLKANPNWVPVFQLEELDLRSCYLG--PP--FPSWLHSQNHLVNLDISDSGIVDTIPNRF 531
           +      + P+ +L++L +   +L   PP    S       LV L I D+ I   +P   
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS-------LVELRIHDNRIR-KVPKGV 142

Query: 532 WKSITQFNYLSLSNNQI-HGEIPNLT-EVSQLGTLDLSANNLSGQLPLLASNVMVLDLSK 589
           +  +   N + +  N + +        +  +L  L +S   L+G    L   +  L L  
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202

Query: 590 NKLSG-SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL 648
           NK+    +                + L  N +             L  L LDNNK + ++
Sbjct: 203 NKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 649 PTSLGALSLLRSLHLRNNNLSGTLPVS-------LGNCTELETIDIGENEFS-GNVPAWI 700
           P  L  L LL+ ++L  NN++  + V+                I +  N      V    
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 701 GERFPRMIILILRSNK 716
                  + +   + K
Sbjct: 316 FRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 65/395 (16%), Positives = 112/395 (28%), Gaps = 112/395 (28%)

Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLS 567
             HL  +  SD G+   +P       T    L L NN I  E+       +  L  L L 
Sbjct: 32  HCHLRVVQCSDLGL-KAVPKEISPDTT---LLDLQNNDIS-ELRKDDFKGLQHLYALVLV 86

Query: 568 ANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE 623
            N +S ++   A      +  L +SKN L                      +  NL +  
Sbjct: 87  NNKIS-KIHEKAFSPLRKLQKLYISKNHLV--------------------EIPPNLPSS- 124

Query: 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNL-SGTLPVSLGNCTEL 682
                     L+ LR+ +N+           L  +  + +  N L +        +  +L
Sbjct: 125 ----------LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
             + I E + +  +P    +    +  L L  NK   +   +L   + L  L L  N + 
Sbjct: 175 NYLRISEAKLT-GIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 743 GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFK 802
             I                               G    +                    
Sbjct: 231 -MIE-----------------------------NGSLSFLPT------------------ 242

Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI-------GAMAL 855
                L  + L NNK S  +PA +  L+ L+ + L  N  + ++  N           A 
Sbjct: 243 -----LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 856 LESLDFSSNRLE-GEIPKNT-VNLVFLSHFNISYN 888
              +   +N +   E+   T   +           
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 28/267 (10%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
           +L L NN  +         L  L +L L NN +S     +     +L+ + I +N     
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI--PTCISNFT 753
           +P         ++ L +  N+   V       L  +  + + GN L  +   P       
Sbjct: 117 IPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 754 AMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT-LEGKTLTFKAVLRLLTNID 812
                +    +  I              + E  ++   I  +E + L        L  + 
Sbjct: 174 LNYLRISEAKLTGIP-------KDLPETLNELHLDHNKIQAIELEDL---LRYSKLYRLG 223

Query: 813 LSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP 871
           L +N+    I     + L  LR L+L +N  S R+P  +  + LL+ +   +N +  ++ 
Sbjct: 224 LGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVG 280

Query: 872 KNT-------VNLVFLSHFNISYNNLS 891
            N        V   + +  ++  N + 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 17/177 (9%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
             P   D   L YL +S     GI           L  L L       +    +   S L
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIP----KDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
             L L  N +  +   + G L  L  L  L L    LS+V   P     L+ L V+ L  
Sbjct: 220 YRLGLGHNQIRMI---ENGSLSFLPTLRELHLDNNKLSRV---PAGLPDLKLLQVVYLHT 273

Query: 224 CQLSHFPP------LSVANFSSLVTLDLSHNQFDNSLIATQLY-GLCNLVFLDLSDN 273
             ++                +    + L +N      +    +  + + + +   + 
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  123 bits (310), Expect = 6e-30
 Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 27/245 (11%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG--------NLSN 162
             +  YLNL  N+ + IQ       + +L  L L          N I          L++
Sbjct: 74  PSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGR--------NSIRQIEVGAFNGLAS 124

Query: 163 LQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLA 222
           L  L L  N+L  +     G    LS L  L L    +  + +     N + SL+ L L 
Sbjct: 125 LNTLELFDNWLTVI---PSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLG 179

Query: 223 GC-QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
              +L +    +     +L  L+L      +  +   L  L  L  L++S N+F    P 
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPN-LTPLVGLEELEMSGNHFPEIRPG 236

Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
           +    +SL+ L + ++  S +     +  + L  L+L+ N L   +   L   L  +  L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295

Query: 342 DLSFN 346
            L  N
Sbjct: 296 HLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (275), Expect = 2e-25
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 36/263 (13%)

Query: 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
            +   L L    +      +  +   L  L L  N     +      GL +L  L+L DN
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDN 133

Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS-NRLQGRISSVLL 332
                     +  + LR L L +N    +     N+   L  L L    +L+  IS    
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAF 192

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
           E L +++ L+L    ++  +P + +    L  + +SG                       
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE------------------ 232

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
               +   +  G L++       L  + +  + +S     +   L+SL  L++++N L+ 
Sbjct: 233 ----IRPGSFHG-LSS-------LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS- 279

Query: 453 TVSEIHFANLSSLTFFYASRNSL 475
           ++    F  L  L   +   N  
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (250), Expect = 3e-22
 Identities = 51/227 (22%), Positives = 79/227 (34%), Gaps = 26/227 (11%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------G 158
                 HL  L L  N  + I+       + +L  L+L          N +         
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFD--------NWLTVIPSGAFE 144

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGV-DLSKVSNGPLVTNALRSLL 217
            LS L+ L LR N +  +          +  L  LDL  +  L  +S G      L +L 
Sbjct: 145 YLSKLRELWLRNNPIESI---PSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLK 199

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
            L L  C +   P L+      L  L++S N F   +     +GL +L  L + ++    
Sbjct: 200 YLNLGMCNIKDMPNLT--PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
              +      SL  L+L+ N+ S L  +       L  L L  N   
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 57/331 (17%), Positives = 102/331 (30%), Gaps = 89/331 (26%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
            + V  +   +S +VP  +   S+ RYL++  N +   +    F +L  L      RNS+
Sbjct: 56  FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
                  +  +  L  L+L   +L           + L  L + ++ I  +IP+  +  +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 536 TQFNYLSLSN-NQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA--SNVMVLDLSKN 590
                L L    ++   I       +  L  L+L   N+   +P L     +  L++S N
Sbjct: 171 PSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGN 228

Query: 591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPT 650
                                   +      G           L  L + N++ +     
Sbjct: 229 HFP--------------------EIRPGSFHG--------LSSLKKLWVMNSQVSLIERN 260

Query: 651 SLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIIL 710
           +   L+ L  L+L +NNLS +LP                                     
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLP------------------------------------- 282

Query: 711 ILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
                  H +F      L +L  L L  N  
Sbjct: 283 -------HDLFT----PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 9e-11
 Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 23/245 (9%)

Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLS 567
            N    +  +  G+   +P     +     YL+L  N I   I       +  L  L L 
Sbjct: 53  SNQFSKVVCTRRGL-SEVPQGIPSNTR---YLNLMENNIQ-MIQADTFRHLHHLEVLQLG 107

Query: 568 ANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHET-NGTRLTQIINLEDNLLAG 622
            N++  Q+ + A    +++  L+L  N L+      +           + + L +N +  
Sbjct: 108 RNSIR-QIEVGAFNGLASLNTLELFDNWLT-----VIPSGAFEYLSKLRELWLRNNPIES 161

Query: 623 EIPDCWMNWRYLLVLRL-DNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681
                +     L+ L L +  K       +   L  L+ L+L   N+   +P +L     
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVG 219

Query: 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
           LE +++  N F   +          +  L + +++   +       LA L  L LA NNL
Sbjct: 220 LEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 742 SGTIP 746
           S ++P
Sbjct: 279 S-SLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 46/258 (17%), Positives = 79/258 (30%), Gaps = 59/258 (22%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
            L L  N        +   L  L  L L  N++      +      L T+++ +N  +  
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-V 137

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
           +P+   E   ++  L LR+N    +       +  L  L L        I          
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-------- 189

Query: 756 ATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815
             F G                                            L  L  ++L  
Sbjct: 190 GAFEG--------------------------------------------LFNLKYLNLGM 205

Query: 816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN-IGAMALLESLDFSSNRLEGEIPKNT 874
                ++P  +T L  L  L +S N F   I       ++ L+ L   ++++   I +N 
Sbjct: 206 CNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

Query: 875 -VNLVFLSHFNISYNNLS 891
              L  L   N+++NNLS
Sbjct: 262 FDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 56/286 (19%), Positives = 98/286 (34%), Gaps = 52/286 (18%)

Query: 593 SGSILHFVCHETNGTRL-------TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645
           S      VC     + +       T+ +NL +N +     D + +  +L VL+L  N   
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFP 705
                +   L+ L +L L +N L+     +    ++L  + +  N    ++P++   R P
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP 171

Query: 706 RMIILIL-RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT----FLG 760
            ++ L L    K   +       L  LK L L   N+       + N T +       + 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-----KDMPNLTPLVGLEELEMS 226

Query: 761 SDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG 820
            +    I+       PG F                         L  L  + + N++ S 
Sbjct: 227 GNHFPEIR-------PGSFHG-----------------------LSSLKKLWVMNSQVS- 255

Query: 821 EIPAE-ITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSN 864
            I       L  L  LNL+HN  S  +P ++   +  L  L    N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
           P L     L  L +S N F  I+ P     + +L+ L +  +    +  N    L++L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           LNL  N L  L          L  L  L L  
Sbjct: 271 LNLAHNNLSSL---PHDLFTPLRYLVELHLHH 299

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  121 bits (305), Expect = 3e-29
 Identities = 56/245 (22%), Positives = 88/245 (35%), Gaps = 27/245 (11%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG--------NLSN 162
             +   LNL  N  + I+       + +L  L LS         N I          L+N
Sbjct: 63  STNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSR--------NHIRTIEIGAFNGLAN 113

Query: 163 LQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLA 222
           L  L L  N L  +     G    LS L+ L L    +  + +     N + SL  L L 
Sbjct: 114 LNTLELFDNRLTTI---PNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLG 168

Query: 223 GC-QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
              +LS+    +    S+L  L+L+        I   L  L  L  LDLS N+     P 
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNHLSAIRPG 225

Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
           + Q    L+ L +  +    +     +    L  ++L+ N L   +   L   L  ++ +
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI 284

Query: 342 DLSFN 346
            L  N
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (275), Expect = 2e-25
 Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 36/263 (13%)

Query: 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
            +  +L L   Q+      S  +   L  L LS N    ++      GL NL  L+L DN
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDN 122

Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS-NRLQGRISSVLL 332
                        + L+ L L +N    +     N+   L  L L    RL   IS    
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
           E LS+++ L+L+   L  +IP + +    L  + LSG  LS                   
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA------------------ 221

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
               +   +  G L +       L  + + ++ I      +   L SL  +++++N L  
Sbjct: 222 ----IRPGSFQG-LMH-------LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 453 TVSEIHFANLSSLTFFYASRNSL 475
            +    F  L  L   +   N  
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 8e-23
 Identities = 60/227 (26%), Positives = 88/227 (38%), Gaps = 26/227 (11%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------G 158
           +     HL  L LS N  + I+I  F G + NL  L+L          N++         
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFD--------NRLTTIPNGAFV 133

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGV-DLSKVSNGPLVTNALRSLL 217
            LS L+ L LR N +  +          +  L  LDL  +  LS +S G      L +L 
Sbjct: 134 YLSKLKELWLRNNPIESI---PSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLR 188

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
            L LA C L   P L+      L  LDLS N    ++      GL +L  L +  +  Q 
Sbjct: 189 YLNLAMCNLREIPNLT--PLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
              +   N  SL  ++L+ N+ + L  +       LE + L  N   
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 2e-18
 Identities = 66/306 (21%), Positives = 108/306 (35%), Gaps = 64/306 (20%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           +     N +  +PD I   T+ R L+L  N    +          LE L LS N ++  I
Sbjct: 48  VICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGC 387
                  L+++ +L+L  N L   IP     F  L                         
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT-TIPNGA--FVYLSK----------------------- 137

Query: 388 VSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISN 447
               L+ L L N                        N I     ++  ++ SLR LD+  
Sbjct: 138 ----LKELWLRN------------------------NPIESIPSYAFNRIPSLRRLDLGE 169

Query: 448 NQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL 507
            +    +SE  F  LS+L +   +  +L     PN  P+ +L+ELDL   +L    P   
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 508 HSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLD 565
               HL  L +  S I   I    + ++     ++L++N +   +P+   T +  L  + 
Sbjct: 228 QGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

Query: 566 LSANNL 571
           L  N  
Sbjct: 286 LHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 7e-16
 Identities = 58/271 (21%), Positives = 95/271 (35%), Gaps = 51/271 (18%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKA 479
           +L EN I      S   L  L  L +S N +  T+    F  L++L       N LT   
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIP 128

Query: 480 NPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFN 539
           N  +V + +L+EL LR+  +        +    L  LD+ +   +  I    ++ ++   
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 540 YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHF 599
           YL+L+   +  EIPNLT + +L  LDLS N+LS                           
Sbjct: 189 YLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS--------------------------- 220

Query: 600 VCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR 659
                          +      G          +L  L +  ++       +   L  L 
Sbjct: 221 --------------AIRPGSFQG--------LMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 660 SLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
            ++L +NNL+            LE I +  N
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 19/215 (8%)

Query: 540 YLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLS 593
            L+L  NQI   I       +  L  L LS N++   + + A    +N+  L+L  N+L+
Sbjct: 68  LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT 125

Query: 594 GSILHFVCHET-NGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRL-DNNKFTGKLPTS 651
                 + +         + + L +N +       +     L  L L +  + +     +
Sbjct: 126 -----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711
              LS LR L+L   NL   +P +L    +L+ +D+  N  S  +     +    +  L 
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237

Query: 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
           +  ++   +      +L  L  + LA NNL+  +P
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 40/275 (14%)

Query: 473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFW 532
               L+  P+ +       L+L    +     +      HL  L +S + I  TI    +
Sbjct: 51  VRKNLREVPDGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAF 108

Query: 533 KSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLD 586
             +   N L L +N++   IPN     +S+L  L L  N +   +P  A     ++  LD
Sbjct: 109 NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG 646
           L + K                   ++  + +    G           L  L L       
Sbjct: 167 LGELK-------------------RLSYISEGAFEG--------LSNLRYLNLAMCNLR- 198

Query: 647 KLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPR 706
           ++P  L  L  L  L L  N+LS   P S      L+ + + +++    +     +    
Sbjct: 199 EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQS 256

Query: 707 MIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
           ++ + L  N    +       L  L+ + L  N  
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 46/283 (16%)

Query: 593 SGSILHFVCHETNGTRL-------TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645
           S      +C   N   +       T+++NL +N +     + + + R+L +L+L  N   
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFP 705
                +   L+ L +L L +N L+     +    ++L+ + +  N    ++P++   R P
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP 160

Query: 706 RMIILIL-RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDS 763
            +  L L    +   +       L+ L+ L LA  NL   IP  ++    +    L  + 
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNH 218

Query: 764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIP 823
           +  I+       PG F                         L  L  + +  ++    I 
Sbjct: 219 LSAIR-------PGSFQG-----------------------LMHLQKLWMIQSQIQ-VIE 247

Query: 824 AE-ITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSN 864
                 L+ L  +NL+HN  +  +P ++   +  LE +    N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 43/265 (16%), Positives = 79/265 (29%), Gaps = 51/265 (19%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
           +L L  N+       S   L  L  L L  N++      +      L T+++ +N  +  
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-T 126

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
           +P        ++  L LR+N    +       +  L+ L L        I          
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-------- 178

Query: 756 ATFLGSDSIYT-------IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLL 808
             F G  ++         ++   + +                              L  L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTP-----------------------------LIKL 209

Query: 809 TNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPEN-IGAMALLESLDFSSNRL 866
             +DLS N  S  I       L  L+ L +  +     I  N    +  L  ++ + N L
Sbjct: 210 DELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

Query: 867 EGEIPKNTV-NLVFLSHFNISYNNL 890
              +P +    L  L   ++ +N  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
           P L     L  L+LS N    I+ P     + +L+ L +  +    +  N   NL +L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           +NL  N L  L          L  LE + L  
Sbjct: 260 INLAHNNLTLLPH---DLFTPLHHLERIHLHH 288

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (302), Expect = 7e-29
 Identities = 76/477 (15%), Positives = 141/477 (29%), Gaps = 87/477 (18%)

Query: 110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-----GNLSNLQ 164
               L  L+   +    +     +  +  L  L  +         N I        +NL 
Sbjct: 40  QLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTS--------NNITTLDLSQNTNLT 88

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           YL    N L  L       +  L+ L  L+     L+K+            L  L  A  
Sbjct: 89  YLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLDVSQ-----NPLLTYLNCARN 137

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
            L+    + V++ + L  LD   N     +    +     L  LD S N         + 
Sbjct: 138 TLTE---IDVSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNKITE---LDVS 188

Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
               L  L+  +N+ + L    LN+  +L +L  SSN    +++ + +  L+ +   D S
Sbjct: 189 QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN----KLTEIDVTPLTQLTYFDCS 241

Query: 345 FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG 404
            N L  ++    S    L ++      L    ++             L            
Sbjct: 242 VNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQ---------LIYFQAEGCRKIK 289

Query: 405 SLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSS 464
            L   +     L  +D     I+      L +   L YL ++N +L    +E+  ++ + 
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL----TELDVSHNTK 340

Query: 465 LTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIV 524
           L         +      +   +  L                   ++   + +        
Sbjct: 341 LKSLSCVNAHIQ--DFSSVGKIPALNNNFE--------------AEGQTITMPKE----- 379

Query: 525 DTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN 581
            T+ N         + L    N +    P    V    T  ++  NLS   P +   
Sbjct: 380 -TLTNNSLTIAVSPDLLDQFGNPM-NIEPGDGGVYDQATNTITWENLSTDNPAVTYT 434

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (286), Expect = 9e-27
 Identities = 71/488 (14%), Positives = 148/488 (30%), Gaps = 88/488 (18%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           N      +              L+ L  L+   + +      D+  +  L+ L  L  + 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-----TDMTGIEKLTGLTKLICTS 73

Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
            +++ +       +   +L  L     +L++   L V   + L  L+   N+    L   
Sbjct: 74  NNITTLD-----LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNK----LTKL 121

Query: 258 QLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317
            +     L +L+ + N         + + T L  LD   N     +   +   ++L  L 
Sbjct: 122 DVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLD 176

Query: 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKV 377
            S N    +I+ + +     +  L+   N +  K+    ++   L  +  S  +L+   V
Sbjct: 177 CSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDV 229

Query: 378 SQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL 437
           + +           L   D S   L+      +     L ++   +  +       L   
Sbjct: 230 TPLTQ---------LTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLE---IDLTHN 274

Query: 438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT---LKANPNWVPVFQLEELDL 494
           + L Y      +      E+   + + L         +T   L  NP       L  L L
Sbjct: 275 TQLIYFQAEGCRKI---KELDVTHNTQLYLLDCQAAGITELDLSQNPK------LVYLYL 325

Query: 495 RSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN 554
                         +   L  LD+S                T+   LS  N  I  +  +
Sbjct: 326 --------------NNTELTELDVS--------------HNTKLKSLSCVNAHI-QDFSS 356

Query: 555 LTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKL--SGSILHFVCHETNGTRLTQ 611
           + ++  L     +           L +N + + +S + L   G+ ++    +        
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQAT 416

Query: 612 IINLEDNL 619
                +NL
Sbjct: 417 NTITWENL 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  113 bits (284), Expect = 1e-26
 Identities = 87/490 (17%), Positives = 170/490 (34%), Gaps = 86/490 (17%)

Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
                 A  ++     +S    ++L +LD  ++   +    T +  L  L  L  + NN 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNI 76

Query: 276 QGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
                  +   T+L +L   SN  + L    +   ++L YL+  +N+L    + + +   
Sbjct: 77  TTL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL----TKLDVSQN 126

Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
             +  L+ + N L  +I    S    L  +     +             +      L +L
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT------KLDVTPQTQ--LTTL 175

Query: 396 DLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVS 455
           D S   ++      + + K+LN ++   N+I+      L +   L +LD S+N+L    +
Sbjct: 176 DCSFNKIT---ELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKL----T 225

Query: 456 EIHFANLSSLTFFYASRNSLT---LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNH 512
           EI    L+ LT+F  S N LT   +           L  L                 Q  
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELDVSTLSK------LTTLHC--------------IQTD 265

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
           L+ +D++ +              TQ  Y      +   +  ++T  +QL  LD  A  ++
Sbjct: 266 LLEIDLTHN--------------TQLIYFQAEGCRKI-KELDVTHNTQLYLLDCQAAGIT 310

Query: 573 GQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW 631
            +L L     ++ L L+  +L  + L      ++ T+L   ++  +  +  +        
Sbjct: 311 -ELDLSQNPKLVYLYLNNTEL--TELDV----SHNTKLKS-LSCVNAHIQ-DFSSV-GKI 360

Query: 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSG---TLPVSLGNCTELETIDIG 688
             L        +       +L   SL  ++     +  G    +    G   +  T  I 
Sbjct: 361 PALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

Query: 689 ENEFSGNVPA 698
               S + PA
Sbjct: 421 WENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 58/374 (15%), Positives = 115/374 (30%), Gaps = 52/374 (13%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLN 167
           +     L YLN   N    + +         L +L+ +         N +  +       
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDV----SQNPLLTYLNCAR--------NTLTEIDVSHNTQ 149

Query: 168 LRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLS 227
           L               +   + L  LD S   ++++       +  + L  L      ++
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNIT 204

Query: 228 HFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWT 287
               L +     L  LD S N+     +      L  L + D S N     +  +    +
Sbjct: 205 K---LDLNQNIQLTFLDCSSNKLTEIDVT----PLTQLTYFDCSVNPLT-ELDVS--TLS 254

Query: 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
            L  L         +    L   ++L Y      R    I  + + + + +  LD     
Sbjct: 255 KLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAG 308

Query: 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
           +  ++    S+   L  + L+  +L+   VS             L+SL   N  +    +
Sbjct: 309 IT-ELD--LSQNPKLVYLYLNNTELTELDVSHNTK---------LKSLSCVNAHIQ-DFS 355

Query: 408 NQIGKFKVLNSVDLSENSI-----SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL 462
           + +GK   LN+   +E              SL    S   LD   N +N    +    + 
Sbjct: 356 S-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQ 414

Query: 463 SSLTFFYASRNSLT 476
           ++ T  + + ++  
Sbjct: 415 ATNTITWENLSTDN 428

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 8e-13
 Identities = 81/460 (17%), Positives = 144/460 (31%), Gaps = 114/460 (24%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           L SLD  N++++  +T  I K   L  +  + N+I+      L + ++L YL   +N+L 
Sbjct: 44  LTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKL- 97

Query: 452 GTVSEIHFANLSSLTFFYASRNSLT---LKANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508
              + +    L+ LT+     N LT   +  NP       L  L+     L     S   
Sbjct: 98  ---TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL------LTYLNCARNTLTEIDVSHNT 148

Query: 509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSA 568
               L  LD   +  +  +       +T    L  S N+I     ++++   L  L+   
Sbjct: 149 Q---LTELDCHLNKKITKLDVTPQTQLT---TLDCSFNKITEL--DVSQNKLLNRLNCDT 200

Query: 569 NNLSGQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC 627
           NN++ +L L     +  LD S NKL+   +      T  T+LT   +   N L  E+   
Sbjct: 201 NNIT-KLDLNQNIQLTFLDCSSNKLTEIDV------TPLTQLT-YFDCSVNPLT-ELDVS 251

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
            ++   L  L              L   + L             L V+  + T+L  +D 
Sbjct: 252 TLS--KLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDC 304

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT 747
                +                             L+L     L  L L    L+  +  
Sbjct: 305 QAAGIT----------------------------ELDLSQNPKLVYLYLNNTELT-ELD- 334

Query: 748 CISNFTAMATF-LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLR 806
            +S+ T + +    +  I                                +  +    + 
Sbjct: 335 -VSHNTKLKSLSCVNAHI--------------------------------QDFSSVGKIP 361

Query: 807 LLTNIDLSNNKFSGEIPAEI------TVLRELRSLNLSHN 840
            L N   +  +    +P E       T+      L+   N
Sbjct: 362 ALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 63/419 (15%), Positives = 135/419 (32%), Gaps = 56/419 (13%)

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
            ++  +W P          +  +             L +LD  +S I D         +T
Sbjct: 8   TQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLT 67

Query: 537 QFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVLDLSKNKLSGS 595
               L  ++N I     +L++ + L  L   +N L+  L +   + +  L+   NKL+  
Sbjct: 68  ---KLICTSNNI--TTLDLSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKL 121

Query: 596 ILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL 655
                   +    LT  +N   N L  EI     +   L  L    NK   KL   +   
Sbjct: 122 ------DVSQNPLLTY-LNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQ 169

Query: 656 SLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSN 715
           + L +L    N ++    + +     L  ++   N  +  +      +  ++  L   SN
Sbjct: 170 TQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSN 222

Query: 716 KFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMAT-FLGSDSIYTIQYPSDFS 774
           K      +++  L  L     + N L+  +   +S  + + T       +  I       
Sbjct: 223 KLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEI------- 269

Query: 775 FPGKFFNITEQFVEEELITLEGKTLTFKAVLRL--LTNIDLSNNKFSGEIPAEITVLREL 832
                 ++T             + +    V     L  +D      + E+   ++   +L
Sbjct: 270 ------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKL 320

Query: 833 RSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
             L L++   +  +   +     L+SL   +  ++ +       +  L++   +     
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVG-KIPALNNNFEAEGQTI 374

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 1e-27
 Identities = 102/539 (18%), Positives = 176/539 (32%), Gaps = 86/539 (15%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
                LN+  NY+  L+  D+     LS L  L +S   +  +     V    + L  L 
Sbjct: 21  QKTTILNISQNYISELWTSDIL---SLSKLRILIISHNRIQYLDIS--VFKFNQELEYLD 75

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           L+  +L            +L  LDLS N FD                          PI 
Sbjct: 76  LSHNKLVKISC---HPTVNLKHLDLSFNAFDAL------------------------PIC 108

Query: 281 DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
               N + L+ L LS+ H        +   + L    +     +        E L    +
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNT 400
             L       K              +L    +         + F   ++ +  +  LSN 
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 401 TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFA 460
           TL+   T      ++L  V                  +++ Y  ISN +L G        
Sbjct: 226 TLNNIETTWNSFIRILQLVW----------------HTTVWYFSISNVKLQG-------- 261

Query: 461 NLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISD 520
                  F  S  SL             + ++          +   + S  ++ N  +S 
Sbjct: 262 -QLDFRDFDYSGTSLK---------ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 521 SGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLA 579
           + +   +       I+ F +L  SNN +   +  N   +++L TL L  N L  +L  +A
Sbjct: 312 TRM---VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIA 367

Query: 580 ------SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRY 633
                  ++  LD+S+N +S       C   + T+    +N+  N+L   I  C      
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDC---SWTKSLLSLNMSSNILTDTIFRC--LPPR 422

Query: 634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF 692
           + VL L +NK    +P  +  L  L+ L++ +N L           T L+ I +  N +
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (278), Expect = 1e-25
 Identities = 79/399 (19%), Positives = 155/399 (38%), Gaps = 41/399 (10%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQ-YLNLR 169
             +L +L+LS+N F  + I +  G+M  L+FL LS           I +L+  +  L L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 170 PNYLGGLYVEDLGWLYDLSLLENLDLSG-----VDLSKVSNGPLVTNALRSLLVLQLAGC 224
             Y      E L      SL      +      +D+S  +   L  + ++ +L       
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
            LS    L      S +TL+     +++ +   QL     + +  +S+   QG +     
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 285 NWT-----SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQ 339
           +++     +L    + S+ F +        FS +   + + +  +  +  +    +S   
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFL 327

Query: 340 SLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399
            LD S N L   +  +      L ++ L   QL  +++S++  + +   S  L+ LD+S 
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQL--KELSKIAEMTTQMKS--LQQLDISQ 383

Query: 400 TTLSGSL-----------------TNQIGKF------KVLNSVDLSENSISGQVPWSLGK 436
            ++S                    +N +           +  +DL  N I   +P  + K
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVK 442

Query: 437 LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           L +L+ L++++NQL  +V +  F  L+SL   +   N  
Sbjct: 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (258), Expect = 4e-23
 Identities = 89/489 (18%), Positives = 174/489 (35%), Gaps = 72/489 (14%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-----GNLS 161
            +L    L  L +S+N  + + I  F      L +LDLS         N++         
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSH--------NKLVKISCHPTV 90

Query: 162 NLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLV-TNALRSLLVLQ 220
           NL++L+L  N    L         ++S L+ L LS   L K S  P+   N  + LLVL 
Sbjct: 91  NLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFD-------NSLIATQLYGLCNLVFLDLSDN 273
               +      L   N  SL  +  ++ +F         ++   +L  +  ++  +    
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 274 NFQGPIPDTIQNWT---SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSV 330
                            +L +++ + N F  ++   L   + + Y S+S+ +LQG++   
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNVKLQGQLDFR 266

Query: 331 LLE----NLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
             +    +L ++    +  +   +     +  F N+   + +            +   S 
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR----MVHMLCPSK 322

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS--GQVPWSLGKLSSLRYLD 444
                   LD SN  L+ ++    G    L ++ L  N +    ++     ++ SL+ LD
Sbjct: 323 ISP--FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 445 ISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFP 504
           IS N ++    +   +   SL     S N LT           +++ LDL          
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT--DTIFRCLPPRIKVLDL---------- 428

Query: 505 SWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLG 562
                 N +            +IP +  K       L++++NQ+   +P+     ++ L 
Sbjct: 429 ----HSNKI-----------KSIPKQVVKL-EALQELNVASNQLK-SVPDGIFDRLTSLQ 471

Query: 563 TLDLSANNL 571
            + L  N  
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 84/534 (15%), Positives = 179/534 (33%), Gaps = 81/534 (15%)

Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
                L++S N +             LR + +S  ++ +  +S    +F       LE L
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQE--LEYL 74

Query: 396 DLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLGKLSSLRYLDISNNQLNGTV 454
           DLS+  L   ++        L  +DLS N+  +  +    G +S L++L +S   L    
Sbjct: 75  DLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KS 130

Query: 455 SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLV 514
           S +  A+L+          +   K +P  +  F  E L +              S   + 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 515 NLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQ 574
           NL++S+      I      +   +    L+  Q + ++ NLT    L  ++ + N+    
Sbjct: 191 NLELSN------IKCVLEDNKCSYFLSILAKLQTNPKLSNLT----LNNIETTWNSFIRI 240

Query: 575 LPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRY 633
           L L+  + V    +S  KL G +              +  +     L           + 
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDF------------RDFDYSGTSL-----------KA 277

Query: 634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693
           L + ++ ++ F           S +   +   +       +     +    +D   N  +
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELC--HLAFLKILVLAGNNLSGTIPTCISN 751
            +           +  LIL+ N+   +  +      +  L+ L ++ N++S         
Sbjct: 338 -DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS--------- 387

Query: 752 FTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNI 811
                                +       + T+  +   + +       F+ +   +  +
Sbjct: 388 ---------------------YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

Query: 812 DLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSN 864
           DL +NK    IP ++  L  L+ LN++ N     +P+ I   +  L+ +   +N
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.1 bits (182), Expect = 8e-14
 Identities = 85/505 (16%), Positives = 145/505 (28%), Gaps = 115/505 (22%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
             VD S+N +   VP  L        L+IS N ++  +      +LS L     S N + 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 477 -LKANPNWVPVF----QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF 531
            L  +     VF    +LE LDL              S N LV +               
Sbjct: 59  YLDIS-----VFKFNQELEYLDL--------------SHNKLVKIS-------------- 85

Query: 532 WKSITQFNYLSLSNNQIH-----GEIPNLTEVSQLGTLDLSANNLS----GQLPLLASNV 582
                   +L LS N         E  N++   QL  L LS  +L       +  L  + 
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 583 MVLDLSKNKLSG-SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYL---LVLR 638
           ++L L +               T    +    N E + +         N        VL 
Sbjct: 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 639 LDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPA 698
            +   +   +   L     L +L L N   +    + +       T+             
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV------------- 249

Query: 699 WIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF 758
                        + + K  G         +   +  L+ + +   +             
Sbjct: 250 ---------WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV------------- 287

Query: 759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAV---LRLLTNIDLSN 815
                     +P  + +   F N+  +       T+ G  +        +    ++D SN
Sbjct: 288 --------FGFPQSYIYE-IFSNMNIKNF-----TVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA---MALLESLDFSSNRLEGEIPK 872
           N  +  +      L EL +L L  N     + +       M  L+ LD S N +  +  K
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 873 NT-VNLVFLSHFNISYNNLSGEVPD 896
                   L   N+S N L+  +  
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFR 417

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 113 HLIYLNLSYNDFKGI-QIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQYLNLRP 170
            L  L L  N  K + +I      M +L+ LD+S                 +L  LN+  
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
           N L       L        ++ LDL    +  +    +    L +L  L +A  QL   P
Sbjct: 409 NILTDTIFRCL-----PPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVP 460

Query: 231 PLSVANFSSLVTLDLSHNQFD 251
                  +SL  + L  N +D
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWD 481

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  116 bits (292), Expect = 1e-27
 Identities = 86/432 (19%), Positives = 157/432 (36%), Gaps = 75/432 (17%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
           +++ Y++L  N +  L   +      L  L+ L +       +         L SL++L+
Sbjct: 30  AHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILK 85

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLI-ATQLYGLCNLVFLDLSDNNFQGPI 279
           L   Q       +    ++L  L L+    D +++       L +L  L L DNN +   
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 280 PDTI-QNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338
           P +   N      LDL+ N    +  E L  F    +  L                LSSI
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL---------------RLSSI 190

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
              D++   L W+   +  +  ++ ++ LSG      K S     F       ++SL LS
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF---KESMAKRFFDAIAGTKIQSLILS 247

Query: 399 NTTLSGS------------LTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDIS 446
           N+   GS             T +  +   + + DLS++ I   +       + L  L ++
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 447 NNQLNGTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVF----QLEELDLRSCYLGP 501
            N++N  + +  F  L+ L     S+N L  + +      +F    +LE LDL       
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSR-----MFENLDKLEVLDL------- 354

Query: 502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVS 559
                  S NH+             + ++ +  +     L+L  NQ+   +P+     ++
Sbjct: 355 -------SYNHI-----------RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT 395

Query: 560 QLGTLDLSANNL 571
            L  + L  N  
Sbjct: 396 SLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (277), Expect = 1e-25
 Identities = 72/399 (18%), Positives = 130/399 (32%), Gaps = 65/399 (16%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
           +    + L +L +       +        + +L  L L    F+ +       L+NL+ L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
            L    L G  +    +   L+ LE L L   ++ K+       N +R   VL L   ++
Sbjct: 109 TLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLTFNKV 166

Query: 227 SHFPPLSVANFSS--LVTLDLSHNQFDN-------SLIATQLYGLCNLVFLDLSDNNFQG 277
                  + NF       L LS     +              +   ++  LDLS N F+ 
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 278 PIPDTIQNWTSLRHL-------------DLSSNHFSYLIPEWLNKF--SRLEYLSLSSNR 322
            +     +  +   +                  +F             S ++   LS ++
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 323 LQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA 382
           +   +   +  + + ++ L L+ NE+      +F    +L  ++LS   L          
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR---- 341

Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
           +F       LE LDLS         N I              ++  Q       L +L+ 
Sbjct: 342 MFENLDK--LEVLDLSY--------NHIR-------------ALGDQS---FLGLPNLKE 375

Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANP 481
           L +  NQL  +V +  F  L+SL         + L  NP
Sbjct: 376 LALDTNQLK-SVPDGIFDRLTSLQ-------KIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (276), Expect = 1e-25
 Identities = 64/385 (16%), Positives = 126/385 (32%), Gaps = 64/385 (16%)

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
            + L+   ++     S +    L  L +        +      GL +L+ L L  N F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 278 PIPDTIQNWTSLRHLDLSSNHF-SYLIPE-WLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
                     +L  L L+  +    ++   +    + LE L L  N ++    +    N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 336 SSIQSLDLSFNELEWKIPRSFSRF--CNLRSISLSGIQLSH----QKVSQVLAIFSGCVS 389
                LDL+FN+++         F   +   + LS I L          +         S
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 390 DVLESLDLSNTTLSGSLTNQIGKFKVLNSV-------------DLSENSISGQVPWSLGK 436
             + +LDLS      S+  +         +                  +      ++   
Sbjct: 214 --ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 437 L--SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVF----QL 489
           L  S ++  D+S +++   + +  F++ + L     ++N +  +  N      F     L
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDN-----AFWGLTHL 325

Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
            +L+L              SQN L            +I +R ++++ +   L LS N I 
Sbjct: 326 LKLNL--------------SQNFL-----------GSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 550 GEIPN--LTEVSQLGTLDLSANNLS 572
             + +     +  L  L L  N L 
Sbjct: 361 -ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.4 bits (240), Expect = 4e-21
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 73/442 (16%)

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
             + ++DLS N  + L     ++   L++L +        I +     LSS+  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL 406
           +   ++                               F+G  +  LE L L+        
Sbjct: 90  QFL-QLETG---------------------------AFNGLAN--LEVLTLTQ------- 112

Query: 407 TNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLT 466
                    L+   LS N            L+SL  L + +N +        F N+    
Sbjct: 113 -CN------LDGAVLSGN--------FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157

Query: 467 FFYASRNSLT----------LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNL 516
               + N +              +   + +  +   D+   +LG            +  L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 517 DISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP 576
           D+S +G  +++  RF+ +I      SL  +  +    +          D       G   
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---GHTNFKDPDNFTFKG--- 271

Query: 577 LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLV 636
           L AS V   DLSK+K+  ++L  V          + + L  N +     + +    +LL 
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFS---HFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNV 696
           L L  N            L  L  L L  N++      S      L+ + +  N+   +V
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SV 386

Query: 697 PAWIGERFPRMIILILRSNKFH 718
           P  I +R   +  + L +N + 
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.4 bits (196), Expect = 2e-15
 Identities = 67/352 (19%), Positives = 110/352 (31%), Gaps = 67/352 (19%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LK 478
           DLS NSI+     S  +L  L++L +        +    F  LSSL       N    L+
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95

Query: 479 ANPNWVPVF----QLEELDLRSCYLGPPF--PSWLHSQNHLVNLDISDSGIVDTIPNRFW 532
                   F     LE L L  C L       ++      L  L + D+ I    P  F+
Sbjct: 96  TG-----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 533 KSITQFNYLSLSNNQI----HGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVM----- 583
            ++ +F+ L L+ N++      ++ N         L LS+  L                 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 584 ------VLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVL 637
                  LDLS N    S+             T+I +L  +                   
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIA---GTKIQSLILSNSYNMGSSFGHT----NFK 262

Query: 638 RLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVP 697
             DN  F G   + +      ++  L  + +   L     + T+LE + + +NE +  + 
Sbjct: 263 DPDNFTFKGLEASGV------KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KID 315

Query: 698 AWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCI 749
                                  F      L  L  L L+ N L  +I + +
Sbjct: 316 D--------------------NAF----WGLTHLLKLNLSQNFLG-SIDSRM 342

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 71/356 (19%), Positives = 121/356 (33%), Gaps = 36/356 (10%)

Query: 563 TLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG 622
                   L  Q+P L ++V  +DLS N ++  +            L   + +E      
Sbjct: 14  NAICINRGLH-QVPELPAHVNYVDLSLNSIA-ELNETSFS--RLQDLQ-FLKVEQQTPGL 68

Query: 623 EIP-DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNL-SGTLPV-SLGNC 679
            I  + +     L++L+LD N+F      +   L+ L  L L   NL    L        
Sbjct: 69  VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 680 TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA--FLKILVLA 737
           T LE + + +N      PA       R  +L L  NK   +   +L +       +L L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 738 GNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPS---DFSFPGKFFNITEQFVEEEL--- 791
              L   +      +        + SI T+         S   +FF+       + L   
Sbjct: 189 SITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 792 -ITLEGKTLTFKAVLRL------------LTNIDLSNNKFSGEIPAEI-TVLRELRSLNL 837
                G +                     +   DLS +K    +   + +   +L  L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306

Query: 838 SHNFFSGRIPENI-GAMALLESLDFSSNRLEGEIPKNT-VNLVFLSHFNISYNNLS 891
           + N  + +I +N    +  L  L+ S N L G I      NL  L   ++SYN++ 
Sbjct: 307 AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 22/151 (14%)

Query: 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------GNL 160
           L+   +   +LS +    +          +L  L L+         N+I          L
Sbjct: 272 LEASGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQ--------NEINKIDDNAFWGL 322

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
           ++L  LNL  N+LG +         +L  LE LDLS   +  + +       L +L  L 
Sbjct: 323 THLLKLNLSQNFLGSIDS---RMFENLDKLEVLDLSYNHIRALGDQ--SFLGLPNLKELA 377

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFD 251
           L   QL   P       +SL  + L  N +D
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (291), Expect = 6e-27
 Identities = 74/409 (18%), Positives = 117/409 (28%), Gaps = 110/409 (26%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
             H+  L +  N      +         LR L++SG      +P     L  L   +   
Sbjct: 60  PAHITTLVIPDN-----NLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
            +L  L                                       L  L + G QL+  P
Sbjct: 114 THLPAL------------------------------------PSGLCKLWIFGNQLTSLP 137

Query: 231 PLSVANFSSLVTLDLSHNQFDNSLIATQL-YGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
            L       L  L +S NQ         L      L  L   +N     +P      + L
Sbjct: 138 VL----PPGLQELSVSDNQL------ASLPALPSELCKLWAYNNQLTS-LPMLP---SGL 183

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
           + L +S N  + L P      S L  L   +NRL     + L    S ++ L +S N L 
Sbjct: 184 QELSVSDNQLASL-PTLP---SELYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLT 234

Query: 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ 409
             +P   S    L+ + +SG +L                           T+L    +  
Sbjct: 235 -SLPVLPS---ELKELMVSGNRL---------------------------TSLPMLPSG- 262

Query: 410 IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
                 L S+ +  N ++ ++P SL  LSS   +++  N L    SE     L  +T   
Sbjct: 263 ------LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL----SERTLQALREITSAP 311

Query: 470 ASRNSLTLK-ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLD 517
                +          P          + +L P         +      
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (276), Expect = 5e-25
 Identities = 66/378 (17%), Positives = 115/378 (30%), Gaps = 55/378 (14%)

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
                VL +    L+  P       + + TL +  N    SL A        L  L++S 
Sbjct: 39  NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNL-TSLPAL----PPELRTLEVSG 90

Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
           N     +P        L        H   L          L  L +  N+L     + L 
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL-----TSLP 137

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
                +Q L +S N+L   +P        L  +     QL     + +  + SG     L
Sbjct: 138 VLPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQL-----TSLPMLPSG-----L 183

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
           + L +S+  L+ SL     +   L  +    N ++  +P        L+ L +S N+L  
Sbjct: 184 QELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTS 235

Query: 453 TVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNH 512
                     S L     S N LT  + P       L  L +    L    P  L   + 
Sbjct: 236 LPVLP-----SELKELMVSGNRLT--SLPMLPS--GLLSLSVYRNQLT-RLPESLIHLSS 285

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
              +++  + +      +  + IT     S    +      +    ++   L  +A+ L 
Sbjct: 286 ETTVNLEGNPL-SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL-AAADWLV 343

Query: 573 GQLPLLASNVMVLDLSKN 590
                  +      +   
Sbjct: 344 PAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 6e-24
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 52/319 (16%)

Query: 378 SQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL 437
           + V+     C+++    L++  + L+ +L + +     + ++ + +N+++  +P    +L
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPEL 83

Query: 438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSC 497
              R L++S NQL  ++       L  L+ F      L   A P+      L +L +   
Sbjct: 84  ---RTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHLP--ALPS-----GLCKLWIFGN 131

Query: 498 YLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTE 557
            L    P        L  L +SD+ +  ++P       ++   L   NNQ+   +P    
Sbjct: 132 QLTS-LPVLP---PGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLT-SLPM--L 179

Query: 558 VSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLS---GSILHFVCHETNGTRLTQIIN 614
            S L  L +S N L+  LP L S +  L    N+L+                + L ++  
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALP----------SGLKEL-I 227

Query: 615 LEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPV 674
           +  N L   +P        L  L +  N+ T  LP     L    SL +  N L+  LP 
Sbjct: 228 VSGNRL-TSLPVLPSE---LKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPE 278

Query: 675 SLGNCTELETIDIGENEFS 693
           SL + +   T+++  N  S
Sbjct: 279 SLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (264), Expect = 1e-23
 Identities = 75/448 (16%), Positives = 134/448 (29%), Gaps = 104/448 (23%)

Query: 203 VSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN--SLIATQLY 260
               P   +  R+ +V ++  C  +               L++  +        +     
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNN-----------GNAVLNVGESGLTTLPDCLPA--- 61

Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
              ++  L + DNN    +P        LR L++S N  + L P        L   S   
Sbjct: 62  ---HITTLVIPDNNLTS-LPALPPE---LRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL 113

Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV 380
             L            S +  L +  N+L   +P        L+ +S+S  QL+       
Sbjct: 114 THLP--------ALPSGLCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQLAS------ 155

Query: 381 LAIFSGCVSDVLESLDLSN---TTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL 437
                   S+ L  L   N   T+L    +        L  + +S+N ++  +P      
Sbjct: 156 ---LPALPSE-LCKLWAYNNQLTSLPMLPSG-------LQELSVSDNQLA-SLPTLPS-- 201

Query: 438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVFQLEELDLRS 496
             L  L   NN+L    +       S L     S N LT L   P+     +L+EL +  
Sbjct: 202 -ELYKLWAYNNRLTSLPALP-----SGLKELIVSGNRLTSLPVLPS-----ELKELMVSG 250

Query: 497 CYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NL 555
             L                          ++P       +    LS+  NQ+   +P +L
Sbjct: 251 NRL-------------------------TSLPM----LPSGLLSLSVYRNQLT-RLPESL 280

Query: 556 TEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINL 615
             +S   T++L  N LS +       +         +                    +  
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI--IRFDMAGASAPRETRALHLAA 338

Query: 616 EDNLLAGEIPDCWMNWRYLLVLRLDNNK 643
            D L+     +     R+ +  + DN  
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNAD 366

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (252), Expect = 4e-22
 Identities = 68/331 (20%), Positives = 118/331 (35%), Gaps = 59/331 (17%)

Query: 361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVD 420
               +++    L+             C+   + +L + +  L+ SL     + + L   +
Sbjct: 41  GNAVLNVGESGLTT---------LPDCLPAHITTLVIPDNNLT-SLPALPPELRTL---E 87

Query: 421 LSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKAN 480
           +S N ++  +P     L  L         L         A  S L   +   N LT  + 
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLT--SL 136

Query: 481 PNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNY 540
           P   P   L+EL +    L    P+       L  L   ++ +  ++P       +    
Sbjct: 137 PVLPP--GLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLP----MLPSGLQE 185

Query: 541 LSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSG---SIL 597
           LS+S+NQ+   +P     S+L  L    N L+  LP L S +  L +S N+L+       
Sbjct: 186 LSVSDNQLA-SLPT--LPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLP- 240

Query: 598 HFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSL 657
                    + L ++  +  N L   +P        LL L +  N+ T +LP SL  LS 
Sbjct: 241 ---------SELKEL-MVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSS 285

Query: 658 LRSLHLRNNNLSGTLPVSLGNCTELETIDIG 688
             +++L  N LS    +             G
Sbjct: 286 ETTVNLEGNPLS-ERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 78/443 (17%), Positives = 140/443 (31%), Gaps = 108/443 (24%)

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
                L++  +  + L P+ L   + +  L +  N L     + L      +++L++S N
Sbjct: 40  NGNAVLNVGESGLTTL-PDCL--PAHITTLVIPDNNL-----TSLPALPPELRTLEVSGN 91

Query: 347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL 406
           +L   +P        L   S     L         A+ SG     L  L +    L+ SL
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSG-----LCKLWIFGNQLT-SL 136

Query: 407 TNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLT 466
                  + L    +S+N ++  +P        L  L   NNQL  ++        S L 
Sbjct: 137 PVLPPGLQEL---SVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPM----LPSGLQ 184

Query: 467 FFYASRNSLT-LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVD 525
               S N L  L   P+     +L +L                  N L +L         
Sbjct: 185 ELSVSDNQLASLPTLPS-----ELYKLWA--------------YNNRLTSLP-------- 217

Query: 526 TIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVL 585
                     +    L +S N++   +P     S+L  L +S N L+  LP+L S ++ L
Sbjct: 218 -------ALPSGLKELIVSGNRL-TSLPV--LPSELKELMVSGNRLT-SLPMLPSGLLSL 266

Query: 586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645
            + +N+L+                              +P+  ++      + L+ N  +
Sbjct: 267 SVYRNQLT-----------------------------RLPESLIHLSSETTVNLEGNPLS 297

Query: 646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFP 705
            +          + S    +  +            E   + +   ++   VPA  GE  P
Sbjct: 298 -ERTLQAL--REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEPAP 352

Query: 706 RMIILILRSNKFHGVFPLELCHL 728
                +         F L L  L
Sbjct: 353 ADRWHMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 4e-18
 Identities = 61/334 (18%), Positives = 119/334 (35%), Gaps = 77/334 (23%)

Query: 559 SQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLED 617
           +    L++  + L+  LP  L +++  L +  N L+ S+            L  +  +  
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT-SL------PALPPELRTL-EVSG 90

Query: 618 NLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLG 677
           N L   +P        L +           LP+ L        L +  N L+ +LPV   
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGL------CKLWIFGNQLT-SLPVLPP 141

Query: 678 NCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLA 737
              EL    + +N+ + ++PA        +  L   +N+   + P+    L   + L ++
Sbjct: 142 GLQEL---SVSDNQLA-SLPALPS----ELCKLWAYNNQLTSL-PMLPSGL---QELSVS 189

Query: 738 GNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK 797
            N L+ ++PT  S                                       +L     +
Sbjct: 190 DNQLA-SLPTLPSELY------------------------------------KLWAYNNR 212

Query: 798 TLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLE 857
             +  A+   L  + +S N+ +  +P   +   EL+ L +S N  +  +P        L 
Sbjct: 213 LTSLPALPSGLKELIVSGNRLT-SLPVLPS---ELKELMVSGNRLT-SLPMLPSG---LL 264

Query: 858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
           SL    N+L   +P++ ++L   +  N+  N LS
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 63/359 (17%), Positives = 126/359 (35%), Gaps = 84/359 (23%)

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
           N    L++ +SG+  T+P+     IT    L + +N +   +P      +L TL++S N 
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLPAHITT---LVIPDNNLT-SLPA--LPPELRTLEVSGNQ 92

Query: 571 LSGQLPLLASNVM---VLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC 627
           L+  LP+L   ++   +       L           +   +L     +  N L   +P  
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKL----WIFGNQLT-SLPVL 139

Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
               + L    + +N+    LP     L     L   NN L+ +LP+       L+ + +
Sbjct: 140 PPGLQEL---SVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLPMLPSG---LQELSV 188

Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT 747
            +N+ + ++P         +  L   +N+     P     L   K L+++GN L+ ++P 
Sbjct: 189 SDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLT-SLPV 238

Query: 748 CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRL 807
             S                                       EL+    +  +   +   
Sbjct: 239 LPSELK------------------------------------ELMVSGNRLTSLPMLPSG 262

Query: 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL 866
           L ++ +  N+ +  +P  +  L    ++NL  N  S R  + +     + S    S  +
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE---ITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 3e-17
 Identities = 58/306 (18%), Positives = 93/306 (30%), Gaps = 40/306 (13%)

Query: 112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLR-- 169
             L  L +  N     Q+         L+ L +S       +P     L  L   N +  
Sbjct: 121 SGLCKLWIFGN-----QLTSLPVLPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLT 174

Query: 170 --PNYLGGLYVEDLGW--LYDL----SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQL 221
             P    GL    +    L  L    S L  L      L+ +   P        L  L +
Sbjct: 175 SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP------SGLKELIV 228

Query: 222 AGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL-YGLCNLVFLDLSDNNFQGPIP 280
           +G +L+  P L     S L  L +S N+       T L      L+ L +  N     +P
Sbjct: 229 SGNRLTSLPVL----PSELKELMVSGNRL------TSLPMLPSGLLSLSVYRNQLTR-LP 277

Query: 281 DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
           +++ + +S   ++L  N  S    + L + +     S    R     +S   E  +   +
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSI------SLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
                       P    R+            SL   +LS  +     A F   +S  L  
Sbjct: 338 AADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQ 397

Query: 395 LDLSNT 400
           L     
Sbjct: 398 LAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 63/395 (15%), Positives = 119/395 (30%), Gaps = 102/395 (25%)

Query: 446 SNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPS 505
            +      V ++     +         + LT    P+ +P   +  L +    L    P+
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLT--TLPDCLPA-HITTLVIPDNNL-TSLPA 78

Query: 506 WLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLD 565
                  L  L++S + +  ++P      + + +  S     +      L +      L 
Sbjct: 79  LP---PELRTLEVSGNQLT-SLPVLP-PGLLELSIFSNPLTHLPALPSGLCK------LW 127

Query: 566 LSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP 625
           +  N L+  LP+L   +  L +S N+L+ S+                +   +N L   +P
Sbjct: 128 IFGNQLT-SLPVLPPGLQELSVSDNQLA-SLPALPSELCK-------LWAYNNQLT-SLP 177

Query: 626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685
                   L  L + +N+    LPT    L     L   NN L+ +LP       EL   
Sbjct: 178 MLPSG---LQELSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSGLKEL--- 226

Query: 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI 745
            +  N  + ++P    E    +  L++  N+   + P+    L     L +  N L+  +
Sbjct: 227 IVSGNRLT-SLPVLPSE----LKELMVSGNRLTSL-PMLPSGL---LSLSVYRNQLT-RL 276

Query: 746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
           P  + +                                                     L
Sbjct: 277 PESLIH-----------------------------------------------------L 283

Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN 840
              T ++L  N  S E   +    RE+ S      
Sbjct: 284 SSETTVNLEGNPLS-ERTLQAL--REITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 1e-12
 Identities = 52/297 (17%), Positives = 85/297 (28%), Gaps = 94/297 (31%)

Query: 601 CHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRS 660
           C       L    N+ ++ L   +PDC      +  L + +N  T  LP     L   R+
Sbjct: 37  CLNNGNAVL----NVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPEL---RT 85

Query: 661 LHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV 720
           L +  N L+ +LPV      EL                           L +  N+    
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC--------KLWIFGNQLT-S 135

Query: 721 FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF 780
            P+    L   + L ++ N L+                               S P    
Sbjct: 136 LPVLPPGL---QELSVSDNQLA-------------------------------SLPALPS 161

Query: 781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN 840
                                      L  +   NN+ +  +P   +    L+ L++S N
Sbjct: 162 E--------------------------LCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 841 FFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
             +  +P        L  L   +NRL   +P     L  L    +S N L+  +P  
Sbjct: 192 QLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVL 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  109 bits (275), Expect = 1e-26
 Identities = 55/210 (26%), Positives = 74/210 (35%), Gaps = 8/210 (3%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
             + + L G     +         NL  L L  N L  +   D      L+LLE LDLS 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI---DAAAFTGLALLEQLDLSD 89

Query: 198 -VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIA 256
              L  V       + L  L  L L  C L    P      ++L  L L  N    +L  
Sbjct: 90  NAQLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPD 146

Query: 257 TQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316
                L NL  L L  N          +   SL  L L  N  +++ P       RL  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 317 SLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
            L +N L   + +  L  L ++Q L L+ N
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (252), Expect = 2e-23
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 33/243 (13%)

Query: 210 TNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLD 269
                +   + L G ++SH P  S     +L  L L  N     + A    GL  L  LD
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLD 86

Query: 270 LSDNNFQGPIP-DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRIS 328
           LSDN     +   T      L  L L       L P      + L+YL L  N LQ  + 
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 329 SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCV 388
                +L ++  L L  N +     R+F    +L  + L   +++H              
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-------------- 191

Query: 389 SDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNN 448
                   +        L         L ++ L  N++S     +L  L +L+YL +++N
Sbjct: 192 --------VHPHAFRD-LGR-------LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 449 QLN 451
              
Sbjct: 236 PWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 42/222 (18%), Positives = 73/222 (32%), Gaps = 25/222 (11%)

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR 322
                + L  N        + +   +L  L L SN  + +        + LE L LS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 323 LQGRISSVLLENLSSIQSLDLSFNELEWKIP-RSFSRFCNLRSISLSGIQLSHQKVSQVL 381
               +       L  + +L L    L+ ++    F     L+ + L    L    +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA--LPD-- 146

Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQI-----GKFKVLNS---VDLSENSISGQVPWS 433
             F    +  L  L L          N+I       F+ L+S   + L +N ++   P +
Sbjct: 147 DTFRDLGN--LTHLFLHG--------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
              L  L  L +  N L+  +     A L +L +   + N  
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 49/215 (22%), Positives = 73/215 (33%), Gaps = 15/215 (6%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQY 165
           +     +L  L L  N    I        +  L  LDLS    +  +       L  L  
Sbjct: 51  SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
           L+L    L  L     G    L+ L+ L L    L  + +       L +L  L L G +
Sbjct: 110 LHLDRCGLQEL---GPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNR 164

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           +S  P  +     SL  L L  N+    +       L  L+ L L  NN      + +  
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 286 WTSLRHLDLSSNHFS------YLIPEWLNKFSRLE 314
             +L++L L+ N +        L   WL KF    
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSS 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 48/281 (17%), Positives = 93/281 (33%), Gaps = 66/281 (23%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
            +    +  +   VP  +   ++ + + +  N+++  V    F    +LT  +   N L 
Sbjct: 14  VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA 69

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
                      +++              +       L  LD+SD+  + ++    +  + 
Sbjct: 70  -----------RID-------------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 537 QFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKN 590
           + + L L    +  E+       ++ L  L L  N L   LP        N+  L L  N
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163

Query: 591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPT 650
           ++S                    ++ +    G           L  L L  N+     P 
Sbjct: 164 RIS--------------------SVPERAFRG--------LHSLDRLLLHQNRVAHVHPH 195

Query: 651 SLGALSLLRSLHLRNNNLSGTLPVS-LGNCTELETIDIGEN 690
           +   L  L +L+L  NNLS  LP   L     L+ + + +N
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 59/258 (22%)

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
           +Q I L  N ++      +   R L +L L +N        +   L+LL  L L +N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 670 GTLPVS-LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHL 728
            ++  +       L T+ +        +   +      +  L L+ N    +       L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 729 AFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVE 788
             L  L L GN +S ++P                         + +F G           
Sbjct: 153 GNLTHLFLHGNRIS-SVP-------------------------ERAFRG----------- 175

Query: 789 EELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIP 847
                           L  L  + L  N+ +  +       L  L +L L  N  S  +P
Sbjct: 176 ----------------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 848 ENI-GAMALLESLDFSSN 864
                 +  L+ L  + N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 39/214 (18%)

Query: 540 YLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLS 593
            + L  N+I   +P         L  L L +N L+ ++   A    + +  LDLS N   
Sbjct: 36  RIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN--- 90

Query: 594 GSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLG 653
                            Q+ +++        P  +     L  L LD        P    
Sbjct: 91  ----------------AQLRSVD--------PATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 654 ALSLLRSLHLRNNNLSGTLPV-SLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILIL 712
            L+ L+ L+L++N L   LP  +  +   L  + +  N  S +VP         +  L+L
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLL 184

Query: 713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
             N+   V P     L  L  L L  NNLS  +P
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 217

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 49/266 (18%), Positives = 73/266 (27%), Gaps = 84/266 (31%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
            + L  N+ +     S  A   L  L L +N L+     +      LE +D+ +N    +
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
           V                        F      L  L  L L    L   +          
Sbjct: 96  VDP--------------------ATFH----GLGRLHTLHLDRCGLQ-ELG--------- 121

Query: 756 ATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815
                               PG F                         L  L  + L +
Sbjct: 122 --------------------PGLFRG-----------------------LAALQYLYLQD 138

Query: 816 NKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSNRLEGEIPKN 873
           N     +P +    L  L  L L  N  S  +PE     +  L+ L    NR+   +  +
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 874 T-VNLVFLSHFNISYNNLSGEVPDEA 898
              +L  L    +  NNLS  +P EA
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEA 220

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  112 bits (282), Expect = 6e-26
 Identities = 100/510 (19%), Positives = 177/510 (34%), Gaps = 61/510 (11%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
            + L LS   +S++       + L  L VL+L+  ++             L  LD+SHN+
Sbjct: 54  TKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQG-PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLN 308
               L       + +L  LDLS N+F   P+     N T L  L LS+  F  L    + 
Sbjct: 112 ----LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 309 KFS-RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISL 367
                   L L S  ++G  +  L    +++  L    N L             L  + L
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ--VNMSVNALGHLQL 225

Query: 368 SGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
           S I+L+ +   +++       S++     L N TL    T      K+            
Sbjct: 226 SNIKLNDENCQRLMTFL----SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-------- 273

Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF 487
                       + YL+I N  +   +    F    +                       
Sbjct: 274 --------WPRPVEYLNIYNLTITERIDREEFTYSETAL------------------KSL 307

Query: 488 QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQ 547
            +E +  +           + ++ ++  L ISD+     I      S + F +L+ + N 
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF---IHMVCPPSPSSFTFLNFTQNV 364

Query: 548 IHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLA---SNVMVLDLSKNKLSGSILHFVCHE 603
               +    + + +L TL L  N L      +A    N+  L+     L+    H     
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHL 663
                   ++NL  N+L G +  C      + VL L NN+    +P  +  L  L+ L++
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480

Query: 664 RNNNLSGTLPV-SLGNCTELETIDIGENEF 692
            +N L  ++P       T L+ I + +N +
Sbjct: 481 ASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (257), Expect = 8e-23
 Identities = 79/403 (19%), Positives = 151/403 (37%), Gaps = 55/403 (13%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--GNLSNLQYLNL 168
              L +L+LS+NDF  + + +  G++  L FL LS          +    +L  + +L+L
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA--------AKFRQLDLLPVAHLHL 171

Query: 169 RPNYLG--GLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
               L     +++  G    L +     L  V          V  ++ +L  LQL+  +L
Sbjct: 172 SCILLDLVSYHIKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCN---------LVFLDLSDNNFQG 277
           +      +  F S +T   +        I T                + +L++ +     
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 278 PIPDTIQNWT-----SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
            I      ++     SL    + +  F +      + F+ +    LS +     I  V  
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCP 349

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH-QKVSQVLA--------- 382
            + SS   L+ + N     + +  S    L+++ L    L +  KV+ +           
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 383 ---------IFSGCVSDV--LESLDLSNTTLSGSLTNQI-GKFKVLNSVDLSENSISGQV 430
                     +    +    +  L+LS+  L+GS+   +  K KVL   DL  N I   +
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLHNNRIM-SI 465

Query: 431 PWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRN 473
           P  +  L +L+ L++++NQL  +V +  F  L+SL + +   N
Sbjct: 466 PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.9 bits (241), Expect = 7e-21
 Identities = 85/469 (18%), Positives = 162/469 (34%), Gaps = 47/469 (10%)

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG--------------------R 326
              + L LS N  S L    ++  S L  L LS NR++                     R
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 327 ISSVLLENLSSIQSLDLSFNELEWKIPRS--FSRFCNLRSISLSGIQLSHQKVSQVLAIF 384
           + ++    ++S++ LDLSFN+ +  +P    F     L  + LS  +     +  V  + 
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 385 SGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLD 444
             C+   L S  +         + QI    VL+ V    +  S QV  S+  L  L+  +
Sbjct: 171 LSCILLDLVSYHIKGGET---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 445 ISNNQLNGTVSEIHFA------NLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCY 498
           I  N  N        +       L ++T  +             +     +E L++ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 499 LG--PPFPSWLHSQNHLVNLDISDSGIVD--TIPNRFWKSITQFNYLSLSNNQIHG-EIP 553
           +        + +S+  L +L I               +    + N   LS +      + 
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 554 NLTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRL 609
                S    L+ + N  +             +  L L +N L  +         N + L
Sbjct: 348 CPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
             +    ++L +            +LVL L +N  TG +   L     ++ L L NN + 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463

Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH 718
            ++P  + +   L+ +++  N+   +VP  + +R   +  + L  N + 
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 86/472 (18%), Positives = 162/472 (34%), Gaps = 61/472 (12%)

Query: 116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------GNLSNLQYLN 167
            L+LS N    ++    +  +  LR L LS         N+I            +L+YL+
Sbjct: 56  ALSLSQNSISELR-MPDISFLSELRVLRLSH--------NRIRSLDFHVFLFNQDLEYLD 106

Query: 168 LRPNYLGGLYVEDLGWLYDLSL-------------------LENLDLSGVDLSKVSNGPL 208
           +  N L  +    +  L  L L                   L  L LS     ++   P+
Sbjct: 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 209 VTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT-LDLSHNQFDNSLIATQLYGLCNLVF 267
               L  +L L L    +      S+   ++ V  L    N   +  +   +  L +L  
Sbjct: 167 AHLHLSCIL-LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 268 LDLSDNNFQGPIPDTIQNWT----SLRHLDLSSNHFSYLIPEWLNKF---SRLEYLSLSS 320
            ++  N+       T  +      +L ++ L     ++     L +F     +EYL++ +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 321 NRLQGRISSVLLEN----LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQK 376
             +  RI           L S+    +      +     +S F  +    LS        
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT---- 341

Query: 377 VSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS--GQVPWSL 434
              +  +     S     L+ +    + S+       K L ++ L  N +    +V    
Sbjct: 342 -PFIHMVCPPSPSS-FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399

Query: 435 GKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
             +SSL  LD+S N LN    +   A   S+     S N LT        P  +++ LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDL 457

Query: 495 RSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNN 546
            +  +    P  +     L  L+++ + +  ++P+  +  +T   Y+ L +N
Sbjct: 458 HNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 84/539 (15%), Positives = 166/539 (30%), Gaps = 109/539 (20%)

Query: 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKV 377
            S+  L    + V  +     ++L LS N +        S    LR + LS  ++     
Sbjct: 38  YSNRNL----THVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93

Query: 378 SQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL 437
                +F       LE LD+S+        N++                      S   +
Sbjct: 94  H----VFLFNQD--LEYLDVSH--------NRLQNI-------------------SCCPM 120

Query: 438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSC 497
           +SLR+LD+S N  +       F NL+ LTF   S                +  +L     
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA--------------KFRQL----- 161

Query: 498 YLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNL-- 555
                     H     + LD+    I            T   +L    N +     N+  
Sbjct: 162 ----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 556 --TEVSQLGTLDLSANNLSGQLPLLA-----SNVMVLDLSKNKLSGSILHFVCHETNGTR 608
                 QL  + L+  N    +  L+       ++ + L   + +      +        
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 609 LTQIINLEDNLLAGEIPDCWMNW-----RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHL 663
           +  + N+ +  +   I      +     + L++  + N  F           + +    L
Sbjct: 278 VEYL-NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 664 RNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL 723
             ++      V   + +    ++  +N F+ +          R+  LIL+ N     F +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 724 --ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFN 781
                +++ L+ L ++ N+L+         +      L   S                  
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN----------------M 439

Query: 782 ITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN 840
           +T                 F+ +   +  +DL NN+    IP ++T L+ L+ LN++ N
Sbjct: 440 LTG--------------SVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 67/368 (18%), Positives = 113/368 (30%), Gaps = 49/368 (13%)

Query: 540 YLSLSNNQI----HGEIPNLTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNK 591
            LSLS N I      +I  L+   +L  L LS N +   L         ++  LD+S N+
Sbjct: 56  ALSLSQNSISELRMPDISFLS---ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 592 LSG-SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM--NWRYLLVLRLDNNKFTGKL 648
           L   S             L  + +L  N     +P C    N   L  L L   KF    
Sbjct: 112 LQNISCCPM-------ASLRHL-DLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 649 PTSLGALSL-LRSLHLRNNNLSGTLPVSL--GNCTELETIDIGENEFSGNVPAWIGER-F 704
              +  L L    L L + ++ G    SL   N T L  +    + FS  V   +     
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 705 PRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM-ATFLGSDS 763
            ++  + L       +            +L +   ++  T    +  F       +   +
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIP 823
           IY      + +   +       + E  L +L  +               + N  F     
Sbjct: 283 IY------NLTITERIDREEFTYSETALKSLMIE--------------HVKNQVFLFSKE 322

Query: 824 AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHF 883
           A  +V  E+    LS +           + +    L+F+ N     + +    L  L   
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 884 NISYNNLS 891
            +  N L 
Sbjct: 383 ILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 10/141 (7%)

Query: 113 HLIYLNLSYNDFKGI-QIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQYLNLRP 170
            L  L L  N  K   ++     +M +L  LD+S         ++      ++  LNL  
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
           N L G     L        ++ LDL    +  +         L++L  L +A  QL   P
Sbjct: 438 NMLTGSVFRCL-----PPKVKVLDLHNNRIMSIPKD---VTHLQALQELNVASNQLKSVP 489

Query: 231 PLSVANFSSLVTLDLSHNQFD 251
                  +SL  + L  N +D
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 41/297 (13%), Positives = 85/297 (28%), Gaps = 34/297 (11%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSL-GNCTELETIDIGENEFSG 694
            L L  N  +      +  LS LR L L +N +  +L   +     +LE +D+  N    
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ- 113

Query: 695 NVPAWIGERFPRMIILILRSNKF-----HGVFPLELCHLAFLKILVLAGNNLSGTIPTCI 749
           N+          +  L L  N F        F     +L  L  L L+           +
Sbjct: 114 NISC---CPMASLRHLDLSFNDFDVLPVCKEFG----NLTKLTFLGLSAAKFRQLDLLPV 166

Query: 750 SNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLT 809
           ++       L   S +     ++         +   F    L +++            L+
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 810 NIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGE 869
           NI L++      +     + R    LN++                    ++ +       
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQ-----------------HIETTWKCSVKL 269

Query: 870 IPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVV 926
                     + + NI    ++  +  E    +  +   +  E++   V       +
Sbjct: 270 F--QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  107 bits (270), Expect = 2e-25
 Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 30/289 (10%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
           +++LDLS   ++ +SN  L      +L  L L    ++     S ++  SL  LDLS+N 
Sbjct: 54  VKSLDLSNNRITYISNSDL--QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHLDLSSNH-FSYLIPEWL 307
             ++L ++    L +L FL+L  N ++     ++  + T L+ L + +   F+ +  +  
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 308 NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISL 367
              + LE L + ++ LQ       L+++ ++  L L   +    +        ++  + L
Sbjct: 171 AGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 368 SGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
               L     S+                      LS   TN + K     +V +++ S+ 
Sbjct: 230 RDTDLDTFHFSE----------------------LSTGETNSLIKKFTFRNVKITDESLF 267

Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
            QV   L ++S L  L+ S NQL  +V +  F  L+SL   +   N   
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 4e-20
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 14/244 (5%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
            ++ LDLS      +  + +    NLQ L L  N +  +   +      L  LE+LDLS 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI---EEDSFSSLGSLEHLDLSY 109

Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIA 256
             LS +S+       L SL  L L G         S+ ++ + L  L + +      +  
Sbjct: 110 NYLSNLSSS--WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 257 TQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316
               GL  L  L++  ++ Q   P ++++  ++ HL L       L+  +++  S +E L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 317 SLSSNRLQG-------RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
            L    L            +  L    + +++ ++   L  ++ +  ++   L  +  S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 370 IQLS 373
            QL 
Sbjct: 287 NQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 56/288 (19%), Positives = 107/288 (37%), Gaps = 29/288 (10%)

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
            +++ LDLS+N  +Y+    L +   L+ L L+SN +   I      +L S++ LDLS+N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL 406
            L       F    +L  ++L G            ++FS      L+ L + N      +
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKT---LGETSLFSHLTK--LQILRVGNMDTFTKI 165

Query: 407 TNQI-GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL 465
             +       L  +++  + +    P SL  + ++ +L +   Q    + EI     SS+
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 466 TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVD 525
                    L      +     +L   +  S          L  +    N+ I+D  +  
Sbjct: 225 ECLELRDTDL------DTFHFSELSTGETNS----------LIKKFTFRNVKITDESLF- 267

Query: 526 TIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNL 571
            +     + I+    L  S NQ+   +P+     ++ L  + L  N  
Sbjct: 268 QVMKLLNQ-ISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 6e-18
 Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 54/252 (21%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------GNLSNLQ 164
           +L  L L+ N    I+      S+G+L  LDLS         N +          LS+L 
Sbjct: 77  NLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSY--------NYLSNLSSSWFKPLSSLT 127

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVD-LSKVSNGPLVTNALRSLLVLQLAG 223
           +LNL  N      + +      L+ L+ L +  +D  +K+         L  L  L++  
Sbjct: 128 FLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDA 183

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQF--------------------DNSLIATQLYGLC 263
             L  + P S+ +  ++  L L   Q                     D  L       L 
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 264 NLVF-----------LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSR 312
                          + ++D +    +   +   + L  L+ S N    +     ++ + 
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302

Query: 313 LEYLSLSSNRLQ 324
           L+ + L +N   
Sbjct: 303 LQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 67/379 (17%), Positives = 118/379 (31%), Gaps = 89/379 (23%)

Query: 377 VSQVLAIFSGCVSDVLESLDLSNTTL----SGSLTN-QIGKFKVLNSVDLSENSISGQVP 431
           V  V+   S   S    SL      +    SGSL +   G  + + S+DLS N I+    
Sbjct: 10  VLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN 69

Query: 432 WSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNW-VPVFQLE 490
             L +  +L+ L +++N +N T+ E  F++L SL     S N L+   + +W  P+  L 
Sbjct: 70  SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT 127

Query: 491 ELDLRSCYLG--PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
            L+L            S       L  L + +      I  + +  +T    L +  + +
Sbjct: 128 FLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 549 HGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCH 602
                   L  +  +  L L        L  +     S+V  L+L    L          
Sbjct: 187 Q-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF------- 237

Query: 603 ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH 662
                  +++   E N L        +       +++ +     ++   L  +S L  L 
Sbjct: 238 -----HFSELSTGETNSL--------IKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP 722
              N L  ++P                                             G+F 
Sbjct: 284 FSRNQLK-SVP--------------------------------------------DGIFD 298

Query: 723 LELCHLAFLKILVLAGNNL 741
                L  L+ + L  N  
Sbjct: 299 ----RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 22/248 (8%)

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANN 570
           + +LD+S++ I   I N   +       L L++N I+  I     + +  L  LDLS N 
Sbjct: 54  VKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 571 LSGQLPLLA----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD 626
           LS  L        S++  L+L  N    ++        +     QI+ + +     +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLF--SHLTKLQILRVGNMDTFTKIQR 167

Query: 627 -CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685
             +    +L  L +D +      P SL ++  +  L L        L + +   + +E +
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 686 DIGENEFSGN----VPAWIGERFPRMIIL---ILRSNKFHGVFPLELCHLAFLKILVLAG 738
           ++ + +        +         +        +       V  L L  ++ L  L  + 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSR 286

Query: 739 NNLSGTIP 746
           N L  ++P
Sbjct: 287 NQLK-SVP 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 51/296 (17%)

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
            + ++L +N +             L  L L +N        S  +L  L  L L  N LS
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKF-----HGVFPLE 724
                     + L  +++  N +       +     ++ IL + +           F   
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-- 171

Query: 725 LCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF-LGSDSIYTIQYPSDFSFPGKFFNIT 783
              L FL+ L +  ++L    P  + +   ++   L       +           F +  
Sbjct: 172 --GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--------LEIFVD-- 219

Query: 784 EQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITV--------LRELRSL 835
                               V   +  ++L +        +E++             R++
Sbjct: 220 --------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 836 NLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV-NLVFLSHFNISYNNL 890
            ++      ++ + +  ++ L  L+FS N+L+  +P      L  L    +  N  
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.9 bits (243), Expect = 4e-21
 Identities = 54/305 (17%), Positives = 107/305 (35%), Gaps = 34/305 (11%)

Query: 184 LYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTL 243
               +     +L    ++         N L S+  +      +     +      ++  L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 70

Query: 244 DLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD--TIQNWTSLRHLDLSSNHFSY 301
            L+ N+  +      L  L NL +L L +N     I D  ++++   L+ L L  N  S 
Sbjct: 71  FLNGNKLTD---IKPLTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGISD 123

Query: 302 LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCN 361
           +    L    +LE L L +N++   I+   L  L+ + +L L  N++   I    +    
Sbjct: 124 I--NGLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTK 176

Query: 362 LRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDL 421
           L+++ LS   +S       L   +G  +  L+ L+L +        N      V N+V  
Sbjct: 177 LQNLYLSKNHISD------LRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 422 SENSISGQVPWS----LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477
           ++ S+      S      K +   +L    N+++    +      +   F       L  
Sbjct: 229 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 288

Query: 478 KANPN 482
               +
Sbjct: 289 VYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.1 bits (241), Expect = 7e-21
 Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 27/246 (10%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL- 166
              F   I  NL                + ++  +  +         + I ++  +QYL 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANN--------SDIKSVQGIQYLP 65

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           N+   +L G  + D+  L +L  L  L L    +  +S   L    L+ L  L L    +
Sbjct: 66  NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SL--KDLKKLKSLSLEHNGI 121

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
           S    L   +   L +L L +N+  +    T L  L  L  L L DN     I   +   
Sbjct: 122 SDINGLV--HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISD-IVP-LAGL 174

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL--LENLSSIQSLDLS 344
           T L++L LS NH S L    L     L+ L L S     +  +    L   +++++ D S
Sbjct: 175 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 345 FNELEW 350
               E 
Sbjct: 233 LVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 4e-17
 Identities = 51/376 (13%), Positives = 121/376 (32%), Gaps = 78/376 (20%)

Query: 259 LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSL 318
                  +  +L   +    +        S+  +  +++    +    +     +  L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 72

Query: 319 SSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVS 378
           + N+L   I    L NL ++  L L  N++     +  S   +L+               
Sbjct: 73  NGNKLT-DIKP--LTNLKNLGWLFLDENKI-----KDLSSLKDLKK-------------- 110

Query: 379 QVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLS 438
                        L+SL L +  +S  +   +     L S+ L  N I+      L +L+
Sbjct: 111 -------------LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLT 153

Query: 439 SLRYLDISNNQLNGTVSEI-HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSC 497
            L  L + +NQ+    S+I   A L+ L   Y S+N ++                DLR+ 
Sbjct: 154 KLDTLSLEDNQI----SDIVPLAGLTKLQNLYLSKNHIS----------------DLRA- 192

Query: 498 YLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTE 557
                    L    +L  L++     ++   N    ++   N +  ++  +      +++
Sbjct: 193 ---------LAGLKNLDVLELFSQECLNKPINHQ-SNLVVPNTVKNTDGSLV-TPEIISD 241

Query: 558 VSQLGTLDLSANN--LSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINL 615
                  ++  +    + ++  +    + +  +K +  G +   +      +       +
Sbjct: 242 DGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVI 301

Query: 616 EDNLLAGEIPDCWMNW 631
           +  + AG         
Sbjct: 302 KTKVEAGTRITAPKPP 317

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 1e-15
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 23/212 (10%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL-NLR 169
             ++  L L+ N    I+    L ++ NL +L L          N+I +LS+L+ L  L+
Sbjct: 64  LPNVTKLFLNGNKLTDIK---PLTNLKNLGWLFLDE--------NKIKDLSSLKDLKKLK 112

Query: 170 PNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHF 229
              L    + D+  L  L  LE+L L    ++ ++      + L  L  L L   Q+S  
Sbjct: 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISDI 168

Query: 230 PPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
            PL+    + L  L LS N   +      L GL NL  L+L          +   N    
Sbjct: 169 VPLA--GLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSN 321
             +  +    S + PE ++     E  ++  +
Sbjct: 224 NTVKNTDG--SLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 57/397 (14%), Positives = 114/397 (28%), Gaps = 79/397 (19%)

Query: 541 LSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHF 599
               +  I  +I      ++    +L   +++  +     +++  +  + + +       
Sbjct: 4   TITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI------- 55

Query: 600 VCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR 659
                    +  I  L                  +  L L+ NK T   P  L  L  L 
Sbjct: 56  -------KSVQGIQYL----------------PNVTKLFLNGNKLTDIKP--LTNLKNLG 90

Query: 660 SLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG 719
            L L  N +      SL +  +L+++ +  N  S ++        P++  L L +NK   
Sbjct: 91  WLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITD 145

Query: 720 VFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKF 779
           +  L    L  L  L L  N +S                             D       
Sbjct: 146 ITVLS--RLTKLDTLSLEDNQIS-----------------------------DIVPLAGL 174

Query: 780 FNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSH 839
             +   ++ +  I+     L   A L+ L  ++L + +   +     + L    ++  + 
Sbjct: 175 TKLQNLYLSKNHIS----DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 840 NFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQ 899
                  PE I      E  +   +  E     N V+ +F     I              
Sbjct: 231 GSL--VTPEIISDDGDYEKPNVKWHLPEF---TNEVSFIFYQPVTIGKAKARFHGRVTQP 285

Query: 900 FATFDSSSYIGDEYLCGPVLKKLCTVVDENGGGKDGY 936
                + SY  D  +    ++    +       K GY
Sbjct: 286 LKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGY 322

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 95.4 bits (238), Expect = 1e-20
 Identities = 77/441 (17%), Positives = 138/441 (31%), Gaps = 88/441 (19%)

Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ----GPIPDTIQNWTSLRHLD 293
             + +LD+   +  ++  A  L  L     + L D          I   ++   +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 294 LSSNHFS-----YLIPEWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDLS 344
           L SN         ++        +++ LSL +  L G     +SS L     ++Q L LS
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLS 121

Query: 345 FNELEWKIPRSFSRF-----CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399
            N L     +          C L  + L    LS      + ++         + L +SN
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSN 179

Query: 400 TTLSGSLTNQIGKFKV-----LNSVDLSENSISGQ----VPWSLGKLSSLRYLDISNNQL 450
             ++ +    + +        L ++ L    ++      +   +   +SLR L + +N+L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 451 NGT----VSEIHFANLSSLTFFYASRNSLT----------LKANPN-------------- 482
                  +        S L   +     +T          L+A  +              
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 483 ---------WVPVFQLEELDLRSCYLGP----PFPSWLHSQNHLVNLDISDSGIVDTIPN 529
                      P  QLE L ++SC         F S L     L+ L IS++ + D    
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 530 RFWKSITQFN----YLSLSNNQIHGE-IPNLTEV----SQLGTLDLSANN--------LS 572
              + + Q       L L++  +      +L         L  LDLS N         L 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 573 GQLPLLASNVMVLDLSKNKLS 593
             +      +  L L     S
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 80/445 (17%), Positives = 148/445 (33%), Gaps = 61/445 (13%)

Query: 112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLS----GAGFVGMIPNQIGNLSNLQYLN 167
             +  L++   +    +    L  +   + + L            I + +     L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 168 LRPNYLGGLYVEDL--GWLYDLSLLENLDLSGVDLSKVSNGPLVT--NALRSLLVLQLAG 223
           LR N LG + V  +  G       ++ L L    L+    G L +    L +L  L L+ 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 224 CQLSH--FPPLSVA---NFSSLVTLDLSHNQFDN---SLIATQLYGLCNLVFLDLSDNNF 275
             L       L          L  L L +          +A+ L    +   L +S+N+ 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 276 QGP----IPDTIQ-NWTSLRHLDLSSNHFSY----LIPEWLNKFSRLEYLSLSSNRLQGR 326
                  +   ++ +   L  L L S   +      +   +   + L  L+L SN+L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 327 ----ISSVLLENLSSIQSLDLSFNELEWK----IPRSFSRFCNLRSISLSGIQLSHQKVS 378
               +   LL   S +++L +    +  K    + R      +L+ +SL+G +L  +   
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA- 301

Query: 379 QVLAIFSGCVSDVLESLDLSNTTLSG----SLTNQIGKFKVLNSVDLSENSISGQVPWSL 434
           ++L          LESL + + + +       ++ + + + L  + +S N +       L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 435 GKL-----SSLRYLDISNNQLNGTVSEIHFA----NLSSLTFFYASRNSLTLK------- 478
            +      S LR L +++  +    S    A       SL     S N L          
Sbjct: 362 CQGLGQPGSVLRVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 479 --ANPNWVPVFQLEELDLRSCYLGP 501
               P       LE+L L   Y   
Sbjct: 421 SVRQPGC----LLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 88.5 bits (220), Expect = 2e-18
 Identities = 84/417 (20%), Positives = 131/417 (31%), Gaps = 87/417 (20%)

Query: 107 ALLDFEHLIYLNLSYNDF-------------------------------KGIQ-IPRFLG 134
           AL     L  LNL  N+                                 G   +   L 
Sbjct: 51  ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 135 SMGNLRFLDLSG-----AGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLYDLS 188
           ++  L+ L LS      AG   +    +     L+ L L    L     E L   L    
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 189 LLENLDLSGVDLSKVSNGPLVTNALR----SLLVLQLAGCQLSHFPPLSVANF----SSL 240
             + L +S  D++  +   ++   L+     L  L+L  C ++      +       +SL
Sbjct: 171 DFKELTVSNNDIN-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 241 VTLDLSHNQFDNS----LIATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHL 292
             L L  N+  +     L    L+    L  L + +          +   ++   SL+ L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 293 DLSSNHFS-----YLIPEWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDL 343
            L+ N         L    L    +LE L + S           SSVL +N   +  L +
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-RFLLELQI 348

Query: 344 SFNELEWKIPRSFSRF-----CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
           S N LE    R   +        LR + L+   +S    S + A      S  L  LDLS
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS--LRELDLS 406

Query: 399 N--------TTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL----SSLRYL 443
           N          L  S+       + L    L +   S ++   L  L     SLR +
Sbjct: 407 NNCLGDAGILQLVESVRQPGCLLEQL---VLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 78/454 (17%), Positives = 133/454 (29%), Gaps = 120/454 (26%)

Query: 287 TSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSL 341
             ++ LD+     S     E L    + + + L    L       ISS L  N  ++  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAEL 61

Query: 342 DLSFNELEWKIPRSFSRF-----CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
           +L  NEL         +      C ++ +SL    L+      + +      +  L+ L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT--LQELH 119

Query: 397 LSNTTLSGSLTNQIGKF-----KVLNSVDLSENSISGQVPWSLGKL----SSLRYLDISN 447
           LS+  L  +    + +        L  + L   S+S      L  +       + L +SN
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 448 NQLNGT----VSEIHFANLSSLTFFYASRNSLT----------LKANPNWVPVFQLEELD 493
           N +N      + +    +   L         +T          + +  +      L EL 
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS------LRELA 233

Query: 494 LRSCYLGPP-----FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
           L S  LG        P  LH  + L  L I + GI      +    + +     L     
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA----KGCGDLCR----VLRAK-- 283

Query: 549 HGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTR 608
                +L E      L L+ N L              D     L  ++L   C       
Sbjct: 284 ----ESLKE------LSLAGNELG-------------DEGARLLCETLLEPGCQ------ 314

Query: 609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK----LPTSLGALSLLRSLHLR 664
                                    L  L + +  FT        + L     L  L + 
Sbjct: 315 -------------------------LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 665 NNNL--SGTLPVSLG---NCTELETIDIGENEFS 693
           NN L  +G   +  G     + L  + + + + S
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 6e-11
 Identities = 58/302 (19%), Positives = 93/302 (30%), Gaps = 55/302 (18%)

Query: 104 INPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNL 163
           +   L        L +S N                    D++ AG   +      +   L
Sbjct: 162 LASVLRAKPDFKELTVSNN--------------------DINEAGVRVLCQGLKDSPCQL 201

Query: 164 QYLNLRPNYLGGLYVEDLGW-LYDLSLLENLDLSGVDLS-----KVSNGPLVTNALRSLL 217
           + L L    +      DL   +   + L  L L    L      ++  G L  +    L 
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS--SRLR 259

Query: 218 VLQLAGCQLSH--FPPLSVA--NFSSLVTLDLSHNQFDNS----LIATQLYGLCNLVFLD 269
            L +  C ++      L        SL  L L+ N+  +     L  T L   C L  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 270 LSDNNFQG----PIPDTIQNWTSLRHLDLSSNHFS----YLIPEWLNKF-SRLEYLSLSS 320
           +   +F           +     L  L +S+N         + + L +  S L  L L+ 
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 321 NRLQ----GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRF-----CNLRSISLSGIQ 371
             +       +++ LL N  S++ LDLS N L                C L  + L  I 
Sbjct: 380 CDVSDSSCSSLAATLLAN-HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 372 LS 373
            S
Sbjct: 439 WS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 61/365 (16%), Positives = 114/365 (31%), Gaps = 70/365 (19%)

Query: 388 VSDVLESLDLSNTTLSGSLTNQIGK-FKVLNSVDLSENSISGQ----VPWSLGKLSSLRY 442
           +S  ++SLD+    LS +   ++    +    V L +  ++      +  +L    +L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 443 LDISNNQLNGTVSEIHFANLSS----LTFFYASRNSLT----------LKANPNWVPVFQ 488
           L++ +N+L           L +    +         LT          L+  P       
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT------ 114

Query: 489 LEELDLRSCYLGPP-----FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFN---Y 540
           L+EL L    LG           L  Q  L  L +    +           +        
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 541 LSLSNNQIHGE-IPNLTEV-----SQLGTLDLSANNLSGQ-----LPLLASN--VMVLDL 587
           L++SNN I+   +  L +       QL  L L +  ++         ++AS   +  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 588 SKNKLSGSILHFVCHETNGTRLT-QIINLEDNLL----AGEIPDCWMNWRYLLVLRLDNN 642
             NKL    +  +C          + + + +  +     G++         L  L L  N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 643 KFTGKLPTSLGALSL----------LRSLHLRNNNLSGT----LPVSLGNCTELETIDIG 688
           +   +     GA  L          L SL +++ + +          L     L  + I 
Sbjct: 295 ELGDE-----GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 689 ENEFS 693
            N   
Sbjct: 350 NNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 69/468 (14%), Positives = 136/468 (29%), Gaps = 126/468 (26%)

Query: 489 LEELDLRSCYLGPPFPSWLHSQN-HLVNLDISDSGIVDTIPNRFWKSI-------TQFNY 540
           ++ LD++   L     + L         + + D G+ +       K I            
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE----ARCKDISSALRVNPALAE 60

Query: 541 LSLSNNQIHGE-IPNLTEV-----SQLGTLDLSANNLSGQ-----LPLLASN--VMVLDL 587
           L+L +N++    +  + +       ++  L L    L+G         L +   +  L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 588 SKNKLSGSILHFVCH--ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645
           S N L  + L  +C        RL                           L+L+    +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLE-------------------------KLQLEYCSLS 155

Query: 646 GK----LPTSLGALSLLRSLHLRNNNLSGT----LPVSLGNCTE-LETIDIGENEFSGNV 696
                 L + L A    + L + NN+++      L   L +    LE + +     + + 
Sbjct: 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 697 PAWIGERF---PRMIILILRSNKFH--GVFPL---ELCHLAFLKILVLAGNNLSGTIPTC 748
              +         +  L L SNK    G+  L    L   + L+ L +    ++      
Sbjct: 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT---AKG 272

Query: 749 ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEG-KTL--TFKAVL 805
                 +   L +                   ++ E  +    +  EG + L  T     
Sbjct: 273 CG---DLCRVLRAKE-----------------SLKELSLAGNELGDEGARLLCETLLEPG 312

Query: 806 RLLTNIDLSNNKFSGE----IPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL------ 855
             L ++ + +  F+        + +   R L  L +S+N        + G   L      
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-----DAGVRELCQGLGQ 367

Query: 856 ----LESLDFSSNRLEGE--------IPKNTVNLVFLSHFNISYNNLS 891
               L  L  +   +           +  N      L   ++S N L 
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHS----LRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 58/400 (14%), Positives = 111/400 (27%), Gaps = 96/400 (24%)

Query: 540 YLSLSNNQIHGE-IPNLTEV-SQLGTLDLSANNLSGQ-LPLLAS------NVMVLDLSKN 590
            L +   ++       L  +  Q   + L    L+      ++S       +  L+L  N
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 591 KLSGSILHFVCH--ETNGTRLTQIINLEDNLL----AGEIPDCWMNWRYLLVLRLDNNKF 644
           +L    +H V    +T   ++ Q ++L++  L     G +         L  L L +N  
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKI-QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

Query: 645 TGKLPTSLGALSL-----LRSLHLRNNNLSGT----LPVSLGNCTELETIDIGENEFSGN 695
                  L    L     L  L L   +LS      L   L    + + + +  N+ +  
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
               + +         L+ +               L+ L L    ++      +    A 
Sbjct: 186 GVRVLCQ--------GLKDSPCQ------------LEALKLESCGVTSDNCRDLCGIVAS 225

Query: 756 ATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815
              L                  +   +    + +  +      L        L  + +  
Sbjct: 226 KASL------------------RELALGSNKLGDVGMAELCPGL--LHPSSRLRTLWIWE 265

Query: 816 NKFSGE----IPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL----------LESLDF 861
              + +    +   +     L+ L+L+ N        + GA  L          LESL  
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELG-----DEGARLLCETLLEPGCQLESLWV 320

Query: 862 SSNRLEGE--------IPKNTVNLVFLSHFNISYNNLSGE 893
            S              + +N     FL    IS N L   
Sbjct: 321 KSCSFTAACCSHFSSVLAQNR----FLLELQISNNRLEDA 356

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.7 bits (230), Expect = 1e-20
 Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 23/285 (8%)

Query: 132 FLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLE 191
           + G       L              I    +L+ L +R   +    +     +  +S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFS----SLVTLDLSH 247
            L L  ++++  +  PL+      L +L L     +                L  L ++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 248 NQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ----NWTSLRHLDLSSNHFSYL- 302
                +    Q+     L  LDLSDN   G            + +L+ L L +       
Sbjct: 159 AHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 303 --IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFC 360
                      +L+ L LS N L+    +   +  S + SL+LSF  L+ ++P+      
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA-- 274

Query: 361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGS 405
            L  + LS  +L                   + +L L       S
Sbjct: 275 KLSVLDLSYNRLDR------NPSPDELPQ--VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 89.6 bits (222), Expect = 2e-19
 Identities = 46/227 (20%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFL-GSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
            +L    L  L L   +  G   P  L  +  +L  L+L    +       +  L     
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLK 148

Query: 166 LNLRPNYLGGLYVEDL--GWLYDLSLLENLDLS-----GVDLSKVSNGPLVTNALRSLLV 218
             L+   +   +  +     +     L  LDLS     G      +  PL    L+ L +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP 278
                   S       A    L  LDLSHN   ++  A        L  L+LS    +  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
                     L  LDLS N           +  ++  LSL  N    
Sbjct: 269 PKGLPAK---LSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 50/266 (18%), Positives = 77/266 (28%), Gaps = 20/266 (7%)

Query: 267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF---SRLEYLSLSSNRL 323
            L   D          I    SL+ L + +      I     +    S L+ L+L +  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 324 QGRISSVLLEN-LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA 382
            G     LLE     +  L+L             +         L  + ++         
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 383 IFSGCVSDVLESLDLSNTTLSGSLT-------NQIGKFKVLNSVDLSENSISGQVPWSLG 435
                    L +LDLS+    G           +    +VL   +    + SG       
Sbjct: 167 EQVRVFPA-LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 436 KLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR 495
               L+ LD+S+N L            S L     S   L     P  +P  +L  LDL 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLPA-KLSVLDLS 282

Query: 496 SCYL-GPPFPSWLHSQNHLVNLDISD 520
              L   P P  L     + NL +  
Sbjct: 283 YNRLDRNPSPDELPQ---VGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 63/316 (19%), Positives = 103/316 (32%), Gaps = 58/316 (18%)

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE--NLSSIQSLDLS 344
             L+ +D  ++   +     + K   L+ L++ + R+  RI    L    +S +Q L L 
Sbjct: 47  YLLKRVDTEADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 345 FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG 404
             E+    P             L+   +S       LA     +   L+ L ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 405 SLTNQIGKFKVLNSVDLSENSISGQVP----WSLGKLSSLRYLDISNNQLNGTVSEIHFA 460
               Q+  F  L+++DLS+N   G+          K  +L+ L + N  +  T S +  A
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSA 222

Query: 461 NLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISD 520
             ++                       QL+ LDL              S N L +     
Sbjct: 223 LAAARV---------------------QLQGLDL--------------SHNSLRDA---- 243

Query: 521 SGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG-QLPLLA 579
                          +Q N L+LS   +      L   ++L  LDLS N L     P   
Sbjct: 244 ------AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDEL 295

Query: 580 SNVMVLDLSKNKLSGS 595
             V  L L  N    S
Sbjct: 296 PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 62/337 (18%), Positives = 106/337 (31%), Gaps = 56/337 (16%)

Query: 570 NLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM 629
           N S   P  +S    L  +  +L G           G  L  ++   D           +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYG----------GGRSLEYLLKRVDTEADLGQFTDII 65

Query: 630 NWRYLLVLRLDNNKFTGKLPTS---LGALSLLRSLHLRNNNLSGTLPVSLGNCT--ELET 684
               L  L +   +   ++      +  +S L+ L L N  ++GT P  L   T  +L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 685 IDIGENEFSGNVPAWIGERF----PRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNN 740
           +++    ++    AW+ E      P + +L +           ++     L  L L+ N 
Sbjct: 126 LNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 741 LSGTIP----TCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEG 796
             G        C   F  +      ++                           + T  G
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNA--------------------------GMETPSG 218

Query: 797 KTLTFKAVLRLLTNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAMAL 855
                 A    L  +DLS+N       A       +L SLNLS      ++P+ + A   
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK-- 275

Query: 856 LESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892
           L  LD S NRL+   P     L  + + ++  N    
Sbjct: 276 LSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 36/220 (16%), Positives = 68/220 (30%), Gaps = 19/220 (8%)

Query: 540 YLSLSNNQIHGEIP----NLTEVSQLGTLDLSANNLSGQLP-----LLASNVMVLDLSKN 590
            L++   +I   I      +  +S L  L L    ++G  P         ++ +L+L   
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP- 649
             +         +       +++++          +    +  L  L L +N   G+   
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 650 ---TSLGALSLLRSLHLRNNN---LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGER 703
                      L+ L LRN      SG          +L+ +D+  N       A   + 
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 704 FPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG 743
             ++  L L       V        A L +L L+ N L  
Sbjct: 252 PSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 51/278 (18%), Positives = 82/278 (29%), Gaps = 23/278 (8%)

Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF---QLE 490
            G   SL YL    +               SL         +  +     + V     L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 491 ELDLRSCYLGPPFPSWLHSQNH--LVNLDISD---SGIVDTIPNRFWKSITQFNYLSLSN 545
           EL L +  +    P  L       L  L++ +   +     +             LS++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 546 NQIHGEIPNLTEV-SQLGTLDLSANNLSGQLPLLAS-------NVMVLDLSKNKLSGSIL 597
                       V   L TLDLS N   G+  L+++        + VL L    +     
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 598 HFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW-RYLLVLRLDNNKFTGKLPTSLGALS 656
                     +L Q ++L  N L         +W   L  L L       ++P  L   +
Sbjct: 219 VCSALAAARVQL-QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PA 274

Query: 657 LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG 694
            L  L L  N L    P S     ++  + +  N F  
Sbjct: 275 KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 58/329 (17%), Positives = 109/329 (33%), Gaps = 50/329 (15%)

Query: 528 PNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDL 587
           P   W S   FN L  ++ +++G   +L  + +    +      +  +  L  ++  L +
Sbjct: 20  PKPDWSSA--FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL--SLKRLTV 75

Query: 588 SKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCW--MNWRYLLVLRLDNNKFT 645
              ++   IL         + L ++  LE+  + G  P          L +L L N  + 
Sbjct: 76  RAARIPSRILFGALRVLGISGLQEL-TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 646 G--KLPTSLGALSL--LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVP---A 698
                   L       L+ L +   +        +     L T+D+ +N   G      A
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 699 WIGERFPRMIILILRSNKFH---GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
               +FP + +L LR+       GV          L+ L L+ N+L         ++ + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 756 ATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815
              L            + SF        +Q                K +   L+ +DLS 
Sbjct: 255 LNSL------------NLSF-----TGLKQV--------------PKGLPAKLSVLDLSY 283

Query: 816 NKFSGEIPAEITVLRELRSLNLSHNFFSG 844
           N+     P+    L ++ +L+L  N F  
Sbjct: 284 NRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 38/173 (21%), Positives = 51/173 (29%), Gaps = 28/173 (16%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
             +  F  L  L+LS N          LG  G +  L                    LQ 
Sbjct: 167 EQVRVFPALSTLDLSDN--------PELGERGLISALCP-------------LKFPTLQV 205

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
           L LR   +                L+ LDLS   L   +      +    L  L L+   
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTG 264

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP 278
           L   P       + L  LDLS+N+ D +        L  +  L L  N F   
Sbjct: 265 LKQVPK---GLPAKLSVLDLSYNRLDRN---PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 30/254 (11%), Positives = 60/254 (23%), Gaps = 56/254 (22%)

Query: 653 GALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGE--RFPRMIIL 710
           G  SL   L   +          +     L+ + +        +            +  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 711 ILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYP 770
            L + +  G  P  L       + +L   N+S                            
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR------------------------ 136

Query: 771 SDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR 830
              ++  +                         +   L  + ++          ++ V  
Sbjct: 137 --DAWLAELQQW---------------------LKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 831 ELRSLNLSHNFFSGRIPENI----GAMALLESLDFSSNRLE---GEIPKNTVNLVFLSHF 883
            L +L+LS N   G               L+ L   +  +E   G         V L   
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 884 NISYNNLSGEVPDE 897
           ++S+N+L       
Sbjct: 234 DLSHNSLRDAAGAP 247

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 2e-20
 Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 36/273 (13%)

Query: 418 SVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477
           S +   N+ISG                +     N  VS +    ++  +    +R +L+ 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 478 KANPNWVPVFQLEELDLRSCYLG--PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
            + P+ +P  Q+  L++    L   P  P+       L  LD  D+ +  T+P    +  
Sbjct: 73  -SLPDNLPP-QITVLEITQNALISLPELPA------SLEYLDACDNRL-STLP----ELP 119

Query: 536 TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSG- 594
               +L + NNQ+   +P L   + L  ++   N L+  LP L +++ VL +  N+L+  
Sbjct: 120 ASLKHLDVDNNQLT-MLPEL--PALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFL 175

Query: 595 -SILHFVCHETNGTRLTQIINLEDNLLAG---EIPDCWMNWRYLLVLRLDNNKFTGKLPT 650
             +            L   +++  NLL            +    +  R   N+ T  +P 
Sbjct: 176 PELP---------ESLEA-LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPE 224

Query: 651 SLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE 683
           ++ +L    ++ L +N LS  +  SL   T   
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.3 bits (229), Expect = 2e-19
 Identities = 57/327 (17%), Positives = 117/327 (35%), Gaps = 71/327 (21%)

Query: 156 QIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRS 215
            I N  +L   N   N + G Y +   +       E   L G +              R+
Sbjct: 6   PINNNFSLS-QNSFYNTISGTYAD---YFSAWDKWEKQALPGEN--------------RN 47

Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN--SLIATQLYGLCNLVFLDLSDN 273
             V  L  C ++               L L+     +    +         +  L+++ N
Sbjct: 48  EAVSLLKECLINQ-----------FSELQLNRLNLSSLPDNLPP------QITVLEITQN 90

Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE 333
                +P+      SL +LD   N  S L PE     + L++L + +N+L     ++L E
Sbjct: 91  ALI-SLPELP---ASLEYLDACDNRLSTL-PE---LPASLKHLDVDNNQL-----TMLPE 137

Query: 334 NLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLE 393
             + ++ ++   N+L   +P   +   +L  +S+   QL+   + ++         + LE
Sbjct: 138 LPALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTF--LPELP--------ESLE 183

Query: 394 SLDLSNTTLSGSLTNQIGKFKVLNSV----DLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
           +LD+S   L  SL     +              EN I+  +P ++  L     + + +N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 450 LNGTVSEIHFANLSSLTFFYASRNSLT 476
           L+ +      +  ++   ++  R   +
Sbjct: 242 LS-SRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 2e-18
 Identities = 46/273 (16%), Positives = 86/273 (31%), Gaps = 46/273 (16%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNL----SNLQYL 166
                 L L+  +     +P  L     +  L+++         N + +L    ++L+YL
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQ--------NALISLPELPASLEYL 105

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           +   N L  L           + L++LD+    L+ +   P        L  +     QL
Sbjct: 106 DACDNRLSTL-------PELPASLKHLDVDNNQLTMLPELP------ALLEYINADNNQL 152

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
           +  P L     +SL  L + +NQ    L         +L  LD+S N  +  +P      
Sbjct: 153 TMLPEL----PTSLEVLSVRNNQL-TFLPEL----PESLEALDVSTNLLES-LPAVPVRN 202

Query: 287 TSLR----HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL--LENLSSIQS 340
                         N  +++ PE +        + L  N L  RI   L           
Sbjct: 203 HHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
             + F+  + +         +  +      + S
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 9e-16
 Identities = 69/395 (17%), Positives = 115/395 (29%), Gaps = 65/395 (16%)

Query: 292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSS---NRLQGRISSVLLENLSSIQSLDLSFNEL 348
            +   N  S    ++ + + + E  +L     N     +   L+        L L+   L
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF---SELQLNRLNL 71

Query: 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTN 408
              +P +      +  + ++   L       +  + +      LE LD  +  LS +L  
Sbjct: 72  S-SLPDNLPP--QITVLEITQNALIS-----LPELPAS-----LEYLDACDNRLS-TLPE 117

Query: 409 QIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFF 468
                K L+   +  N ++  +P        L Y++  NNQL   + E      +SL   
Sbjct: 118 LPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE----LPTSLEVL 165

Query: 469 YASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIP 528
               N LT    P       LE LD+              S N L +L           P
Sbjct: 166 SVRNNQLT--FLPELPE--SLEALDV--------------STNLLESLPAV--------P 199

Query: 529 NRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDL 587
            R   S     +     N+I   IP N+  +    T+ L  N LS ++    S       
Sbjct: 200 VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 588 SKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK 647
                          + N         +       +  D    W          N F+  
Sbjct: 259 YHGPR--IYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE-EHANTFSAF 315

Query: 648 LPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTEL 682
           L   L      R+       ++  L   L    EL
Sbjct: 316 L-DRLSDTVSARNTSGFREQVAAWLE-KLSASAEL 348

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 5e-15
 Identities = 57/370 (15%), Positives = 108/370 (29%), Gaps = 90/370 (24%)

Query: 539 NYLSLSNNQIHGEIPNL-----TEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSK 589
           N  SLS N  +  I        +   +     L   N +  + LL     +    L L++
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 590 NKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP 649
             LS         +    ++  ++ +  N L   +P+   +   L  L   +N+ +  LP
Sbjct: 69  LNLS------SLPDNLPPQI-TVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLP 116

Query: 650 TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII 709
               +L   + L + NN L+  LP        LE I+   N+ +  +P         + +
Sbjct: 117 ELPASL---KHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPT----SLEV 164

Query: 710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQY 769
           L +R+N+   +  L       L+ L ++ N L  ++P                       
Sbjct: 165 LSVRNNQLTFLPEL----PESLEALDVSTNLLE-SLPAVPVRNHHS-------------- 205

Query: 770 PSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVL 829
                                                         N+ +  IP  I  L
Sbjct: 206 -----------------------------------EETEIFFRCRENRIT-HIPENILSL 229

Query: 830 RELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNN 889
               ++ L  N  S RI E++         D+   R+   +     N +     +     
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 890 LSGEVPDEAQ 899
                  +  
Sbjct: 288 FPENKQSDVS 297

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 54/298 (18%), Positives = 104/298 (34%), Gaps = 51/298 (17%)

Query: 154 PNQIGNLSNLQYL-NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNA 212
           P  I  +     L N      G   V D     DL  +  L   G  ++ +         
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG----VQY 61

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
           L +L+ L+L   Q++   PL   N + +  L+LS N          +  +  L       
Sbjct: 62  LNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPL------KNVSAIAGL------- 106

Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
                          S++ LDL+S   + + P  L   S L+ L L  N++   IS   L
Sbjct: 107 --------------QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP--L 147

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
             L+++Q L +   ++   +    +    L ++     ++S       ++  +   +  L
Sbjct: 148 AGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKISD------ISPLASLPN--L 197

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
             + L N  +S  ++  +     L  V L+  +I+ Q  +    L     +   +   
Sbjct: 198 IEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 26/244 (10%)

Query: 106 PALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQY 165
               D + +  L+        I+    +  + NL  L+L          NQI +L+ L+ 
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKD--------NQITDLAPLKN 83

Query: 166 L-NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           L  +    L G  ++++  +  L  ++ LDL+   ++ V+        L +L VL L   
Sbjct: 84  LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLN 139

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
           Q+++  PL+    ++L  L + + Q  +    T L  L  L  L   DN      P  + 
Sbjct: 140 QITNISPLA--GLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDISP--LA 192

Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
           +  +L  + L +N  S + P  L   S L  ++L++  +          NL     +   
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVKGP 249

Query: 345 FNEL 348
               
Sbjct: 250 SGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 48/265 (18%), Positives = 100/265 (37%), Gaps = 37/265 (13%)

Query: 332 LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDV 391
              L++   +    + +      + +    + ++S  G  ++       +       +  
Sbjct: 15  DPALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTT------IEGVQYLNN-- 64

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           L  L+L +  ++  L   +     +  ++LS N +       +  L S++ LD+++ Q+ 
Sbjct: 65  LIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT 120

Query: 452 GTVSEIHFANLSSLTFFYASRNSLT----LKANPNWVPVFQLEELDLRSCYLG--PPFPS 505
                   A LS+L   Y   N +T    L    N      L+ L + +  +    P   
Sbjct: 121 ---DVTPLAGLSNLQVLYLDLNQITNISPLAGLTN------LQYLSIGNAQVSDLTP--- 168

Query: 506 WLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLD 565
            L + + L  L   D+ I D  P     S+     + L NNQI  ++  L   S L  + 
Sbjct: 169 -LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVT 223

Query: 566 LSANNLSGQLPLLASNVMVLDLSKN 590
           L+   ++ Q     +N++V ++ K 
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 60/382 (15%), Positives = 110/382 (28%), Gaps = 106/382 (27%)

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
           + + +    S + DT+       +     LS     +   I  +  ++ L  L+L  N +
Sbjct: 20  NAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI 75

Query: 572 SGQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
           +   PL   + +  L+LS N L                   +  +               
Sbjct: 76  TDLAPLKNLTKITELELSGNPL-----------------KNVSAIA-------------G 105

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
            + +  L L + + T    T L  LS L+ L+L  N ++   P  L   T L+ + IG  
Sbjct: 106 LQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161

Query: 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750
           + S ++                            L +L+ L  L    N +S        
Sbjct: 162 QVS-DLTP--------------------------LANLSKLTTLKADDNKIS-------- 186

Query: 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTN 810
                                D S      N+ E  ++   I+     ++  A    L  
Sbjct: 187 ---------------------DISPLASLPNLIEVHLKNNQIS----DVSPLANTSNLFI 221

Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI-PENIGAMALLESLDFSSNRLEGE 869
           + L+N   + +    +     L   N+        I P  I       S + + N     
Sbjct: 222 VTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSF- 277

Query: 870 IPKNTVNLVFLSHFNISYNNLS 891
              N V+  F          + 
Sbjct: 278 --INNVSYTFNQSVTFKNTTVP 297

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 84.6 bits (210), Expect = 5e-18
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 27/221 (12%)

Query: 138 NLRFLDLSGAGFVGMIPNQI--------GNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSL 189
           + + LDLS         N +         +   LQ L+L    +  +   + G    LS 
Sbjct: 29  STKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSH 77

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
           L  L L+G  +  ++ G    + L SL  L      L+      + +  +L  L+++HN 
Sbjct: 78  LSTLILTGNPIQSLALG--AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLR----HLDLSSNHFSYLIPE 305
             +  +      L NL  LDLS N  Q      ++    +      LDLS N  ++ I  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP 194

Query: 306 WLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
              K  RL+ L+L +N+L+  +   + + L+S+Q + L  N
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 55/259 (21%), Positives = 92/259 (35%), Gaps = 53/259 (20%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           S   L L+   L H    S  +F  L  LDLS  +   ++       L +L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
            Q          +SL+ L     + + L    +     L+ L+++ N +Q         N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
           L++++ LDLS N++   I  +                                   VL  
Sbjct: 148 LTNLEHLDLSSNKI-QSIYCT---------------------------DL-----RVLHQ 174

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTV 454
           + L N +L                 DLS N ++   P +  ++  L+ L +  NQL  +V
Sbjct: 175 MPLLNLSL-----------------DLSLNPMNFIQPGAFKEI-RLKELALDTNQLK-SV 215

Query: 455 SEIHFANLSSLTFFYASRN 473
            +  F  L+SL   +   N
Sbjct: 216 PDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 46/226 (20%)

Query: 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338
           IPD +    S ++LDLS N   +L       F  L+ L LS   +Q  I     ++LS +
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
            +L L+ N               ++S++              L  FSG  S  L+ L   
Sbjct: 79  STLILTGN--------------PIQSLA--------------LGAFSGLSS--LQKLVAV 108

Query: 399 NTTLSGSLTNQI-GKFKVLNSVDLSENSI-SGQVPWSLGKLSSLRYLDISNNQLNGTVSE 456
            T L+ SL N   G  K L  ++++ N I S ++P     L++L +LD+S+N++  ++  
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 457 IHFANLSSLTFFYASRNSLTLKANP-NWVP--VF---QLEELDLRS 496
                L  +        SL L  NP N++    F   +L+EL L +
Sbjct: 167 TDLRVLHQMPLLN---LSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 46/262 (17%), Positives = 81/262 (30%), Gaps = 76/262 (29%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LK 478
           DLS N +     +S      L+ LD+S  ++  T+ +  + +LS L+    + N +  L 
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 479 ANPNWVPVF----QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
                   F     L++L      L                          ++ N     
Sbjct: 93  LG-----AFSGLSSLQKLVAVETNL-------------------------ASLENFPIGH 122

Query: 535 ITQFNYLSLSNNQIHGEIPN---LTEVSQLGTLDLSANNLS-------GQLPLLASNVMV 584
           +     L++++N I          + ++ L  LDLS+N +          L  +    + 
Sbjct: 123 LKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 585 LDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKF 644
           LDLS N ++  I      E                              L  L LD N+ 
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIR----------------------------LKELALDTNQL 212

Query: 645 TGKLPTSLGALSLLRSLHLRNN 666
                     L+ L+ + L  N
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG---------NLSNL 163
            L  L     +   ++     G +  L+ L+++         N I          NL+NL
Sbjct: 101 SLQKLVAVETNLASLENFPI-GHLKTLKELNVAH--------NLIQSFKLPEYFSNLTNL 151

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLE-NLDLSGVDLSKVSNGPLVTNALRSLLVLQLA 222
           ++L+L  N +  +Y  DL  L+ + LL  +LDLS   ++ +  G         L  L L 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLKELALD 208

Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFD 251
             QL   P       +SL  + L  N +D
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 26/242 (10%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL- 166
              F   I  NL                + ++  +  +         + I ++  +QYL 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANN--------SDIKSVQGIQYLP 68

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           N+   +L G  + D+  L +L  L  L L    +  +S+       L+ L  L L    +
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGI 124

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
           S    L   +   L +L L +N+  +    T L  L  L  L L DN     +P  +   
Sbjct: 125 SDINGLV--HLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
           T L++L LS NH S L    L     L+ L L S             NL    ++  +  
Sbjct: 178 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDG 234

Query: 347 EL 348
            L
Sbjct: 235 SL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 48/244 (19%), Positives = 97/244 (39%), Gaps = 29/244 (11%)

Query: 235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD--TIQNWTSLRHL 292
             F+  +  +L      +   A     L ++  +  ++++    I     IQ   ++  L
Sbjct: 21  DAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 73

Query: 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI 352
            L+ N  + + P  L     L +L L  N+++  +SS  L++L  ++SL L  N +   I
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGIS-DI 127

Query: 353 PRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGK 412
                    L S+ L   +++       + + S      L++L L +  +S  +   +  
Sbjct: 128 N-GLVHLPQLESLYLGNNKITD------ITVLSRLTK--LDTLSLEDNQIS-DIVP-LAG 176

Query: 413 FKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR 472
              L ++ LS+N IS     +L  L +L  L++ + +        H +NL        + 
Sbjct: 177 LTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTD 233

Query: 473 NSLT 476
            SL 
Sbjct: 234 GSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 33/251 (13%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL- 166
           +    ++  L L+ N    I+    L ++ NL +L L          N++ +LS+L+ L 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDE--------NKVKDLSSLKDLK 112

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
            L+   L    + D+  L  L  LE+L L    ++ ++      + L  L  L L   Q+
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQI 168

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
           S   PL+    + L  L LS N   +      L GL NL  L+L          +   N 
Sbjct: 169 SDIVPLA--GLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
                +  +    S + PE ++     E  ++  +          L   ++  S      
Sbjct: 224 VVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWH----------LPEFTNEVSFIFYQP 271

Query: 347 ELEWKIPRSFS 357
               K    F 
Sbjct: 272 VTIGKAKARFH 282

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 57/264 (21%)

Query: 332 LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDV 391
            +  +     +L    +      + +   ++  I  +   +        +       +  
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAV-TQNELNSIDQIIANNSDIKS------VQGIQYLPN-- 69

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
           +  L L+   L+  +   +   K L  + L EN +       L  L  L+ L + +N + 
Sbjct: 70  VTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI- 124

Query: 452 GTVSEI-HFANLSSLTFFYASRNSLT----LKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
              S+I    +L  L   Y   N +T    L           L+ L L            
Sbjct: 125 ---SDINGLVHLPQLESLYLGNNKITDITVLSRLTK------LDTLSL------------ 163

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDL 566
               N + ++                  +T+   L LS N I  ++  L  +  L  L+L
Sbjct: 164 --EDNQISDIV-------------PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLEL 207

Query: 567 SANNLSGQLPLLASNVMVLDLSKN 590
            +     +     SN++V +  KN
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 19/203 (9%)

Query: 541 LSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHF 599
                  I  +I +    ++    +L   +++  +     +++  +  + + +    +  
Sbjct: 7   TITVPTPIK-QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG 63

Query: 600 VCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR 659
           + +  N T+L     L  N L    P    N + L  L LD NK    L +SL  L  L+
Sbjct: 64  IQYLPNVTKL----FLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DL-SSLKDLKKLK 115

Query: 660 SLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG 719
           SL L +N +S  +   L +  +LE++ +G N+ +         R  ++  L L  N+   
Sbjct: 116 SLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITVL---SRLTKLDTLSLEDNQISD 170

Query: 720 VFPLELCHLAFLKILVLAGNNLS 742
           + PL    L  L+ L L+ N++S
Sbjct: 171 IVPLA--GLTKLQNLYLSKNHIS 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.1 bits (208), Expect = 2e-17
 Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 13/234 (5%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           N   L         +         +L+ + +  N +  L V +     +L  L  + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV--LEVIEADVFSNLPKLHEIRIEK 88

Query: 198 V-DLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIA 256
             +L  ++        L +L  L ++   + H P +   +    V LD+  N   +++  
Sbjct: 89  ANNLLYINPE--AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 257 TQLYGLC-NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSS-NHFSYLIPEWLNKFSRLE 314
               GL    V L L+ N  Q  I ++  N T L  L+LS  N+   L  +  +  S   
Sbjct: 147 NSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
            L +S  R+   + S  LENL  +++      +   K+P +  +   L   SL+
Sbjct: 206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 52/343 (15%), Positives = 111/343 (32%), Gaps = 31/343 (9%)

Query: 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN 252
                  ++++   P  ++  R+ + L+    +L      + + F  L  +++S N    
Sbjct: 14  FLCQESKVTEI---P--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 253 SLIATQLYGLCNLVFLDLSDNNFQGPIP-DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFS 311
            + A     L  L  + +   N    I  +  QN  +L++L +S+    +L         
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 312 RLEYLSLSSNRLQGRISSVLLENLSS-IQSLDLSFNELEWKIPRSFSRFCNLRSISLSG- 369
           +   L +  N     I       LS     L L+ N ++  I  S      L  ++LS  
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187

Query: 370 --IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
             ++           +F G        LD+S T +    +      + L  +        
Sbjct: 188 NNLEELPND------VFHGASG--PVILDISRTRIH---SLPSYGLENLKKLRARSTYNL 236

Query: 428 GQVPWSLGKLSSLRYLDISNN-QLNGTVSEIHFAN-LSSLTFFYASRNSLTLKANPNWVP 485
            ++P +L KL +L    ++             FAN    ++  +   N   L+   +++ 
Sbjct: 237 KKLP-TLEKLVALMEASLTYPSHCCA------FANWRRQISELHPICNKSILRQEVDYMT 289

Query: 486 VFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIP 528
             + +   L           +  +         ++   V   P
Sbjct: 290 QARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSP 332

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 11/218 (5%)

Query: 107 ALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQY 165
           A   F  L  + +S ND   +       ++  L  + +  A  +  I  +   NL NLQY
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG-VDLSKVSNGPLVTNALRSLLVLQLAGC 224
           L +    +  L                LD+   +++  +             ++L L   
Sbjct: 109 LLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNSF-VGLSFESVILWLNKN 164

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ 284
            +      +             +N  +  L     +G    V LD+S           ++
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR 322
           N   LR       +   L    L K   L   SL+   
Sbjct: 224 NLKKLRARST--YNLKKLPT--LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 82/325 (25%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
                 E+ ++ ++P  L    +   L     +L   + +  F+    L     S+N + 
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
                +   VF     +L                  L  + I  +  +  I    ++++ 
Sbjct: 68  EVIEAD---VFS----NLPK----------------LHEIRIEKANNLLYINPEAFQNLP 104

Query: 537 QFNYLSLSNNQIHGEIPNLT--EVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSG 594
              YL +SN  I   +P++      Q   LD+  N                         
Sbjct: 105 NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI------------------------ 139

Query: 595 SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA 654
                            I  +E N   G   +        ++L L+ N       ++   
Sbjct: 140 ----------------NIHTIERNSFVGLSFE-------SVILWLNKNGIQEIHNSAFNG 176

Query: 655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714
             L       NNNL           +    +DI       ++P++  E   ++      +
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 235

Query: 715 NKFHGVFPLELCHLAFLKILVLAGN 739
            K           L  L    L   
Sbjct: 236 LKKLPTLE----KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 28/217 (12%)

Query: 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVS-LGNCTELETIDIGENEFSGN 695
           LR    K       +      L  + +  N++   +      N  +L  I I +      
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
           +     +  P +  L++ +     +  +   H     +L +  N    TI      F  +
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS--FVGL 152

Query: 756 AT-----FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLT------FKAV 804
           +      +L  + I  I            FN T+    +EL   +   L       F   
Sbjct: 153 SFESVILWLNKNGIQEI--------HNSAFNGTQL---DELNLSDNNNLEELPNDVFHG- 200

Query: 805 LRLLTNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHN 840
                 +D+S  +    +P+     L++LR+ +  + 
Sbjct: 201 ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 15/255 (5%)

Query: 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNV 696
                +K T ++P+ L        L      L      +     +LE I+I +N+    +
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 697 PAWIGERFPRMIIL-ILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
            A +    P++  + I ++N    + P    +L  L+ L+++   +   +P      +  
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQ 129

Query: 756 ATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE-ELITLEGKTLTFKAVLRLLTNIDLS 814
              L       I      SF G  F     ++ +  +  +           +L       
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG---TQLDELNLSD 186

Query: 815 NNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873
           NN    E+P ++         L++S       +P     +  L+ L   S     ++P  
Sbjct: 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPTL 242

Query: 874 TVNLVFLSHFNISYN 888
              LV L   +++Y 
Sbjct: 243 E-KLVALMEASLTYP 256

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.2 bits (196), Expect = 6e-17
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 200 LSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL 259
           L + S   +    + SL  + LA   ++    +      ++  L +++    N      +
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATN---YNPI 84

Query: 260 YGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
            GL NL  L +   +        +   TSL  LD+S +     I   +N   ++  + LS
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 320 SNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
            N     I    L+ L  ++SL++ F+ +     R    F  L  +      + 
Sbjct: 145 YNGAITDIMP--LKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 34/169 (20%), Positives = 76/169 (44%), Gaps = 13/169 (7%)

Query: 157 IGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSL 216
              +++L Y+ L         V DL  +     +++L ++ +  +  +  P+  + L +L
Sbjct: 40  EAQMNSLTYITLANIN-----VTDLTGIEYAHNIKDLTINNIHATNYN--PI--SGLSNL 90

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
             L++ G  ++     +++  +SL  LD+SH+  D+S++ T++  L  +  +DLS N   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAI 149

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
             I   ++    L+ L++  +         +  F +L  L   S  + G
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 21/171 (12%), Positives = 62/171 (36%), Gaps = 14/171 (8%)

Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
           T     SL ++ L++ + + L    +     ++ L++++       +   +  LS+++ L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN-YNP--ISGLSNLERL 93

Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTT 401
            +   ++      + S   +L  + +S        +++     +      + S+DLS   
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK----INTLPK--VNSIDLSYNG 147

Query: 402 LSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
               +   +     L S+++  + +       +     L  L   +  + G
Sbjct: 148 AITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 23/177 (12%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
           Q   +++    ++S+  + L+   +   +        N++ ++++ I  ++         
Sbjct: 32  QSSTANITEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN------YNP 83

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
            SG  +  LE L +    ++      +     L  +D+S ++    +   +  L  +  +
Sbjct: 84  ISGLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLT----LKANPNWVPVFQLEELDLRS 496
           D+S N     +  +    L  L       + +     ++  P       L +L   S
Sbjct: 142 DLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRGIEDFPK------LNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 19/143 (13%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
             ++  L ++            +  + NL  L + G          +  L++L  L++  
Sbjct: 65  AHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSG----VDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           +      +  +     L  + ++DLS      D+  +         L  L  L +    +
Sbjct: 122 SAHDDSILTKIN---TLPKVNSIDLSYNGAITDIMPLKT-------LPELKSLNIQFDGV 171

Query: 227 SHFPPLSVANFSSLVTLDLSHNQ 249
             +  +   +F  L  L      
Sbjct: 172 HDYRGIE--DFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 413 FKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR 472
           FK   +  L ++S +     +  +++SL Y+ ++N  +             ++     + 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75

Query: 473 NSLT----LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIP 528
              T    +    N      LE L +    +       L     L  LDIS S   D+I 
Sbjct: 76  IHATNYNPISGLSN------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 529 NRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVLDL 587
            +   ++ + N + LS N    +I  L  + +L +L++  + +     +     +  L  
Sbjct: 130 TKI-NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188

Query: 588 SKNKLSG 594
               + G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 35/206 (16%)

Query: 539 NYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSIL 597
            YL+    Q         +++ L  + L+  N++    +  A N+  L ++         
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA----- 78

Query: 598 HFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSL 657
                 TN   ++ + NLE                    LR+     T     +L  L+ 
Sbjct: 79  ------TNYNPISGLSNLE-------------------RLRIMGKDVTSDKIPNLSGLTS 113

Query: 658 LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKF 717
           L  L + ++    ++   +    ++ +ID+  N    ++     +  P +  L ++ +  
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGV 171

Query: 718 HGVFPLELCHLAFLKILVLAGNNLSG 743
           H    +E      L  L      + G
Sbjct: 172 HDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
           L  L  + +     + +    ++ L  L  L++SH+     I   I  +  + S+D S N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 865 RLEGEIPKNTVNLVFLSHFNISYNNLS 891
               +I      L  L   NI ++ + 
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVH 172

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 82.6 bits (204), Expect = 7e-17
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
              LDLS  +LS++      T  L +L  L L+   L+     +     +L  LDLS N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPE---W 306
             ++L       L  L  L L +N+      +  ++   L+ L LS N  S    E    
Sbjct: 100 L-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
            NK  +L  L LSSN+L+ ++    L+ L +     L  + 
Sbjct: 159 GNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 4/154 (2%)

Query: 218 VLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           +L L+   LS           ++L +L LSHN   N + +     + NL +LDLS N+  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL--LEN 334
                   +  +L  L L +NH   +        ++L+ L LS N++      ++     
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
           L  +  LDLS N+L+        +        L 
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 56/221 (25%), Positives = 82/221 (37%), Gaps = 40/221 (18%)

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW-LNKFSRLEYLSLSSN 321
           C    L  S       +P ++ ++T    LDLS N+ S L  EW   + + L  L LS N
Sbjct: 18  CASNILSCSKQQLPN-VPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74

Query: 322 RLQGRISSVLLENLSSIQSLDLSFNELEWKIPR-SFSRFCNLRSISLSGIQLSHQKVSQV 380
            L   ISS     + +++ LDLS N L   +    FS    L  + L    +    V + 
Sbjct: 75  HLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI--VVVDR- 129

Query: 381 LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSL 440
              F       L+ L LS         NQI             +    ++     KL  L
Sbjct: 130 -NAFEDMAQ--LQKLYLSQ--------NQI-------------SRFPVELIKDGNKLPKL 165

Query: 441 RYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANP 481
             LD+S+N+L   +       L +       +N L L  NP
Sbjct: 166 MLLDLSSNKLK-KLPLTDLQKLPAWV-----KNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 41/214 (19%), Positives = 62/214 (28%), Gaps = 59/214 (27%)

Query: 116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGG 175
            L+LS+N+   ++       + NL  L LS         N +  +S+             
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH--------NHLNFISS------------- 81

Query: 176 LYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA 235
                      +  L  LDLS                             L        +
Sbjct: 82  ------EAFVPVPNLRYLDLS--------------------------SNHLHTLDEFLFS 109

Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW---TSLRHL 292
           +  +L  L L +N     +       +  L  L LS N       + I++      L  L
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168

Query: 293 DLSSNHFSYLIPEWLNKFSRL--EYLSLSSNRLQ 324
           DLSSN    L    L K        L L +N L+
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
           N +  S+  +   VP SL   S    LD+S+N L+   +E     L++L     S N L 
Sbjct: 21  NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
             ++  +VPV  L  LDL S +L             L  L + ++ I   +    ++ + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMA 136

Query: 537 QFNYLSLSNNQI----HGEIPNLTEVSQLGTLDLSANNLS 572
           Q   L LS NQI       I +  ++ +L  LDLS+N L 
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 31/142 (21%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY 172
           +L YL+LS N    +        +  L  L L          N I  +            
Sbjct: 89  NLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYN--------NHIVVVDR---------- 129

Query: 173 LGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVT-NALRSLLVLQLAGCQLSHFPP 231
                        D++ L+ L LS   +S+     +   N L  L++L L+  +L   P 
Sbjct: 130 ---------NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 232 LSVANFSSLV--TLDLSHNQFD 251
             +    + V   L L +N  +
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 11/185 (5%)

Query: 563 TLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLA 621
            L  S   L   +P  L S   +LDLS N LS   L      T  T L  +  L  N L 
Sbjct: 22  ILSCSKQQLP-NVPQSLPSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSL-LLSHNHLN 77

Query: 622 GEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681
               + ++    L  L L +N            L  L  L L NN++      +  +  +
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 682 LETIDIGENEFSGNVPAWI---GERFPRMIILILRSNKFHGVFPLELCHLAFLK--ILVL 736
           L+ + + +N+ S   P  +   G + P++++L L SNK   +   +L  L       L L
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 737 AGNNL 741
             N L
Sbjct: 197 HNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 805 LRLLTNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFS 862
           L  L ++ LS+N  +  I +E    +  LR L+LS N     + E +   +  LE L   
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 863 SNRLEGEIPKNT-VNLVFLSHFNISYNNLSGEVPDEAQFATFDS 905
           +N +   + +N   ++  L    +S N +S   P E      + 
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL-IKDGNK 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 51/180 (28%), Positives = 67/180 (37%), Gaps = 8/180 (4%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
              L LS   L   S           L  L L   +L+            L TLDLSHNQ
Sbjct: 33  TTILHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ 88

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNK 309
                +      L  L  LD+S N         ++    L+ L L  N    L P  L  
Sbjct: 89  L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 310 FSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
             +LE LSL++N L   + + LL  L ++ +L L  N L   IP+ F     L    L G
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 11/186 (5%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
            +   L+L  N L       L  L   + L  L+L   +L+K+     V   L  L  L 
Sbjct: 31  KDTTILHLSENLLYTF---SLATLMPYTRLTQLNLDRAELTKLQ----VDGTLPVLGTLD 83

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           L+  QL   P L      +L  LD+S N+   SL    L GL  L  L L  N  +   P
Sbjct: 84  LSHNQLQSLPLL-GQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 281 DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
             +     L  L L++N+ + L    LN    L+ L L  N L   I      +   +  
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPF 199

Query: 341 LDLSFN 346
             L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 24/189 (12%)

Query: 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
              ++     L   +   L ++      L LS N L      +   +  L  ++L   +L
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
           +       L +        L +LDLS+  L  SL         L  +D+S N ++     
Sbjct: 68  TK------LQVDGTLPV--LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LKANPNWVPVF---- 487
           +L  L  L+ L +  N+L  T+          L     + N+LT L A      +     
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAG-----LLNGLE 172

Query: 488 QLEELDLRS 496
            L+ L L+ 
Sbjct: 173 NLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLT-L 477
            LSEN +      +L   + L  L++   +L    +++     L  L     S N L  L
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 478 KANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQ 537
                 +P   L  LD+    L       L     L  L +  + +  T+P        +
Sbjct: 93  PLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPK 149

Query: 538 FNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLS 572
              LSL+NN +  E+P   L  +  L TL L  N+L 
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 52/281 (18%), Positives = 80/281 (28%), Gaps = 93/281 (33%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
              V+  + +++  +P  L        L +S N L  T S       + LT     R  L
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL 67

Query: 476 TLKANPNWVPVF----QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF 531
           T       + V      L  LDL              S N L            ++P   
Sbjct: 68  TK------LQVDGTLPVLGTLDL--------------SHNQLQ-----------SLPLLG 96

Query: 532 WKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSK 589
            +++     L +S N++   +P   L  + +L  L L  N    +L  L   +       
Sbjct: 97  -QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN----ELKTLPPGL------- 143

Query: 590 NKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP 649
                            T   +                      L  L L NN  T    
Sbjct: 144 ---------L-------TPTPK----------------------LEKLSLANNNLTELPA 165

Query: 650 TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
             L  L  L +L L+ N+L  T+P        L    +  N
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 49/234 (20%), Positives = 74/234 (31%), Gaps = 68/234 (29%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
           +L L  N        +L   + L  L+L    L+  L V  G    L T+D+  N+   +
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-S 91

Query: 696 VPAWIGERFPRMIILILRSNKF----HGVFPLELCHLAFLKILVLAGNNLSGTIPTCISN 751
           +P  +G+  P + +L +  N+      G        L  L+ L L GN L  T+P     
Sbjct: 92  LPL-LGQTLPALTVLDVSFNRLTSLPLGAL----RGLGELQELYLKGNELK-TLP----- 140

Query: 752 FTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNI 811
                                   PG                              L  +
Sbjct: 141 ------------------------PGLL-----------------------TPTPKLEKL 153

Query: 812 DLSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
            L+NN  + E+PA +   L  L +L L  N     IP+      LL       N
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
           T I++L +NLL        M +  L  L LD  + T KL      L +L +L L +N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQ 90

Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKF----HGVFPLEL 725
            +LP+       L  +D+  N  + ++P         +  L L+ N+      G+     
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT--- 145

Query: 726 CHLAFLKILVLAGNNLSGTIP 746
                L+ L LA NNL+  +P
Sbjct: 146 -PTPKLEKLSLANNNLT-ELP 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 27/240 (11%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL- 166
                + +  NL       +        +  ++  +           + I +L+ +Q+  
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDN--------SNIQSLAGMQFFT 63

Query: 167 NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
           NL+  +L    + DL  L DL+ LE L ++   L  ++  P        L  L L   +L
Sbjct: 64  NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNEL 118

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
                L   +  +L  L + +N+  +      L  L  L  LDL  N         +   
Sbjct: 119 RDTDSLI--HLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEITNTGG--LTRL 171

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
             +  +DL+         ++  +      +     R    IS   + N  S     + + 
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW---ISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 18/196 (9%)

Query: 154 PNQIGNLSNLQYL-NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNA 212
           P  I  +     L N     LG   V DL    +LS ++N +    ++  ++        
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG----MQF 61

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
             +L  L L+  Q+S   PL   + + L  L ++ N+    L          L  L L +
Sbjct: 62  FTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDN 115

Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
           N  +      + +  +L  L + +N    ++   L   S+LE L L  N +        L
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT-NTGG--L 168

Query: 333 ENLSSIQSLDLSFNEL 348
             L  +  +DL+  + 
Sbjct: 169 TRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 22/196 (11%)

Query: 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLN 167
           +  F +L  L+LS+N    +     L  +  L  L ++         N++ NL+ +    
Sbjct: 59  MQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNR--------NRLKNLNGIPSAC 107

Query: 168 LRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLS 227
           L   +L    + D   L  L  LE L +    L  +         L  L VL L G +++
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEIT 163

Query: 228 HFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI-PDTIQNW 286
           +   L+      +  +DL+  +  N      +     L   +   +     I P  I N 
Sbjct: 164 NTGGLT--RLKKVNWIDLTGQKCVN----EPVKYQPELYITNTVKDPDGRWISPYYISNG 217

Query: 287 TSLRHLDLSSNHFSYL 302
            S     +      Y 
Sbjct: 218 GSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 47/271 (17%)

Query: 294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIP 353
                 + + P      +     +L    +   + S   + LS +Q+ +   + ++  + 
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQ-SLA 57

Query: 354 RSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKF 413
                F NL+ + LS  Q+S       L+         LE L ++   L  +L       
Sbjct: 58  -GMQFFTNLKELHLSHNQIS------DLSPLKDLTK--LEELSVNRNRLK-NLNG--IPS 105

Query: 414 KVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEI-HFANLSSLTFFYASR 472
             L+ + L  N +       L  L +L  L I NN+L      I     LS L       
Sbjct: 106 ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL----KSIVMLGFLSKLEVLDLHG 159

Query: 473 NSLT----LKANPNWVPVFQLEELDLRSCYLGPPFPSW---LHSQNHLVNLD-------- 517
           N +T    L           +  +DL           +   L+  N + + D        
Sbjct: 160 NEITNTGGLTRLKK------VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYY 213

Query: 518 ISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
           IS+ G         W+     + +S   ++ 
Sbjct: 214 ISNGGSYVD-GCVLWELPVYTDEVSYKFSEY 243

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 19/234 (8%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
               +L   +++  L +   +   + + +   ++I       +   ++L+ L +S+NQ+ 
Sbjct: 21  AVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQI- 75

Query: 452 GTVSEI-HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
              S++    +L+ L     +RN L    N N +P   L  L L +  L       L   
Sbjct: 76  ---SDLSPLKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNEL--RDTDSLIHL 127

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
            +L  L I ++ +   +       +++   L L  N+I      LT + ++  +DL+   
Sbjct: 128 KNLEILSIRNNKLKSIVML---GFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQK 183

Query: 571 LSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI 624
              +       + + +  K+   G  +        G+ +   +  E  +   E+
Sbjct: 184 CVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVLWELPVYTDEV 236

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 38/179 (21%)

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
            + N +  +S I         +  T    L LS+NQI  ++  L ++++L  L ++ N L
Sbjct: 42  GVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRL 97

Query: 572 SGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW 631
                + ++ +  L L  N+                 L    +L              + 
Sbjct: 98  KNLNGIPSACLSRLFLDNNE-----------------LRDTDSLI-------------HL 127

Query: 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
           + L +L + NNK    +   LG LS L  L L  N ++ T    L    ++  ID+   
Sbjct: 128 KNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 53/293 (18%), Positives = 95/293 (32%), Gaps = 55/293 (18%)

Query: 107 ALLDFEHLIYLNLSYNDF--KGIQ-IPRFLGSMGNLRFLDLSGAGFVGMIPNQIG----- 158
            LL+ + +  + LS N    +  + +   + S  +L   + S   F G + ++I      
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRL 85

Query: 159 ------NLSNLQYLNLRPNYLGGLYVEDLG-WLYDLSLLENLDLSGVDLS---------- 201
                     L  + L  N  G    E L  +L   + LE+L L    L           
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 202 -KVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA----NFSSLVTLDLSHNQFDN---- 252
            +             L  +     +L +      A    +   L T+ +  N        
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 253 SLIATQLYGLCNLVFLDLSDNNFQGP-----IPDTIQNWTSLRHLDLSSN--------HF 299
            L+   L     L  LDL DN F        +   +++W +LR L L+            
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDLSFNEL 348
                +  N    L+ L L  N ++      + +V+ E +  +  L+L+ N  
Sbjct: 265 VDAFSKLENI--GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 58/345 (16%), Positives = 97/345 (28%), Gaps = 77/345 (22%)

Query: 268 LDLSDNNFQG----PIPDTIQNWTSLRHLDLSSNHFS----YLIPEWLNKFSRLEYLSLS 319
             L  +         +   +    S++ + LS N         + E +     LE    S
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 320 SNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQ 379
                GR+   + E L  +                +  +   L ++ LS           
Sbjct: 69  DIFT-GRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 380 VLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSS 439
           ++   S      LE L L N        N +G         ++       V         
Sbjct: 114 LIDFLSKHTP--LEHLYLHN--------NGLGPQAG---AKIARALQELAVNKKAKNAPP 160

Query: 440 LRYLDISNNQL-NGTVSEI--HFANLSSLTFFYASRNSLT-----------LKANPNWVP 485
           LR +    N+L NG++ E    F +   L      +N +            L        
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE--- 217

Query: 486 VFQLEELDLRSCYLGPP----FPSWLHSQNHLVNLDISDSGI--------VDTIPNRFWK 533
              L+ LDL+               L S  +L  L ++D  +        VD        
Sbjct: 218 ---LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 534 SITQFNYLSLSNNQIHGE-IPNLTEV-----SQLGTLDLSANNLS 572
            +     L L  N+I  + +  L  V       L  L+L+ N  S
Sbjct: 275 GLQ---TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 37/256 (14%)

Query: 79  ELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDF--KGIQ-IPRFLGS 135
                + +      +  E+  L+ +   ALL    L  + LS N F     + +  FL  
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQ---ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 136 MGNLRFLDLS-------GAGFVG------MIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182
              L  L L            +        +  +  N   L+ +    N L    +++  
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 183 W-LYDLSLLENLDLSGVDLSKVSNGPLVTNALR---SLLVLQLAGCQLSH--FPPLS--V 234
                  LL  + +    +       L+   L     L VL L     +H     L+  +
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 235 ANFSSLVTLDLSHNQFDN---SLIATQLYGLCN--LVFLDLSDNNFQGP----IPDTIQ- 284
            ++ +L  L L+         + +      L N  L  L L  N  +      +   I  
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300

Query: 285 NWTSLRHLDLSSNHFS 300
               L  L+L+ N FS
Sbjct: 301 KMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 57/390 (14%), Positives = 115/390 (29%), Gaps = 111/390 (28%)

Query: 337 SIQSLDLSFNELE----WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
           SI+   L  + +       +        +++ I LSG  +  +    +    +      L
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD--L 62

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452
           E  + S+           G+ K      L    +      +L K   L  + +S+N   G
Sbjct: 63  EIAEFSD--------IFTGRVKDEIPEALR--LLLQ----ALLKCPKLHTVRLSDNAF-G 107

Query: 453 TVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNH 512
             ++    +               L  +        LE L L +  LGP       +   
Sbjct: 108 PTAQEPLIDF--------------LSKHTP------LEHLYLHNNGLGP------QAGAK 141

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGE-IPNLTEV----SQLGTLDLS 567
           +         + +   N+  K+      +    N++    +    +       L T+ + 
Sbjct: 142 IA------RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195

Query: 568 ANNLS--GQLPLLA------SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNL 619
            N +   G   LL         + VLDL  N  +            G             
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT----------HLG------------- 232

Query: 620 LAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSL-----------LRSLHLRNNNL 668
            +  +     +W  L  L L++   + +     GA ++           L++L L+ N +
Sbjct: 233 -SSALAIALKSWPNLRELGLNDCLLSAR-----GAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 669 SGTLPVSLG-----NCTELETIDIGENEFS 693
                 +L         +L  +++  N FS
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 68/383 (17%), Positives = 128/383 (33%), Gaps = 78/383 (20%)

Query: 117 LNLSYNDFKGIQ-IPRFLGSMGNLRFLDLSGAGFVGMIPNQIG-------------NLSN 162
           +N       G   +  F      +  LDLS         N +                ++
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSL--------NNLYSISTVELIQAFANTPAS 52

Query: 163 LQYLNLRPNYLGGLYVEDLGWL--YDLSLLENLDLSGVDLSKVSNGPLVTNALRS----L 216
           +  LNL  N LG    ++L  +     + + +L+LSG  LS  S+  LV   L +    +
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV-KTLAAIPFTI 111

Query: 217 LVLQLAGCQLS-----HFPPLSVANFSSLVTLDLSHNQFDN---SLIATQLYGL-CNLVF 267
            VL L     S      F        +S+ +L+L  N         +   L  +  N+  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 268 LDLSDNNFQGP----IPDTIQNW-TSLRHLDLSSNHF-----SYLIPEWLNKFSRLEYLS 317
           L+L  NN        +   + +   S+  LDLS+N       + L   + +  + +  L+
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 318 LSSNRLQGRISSVL---LENLSSIQSLDLSFNELEWKIPRSFSRFC-------NLRSISL 367
           L  N L G     L    ++L  +Q++ L ++ ++                   +  +  
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 368 SGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
           +G ++               +S+++  L         SL NQ   F   +  ++ + +I 
Sbjct: 292 NGKEIHPSHSIP--------ISNLIRELSGKADVP--SLLNQCLIFAQKHQTNIEDLNIP 341

Query: 428 GQVPWSLGKLSSLRYLDISNNQL 450
                       LR    +   L
Sbjct: 342 ----------DELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 55/337 (16%), Positives = 112/337 (33%), Gaps = 52/337 (15%)

Query: 302 LIPEWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDLSFNELEWKIPRSFS 357
            + E+ +    +  L LS N L       +        +S+ SL+LS N L +K      
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 358 RF-----CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGK 412
           +       N+ S++LSG  LS++     L      +   +  LDL     S   +++  +
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131

Query: 413 F-----KVLNSVDLSENSISGQVPWSLGKL-----SSLRYLDISNNQLNGTVSEIHFANL 462
                   + S++L  N +  +    L ++     +++  L++  N L  + +    A  
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKF 190

Query: 463 -----SSLTFFYASRNSLT----------LKANPNWVPVFQLEELDLRSCYLGPP----F 503
                +S+T    S N L             + PN      +  L+L    L  P     
Sbjct: 191 LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN-----HVVSLNLCLNCLHGPSLENL 245

Query: 504 PSWLHSQNHLVNLDISDSGIVDTIPN------RFWKSITQFNYLSLSNNQIHGE-IPNLT 556
                S  HL  + +    + +            + +I +   +  +  +IH      ++
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305

Query: 557 EVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLS 593
            + +  +      +L  Q  + A          N   
Sbjct: 306 NLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 56/284 (19%)

Query: 113 HLIYLNLSYNDFK---GIQIPRFLGSM-GNLRFLDLSGAGFVGMIPNQIG---------- 158
           ++  LNLS N        ++ + L ++   +  LDL          N             
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW--------NDFSSKSSSEFKQA 132

Query: 159 ---NLSNLQYLNLRPNYLGGLYVEDLGW-LYDLSL-LENLDLSGVDLSKVSNGPLVTNAL 213
                +++  LNLR N LG    ++L   L  +   + +L+L G +L+  +    +   L
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-CAELAKFL 191

Query: 214 R----SLLVLQLAGCQLSH--FPPLSVA---NFSSLVTLDLSHNQFDNS---LIATQLYG 261
                S+  L L+   L    +  L+       + +V+L+L  N         +      
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 262 LCNLVFLDLSDNNFQGPIPDTIQNW-------TSLRHLDLSSNHFSY----LIPEWLNKF 310
           L +L  + L  +  +    +  +           +  +D +           I   + + 
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 311 S-RLEYLSLSSN----RLQGRISSVLLENLSSIQSLDLSFNELE 349
           S + +  SL +       + + +   L     ++    +   L 
Sbjct: 312 SGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 44/308 (14%), Positives = 87/308 (28%), Gaps = 66/308 (21%)

Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELD 493
                 +  LD+S N L      I    L                  P       +  L+
Sbjct: 18  TSIPHGVTSLDLSLNNL----YSISTVELIQA-----------FANTPA-----SVTSLN 57

Query: 494 LRSCYLGPP----FPSWLHSQN-HLVNLDISDSGIVDTIPNRFWKSITQFN----YLSLS 544
           L    LG          L +   ++ +L++S + +     +   K++         L L 
Sbjct: 58  LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117

Query: 545 NNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCH-- 602
            N                    S++        L +++  L+L  N L       +    
Sbjct: 118 WNDFS---------------SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162

Query: 603 ETNGTRLTQIINLEDNLL----AGEIPDCWMNW-RYLLVLRLDNNKFTGKLPTSLGAL-- 655
                 +   +NL  N L      E+     +    +  L L  N    K    L  +  
Sbjct: 163 AAIPANVNS-LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221

Query: 656 ---SLLRSLHLRNNNLSGT----LPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMI 708
              + + SL+L  N L G     L +   +   L+T+ +  +         + +   + +
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN-----MSKEQCKAL 276

Query: 709 ILILRSNK 716
                + +
Sbjct: 277 GAAFPNIQ 284

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 33/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSH 247
              E+  ++  D+ ++ + P       S   L+L    L   P  + +N  ++  + +S 
Sbjct: 11  HQEEDFRVTCKDIQRIPSLP------PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 248 NQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP-DTIQNWTSLRHLDLSSNHFSYLIPEW 306
           +     L +   Y L  +  +++ +      I  D ++    L+ L + +          
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124

Query: 307 -LNKFSRLEYLSLSSNRLQGRISSVLLENLSS-IQSLDLSFNELEWKIPRSFSRFCNLRS 364
            +        L ++ N     I     + L +   +L L  N     +         L +
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDA 183

Query: 365 ISLSGIQLSHQKVSQVLA-IFSGCVSDVLESLDLSNTTLS 403
           + L+     ++ ++ +    F G  S     LD+S T+++
Sbjct: 184 VYLNK----NKYLTVIDKDAFGGVYSG-PSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 35/210 (16%), Positives = 74/210 (35%), Gaps = 11/210 (5%)

Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQYLNLRPNY 172
              L L     + I       ++ N+  + +S    +  + +    NLS + ++ +R   
Sbjct: 33  TQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 173 LGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG-CQLSHFPP 231
              L   D   L +L LL+ L +    L    +   V +      +L++     ++  P 
Sbjct: 92  N--LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS-TDIFFILEITDNPYMTSIPV 148

Query: 232 LSVANFSS-LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI--QNWTS 288
            +     +  +TL L +N F  + +    +    L  + L+ N +   I        ++ 
Sbjct: 149 NAFQGLCNETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSL 318
              LD+S    + L  + L     L   + 
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 26/197 (13%), Positives = 69/197 (35%), Gaps = 14/197 (7%)

Query: 107 ALLDFEHLIYLNLSYND-FKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQ 164
           A  +  ++  + +S +   + ++   F   +  +  +++     +  I       L  L+
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG-VDLSKVSNGPLVTNALRSLLV-LQLA 222
           +L +    L      DL  +Y   +   L+++    ++ +         L +  + L+L 
Sbjct: 109 FLGIFNTGLK--MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLY 164

Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCN-LVFLDLSDNNFQGPIPD 281
               +        N + L  + L+ N++   +      G+ +    LD+S  +    +P 
Sbjct: 165 NNGFTSVQG-YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPS 222

Query: 282 TIQNWTSLRHLDLSSNH 298
                  L+ L   +  
Sbjct: 223 KG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 10/194 (5%)

Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
            S + L L   H   +     +    +  + +S +    ++ S    NLS +  +++   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 347 ELEWKIPRS-FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGS 405
                I          L+ + +    L       +  ++S   +D+   L++++     S
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKM--FPDLTKVYS---TDIFFILEITDNPYMTS 145

Query: 406 LTNQI--GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL- 462
           +      G      ++ L  N  +  V       + L  + ++ N+    + +  F  + 
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 463 SSLTFFYASRNSLT 476
           S  +    S+ S+T
Sbjct: 205 SGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 39/266 (14%), Positives = 89/266 (33%), Gaps = 69/266 (25%)

Query: 418 SVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477
              ++   I  ++P       S + L +    L  T+    F+NL +++  Y S +    
Sbjct: 15  DFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV--- 66

Query: 478 KANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQ 537
                      L++L+              ++ + + +++I ++  +  I     K +  
Sbjct: 67  ----------TLQQLE----------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106

Query: 538 FNYLSLSNNQIHGEIPNLTEVSQLG---TLDLSANNLSGQLPL-----LASNVMVLDLSK 589
             +L + N  +    P+LT+V        L+++ N     +P+     L +  + L L  
Sbjct: 107 LKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 590 NKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP 649
           N  +                    +++     G           L  + L+ NK+   + 
Sbjct: 166 NGFT--------------------SVQGYAFNG---------TKLDAVYLNKNKYLTVID 196

Query: 650 TSL--GALSLLRSLHLRNNNLSGTLP 673
                G  S    L +   +++  LP
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT-ALP 221

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 30/255 (11%), Positives = 68/255 (26%), Gaps = 59/255 (23%)

Query: 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPV-SLGNCTELETIDIGENEFSGN 695
           L+L           +   L  +  +++  +     L   S  N +++  I+I        
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCH-LAFLKILVLAGNNLSGTIPTCISNFTA 754
           +     +  P +  L + +        L   +      IL +  N    +IP        
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-------- 147

Query: 755 MATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLS 814
                                   F  +                            + L 
Sbjct: 148 ---------------------VNAFQGLC----------------------NETLTLKLY 164

Query: 815 NNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI--GAMALLESLDFSSNRLE---GE 869
           NN F+  +        +L ++ L+ N +   I ++   G  +    LD S   +     +
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 870 IPKNTVNLVFLSHFN 884
             ++   L+  + + 
Sbjct: 224 GLEHLKELIARNTWT 238

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
            ++L    +   PP + + +  L  +DLS+NQ    L      GL +L  L L  N    
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
                 +   SL+ L L++N  + L  +       L  LSL  N+LQ  I+      L +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRA 153

Query: 338 IQSLDLSFN 346
           IQ++ L+ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
             +  + L  N +  +     G       L  +DLS   +S+++        LRSL  L 
Sbjct: 32  ETITEIRLEQNTIKVI---PPGAFSPYKKLRRIDLSNNQISELAPD--AFQGLRSLNSLV 86

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           L G +++  P        SL  L L+ N+  N L       L NL  L L DN  Q    
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 281 DTIQNWTSLRHLDLSSNHF 299
            T     +++ + L+ N F
Sbjct: 146 GTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 22/143 (15%)

Query: 117 LNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG--------NLSNLQYLNL 168
           + L  N  K I  P        LR +DLS         NQI          L +L  L L
Sbjct: 37  IRLEQNTIKVIP-PGAFSPYKKLRRIDLSN--------NQISELAPDAFQGLRSLNSLVL 87

Query: 169 RPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSH 228
             N +  L          L  L+ L L+   ++ +         L +L +L L   +L  
Sbjct: 88  YGNKITEL---PKSLFEGLFSLQLLLLNANKINCLRVD--AFQDLHNLNLLSLYDNKLQT 142

Query: 229 FPPLSVANFSSLVTLDLSHNQFD 251
               + +   ++ T+ L+ N F 
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338
           +P+TI        + L  N    + P   + + +L  + LS+N++   ++    + L S+
Sbjct: 30  LPETITE------IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH 374
            SL L  N++       F    +L+ + L+  +++ 
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 39/157 (24%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LK 478
            L +N+I    P +      LR +D+SNNQ++  ++   F  L SL       N +T L 
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 479 ANPNWVPVF----QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
            +     +F     L+ L L              + N +             +    ++ 
Sbjct: 97  KS-----LFEGLFSLQLLLL--------------NANKIN-----------CLRVDAFQD 126

Query: 535 ITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSAN 569
           +   N LSL +N++   I     + +  + T+ L+ N
Sbjct: 127 LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 12/132 (9%)

Query: 541 LSLSNNQIHGEIPN--LTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKNKLSG 594
           + L  N I   IP    +   +L  +DLS N +S +L   A     ++  L L  NK++ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 595 SILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA 654
            +   +        L  +  L  N +     D + +   L +L L +NK       +   
Sbjct: 94  ELPKSLFEGL--FSLQLL-LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 655 LSLLRSLHLRNN 666
           L  ++++HL  N
Sbjct: 151 LRAIQTMHLAQN 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 51/211 (24%), Positives = 77/211 (36%), Gaps = 34/211 (16%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           +   LDL  N             T LR L L+ N    L      +   LE L ++ N+L
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRS-FSRFCNLRSISLSGIQLSHQKVSQVLA 382
           Q  +   + + L ++  L L  N+L+  +P   F     L  +SL   +L  Q + +   
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL--QSLPK--G 151

Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
           +F    S  L+ L L N        NQ+               +         KL+ L+ 
Sbjct: 152 VFDKLTS--LKELRLYN--------NQL-------------KRVPEGA---FDKLTELKT 185

Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRN 473
           L + NNQL   V E  F +L  L       N
Sbjct: 186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 44/190 (23%), Positives = 64/190 (33%), Gaps = 23/190 (12%)

Query: 116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------GNLSNLQYLN 167
            L+L  N    +    F   +  LR L L+         N++          L NL+ L 
Sbjct: 41  KLDLQSNKLSSLPSKAFHR-LTKLRLLYLND--------NKLQTLPAGIFKELKNLETLW 91

Query: 168 LRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLS 227
           +  N L  L    +G    L  L  L L    L  +     V ++L  L  L L   +L 
Sbjct: 92  VTDNKLQAL---PIGVFDQLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSLGYNELQ 146

Query: 228 HFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWT 287
             P       +SL  L L +NQ    +       L  L  L L +N  +        +  
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 288 SLRHLDLSSN 297
            L+ L L  N
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 7/161 (4%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY 172
            L  L L+ N  + +    F   + NL  L ++      +       L NL  L L  N 
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 173 LGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPL 232
           L  L          L+ L  L L   +L  +  G  V + L SL  L+L   QL   P  
Sbjct: 121 LKSL---PPRVFDSLTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLYNNQLKRVPEG 175

Query: 233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
           +    + L TL L +NQ    +       L  L  L L +N
Sbjct: 176 AFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 40/183 (21%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT-LK 478
           DL  N +S     +  +L+ LR L +++N+L  T+    F  L +L   + + N L  L 
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 479 ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQF 538
                  V  L EL L               +N L            ++P R + S+T+ 
Sbjct: 102 IGVFDQLV-NLAELRL--------------DRNQL-----------KSLPPRVFDSLTKL 135

Query: 539 NYLSLSNNQI----HGEIPNLTEVSQLGTLDLSANNLSGQLPLLA----SNVMVLDLSKN 590
            YLSL  N++     G    LT    L  L L  N L  ++P  A    + +  L L  N
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLT---SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

Query: 591 KLS 593
           +L 
Sbjct: 192 QLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 49/241 (20%), Positives = 80/241 (33%), Gaps = 69/241 (28%)

Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
           +  + LDL  N+L     ++F R   LR + L+  +L                       
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------------------- 74

Query: 396 DLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVS 455
            L        L N       L ++ +++N +         +L +L  L +  NQL  ++ 
Sbjct: 75  TLPAGIFKE-LKN-------LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLP 125

Query: 456 EIHFANLSSLTFFYASRNSLT-LKANPNWVPVF----QLEELDLRSCYLGPPFPSWLHSQ 510
              F +L+ LT+     N L  L        VF     L+EL L                
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKG-----VFDKLTSLKELRL--------------YN 166

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN--LTEVSQLGTLDLSA 568
           N L             +P   +  +T+   L L NNQ+   +P      + +L  L L  
Sbjct: 167 NQL-----------KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214

Query: 569 N 569
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------GNLSNLQY 165
           L  L ++ N  + +        + NL  L L          NQ+         +L+ L Y
Sbjct: 87  LETLWVTDNKLQALP-IGVFDQLVNLAELRLDR--------NQLKSLPPRVFDSLTKLTY 137

Query: 166 LNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ 225
           L+L  N L  L     G    L+ L+ L L    L +V  G    + L  L  L+L   Q
Sbjct: 138 LSLGYNELQSL---PKGVFDKLTSLKELRLYNNQLKRVPEG--AFDKLTELKTLKLDNNQ 192

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFD 251
           L   P  +  +   L  L L  N +D
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQENPWD 218

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 70/449 (15%), Positives = 131/449 (29%), Gaps = 53/449 (11%)

Query: 117 LNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG-NLSNLQYLNLRPNYLGG 175
           +   +  +    I     S   L  + L            I  +  N + L L       
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS----SC 140

Query: 176 LYVEDLGWLY---DLSLLENLDLSGVDLSKVSNGPL--VTNALRSLLVLQLAGCQ----- 225
                 G          L+ LDL   D+  VS   L    +   SL+ L ++        
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200

Query: 226 --LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS------DNNFQG 277
             L       V    +L +L L+       L    L     L  L           +   
Sbjct: 201 SALERL----VTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
            +   +     LR L    +     +P   +  SRL  L+LS   +Q      LL     
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315

Query: 338 IQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQ------VLAIFSGCVSDV 391
           +Q L +     +  +    S   +LR + +   +    + +       ++++  GC    
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK-- 373

Query: 392 LESLDLSNTTLSGSLTNQIGK-FKVLNSVDLSENSISGQVPWSLG-----------KLSS 439
           LES+      ++ +    I +    +    L           +L                
Sbjct: 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433

Query: 440 LRYLDISNNQLNGTVSEI--HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSC 497
           LR L +S    +     I  +   +  L+  +A  + L +    +      L +L++R C
Sbjct: 434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD--SLRKLEIRDC 491

Query: 498 YLG-PPFPSWLHSQNHLVNLDISDSGIVD 525
             G     +       + +L +S   +  
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVSF 520

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 70/523 (13%), Positives = 160/523 (30%), Gaps = 65/523 (12%)

Query: 90  HGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGF 149
              + + S +LV K   +  + E      +   +   +     +     +R ++L G   
Sbjct: 22  QLDKDRNSVSLVCK---SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPH 78

Query: 150 VGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLV 209
                          Y  +                   + LE + L  + ++      + 
Sbjct: 79  FADFNLVPDGWGGYVYPWIE------------AMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 210 TNALRSLLVLQLAGC-QLSHFPPLSVA-NFSSLVTLDLSHNQFDN---SLIATQLYGLCN 264
            +  ++  VL L+ C   S     ++A    +L  LDL  +  D+     ++       +
Sbjct: 127 KS-FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 265 LVFLDLSDNNFQGPIPDT-----IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
           LV L++S       +  +     +    +L+ L L+       +   L +  +LE L   
Sbjct: 186 LVSLNIS--CLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 320 SNRLQGRIS-----SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH 374
               + R       SV L     ++ L   ++ +   +P  +S    L +++LS   +  
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 375 QKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS---------ENS 425
                ++ +   C    L+ L + +      L       K L  + +            +
Sbjct: 304 ---YDLVKLLCQCPK--LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358

Query: 426 ISGQVPWSLGK-LSSLRYLDISNNQL-NGTVSEI--HFANLSSLTFFYASRNSLT----- 476
           ++ Q   S+      L  +     Q+ N  +  I  +  N++          +       
Sbjct: 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418

Query: 477 -----LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF 531
                  A         L  L L        F         +  L ++ +G  D   +  
Sbjct: 419 PLDIGFGAIVEHCK--DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476

Query: 532 WKSITQFNYLSLSNNQI--HGEIPNLTEVSQLGTLDLSANNLS 572
                    L + +        + N +++  + +L +S+ ++S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 60/401 (14%), Positives = 120/401 (29%), Gaps = 39/401 (9%)

Query: 111 FEHLIYLNLSY-NDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLS----NLQY 165
           F++   L LS    F    +     +  NL+ LDL  +    +  + + +      +L  
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 166 LNLRPNYLGGLYVEDLGWL-YDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           LN+       +    L  L      L++L L+      +     +      L  L   G 
Sbjct: 189 LNIS-CLASEVSFSALERLVTRCPNLKSLKLNR--AVPLEKLATLLQRAPQLEELGTGGY 245

Query: 225 ------QLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC-NLVFLDLSDNNFQG 277
                  +     ++++    L  L    +     L A  +Y +C  L  L+LS    Q 
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--VYSVCSRLTTLNLSYATVQS 303

Query: 278 P-IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSV------ 330
             +   +     L+ L +        +    +    L  L +  +       +V      
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 331 ---LLENLSSIQSLDLSFNELEWKIPRSFSRFC-NLRSISLSGIQLSHQKVSQ------- 379
              +      ++S+     ++      + +R   N+    L  I+               
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 380 VLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGK-LS 438
             AI   C    L  L LS               K +  + ++    S      +     
Sbjct: 424 FGAIVEHCKD--LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481

Query: 439 SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKA 479
           SLR L+I +          + + L ++   + S  S++  A
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 43/305 (14%), Positives = 90/305 (29%), Gaps = 40/305 (13%)

Query: 129 IPRFLGSMGNLRFLDLSGAGFVGM-IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL 187
           +P        L  L+LS A      +   +     LQ L +         +ED G     
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY------IEDAGLEVLA 334

Query: 188 SL---LENLDLSGVDLSKVSNGPLVTN-ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTL 243
           S    L  L +   +   +     +T   L S+                       L ++
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-----------------SMGCPKLESV 377

Query: 244 DLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ-----------NWTSLRHL 292
                Q  N+ + T      N+    L     + P   T++           +   LR L
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

Query: 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI 352
            LS      +         ++E LS++           +L    S++ L++       K 
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497

Query: 353 PRSFSRFC-NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIG 411
             + +     +RS+ +S   +S      +         +V++     ++        ++ 
Sbjct: 498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVF 557

Query: 412 KFKVL 416
            ++ +
Sbjct: 558 IYRTV 562

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 218 VLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
            L+L   + +      +      L  ++ S+N+    +      G   +  + L+ N  +
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
                  +   SL+ L L SN  + +  +     S +  LSL  N++   ++    + L 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 337 SIQSLDLSFN 346
           S+ +L+L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQF 250
             L L+  + + +    +    L  L  +  +  +++     +    S +  + L+ N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKK-LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 251 DNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310
           + ++      GL +L  L L  N       D+    +S+R L L  N  + + P   +  
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 311 SRLEYLSLSSN 321
             L  L+L +N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
                L L  N    L  E  G    L  L  ++ S   ++ +  G         +  + 
Sbjct: 32  QYTAELRLNNNEFTVL--EATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGVNEIL 87

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           L   +L +          SL TL L  N+    +      GL ++  L L DN      P
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 281 DTIQNWTSLRHLDLSSNHF 299
                  SL  L+L +N F
Sbjct: 147 GAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 117 LNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN--------LSNLQYLNL 168
           L L+ N+F  ++       +  LR ++ S         N+I +         S +  + L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSN--------NKITDIEEGAFEGASGVNEILL 88

Query: 169 RPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSH 228
             N L  +          L  L+ L L    ++ V N       L S+ +L L   Q++ 
Sbjct: 89  TSNRLENV---QHKMFKGLESLKTLMLRSNRITCVGND--SFIGLSSVRLLSLYDNQITT 143

Query: 229 FPPLSVANFSSLVTLDLSHNQFD 251
             P +     SL TL+L  N F+
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 42/170 (24%)

Query: 314 EYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
             L L++N      ++ + + L  ++ ++ S N++      +F     +  I L+  +L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 374 --HQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP 431
               K+      F G  S  L++L L +        N+I               +     
Sbjct: 95  NVQHKM------FKGLES--LKTLMLRS--------NRI-------------TCVG---N 122

Query: 432 WSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANP 481
            S   LSS+R L + +NQ+  TV+   F  L SL+       +L L ANP
Sbjct: 123 DSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLS-------TLNLLANP 164

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           + L+    +    A Q         LDL        I +          +D S N    L
Sbjct: 2   VKLTAELIEQ---AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL 57

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL-EWKIPRSFSRFCN 361
             +      RL+ L +++NR+  RI   L + L  +  L L+ N L E       +   +
Sbjct: 58  --DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 362 LRSISLSG 369
           L  + +  
Sbjct: 115 LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 156 QIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRS 215
           Q  N    + L+LR   +    +E+LG    L   + +D S  ++ K+   PL    LR 
Sbjct: 14  QYTNAVRDRELDLRGYKIP--VIENLG--ATLDQFDAIDFSDNEIRKLDGFPL----LRR 65

Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
           L  L +   ++             L  L L++N          L  L +L +L +  N
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW---TSLRHL 292
           N      LDL   +    +I      L     +D SDN  +      +  +     L+ L
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTL 69

Query: 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL-LENLSSIQSLDLSFNEL 348
            +++N    +          L  L L++N L   +  +  L +L S+  L +  N +
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNT 400
           + L+   +E +    ++     R + L G      K+  +  + +       +++D S+ 
Sbjct: 2   VKLTAELIE-QAA-QYTNAVRDRELDLRG-----YKIPVIENLGATLDQ--FDAIDFSDN 52

Query: 401 TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFA 460
            +   L       + L ++ ++ N I          L  L  L ++NN L         A
Sbjct: 53  EIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 461 NLSSLTFFYASRNSLTLKAN 480
           +L SLT+    RN +T K +
Sbjct: 111 SLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
                 +DL   K    I      L +  +++ S N    ++ +    +  L++L  ++N
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 865 RLEGEIPKNTVNLVFLSHFNISYNNLS 891
           R+          L  L+   ++ N+L 
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
            +    ++ S N+ + +        +  L+ L ++      +       L +L  L L  
Sbjct: 41  LDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSG 197
           N L  L   DL  L  L  L  L +  
Sbjct: 98  NSLVEL--GDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDL 566
             +      LD+    I   I N    ++ QF+ +  S+N+I  ++     + +L TL +
Sbjct: 15  YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLV 71

Query: 567 SANNLSGQLPLLAS---NVMVLDLSKNKLS 593
           + N +      L     ++  L L+ N L 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS-- 693
           +++L                   R L LR   +   +        + + ID  +NE    
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL 57

Query: 694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
              P        R+  L++ +N+   +       L  L  L+L  N+L 
Sbjct: 58  DGFP-----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW---TSLRHLDLSS 296
            V L       +   +   L  L     L LS NN +      I +     +LR L L  
Sbjct: 27  KVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGR 79

Query: 297 NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL-EWKIPRS 355
           N     I         LE L +S N++   +S   +E L +++ L +S N++  W     
Sbjct: 80  NLIKK-IENLDAVADTLEELWISYNQIA-SLSG--IEKLVNLRVLYMSNNKITNWGEIDK 135

Query: 356 FSRFCNLRSISLSG 369
            +    L  + L+G
Sbjct: 136 LAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 36/171 (21%)

Query: 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSN 162
           +    +      + L+      + +     L ++   + L LS         N I  +S+
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDAT--LSTLKACKHLALST--------NNIEKISS 65

Query: 163 LQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLA 222
           L                       +  L  L L    + K+ N   V + L     L ++
Sbjct: 66  LS---------------------GMENLRILSLGRNLIKKIENLDAVADTLE---ELWIS 101

Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
             Q++    +      +L  L +S+N+  N     +L  L  L  L L+ N
Sbjct: 102 YNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 65/202 (32%)

Query: 284 QNWTSLRHLDLSSNHFSYL--IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
              T    ++L       +  +   L+     ++L+LS+N ++ +ISS  L  + +++ L
Sbjct: 20  VVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRIL 75

Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTT 401
            L  N ++                 +  +                 V+D LE L +S   
Sbjct: 76  SLGRNLIK----------------KIENLD---------------AVADTLEELWISY-- 102

Query: 402 LSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEI-HFA 460
                 NQI              S+SG     + KL +LR L +SNN++     EI   A
Sbjct: 103 ------NQI-------------ASLSG-----IEKLVNLRVLYMSNNKIT-NWGEIDKLA 137

Query: 461 NLSSLTFFYASRNSLTLKANPN 482
            L  L     + N L      N
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKEN 159

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 9e-11
 Identities = 53/444 (11%), Positives = 126/444 (28%), Gaps = 60/444 (13%)

Query: 107 ALLDFEHLIYLNLSY-NDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG----NLS 161
           A    + L  L L   + F    +   +     ++ L +  + F       +     + +
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 162 NLQYLNLRPNYLGGLYVEDLGWL-YDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
           +L+ LN        +  +DL  +  +   L ++ +   ++ ++         L       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP-I 279
           L          +++     L  L LS+     + +         +  LDL     +    
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSY--MGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 280 PDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS-------NRLQGRISSV-- 330
              IQ   +L  L+  +      +        +L+ L +            +G +S    
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 331 --LLENLSSIQSLDLSFNELEWKIPRSFSRFC-NLRSISLSGIQLSHQKVSQVL-----A 382
             L +    ++ + +  +++  +   S   +  NL    L  +    +     L     +
Sbjct: 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQ----IGKF-KVLNSVDLSENSISGQVPWSLGK- 436
           +  GC    L           G LT+     IG++   +  + L     S +      + 
Sbjct: 431 LLIGCKK--LRRFAFYL--RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486

Query: 437 LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRS 496
             +L+ L++     +          L SL                          L ++ 
Sbjct: 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSL------------------------RYLWVQG 522

Query: 497 CYLGPPFPSWLHSQNHLVNLDISD 520
                     +       N+++  
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIP 546

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 74/520 (14%), Positives = 143/520 (27%), Gaps = 79/520 (15%)

Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQ--FDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
               +  P      F +L +L L         +LI     G       ++S         
Sbjct: 58  ALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS--------- 108

Query: 281 DTIQNWTSLRHLDLSSNHFS--YLIPEWLNKFSRLEYLSLSSNRLQGRISSV----LLEN 334
               N   L+ +       S   L      +   LE L L         ++     ++ +
Sbjct: 109 ---NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTH 162

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFC----NLRSISLSGIQLSHQKVSQVLAIFSGCVSD 390
              I++L +  +    K  +          +L  ++    + +      +  I   C S 
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS- 221

Query: 391 VLESLDLSNTTLS--GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNN 448
            L S+ + +  +             +      L+E+    +   +L     L  L +S  
Sbjct: 222 -LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 449 QLNGTVSEIHFA-NLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL 507
             N       FA  +  L   YA   +          P   LE L+ R+           
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP--NLEVLETRNV---------- 328

Query: 508 HSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSN-NQIHGEIPNLTEVSQLGTLDL 566
                     I D G+         +   Q   L +       G       VSQ G + L
Sbjct: 329 ----------IGDRGLE-----VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 567 SANNLSGQLPLLASNVMVLDLSKNKLS-GSILHFVCHETNGTRL-----TQIINLEDNLL 620
           +          L      + +  + ++  S+     +  N          +   + D  L
Sbjct: 374 AQG-----CQELEY----MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 621 AGEIPDCWMNWRYL--LVLRLDNNKFTGKLPTSLGAL-SLLRSLHLRNNNLSGT-LPVSL 676
              +    +  + L      L     T    + +G     +R + L     S   L    
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484

Query: 677 GNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNK 716
             C  L+ +++    FS    A    + P +  L ++  +
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 39/286 (13%), Positives = 80/286 (27%), Gaps = 45/286 (15%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSG----AGFVGMIPNQIGNLSNLQYLNL 168
            +  L+L Y   +       +    NL  L+        G   +          L+ L +
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY----CKQLKRLRI 349

Query: 169 RPNYLGGLYVEDLGWLYDLSL---------LENLDLSGVDLSKVSNGPLVTNALRSLLVL 219
                     ++ G +    L         LE + +   D++  S   + T  L++L   
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY-LKNLCDF 408

Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI 279
           +L                       ++    DN + +  L G   L             +
Sbjct: 409 RLVLLDREE---------------RITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGG--L 450

Query: 280 PDTI-----QNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLE 333
            D       Q   ++R + L     S   + E+      L+ L +       R  +  + 
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510

Query: 334 NLSSIQSLDLSFNELEWKIPRSFSR---FCNLRSISLSGIQLSHQK 376
            L S++ L +                  + N+  I    +   +Q+
Sbjct: 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 9e-11
 Identities = 102/725 (14%), Positives = 210/725 (28%), Gaps = 251/725 (34%)

Query: 291 HLDLSSN--HFSY--LIPEWLNKFSR-------------------LEYLSLSSNRLQG-- 325
           H+D  +    + Y  ++  + + F                     ++++ +S + + G  
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 326 RISSVLLENLSSI------QSLDLSFNEL------EWKIP-RSFSRFCNLRSISLSGIQ- 371
           R+   LL     +      + L +++  L      E + P      +   R    +  Q 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 372 LSHQKVS---QVLAIFSGCVSDVLESL-DLSNTTLSG-------SLTNQIGKFKVLNSVD 420
            +   VS     L +        L  L    N  + G        +        V  S  
Sbjct: 126 FAKYNVSRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGKTWVALD-----VCLSYK 175

Query: 421 LSENSISGQVPW-SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKA 479
           + +  +  ++ W +L   +S   +     +L   +      N +S      S +S  +K 
Sbjct: 176 V-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP----NWTSR-----SDHSSNIKL 225

Query: 480 NPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT--------IPNRF 531
             + +      + +LR      P+ + L     LV L++ ++   +         +  RF
Sbjct: 226 RIHSI------QAELRRLLKSKPYENCL-----LVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 532 WKSITQF------NYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS---GQLPLLASNV 582
            K +T F       ++SL ++        LT   +     L    L      LP      
Sbjct: 275 -KQVTDFLSAATTTHISLDHHS-----MTLTP-DE--VKSLLLKYLDCRPQDLPREVLTT 325

Query: 583 MVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNN 642
               LS   +    +                         +    W NW+++     + +
Sbjct: 326 NPRRLS---IIAESIR------------------------DGLATWDNWKHV-----NCD 353

Query: 643 KFTGKLPTSLGALS--LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPA-- 698
           K T  + +SL  L     R +    + LS   P S                   ++P   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMF---DRLS-VFPPSA------------------HIPTIL 391

Query: 699 ----WIG--ERFPRMII-------LILRSNK-----FHGVFPLELCHLAFLKIL------ 734
               W    +    +++       L+ +  K        ++      L     L      
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 735 ---VLAGNNLSGTIPTCISNFTAMATFLGSDSIY---TIQYPSDFS-FPGKFFNITEQFV 787
              +    +    IP  +  +    + +G    +    I++P   + F   F +   +F+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQY--FYSHIG----HHLKNIEHPERMTLFRMVFLDF--RFL 503

Query: 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847
           E+++                  +   + N     +      L++L+       F+   I 
Sbjct: 504 EQKIR-----------------HDSTAWNASGSILN----TLQQLK-------FYKPYIC 535

Query: 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSS 907
           +N          D    RL   I      L FL    I  N +  +  D  + A      
Sbjct: 536 DN----------DPKYERLVNAI------LDFL--PKIEENLICSKYTDLLRIALMAEDE 577

Query: 908 YIGDE 912
            I +E
Sbjct: 578 AIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 8e-09
 Identities = 92/701 (13%), Positives = 194/701 (27%), Gaps = 192/701 (27%)

Query: 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGF----VGMIPNQIGNLSNLQ 164
           +DFE        Y D   +    F+ +       D+  +      +  I      +S   
Sbjct: 7   MDFE-TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 165 YL---------NLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRS 215
            L          +   ++  +   +  +L      E    S +    +     + N  + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTL-----DLSHNQFDNSLIATQLYGL--CN---L 265
                        F   +V+     + L     +L   +     +   + G+       +
Sbjct: 126 -------------FAKYNVSRLQPYLKLRQALLELRPAKN----VL--IDGVLGSGKTWV 166

Query: 266 VFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
                     Q  +   I  W +L++ +          PE     + LE L     +L  
Sbjct: 167 ALDVCLSYKVQCKMDFKIF-WLNLKNCN---------SPE-----TVLEML----QKLLY 207

Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS 385
           +I            ++ L  + ++ ++     R             L  +     L +  
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAEL----RRL------------LKSKPYENCLLVLL 251

Query: 386 GCVSD--VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSL--- 440
             V +     + +LS   L    T        L++   +  S+      +L         
Sbjct: 252 N-VQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLL 307

Query: 441 -RYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANP----NWVPVF-------- 487
            +YLD     L     E+   N   L+    S     ++       NW  V         
Sbjct: 308 LKYLDCRPQDLP---REVLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCDKLTTII 359

Query: 488 -----QLEELDLRSCY--LGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNY 540
                 LE  + R  +  L   FP          +  I    +        W  + + + 
Sbjct: 360 ESSLNVLEPAEYRKMFDRLS-VFPP---------SAHIPTILLS-----LIWFDVIKSDV 404

Query: 541 LSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFV 600
           + +           + ++ +   ++      +  +P +      L+L     +   LH  
Sbjct: 405 MVV-----------VNKLHKYSLVEKQPKESTISIPSIY-----LELKVKLENEYALH-- 446

Query: 601 CHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDN--NKFTG---KLPTSLGAL 655
                      I++         IP  + +   L+   LD       G   K       +
Sbjct: 447 ---------RSIVD------HYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 656 SLLRSLHL---------RNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPR 706
           +L R + L         R+++ +     S+ N   L+ +   +     N P     ++ R
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILN--TLQQLKFYKPYICDNDP-----KYER 543

Query: 707 MIILILRSNKFHGVFPLE--LCHLAFLKILVLAGNNLSGTI 745
           ++  IL    F  +  +E  L    +  +L +A       I
Sbjct: 544 LVNAIL---DF--LPKIEENLICSKYTDLLRIALMAEDEAI 579

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 5e-10
 Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 17/246 (6%)

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
               ++Q           G  +     L  +  +    D       L   +LS    S +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK-STV 363

Query: 303 IPEWLNKFSRLEYLSLSSN--RLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFC 360
           +   L     L+ L   +    L   +    L+ L   +     F+ L+   P   +   
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423

Query: 361 NLRSISLSGIQLSHQKV--SQVLAIFSGCVSDV--------LESLDLSNTTLSGSLTNQI 410
           +LRS  L    +   +    +VL +    ++ +        +  LDLS+  L  +L   +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 411 GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYA 470
              + L  +  S+N++   V   +  L  L+ L + NN+L  + +     +   L     
Sbjct: 483 AALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 471 SRNSLT 476
             NSL 
Sbjct: 541 QGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 9e-08
 Identities = 49/316 (15%), Positives = 98/316 (31%), Gaps = 20/316 (6%)

Query: 581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD 640
             + +   +  LS      +   +    L  +++     +    PD      ++ +  L 
Sbjct: 246 CCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP 305

Query: 641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWI 700
                 +LP     +    S   +   L    P               E  F   +    
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-----CRDSATDEQLFRCELSVEK 360

Query: 701 GERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLG 760
                  +           +  LE  +   L  ++L    L   +          +T   
Sbjct: 361 STVLQSEL------ESCKELQELEPENKWCLLTIILLMRALD-PLLYEKETLQYFSTLKA 413

Query: 761 SDSIYTIQYPSDFSFPGKFFNITE-QFVEEELITLEGKTLT---FKAVLRLLTNIDLSNN 816
            D +         S      ++ + ++ +  ++ L  K LT       L L+T++DLS+N
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN 473

Query: 817 KFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG-EIPKNTV 875
           +    +P  +  LR L  L  S N     +   +  +  L+ L   +NRL+     +  V
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 876 NLVFLSHFNISYNNLS 891
           +   L   N+  N+L 
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 50/317 (15%), Positives = 87/317 (27%), Gaps = 38/317 (11%)

Query: 333 ENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392
           E    +  + +S  E    +  S       R  +L  +        +            +
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSL----GKLSSLRYLDISNN 448
              DL   +L+  L     +     S    E  +    P            L   ++S  
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE 359

Query: 449 QLNGTVSEI-HFANLSSL---------TFFYASRNSLTLKANPNWVPVFQ-LEELD---- 493
           +     SE+     L  L         T     R    L      +  F  L+ +D    
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 494 ----LRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
                                  +  L ++   +   + +   + +    +L LS+N++ 
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHL--EQLLLVTHLDLSHNRLR 476

Query: 550 GEIPNLTEVSQLGTLDLSANNLS-----GQLPLLASNVMVLDLSKNKLSGSILHFVCHET 604
              P L  +  L  L  S N L        LP L      L L  N+L       +    
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDGVANLPRL----QELLLCNNRLQQ--SAAIQPLV 530

Query: 605 NGTRLTQIINLEDNLLA 621
           +  RL   +NL+ N L 
Sbjct: 531 SCPRLVL-LNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 91  GHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFV 150
            +     S  + + +   +++  +  L+L++ D   + +   L  +  +  LDLS     
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD---LTVLCHLEQLLLVTHLDLSHNRLR 476

Query: 151 GMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVT 210
             +P  +  L  L+ L    N L     E++  + +L  L+ L L    L + +    + 
Sbjct: 477 A-LPPALAALRCLEVLQASDNAL-----ENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 211 NALRSLLVLQLAGCQLSHFPPL 232
           +    L++L L G  L     +
Sbjct: 531 S-CPRLVLLNLQGNSLCQEEGI 551

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLV 218
             + ++ L L         +E L    +   LE L L  V L  VSN P     L  L  
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLISVSNLP----KLPKLKK 75

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
           L+L+  ++     +      +L  L+LS N+  +      L  L  L  LDL + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 232 LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRH 291
           L     +++  L L + + ++  I        NL FL L +          +     L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKK 75

Query: 292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL-LENLSSIQSLDLSFNEL 348
           L+LS N     +     K   L +L+LS N+L+  IS++  L+ L  ++SLDL   E+
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           LVL            L  A F +L  L L +    +    + L  L  L  L+LS+N   
Sbjct: 29  LVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIF 84

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRIS--SVLLE 333
           G +    +   +L HL+LS N    +   E L K   L+ L L +  +         + +
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 334 NLSSIQSLD 342
            L  +  LD
Sbjct: 145 LLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLN 417
               +R + L   + +  K+  + A F       LE L L N  L  S++N + K   L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEF-----VNLEFLSLINVGLI-SVSN-LPKLPKLK 74

Query: 418 SVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477
            ++LSEN I G +     KL +L +L++S N+L    +      L  L        SL L
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK-------SLDL 127

Query: 478 KANP 481
               
Sbjct: 128 FNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 284 QNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
           +   ++R L L +   +   I     +F  LE+LSL +  L   +S+  L  L  ++ L+
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN--LPKLPKLKKLE 77

Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399
           LS N +   +     +  NL  ++LSG +L      + L          L+SLDL N
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC-----LKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 102 GKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLS 161
           GKI     +F +L +L+L       +     L  +  L+ L+LS     G +      L 
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 162 NLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           NL +LNL  N L  +    L  L  L  L++LDL  
Sbjct: 96  NLTHLNLSGNKLKDI--STLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 789 EELITLEGKTLTFKAVLRLLTNIDLSNNKFS-GEIPAEITVLRELRSLNLSHNFFSGRIP 847
           +  I LE +  T  A    +  + L N K + G+I         L  L+L +      + 
Sbjct: 11  KRRIHLELRNRTPAA----VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV- 64

Query: 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
            N+  +  L+ L+ S NR+ G +      L  L+H N+S N L 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
           +  L + +    D              +LSL N  +   + NL ++ +L  L+LS N + 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIF 84

Query: 573 GQLPLLASNV---MVLDLSKNKLS 593
           G L +LA  +     L+LS NKL 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLK 108

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLV 218
             S+++ L L  +      +E L    +   LE L    V L+ ++N P     L  L  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSIANLP----KLNKLKK 68

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
           L+L+  ++S    +      +L  L+LS N+  +      L  L NL  LDL + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 28/139 (20%)

Query: 232 LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRH 291
           L     S +  L L +++ +   +         L FL   +         +I N      
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIAN------ 59

Query: 292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL-EW 350
                          L K ++L+ L LS NR+      VL E   ++  L+LS N++ + 
Sbjct: 60  ---------------LPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 351 KIPRSFSRFCNLRSISLSG 369
                  +  NL+S+ L  
Sbjct: 104 STIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLN 417
              +++ + L   + +  K+  +   F     + LE L   N  L+ S+ N + K   L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEF-----EELEFLSTINVGLT-SIAN-LPKLNKLK 67

Query: 418 SVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477
            ++LS+N +SG +     K  +L +L++S N++    +      L +L        SL L
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK-------SLDL 120

Query: 478 KANP 481
               
Sbjct: 121 FNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           LVL  +         L+   F  L  L   +    +      L  L  L  L+LSDN   
Sbjct: 22  LVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVS 77

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSN 321
           G +    +   +L HL+LS N    L   E L K   L+ L L + 
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 284 QNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
           +  + ++ L L ++  +   +    ++F  LE+LS  +  L   I++  L  L+ ++ L+
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN--LPKLNKLKKLE 70

Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399
           LS N +   +     +  NL  ++LSG ++      + L          L+SLDL N
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN-----LKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 102 GKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLS 161
           GK+     +FE L +L+        I     L  +  L+ L+LS     G +        
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 162 NLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           NL +LNL  N +  L    +  L  L  L++LDL  
Sbjct: 89  NLTHLNLSGNKIKDL--STIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 789 EELITLEGKTLTFKAVLRLLTNIDLSNNKFS-GEIPAEITVLRELRSLNLSHNFFSGRIP 847
              I LE +  T       +  + L N++ + G++        EL  L+  +   +  I 
Sbjct: 4   GRRIHLELRNRTPSD----VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI- 57

Query: 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891
            N+  +  L+ L+ S NR+ G +         L+H N+S N + 
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 533 KSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLAS---NVMVLDLSK 589
               +  +LS  N  +   I NL ++++L  L+LS N +SG L +LA    N+  L+LS 
Sbjct: 39  DEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 590 NKLS 593
           NK+ 
Sbjct: 98  NKIK 101

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 45/313 (14%), Positives = 89/313 (28%), Gaps = 56/313 (17%)

Query: 160 LSNLQYLNLRPNYLGGLYVEDL--GWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLL 217
           LS+L+ LNL    +  +    +          L+ ++L+   L       L+        
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRAR 129

Query: 218 VLQLAGCQLS--HFPPLSVA---NFSSLVTLDLSHNQFDNS---LIATQLYGLCNLVFLD 269
            L L    L       L      +   + TL LS+N    +   ++   L G  ++  L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 270 LSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFSY----LIPEWLNKFSRLEYLSLSSN 321
           L            +   +     L+ L+++ N         +     +   LE L L  N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 322 RLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVL 381
            L      VL +   + +                      +      G  +S        
Sbjct: 250 ELSSEGRQVLRDLGGAAEGG------------------ARVVVSLTEGTAVSEY------ 285

Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL---- 437
                 V  +L  +  +  +   +   +  +  +    DL ++  +   PW   +L    
Sbjct: 286 ----WSV--ILSEVQRNLNSWDRARVQRHLELLLR---DLEDSRGATLNPWRKAQLLRVE 336

Query: 438 SSLRYLDISNNQL 450
             +R L       
Sbjct: 337 GEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 66/290 (22%)

Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
           SSL  L+L+  +               +  + L                 +L  ++L+S 
Sbjct: 72  SSLRQLNLAGVRMTPV-------KCTVVAAV-LGSGR------------HALDEVNLASC 111

Query: 298 HFS-----YLIPEWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDLSFNEL 348
                    L+P     F R   L L  N L       +  +LL +   I +L LS N L
Sbjct: 112 QLDPAGLRTLLPV----FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167

Query: 349 EWK----IPRSFSRFCNLRSISLSGIQLSH---QKVSQVLAIFSGCVSDVLESLDLSNTT 401
                  +    +   ++  +SL    L     + ++  L       +  L+ L+++   
Sbjct: 168 TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-----RNRQLQELNVAYNG 222

Query: 402 LSGS----LTNQIGKFKVLNSVDLSENSIS-------GQVPWSLGKLSSLRYLDISNNQL 450
              +    L     +   L  + L  N +S         +  +    + +         +
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

Query: 451 NGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLG 500
           +   S I      +L  +  +R    L          +L   DL      
Sbjct: 283 SEYWSVILSEVQRNLNSWDRARVQRHL----------ELLLRDLEDSRGA 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 48/330 (14%), Positives = 80/330 (24%), Gaps = 110/330 (33%)

Query: 112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG------------- 158
             L  +NL+        +   L      R L L          N +G             
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL--------NSLGPEACKDLRDLLLH 152

Query: 159 NLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLV 218
           +   +  L L  N L                          L +     L  N       
Sbjct: 153 DQCQITTLRLSNNPLT-------------------AAGVAVLMEG----LAGN------- 182

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNS---LIATQLYGLCNLVFLDLSDNNF 275
                              +S+  L L H    +    L+A QL     L  L+++ N  
Sbjct: 183 -------------------TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

Query: 276 QGP----IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF-------SRLEYLSLSSNRLQ 324
                  +    +   SL  L L  N  S    + L          +R+         + 
Sbjct: 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

Query: 325 GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSH---QKVSQVL 381
              S +L E   ++ S D +  +          R   L    L   + +     + +Q+L
Sbjct: 284 EYWSVILSEVQRNLNSWDRARVQ----------RHLELLLRDLEDSRGATLNPWRKAQLL 333

Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIG 411
                 V   + +L               G
Sbjct: 334 R-----VEGEVRALLEQL--------GSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 48/364 (13%), Positives = 90/364 (24%), Gaps = 88/364 (24%)

Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
           I+N  +L +          L  + L     L+         Q +      E LSS++ L+
Sbjct: 22  IKNLDALENAQAIKKKLGKLGRQVLPPSELLD-HLFFHYEFQNQ--RFSAEVLSSLRQLN 78

Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
           L+                    ++     +    V+ VL          L+ ++L++  L
Sbjct: 79  LAGV-----------------RMTPVKCTV----VAAVLGSGRHA----LDEVNLASCQL 113

Query: 403 SGSLTNQIGK-FKVLNSVDLSENSISGQVPWSLGKL-----SSLRYLDISNNQLNGTVSE 456
             +    +   F     + L  NS+  +    L  L       +  L +SNN L      
Sbjct: 114 DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGV 172

Query: 457 IHFANL----SSLTFFYASRNSLT----------LKANPNWVPVFQLEELDLRSCYLGPP 502
                     +S+T        L           L  N        L+EL++     G  
Sbjct: 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ------LQELNVAYNGAGDT 226

Query: 503 ----FPSWLHSQNHLVNLDISDSGIVDT------IPNRFWKSITQFNYLSLSNNQI---- 548
                         L  L +  + +               +   +          +    
Sbjct: 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286

Query: 549 ------------HGEIPNLTEVSQLGTLDLSANNLSGQ-----LPLLASN--VMVLDLSK 589
                         +   +    +L   DL  +  +         LL     V  L    
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346

Query: 590 NKLS 593
               
Sbjct: 347 GSSG 350

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 56/282 (19%), Positives = 105/282 (37%), Gaps = 39/282 (13%)

Query: 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242
              D SL + LDL+G +L     G L++  + +    +         P     +   +  
Sbjct: 42  LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQH 97

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           +DLS++  + S +   L     L  L L       PI +T+   ++L  L+LS       
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---- 153

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL--EWKIPRSFSRFC 360
                           S   LQ      LL + S +  L+LS+     E  +  + +   
Sbjct: 154 --------------GFSEFALQ-----TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194

Query: 361 -NLRSISLSGIQLSHQKVSQ--VLAIFSGCVSDVLESLDLSN-TTLSGSLTNQIGKFKVL 416
             +  ++LSG     + + +  +  +   C +  L  LDLS+   L      +  +   L
Sbjct: 195 ETITQLNLSGY---RKNLQKSDLSTLVRRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYL 249

Query: 417 NSVDLSE-NSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEI 457
             + LS    I  +    LG++ +L+ L +     +GT+  +
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 33/257 (12%)

Query: 62  CCKWAGVICDNFTGHVLELHLGNPWEDDHGH-------QAKESSALVGKINPALLDFEHL 114
           C +W  +  D      L+L   N   D  G          +   + + +          +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 115 IYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLG 174
            +++LS +  +   +   L     L+ L L G      I N +   SNL  LNL      
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS--GCS 153

Query: 175 GLYVEDLGWLYD-LSLLENLDLSG-VDLSKVSNGPLVTNALRSLLVLQLAGCQ------- 225
           G     L  L    S L+ L+LS   D ++      V +   ++  L L+G +       
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQF--DNSLIATQLYGLCNLVFLDLSDNNFQGPIPDT- 282
           LS      V    +LV LDLS +    ++       + L  L  L LS       I    
Sbjct: 214 LSTL----VRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCYD---IIPET 264

Query: 283 ---IQNWTSLRHLDLSS 296
              +    +L+ L +  
Sbjct: 265 LLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 11/196 (5%)

Query: 309 KFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
              R++++ LS++ ++      +L   S +Q+L L    L   I  + ++  NL  ++LS
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL--SGSLTNQIGKF-KVLNSVDLSE-- 423
           G   S      +  + S C    L+ L+LS         +   +    + +  ++LS   
Sbjct: 151 G--CSGFSEFALQTLLSSCSR--LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 424 NSISGQVPWSLGK-LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR-NSLTLKANP 481
            ++      +L +   +L +LD+S++ +        F  L+ L     SR   +  +   
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 482 NWVPVFQLEELDLRSC 497
               +  L+ L +   
Sbjct: 267 ELGEIPTLKTLQVFGI 282

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 7e-09
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
           L H P        +L  L + + Q    L    L GL  L  L +  +  +   PD    
Sbjct: 24  LHHLPGAE-----NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
              L  L+LS N    L  + +   S L+ L LS N L 
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 279 IPDTIQNWTSLRHLDLSSN-HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
               +    +L  L + +  H  +L    L     L  L++  + L+  ++         
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 338 IQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
           +  L+LSFN LE    ++     +L+ + LSG
Sbjct: 82  LSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 13/72 (18%), Positives = 26/72 (36%)

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNL 362
               L     L  L + + +    +    L  L  +++L +  + L +  P +F     L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 363 RSISLSGIQLSH 374
             ++LS   L  
Sbjct: 83  SRLNLSFNALES 94

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 805 LRLLTNIDLSNNKFSGEIPAE-ITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFS 862
              LT + + N +    +    +  L ELR+L +  +     +  +       L  L+ S
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYNNL 890
            N LE  +   TV  + L    +S N L
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 184 LYDLSLLENLDLSG-VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242
           L     L  L +     L  +    L    L  L  L +    L    P +      L  
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           L+LS N      ++ +     +L  L LS N   
Sbjct: 85  LNLSFNAL--ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 815 NNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN-IGAMALLESLDFSSNRLEGEIPKN 873
               + +    +     L  L + +      +    +  +  L +L    + L   +  +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 874 T-VNLVFLSHFNISYNNLS 891
                  LS  N+S+N L 
Sbjct: 75  AFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 392 LESLDLSNTTLSGSLTNQ-IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
           L  L + N      L  + +     L ++ + ++ +    P +      L  L++S N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 451 NGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLE 490
             ++S      L SL     S N L       W+  ++ E
Sbjct: 93  E-SLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEE 130

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 23/221 (10%)

Query: 153 IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNA 212
            P+     +     NL+   +     ++     +L+ ++ +  +  D+  V     + N 
Sbjct: 13  FPDDA--FAETIKANLKKKSVTDAVTQN-----ELNSIDQIIANNSDIKSVQGIQYLPN- 64

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLV---TLDLSHNQFDNSLIATQLYGLCNLVFLD 269
              +  L L G +L       ++    L     L L+ NQ   SL       L NL  L 
Sbjct: 65  ---VRYLALGGNKLH-----DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV 115

Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
           L +N  Q          T+L +L+L+ N    L     +K + L  L LS N+LQ  +  
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

Query: 330 VLLENLSSIQSLDLSFNELEWKIPR-SFSRFCNLRSISLSG 369
            + + L+ ++ L L  N+L+  +P   F R  +L+ I L  
Sbjct: 175 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 214

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 52/248 (20%)

Query: 237 FSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSS 296
           F+  +  +L         +      L ++  +  ++++ +      IQ   ++R+L L  
Sbjct: 18  FAETIKANLKKKSV-TDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGG 72

Query: 297 NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
           N    +    L + + L YL L+ N+LQ  + + + + L++++ L L  N+L+      F
Sbjct: 73  NKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVL 416
            +  NL  ++L+  QL         ++  G V D               LTN       L
Sbjct: 130 DKLTNLTYLNLAHNQLQ--------SLPKG-VFD--------------KLTN-------L 159

Query: 417 NSVDLSEN---SISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRN 473
             +DLS N   S+   V     KL+ L+ L +  NQL  +V +  F  L+SL        
Sbjct: 160 TELDLSYNQLQSLPEGV---FDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ------- 208

Query: 474 SLTLKANP 481
            + L  NP
Sbjct: 209 YIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYG---LCNLVFLDLSDNNF 275
             L    ++     +    +S+  +  +++          + G   L N+ +L L  N  
Sbjct: 24  ANLKKKSVTDAVTQN--ELNSIDQIIANNSDI------KSVQGIQYLPNVRYLALGGNKL 75

Query: 276 QG-PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
                   +   T+L +L L+ N    L     +K + L+ L L  N+LQ  +   + + 
Sbjct: 76  HDISALKEL---TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
           L+++  L+L+ N+L+      F +  NL  + LS  QL
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           L L  NQF  +L+  +L    +L  +DLS+N        +  N T L  L LS N    +
Sbjct: 36  LYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
            P   +    L  LSL  N +   +      +LS++  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338
           IP  +        L L  N F+ L+P+ L+ +  L  + LS+NR+   +S+    N++ +
Sbjct: 29  IPRDVTE------LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
            +L LS+N L    PR+F    +LR +SL G  +S
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQF 250
             L L G   + V   P   +  + L ++ L+  ++S     S +N + L+TL LS+N+ 
Sbjct: 34  TELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 251 DNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHLDLSSN 297
              +      GL +L  L L  N+    +P+    + ++L HL + +N
Sbjct: 91  -RCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 2e-07
 Identities = 29/199 (14%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSK-VSNGPLVTNALRSLLVL 219
                ++     +  +   DL  +  L  +  L+   +  +  +S G      L+SL  +
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPV--LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EI 200

Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC---------NLVFLDL 270
              G   S    +  ++  +L  L L     ++      +             NL +L +
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGV-EDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 271 SDNNFQGPIPDTI---QNWTSLRHLDLSSNHFS----YLIPEWLNKFSRLEYLSLSSNRL 323
            D   Q  + +          L  +D+S+   +     L+ + ++K   L+++++  N L
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

Query: 324 QGRISSVLLENLSSIQSLD 342
              +   L ++L     + 
Sbjct: 320 SDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 29/229 (12%)

Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
             F       +  +   +   +  +   ++  L  +  L  L +   N    +    +  
Sbjct: 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPR 192

Query: 287 TSLRHLDLSSNHFSYLIPEWL--NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
            +L+ L++ S      + E +  +    LE L L     +       +     + S    
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV-EDYGFDGDMNVFRPLFSK--- 248

Query: 345 FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG 404
                        RF NL+ + +   +  +  V          +   LE++D+S   L+ 
Sbjct: 249 ------------DRFPNLKWLGIVDAEEQNVVVE---MFLESDILPQLETMDISAGVLTD 293

Query: 405 S----LTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
                L + + K K L  +++  N +S ++   L K   ++ +D+S++Q
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 7e-05
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 25/194 (12%)

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEW---------LNKFSRLEYLSLSSNRLQGRIS 328
            I +  + +     L      F      W         L+    L  L +        I 
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-NLSIG 188

Query: 329 SVLLENLSSIQSLDLSFNELEWKIPRSF--SRFCNLRSISL---SGIQLSHQKVSQVLAI 383
                NL   +SL++    L   +      S   NL  + L            ++    +
Sbjct: 189 KKPRPNL---KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSV---DLSENSISG----QVPWSLGK 436
           FS      L+ L + +      +     +  +L  +   D+S   ++      +   + K
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 437 LSSLRYLDISNNQL 450
           +  L+++++  N L
Sbjct: 306 IKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 54/241 (22%)

Query: 416 LNSVDLSENSIS----GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYAS 471
              +D  E  IS      +   L  +  L  L I     N ++ +    NL SL      
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-NLSIGKKPRPNLKSLEIISGG 204

Query: 472 RNSLTLKA-----NPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT 526
                ++       PN      LE+L L           ++  +++       D  +   
Sbjct: 205 LPDSVVEDILGSDLPN------LEKLVL-----------YVGVEDY-----GFDGDMNVF 242

Query: 527 IPNRFWKSITQFNYLSLSNNQIHGE----IPNLTEVSQLGTLDLSANNLS--GQLPLLA- 579
            P           +L + + +              + QL T+D+SA  L+  G   LL  
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 580 ----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
                ++  +++  N LS  +            L + + ++ ++   +  D    + Y +
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKK---------ELQKSLPMKIDVSDSQEYDDD--YSYPM 351

Query: 636 V 636
           +
Sbjct: 352 I 352

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 48/166 (28%), Positives = 60/166 (36%), Gaps = 22/166 (13%)

Query: 142 LDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLS 201
           LDL   G   +       L+ L +LNL  N L  L     G   DL+ L  L L+   L+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL---SAGVFDDLTELGTLGLANNQLA 96

Query: 202 KVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ--------FDNS 253
            +  G  V + L  L  L L G QL   P       + L  L L+ NQ        FD  
Sbjct: 97  SLPLG--VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK- 153

Query: 254 LIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
                   L NL  L LS N  Q            L+ + L  N F
Sbjct: 154 --------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 48/200 (24%)

Query: 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338
           IP   +       LDL S   + L        ++L +L+L  N+LQ  +S+ + ++L+ +
Sbjct: 33  IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTEL 85

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
            +L L+ N+L       F     L  + L G QL  + +     +F       L+ L L+
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL--KSLPS--GVFDRLTK--LKELRLN 139

Query: 399 NTTLSGSLTNQI-----GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
                    NQ+     G F                      KL++L+ L +S NQL  +
Sbjct: 140 T--------NQLQSIPAGAFD---------------------KLTNLQTLSLSTNQLQ-S 169

Query: 454 VSEIHFANLSSLTFFYASRN 473
           V    F  L  L       N
Sbjct: 170 VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           LDL           T +  T L  L+L  N    L     +  + L  L L++N+L   +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRS-FSRFCNLRSISLSGIQLS 373
              + ++L+ +  L L  N+L+  +P   F R   L+ + L+  QL 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI--------GNLSNLQ 164
            L +LNL YN  + +    F   +  L  L L+         NQ+         +L+ L 
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDD-LTELGTLGLAN--------NQLASLPLGVFDHLTQLD 110

Query: 165 YLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
            L L  N L  L     G    L+ L+ L L+   L  +  G    + L +L  L L+  
Sbjct: 111 KLYLGGNQLKSL---PSGVFDRLTKLKELRLNTNQLQSIPAG--AFDKLTNLQTLSLSTN 165

Query: 225 QLSHFPPLSVANFSSLVTLDLSHNQFD 251
           QL   P  +      L T+ L  NQFD
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           L L  NQ    L       L NL  L L  N           + T L  LDL +N  + L
Sbjct: 45  LYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNL 362
                ++   L+ L +  N+L      +  E L+ +  L L  N+L+     +F R  +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGI--ERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 363 RSISLSG 369
               L G
Sbjct: 162 THAYLFG 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 19/137 (13%)

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ--------FDNSLIATQLYGLCNLVFLD 269
           +L L   Q++   P    +  +L  L L  NQ        FD+         L  L  LD
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------LTQLTVLD 94

Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
           L  N               L+ L +  N  +  +P  + + + L +L+L  N+L+  I  
Sbjct: 95  LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPH 152

Query: 330 VLLENLSSIQSLDLSFN 346
              + LSS+    L  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           L L DN      P    +  +L+ L L SN    L     +  ++L  L L +N+L   +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
            S + + L  ++ L +  N+L  ++PR   R  +L  ++L   QL
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 30/152 (19%)

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
           Q L L  N++    P  F    NL+ + L   QL    +     +F       L  LDL 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPV--GVFDSLTQ--LTVLDLG 96

Query: 399 NTTLSG-------SLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
              L+         L +       L  + +  N ++  +P  + +L+ L +L +  NQL 
Sbjct: 97  TNQLTVLPSAVFDRLVH-------LKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK 148

Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNW 483
            ++    F  LSSLT          L  NP W
Sbjct: 149 -SIPHGAFDRLSSLT-------HAYLFGNP-W 171

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           L L+ N+            L +LV L+L  N   G  P+  +  + ++ L L  N    +
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
             +      +L+ L+L  N++   +     E+L+S+ SL+L+ N
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
            L L    L   P       +SL  L L  N+   SL       L +L +L+LS N  Q 
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
                    T L+ L L++N    L     +K ++L+ L L  N+L+  +   + + L+S
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTS 149

Query: 338 IQSLDLSFN 346
           +Q + L  N
Sbjct: 150 LQYIWLHDN 158

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           L+L  N  Q          T L  L LS N    L     +K ++L  L L  N+LQ  +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPR-SFSRFCNLRSISLSG 369
            + + + L+ ++ L L  N+L+  +P   F R  +L+ I L  
Sbjct: 92  PNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	960
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.6e-94  Score=881.95  Aligned_cols=710  Identities=30%  Similarity=0.433  Sum_probs=472.3

Q ss_pred             CCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccc---cCcc
Q 035852           31 CVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGK---INPA  107 (960)
Q Consensus        31 ~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~---i~~~  107 (960)
                      +.++|++||++||+++.||. .+++|..+++||.|+||+|+  +|||++|+|++.             .+.|.   ++++
T Consensus         9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-------------~l~g~~~~l~~~   72 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-------------PLNVGFSAVSSS   72 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-------------CCCEEHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC-------------CcCCccCccChh
Confidence            46899999999999999998 89999765899999999998  699999999986             77888   9999


Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchh--hhcCCCCCcEEeCCCCCCCCCccCCccccc
Q 035852          108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPN--QIGNLSNLQYLNLRPNYLGGLYVEDLGWLY  185 (960)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~  185 (960)
                      +.++++|+.++++.+.+.  .+|..++.+++|++|+|++|.+.+.+|.  .++++++|++|++++|.+....+       
T Consensus        73 l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------  143 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-------  143 (768)
T ss_dssp             TTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS-------
T ss_pred             HhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC-------
Confidence            999999999999999775  3678999999999999999999999998  89999999999999886542111       


Q ss_pred             CCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHh---hcCC
Q 035852          186 DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQ---LYGL  262 (960)
Q Consensus       186 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---l~~l  262 (960)
                                            ..                       .+.++++|++|++++|.++ +..+..   +.++
T Consensus       144 ----------------------~~-----------------------~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~l  177 (768)
T 3rgz_A          144 ----------------------VS-----------------------GGLKLNSLEVLDLSANSIS-GANVVGWVLSDGC  177 (768)
T ss_dssp             ----------------------CC-----------------------SCCCCTTCSEEECCSSCCE-EETHHHHHHTTCC
T ss_pred             ----------------------HH-----------------------HhccCCCCCEEECCCCccC-CcCChhhhhhccC
Confidence                                  11                       1133444444444444444 333333   4445


Q ss_pred             CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD  342 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  342 (960)
                      ++|++|++++|.+.+..|.  ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.++ ..+..+++|++|+
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~  253 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLN  253 (768)
T ss_dssp             TTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEE
T ss_pred             CCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEE
Confidence            5555555555555443332  4455555555555555554444 5555555555555555554444 4455555555555


Q ss_pred             CCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCC-CCCCEEec
Q 035852          343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKF-KVLNSVDL  421 (960)
Q Consensus       343 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L  421 (960)
                      +++|.+.+.+|..  .+++|                              ++|++++|.+++.+|..+... ++|++|++
T Consensus       254 Ls~n~l~~~~~~~--~l~~L------------------------------~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          254 ISSNQFVGPIPPL--PLKSL------------------------------QYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             CCSSCCEESCCCC--CCTTC------------------------------CEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             CCCCcccCccCcc--ccCCC------------------------------CEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            5555554444432  33333                              333444444444444444332 55555555


Q ss_pred             CCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccc-cceEEecccccCC
Q 035852          422 SENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF-QLEELDLRSCYLG  500 (960)
Q Consensus       422 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~~~l~  500 (960)
                      ++|.+++.+|..++++++|++|++++|++.|.+|...+..+++|++|++++|+++...+..+..+. +|++|++++|.+.
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~  381 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS  381 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence            555555555555555555555555555555555544455555555555555544433333222222 3333333333333


Q ss_pred             CCCCccccc--CccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCC
Q 035852          501 PPFPSWLHS--QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPL  577 (960)
Q Consensus       501 ~~~~~~~~~--~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~  577 (960)
                      +.+|..+..  +++|++|++++|++.+.+|..+ ..+++|++|++++|++++.+| .+..+++|+.|++++|.++     
T Consensus       382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-----  455 (768)
T 3rgz_A          382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-----  455 (768)
T ss_dssp             EECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-----
T ss_pred             CCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-----
Confidence            333333322  3334444444444433333332 233444444444444443333 2333344444444444433     


Q ss_pred             CCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCC
Q 035852          578 LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSL  657 (960)
Q Consensus       578 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  657 (960)
                                      +.+|.    .+..+++|+.|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++
T Consensus       456 ----------------~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          456 ----------------GEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             ----------------SCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             ----------------CcCCH----HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence                            33332    2234567777777777777777777777777778888877777777777777777


Q ss_pred             CcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccc----------------------
Q 035852          658 LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSN----------------------  715 (960)
Q Consensus       658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N----------------------  715 (960)
                      |++|+|++|+++|.+|..++++++|++|++++|+++|.+|.+++ ....+..+++..+                      
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhhhcccccccccccccccccccccccccc
Confidence            88888888877777777777777788888888877777777776 3444443333221                      


Q ss_pred             cccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEec
Q 035852          716 KFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLE  795 (960)
Q Consensus       716 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (960)
                      .+.|..+..+..++.++.++++.|.++|.+|..+++++.                                         
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~-----------------------------------------  633 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS-----------------------------------------  633 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC-----------------------------------------
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhcccc-----------------------------------------
Confidence            234455555666666666667777777776666655444                                         


Q ss_pred             ccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCC
Q 035852          796 GKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV  875 (960)
Q Consensus       796 ~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~  875 (960)
                                  |+.||||+|+++|.||.++++++.|+.||||+|+++|.||+.++++++|++||||+|+++|.||..++
T Consensus       634 ------------L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          634 ------------MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             ------------CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ------------ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence                        48999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccccCCcCCCcC
Q 035852          876 NLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDE  928 (960)
Q Consensus       876 ~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~  928 (960)
                      ++++|++||+|+|+++|+||+++||.+|+..+|.|||+|||+|+. +|....+
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            999999999999999999999999999999999999999999987 8975543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-72  Score=691.51  Aligned_cols=620  Identities=29%  Similarity=0.387  Sum_probs=451.6

Q ss_pred             cCccccCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCCCEEeCCCCcccCCchhhh-cCCCCCcEEeCCCCCCCCCccCC
Q 035852          104 INPALLDFEHLIYLNLSYNDFKGIQIPR--FLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQYLNLRPNYLGGLYVED  180 (960)
Q Consensus       104 i~~~l~~l~~L~~L~Ls~n~~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~i~~l~~~~  180 (960)
                      +|+.++++++|++|||++|.+++. +|.  .++++++|++|+|++|.+.+.+|..+ +++++|++|++++|.+++..+..
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            458899999999999999999874 787  89999999999999999999988876 89999999999999887654433


Q ss_pred             cccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhc
Q 035852          181 LGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLY  260 (960)
Q Consensus       181 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~  260 (960)
                      +..+.++++|++|++++|.+++...    +..+++|++|++++|.+++.+|. ++++++|++|++++|.++ +.+|..+.
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-~~~~~~l~  244 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-GDFSRAIS  244 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-SCHHHHTT
T ss_pred             hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-CcccHHHh
Confidence            3336788999999999998876432    37788999999999999888776 888999999999999988 77888888


Q ss_pred             CCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCC-CCCCEEeeeCccccccccHHHHhcCCCCC
Q 035852          261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF-SRLEYLSLSSNRLQGRISSVLLENLSSIQ  339 (960)
Q Consensus       261 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~  339 (960)
                      .+++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+| ..++++++|+
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~  321 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLE  321 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCC
T ss_pred             cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCcc
Confidence            8999999999999888777765  78888888888888888888877665 888888888888887777 6778888888


Q ss_pred             EEeCCCCCCCcccccc-cccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCC-CCC
Q 035852          340 SLDLSFNELEWKIPRS-FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFK-VLN  417 (960)
Q Consensus       340 ~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~  417 (960)
                      +|++++|.+.+.+|.. +..+++|++|++                              ++|.+++.+|..+..++ +|+
T Consensus       322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~L------------------------------s~n~l~~~~p~~l~~l~~~L~  371 (768)
T 3rgz_A          322 SLALSSNNFSGELPMDTLLKMRGLKVLDL------------------------------SFNEFSGELPESLTNLSASLL  371 (768)
T ss_dssp             EEECCSSEEEEECCHHHHTTCTTCCEEEC------------------------------CSSEEEECCCTTHHHHTTTCS
T ss_pred             EEECCCCcccCcCCHHHHhcCCCCCEEeC------------------------------cCCccCccccHHHHhhhcCCc
Confidence            8888888887777765 777777744444                              44444444555555554 566


Q ss_pred             EEecCCCcCCCCCcccccC--CCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecc
Q 035852          418 SVDLSENSISGQVPWSLGK--LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR  495 (960)
Q Consensus       418 ~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  495 (960)
                      +|++++|.+++.+|..+..  +++|++|++++|++++.+|. .+.++++|+.|++++|.++                   
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-------------------  431 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS-------------------  431 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEE-------------------
T ss_pred             EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCccc-------------------
Confidence            6666666665555555544  55566666666655555544 3444444444444444433                   


Q ss_pred             cccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCC
Q 035852          496 SCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQ  574 (960)
Q Consensus       496 ~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~  574 (960)
                           +.+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|++++.+| .+..+++|++|++++      
T Consensus       432 -----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~------  499 (768)
T 3rgz_A          432 -----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN------  499 (768)
T ss_dssp             -----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS------
T ss_pred             -----CcccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC------
Confidence                 4445555666666666666666666666543 334555555555555555444 233444344444443      


Q ss_pred             CCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCC
Q 035852          575 LPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA  654 (960)
Q Consensus       575 ~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  654 (960)
                                                                 |++++.+|..++.+++|++|++++|+++|.+|..++.
T Consensus       500 -------------------------------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  536 (768)
T 3rgz_A          500 -------------------------------------------NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD  536 (768)
T ss_dssp             -------------------------------------------SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred             -------------------------------------------CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence                                                       3344444444444444444444444444444444444


Q ss_pred             CCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCC----------------------cccccCchHHhhcCcccceeee
Q 035852          655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN----------------------EFSGNVPAWIGERFPRMIILIL  712 (960)
Q Consensus       655 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N----------------------~l~g~ip~~~~~~l~~L~~L~L  712 (960)
                      +++|++|++++|+++|.+|..+..+..+..+++..+                      .+.|..|..+. .++.++.+++
T Consensus       537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l  615 (768)
T 3rgz_A          537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNI  615 (768)
T ss_dssp             CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCT
T ss_pred             CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh-cccccccccc
Confidence            444444444444444444444444333333322221                      24556666665 6888899999


Q ss_pred             ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852          713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI  792 (960)
Q Consensus       713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (960)
                      +.|.+.|.+|..+..+++|+.||+++|+++|.+|.++++++.|                                     
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-------------------------------------  658 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL-------------------------------------  658 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC-------------------------------------
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC-------------------------------------
Confidence            9999999999999999999999999999999999999887666                                     


Q ss_pred             EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852          793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK  872 (960)
Q Consensus       793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~  872 (960)
                                      +.||||+|+++|.||.+++++++|+.||||+|+++|.||+.+++++.|+.||||+|+++|.||+
T Consensus       659 ----------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          659 ----------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             ----------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             ----------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence                            8999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCEEEcccC-cceec
Q 035852          873 NTVNLVFLSHFNISYN-NLSGE  893 (960)
Q Consensus       873 ~l~~l~~L~~l~ls~N-~l~g~  893 (960)
                      . +.+..+....+.+| .|+|.
T Consensus       723 ~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          723 M-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             S-SSGGGSCGGGGCSCTEEEST
T ss_pred             c-hhhccCCHHHhcCCchhcCC
Confidence            6 34555555567777 47874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-58  Score=559.77  Aligned_cols=604  Identities=23%  Similarity=0.231  Sum_probs=384.8

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852          103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG  182 (960)
Q Consensus       103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~  182 (960)
                      ++|..+.  +++++|+|++|.+++. .+..++++++|++|+|++|.+.+..|..++++++|++|++++|.++.++..   
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---   91 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK---   91 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred             ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---
Confidence            3555443  6888999999888874 556788888899999988888888888888888888888888877654332   


Q ss_pred             cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852          183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL  262 (960)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  262 (960)
                                                .+.++++|++|++++|+++++++..|+++++|++|++++|.++ +..+..++++
T Consensus        92 --------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l  144 (680)
T 1ziw_A           92 --------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQL  144 (680)
T ss_dssp             --------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCC
T ss_pred             --------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhccc
Confidence                                      2344555555555555555555555566666666666666555 4444555556


Q ss_pred             CCCCEEeccCcccCCCCccccc--CCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHH--HhcCCCC
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL--LENLSSI  338 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~--l~~l~~L  338 (960)
                      ++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+......  ....++|
T Consensus       145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L  224 (680)
T 1ziw_A          145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI  224 (680)
T ss_dssp             TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred             ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence            6666666666666555444433  34566666666666666666666666666666666665543221100  0134667


Q ss_pred             CEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCE
Q 035852          339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNS  418 (960)
Q Consensus       339 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  418 (960)
                      ++|++++|.+.+..|..+..++.                            ++|++|++++|.+++..+..++.+++|++
T Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~----------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (680)
T 1ziw_A          225 RNLSLSNSQLSTTSNTTFLGLKW----------------------------TNLTMLDLSYNNLNVVGNDSFAWLPQLEY  276 (680)
T ss_dssp             CEEECTTSCCCEECTTTTGGGGG----------------------------SCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cEEEccCCcccccChhHhhccCc----------------------------CCCCEEECCCCCcCccCcccccCcccccE
Confidence            77777777776666665554432                            12366666666666666667777788888


Q ss_pred             EecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEeccccc
Q 035852          419 VDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCY  498 (960)
Q Consensus       419 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~  498 (960)
                      |++++|.+++..|..+..+++|++|++++|...+.++..   .++             .....                 
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~---~lp-------------~i~~~-----------------  323 (680)
T 1ziw_A          277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA---SLP-------------KIDDF-----------------  323 (680)
T ss_dssp             EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------CC-------------EECTT-----------------
T ss_pred             eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc---ccc-------------ccChh-----------------
Confidence            888888887777777777888888888776554332210   111             01111                 


Q ss_pred             CCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCcccccc-CC--CccccCCCCeEEcccCcCcCCC
Q 035852          499 LGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGE-IP--NLTEVSQLGTLDLSANNLSGQL  575 (960)
Q Consensus       499 l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~l~~l~~L~~L~Ls~n~l~~~~  575 (960)
                             .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+... ++  .+..+                 
T Consensus       324 -------~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~-----------------  378 (680)
T 1ziw_A          324 -------SFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-----------------  378 (680)
T ss_dssp             -------TTTTCTTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGG-----------------
T ss_pred             -------hcccCCCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhccc-----------------
Confidence                   22334444444444444433222 2223344444444444433211 00  00000                 


Q ss_pred             CCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCC-cCcCC
Q 035852          576 PLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP-TSLGA  654 (960)
Q Consensus       576 p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~  654 (960)
                                                    ..+.|+.+++++|++++..|..+..+++|++|++++|++++.+| ..+.+
T Consensus       379 ------------------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          379 ------------------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             ------------------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             ------------------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence                                          02355666666666666666777777777777777777776555 56777


Q ss_pred             CCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc--ccCchHHhhcCcccceeeeccccccccCchhhcCCCCCC
Q 035852          655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS--GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK  732 (960)
Q Consensus       655 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  732 (960)
                      +++|++|++++|++++..+..|..+++|+.|++++|.+.  +.+|..+. .+++|+.|++++|++++..|..+..+++|+
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~  507 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLE  507 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccC
Confidence            777788888887777777777777778888888877775  45666665 677888888888888777677777888888


Q ss_pred             eEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEE
Q 035852          733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID  812 (960)
Q Consensus       733 ~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  812 (960)
                      .|++++|++++..+..+..-                                             ...+...+++|+.|+
T Consensus       508 ~L~Ls~N~l~~~~~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          508 ILDLQHNNLARLWKHANPGG---------------------------------------------PIYFLKGLSHLHILN  542 (680)
T ss_dssp             EEECCSSCCGGGGSTTSTTS---------------------------------------------CCCTTTTCTTCCEEE
T ss_pred             EEeCCCCCccccchhhccCC---------------------------------------------cchhhcCCCCCCEEE
Confidence            88888888764322211100                                             000112345568888


Q ss_pred             ccCCcccccCch-hhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCC-CCCCCCEEEcccCcc
Q 035852          813 LSNNKFSGEIPA-EITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV-NLVFLSHFNISYNNL  890 (960)
Q Consensus       813 Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~l~ls~N~l  890 (960)
                      |++|+++ .||. .++++++|+.|||++|++++..|..|..+++|+.|||++|++++.+|..+. .+++|+.+++++|++
T Consensus       543 L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          543 LESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             CCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence            8888888 5554 578888888888888888876666678888888888888888887777666 678888888888888


Q ss_pred             eecCCCCcccCC
Q 035852          891 SGEVPDEAQFAT  902 (960)
Q Consensus       891 ~g~iP~~~~~~~  902 (960)
                      .+..+....|..
T Consensus       622 ~c~c~~~~~~~~  633 (680)
T 1ziw_A          622 DCTCESIAWFVN  633 (680)
T ss_dssp             CBCCCCCSSEEC
T ss_pred             ccCCccHHHHHH
Confidence            876654233433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.7e-56  Score=541.00  Aligned_cols=575  Identities=22%  Similarity=0.227  Sum_probs=351.3

Q ss_pred             CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852          238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS  317 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  317 (960)
                      +++++|++++|.++ +..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|+++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            34555555555544 33334455555555555555555554555555555555555555555544344455555555555


Q ss_pred             eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852          318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL  397 (960)
Q Consensus       318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L  397 (960)
                      +++|.+++ ++...++++++|++|++++|.+++..|..+..+++|++|++++|.++......+..    ...+.|++|++
T Consensus       104 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~~~~~L~~L~L  178 (680)
T 1ziw_A          104 LMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI----FANSSLKKLEL  178 (680)
T ss_dssp             CCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG----GTTCEESEEEC
T ss_pred             CCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc----cccccccEEEC
Confidence            55555542 22244555555555555555555555555555555544444444443322221110    01123456666


Q ss_pred             CCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCccccc---CCCCCcEEecCCcccccccchhhhcCCCC--CcEeeccC
Q 035852          398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLG---KLSSLRYLDISNNQLNGTVSEIHFANLSS--LTFFYASR  472 (960)
Q Consensus       398 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~i~~~~~~~l~~--L~~L~l~~  472 (960)
                      ++|.+++..|..+..+++|+.+++.++.+.+.....+.   ..++|+.|++++|.+.+..+. .+..++.  |+.|++++
T Consensus       179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTT
T ss_pred             CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCC
Confidence            66666555555566666666666665554422111110   124555555555555543332 3333332  55555554


Q ss_pred             ccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccC
Q 035852          473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI  552 (960)
Q Consensus       473 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  552 (960)
                      |.++...+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+.++..                    .+
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--------------------~l  317 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA--------------------SL  317 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------------------------C
T ss_pred             CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc--------------------cc
Confidence            4444444334444444444444444444433434444444444444333222111000                    11


Q ss_pred             C-----CccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCC--CC
Q 035852          553 P-----NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE--IP  625 (960)
Q Consensus       553 ~-----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p  625 (960)
                      |     .+..+++|++|++++|.+++..+.                         .+.++++|+.|++++|.+.+.  .+
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~Ls~n~~~~~~l~~  372 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-------------------------MFTGLINLKYLSLSNSFTSLRTLTN  372 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTT-------------------------TTTTCTTCCEEECTTCBSCCCEECT
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChh-------------------------HhccccCCcEEECCCCchhhhhcch
Confidence            1     233344444444444444433322                         223355555556555553321  12


Q ss_pred             CcccC--CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhh
Q 035852          626 DCWMN--WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGE  702 (960)
Q Consensus       626 ~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  702 (960)
                      ..+..  .++|++|++++|++++..|..+..+++|+.|++++|++++.+| ..|.++++|++|++++|++++..+..+. 
T Consensus       373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-  451 (680)
T 1ziw_A          373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-  451 (680)
T ss_dssp             TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-
T ss_pred             hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-
Confidence            22332  2579999999999998888899999999999999999988776 6788999999999999999866666655 


Q ss_pred             cCcccceeeecccccc--ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcc
Q 035852          703 RFPRMIILILRSNKFH--GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF  780 (960)
Q Consensus       703 ~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  780 (960)
                      .+++|+.|++++|.+.  +.+|..+..+++|+.|++++|++++..|..+..++.                          
T Consensus       452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~--------------------------  505 (680)
T 1ziw_A          452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK--------------------------  505 (680)
T ss_dssp             TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------------------------
T ss_pred             cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc--------------------------
Confidence            7899999999999887  678888999999999999999998766666655544                          


Q ss_pred             ccccccccceEEEecccchhhhhhhccccEEEccCCcccccC----c----hhhhhhcccceeecCcccCcccCchhhcc
Q 035852          781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEI----P----AEITVLRELRSLNLSHNFFSGRIPENIGA  852 (960)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~i----p----~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~  852 (960)
                                                 |+.|+|++|++++..    |    ..++++++|+.|+|++|+++...+..|++
T Consensus       506 ---------------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          506 ---------------------------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             ---------------------------CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ---------------------------cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence                                       489999999998642    2    24789999999999999999443446899


Q ss_pred             CCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCc--ccCCCCccccCCCCCccCcc
Q 035852          853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEA--QFATFDSSSYIGDEYLCGPV  918 (960)
Q Consensus       853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~  918 (960)
                      +++|+.|||++|++++..|..+.++++|+.|++++|++++..|...  .+.++....+.|||..|..+
T Consensus       559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999999999999997666778999999999999999998766532  46677777789999999765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-52  Score=499.22  Aligned_cols=535  Identities=19%  Similarity=0.154  Sum_probs=388.4

Q ss_pred             cEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeC
Q 035852          241 VTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS  320 (960)
Q Consensus       241 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  320 (960)
                      +.++.++..++  .+|..+.  ..+++|++++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|++++
T Consensus        15 ~~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           15 KTYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TEEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ceEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            46677776664  3555443  3677888888887776677777788888888888777777777777777777777777


Q ss_pred             ccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCC
Q 035852          321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNT  400 (960)
Q Consensus       321 n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  400 (960)
                      |++++..| ..++++++|++|++++|.+++..+..++.+++|                              ++|++++|
T Consensus        91 n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L------------------------------~~L~L~~n  139 (606)
T 3t6q_A           91 NPLIFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQKTL------------------------------ESLYLGSN  139 (606)
T ss_dssp             CCCSEECT-TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC------------------------------CEEECCSS
T ss_pred             CcccccCh-hhhcccccccEeeccccCcccCCcchhccCCcc------------------------------cEEECCCC
Confidence            77775444 567777777777777777776555666666666                              44555555


Q ss_pred             CCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCc--EEecCCcccccccchhhhcCCCCCcEeeccCcccccc
Q 035852          401 TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLR--YLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLK  478 (960)
Q Consensus       401 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~  478 (960)
                      .+++.....+..+++|++|++++|.+++..|..+..+++|+  .|++++|.+.+..+. .+ ...+|+.+++++|.....
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~~~~~~~  217 (606)
T 3t6q_A          140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AF-DSAVFQSLNFGGTQNLLV  217 (606)
T ss_dssp             CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TT-TTCEEEEEECTTCSCHHH
T ss_pred             cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh-Hh-hhccccccccCCchhHHH
Confidence            55542222333477788888888887777677777777777  777777777755443 23 335666666666541100


Q ss_pred             CCCCCcccc--cceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCC--cccEEEccCccccccCC-
Q 035852          479 ANPNWVPVF--QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT--QFNYLSLSNNQIHGEIP-  553 (960)
Q Consensus       479 ~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~-  553 (960)
                         .+..+.  .++.+.+..+.-             +.         ...++...+..+.  +|+.|++++|.+++..+ 
T Consensus       218 ---~~~~l~~~~l~~l~~~~~~~-------------~~---------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          218 ---IFKGLKNSTIQSLWLGTFED-------------MD---------DEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             ---HHHHTTTCEEEEEECCCCTT-------------SC---------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ---Hhhhccccchhheechhhcc-------------cc---------ccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence               011111  122222211100             00         0122222222222  56666666666665555 


Q ss_pred             CccccCCCCeEEcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCc-cc
Q 035852          554 NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC-WM  629 (960)
Q Consensus       554 ~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~  629 (960)
                      .+..+++|++|++++|.++ .+|..   +++|++|++++|++.+..|    ..+.++++|+.|++++|.+.+.+|.. +.
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ----ISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG----GCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch----hhhhccCcCCEEECCCCCcccccchhhhh
Confidence            3666666777777777666 33332   3566777777777665433    23455788999999999988777654 88


Q ss_pred             CCCcccEEECCCCccccCC--CcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          630 NWRYLLVLRLDNNKFTGKL--PTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      .+++|++|++++|++++..  |..++.+++|++|++++|++.+..|..+..+++|++|++++|++++..|...+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            9999999999999998765  77899999999999999999988899999999999999999999987776544479999


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCcccc-C--ccccccccchhccCCCCcccccCCCCCCCCCCcccccc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI-P--TCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITE  784 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i-p--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (960)
                      ++|++++|++.+..|..+..+++|+.|++++|++++.. |  ..+..                                 
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------------------------------  474 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT---------------------------------  474 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG---------------------------------
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc---------------------------------
Confidence            99999999999999999999999999999999997632 2  22332                                 


Q ss_pred             ccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCC
Q 035852          785 QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN  864 (960)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N  864 (960)
                                          +++|+.|+|++|++++.+|..++.+++|+.|||++|++++.+|+.+++++.| .||+++|
T Consensus       475 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          475 --------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             --------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             --------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence                                3456899999999999999999999999999999999999999999999999 9999999


Q ss_pred             cccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852          865 RLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       865 ~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      ++++.+|..+..+++|+.+++++|++.+..|.
T Consensus       534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          534 HISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99999898899999999999999999987663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-52  Score=497.93  Aligned_cols=533  Identities=18%  Similarity=0.178  Sum_probs=334.1

Q ss_pred             eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852          192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls  271 (960)
                      .++.++..++.++..   +  .+.+++|++++|.++++.+..|.++++|++|++++|.++ +..|..|.++++|++|+++
T Consensus        16 ~~~c~~~~l~~iP~~---l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           16 TYNCENLGLNEIPGT---L--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             EEECTTSCCSSCCTT---S--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred             eEECCCCCcccCcCC---C--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCC
Confidence            455555555544321   1  124555555555555555555555555555555555554 4444455555555555555


Q ss_pred             CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852          272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK  351 (960)
Q Consensus       272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~  351 (960)
                      +|++++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+.+... ..+..+++|++|++++|.+++ 
T Consensus        90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-  167 (606)
T 3t6q_A           90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHY-  167 (606)
T ss_dssp             TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCE-
T ss_pred             CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCcccc-
Confidence            555554445555555555555555555554444444445555555555554442111 112224444444444444443 


Q ss_pred             cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCC--EEecCCCcCCCC
Q 035852          352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLN--SVDLSENSISGQ  429 (960)
Q Consensus       352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~  429 (960)
                                                                           ..+..++.+++|+  +|++++|.+++.
T Consensus       168 -----------------------------------------------------~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          168 -----------------------------------------------------LSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             -----------------------------------------------------ECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             -----------------------------------------------------cChhhhhhhcccceeEEecCCCccCcc
Confidence                                                                 3344444444444  455555555544


Q ss_pred             CcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccc-----cCCCCCcccc--cceEEecccccCCCC
Q 035852          430 VPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL-----KANPNWVPVF--QLEELDLRSCYLGPP  502 (960)
Q Consensus       430 ~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~--~L~~L~l~~~~l~~~  502 (960)
                      .|..+. ..+|++|++++|..   ++. .+..+..+....+....+..     .....+..+.  +++.+++++|.+.+.
T Consensus       195 ~~~~~~-~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          195 EPGAFD-SAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CTTTTT-TCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             ChhHhh-hccccccccCCchh---HHH-HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            433322 23455555555541   111 22233333222222111111     0111111111  566666666666666


Q ss_pred             CCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCCCcc
Q 035852          503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLASN  581 (960)
Q Consensus       503 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  581 (960)
                      .+..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..| .+..+++|++|++++|.+.+.+|.    
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----  343 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT----  343 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS----
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch----
Confidence            5555666666666666666554 444432 345566666666666555444 455555555555555555443332    


Q ss_pred             CcEEEcccccccccccchhhcccCCCCcccEEecccccccCCC--CCcccCCCcccEEECCCCccccCCCcCcCCCCCCc
Q 035852          582 VMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI--PDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR  659 (960)
Q Consensus       582 L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  659 (960)
                                          ..+..+++|+.|++++|.+++..  |..+..+++|++|++++|++.+..|..+..+++|+
T Consensus       344 --------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          344 --------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             --------------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             --------------------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence                                12345677788888888777665  67788889999999999999888888899999999


Q ss_pred             EEECCCCeecccCCcC-CcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc---CchhhcCCCCCCeEe
Q 035852          660 SLHLRNNNLSGTLPVS-LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV---FPLELCHLAFLKILV  735 (960)
Q Consensus       660 ~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~  735 (960)
                      +|++++|++++..|.. +..+++|++|++++|++++..|..+. .+++|++|++++|++++.   .+..+..+++|+.|+
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            9999999998776654 88899999999999999877777766 789999999999998863   335688899999999


Q ss_pred             ecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccC
Q 035852          736 LAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN  815 (960)
Q Consensus       736 Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  815 (960)
                      +++|++++..|..++.++.|                                                     +.|||++
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L-----------------------------------------------------~~L~Ls~  509 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMM-----------------------------------------------------NHVDLSH  509 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTC-----------------------------------------------------CEEECCS
T ss_pred             CCCCccCccChhhhccccCC-----------------------------------------------------CEEECCC
Confidence            99999998888777666554                                                     8999999


Q ss_pred             CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852          816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       816 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                      |++++.+|+.+.+++.| .|||++|++++.+|+.++.+++|+.|++++|++++..+
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999 99999999999999999999999999999999998665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8e-54  Score=513.34  Aligned_cols=111  Identities=17%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHhhhcCCCCC--------CCCCCCCCCCCCccc---cceeeCCCCCceEEEeCCCCCCcCCCcccccccc
Q 035852           31 CVESEREALLSFKQDLEDPS--------NRLATWIGDGDCCKW---AGVICDNFTGHVLELHLGNPWEDDHGHQAKESSA   99 (960)
Q Consensus        31 ~~~~~~~~ll~~k~~~~~~~--------~~l~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~   99 (960)
                      ....|++||.++|.++.++.        ...++|..+++||.|   +||+|+.. |||++|+|++.             .
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~-------------~   92 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGF-------------G   92 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTS-------------C
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCc-------------c
Confidence            34579999999999986442        124589866899999   99999864 99999999996             8


Q ss_pred             cccccCccccCCCCCCEEeCCCCCCCCC-----------CCccccCCCCCCCEEeCCCCcccCCchhhhc
Q 035852          100 LVGKINPALLDFEHLIYLNLSYNDFKGI-----------QIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG  158 (960)
Q Consensus       100 ~~g~i~~~l~~l~~L~~L~Ls~n~~~~~-----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  158 (960)
                      +.|.+|++++++++|++|+|++|.+...           .+|...  +.+|+ ++++++.+.+.+|..+.
T Consensus        93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred             cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence            8999999999999999999999976211           123222  34455 55555555555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.6e-52  Score=499.88  Aligned_cols=542  Identities=20%  Similarity=0.187  Sum_probs=366.1

Q ss_pred             cceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEe
Q 035852          190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLD  269 (960)
Q Consensus       190 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  269 (960)
                      .++++.+++.++.++..   +  .+++++|++++|.+++.++..|.++++|++|++++|.++ +..|..|.++++|++|+
T Consensus        13 ~~~~~c~~~~l~~ip~~---~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDD---I--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSCCSSCCTT---S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCceEccCCCcccCCCC---C--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeE
Confidence            35677888777776432   1  267888888888888877777888888888888888776 55666777788888888


Q ss_pred             ccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccc-cccHHHHhcCCCCCEEeCCCCCC
Q 035852          270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG-RISSVLLENLSSIQSLDLSFNEL  348 (960)
Q Consensus       270 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~Ls~n~l  348 (960)
                      +++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+| ..++++++|++|++++|.+
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcc
Confidence            88888777777777788888888888887777666667777777777777777764 455 5667777777777777777


Q ss_pred             CcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC-
Q 035852          349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS-  427 (960)
Q Consensus       349 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-  427 (960)
                      ++..+..++.+++|+.                          .++++++++|.+++..+..+.. .+|++|++++|.++ 
T Consensus       166 ~~~~~~~~~~l~~L~~--------------------------~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~  218 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQ--------------------------VNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSS  218 (606)
T ss_dssp             CEECTTTTHHHHHCTT--------------------------CCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCH
T ss_pred             eecChhhhhhhhcccc--------------------------ccceeeccCCCcceeCcccccC-ceeeeeeccCCccch
Confidence            6655555554444310                          1245555555555333332322 25555555555554 


Q ss_pred             CCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCccc
Q 035852          428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL  507 (960)
Q Consensus       428 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  507 (960)
                      +.+|..+.+++.|+.+++..+.+.+..         .+..                                  ..+..+
T Consensus       219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l~~----------------------------------~~~~~~  255 (606)
T 3vq2_A          219 NIMKTCLQNLAGLHVHRLILGEFKDER---------NLEI----------------------------------FEPSIM  255 (606)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTSC---------CCSC----------------------------------CCGGGG
T ss_pred             hHHHHHhccccccccccccccccccCC---------cccc----------------------------------cChHHh
Confidence            233444445555555444333222100         0000                                  000001


Q ss_pred             ccCc--cCcEEec-cCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcE
Q 035852          508 HSQN--HLVNLDI-SDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMV  584 (960)
Q Consensus       508 ~~~~--~L~~L~L-s~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~  584 (960)
                      ..+.  .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.. +|.+..+++|++|++++|.+ +.+|.       
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp~-------  324 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFPT-------  324 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCCC-------
T ss_pred             hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhccccccCCEEEcccccC-ccccc-------
Confidence            0100  2233333 23333333333  3344455555555554432 23444444444444444444 22221       


Q ss_pred             EEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccC--CCcCcCCCCCCcEEE
Q 035852          585 LDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK--LPTSLGALSLLRSLH  662 (960)
Q Consensus       585 L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~  662 (960)
                                         + .++.|+.|++++|+..+.+  .+..+++|++|++++|++++.  +|..+..+++|++|+
T Consensus       325 -------------------~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  382 (606)
T 3vq2_A          325 -------------------L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD  382 (606)
T ss_dssp             -------------------C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred             -------------------C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence                               1 3556666666666544433  456778888888888888765  477778888888888


Q ss_pred             CCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852          663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       663 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      +++|.+++ +|..+..+++|++|++++|++++..|...+..+++|++|++++|++.+..|..+..+++|+.|++++|+++
T Consensus       383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  461 (606)
T 3vq2_A          383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK  461 (606)
T ss_dssp             CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence            88888874 66788888888888888888887766333337888888888888888888888889999999999999998


Q ss_pred             cc-cCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccccc
Q 035852          743 GT-IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE  821 (960)
Q Consensus       743 g~-ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~  821 (960)
                      +. +|..++.++.|                                                     +.|+|++|++++.
T Consensus       462 ~~~~~~~~~~l~~L-----------------------------------------------------~~L~Ls~n~l~~~  488 (606)
T 3vq2_A          462 DNTLSNVFANTTNL-----------------------------------------------------TFLDLSKCQLEQI  488 (606)
T ss_dssp             GGEECSCCTTCTTC-----------------------------------------------------CEEECTTSCCCEE
T ss_pred             CcchHHhhccCCCC-----------------------------------------------------CEEECCCCcCCcc
Confidence            74 67666655544                                                     8999999999999


Q ss_pred             CchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCC-CCCEEEcccCcceecCCC
Q 035852          822 IPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLV-FLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       822 ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~l~ls~N~l~g~iP~  896 (960)
                      +|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999999999999999999999998 7888888886 699999999999887664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.1e-52  Score=497.92  Aligned_cols=536  Identities=17%  Similarity=0.166  Sum_probs=413.3

Q ss_pred             CcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcE
Q 035852          163 LQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT  242 (960)
Q Consensus       163 L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  242 (960)
                      -++++.+++.++.++...      .+++++|++++|.++++.  +..+.++++|++|++++|.++++.|..|.++++|++
T Consensus        13 ~~~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeC--hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            468999999888776532      278999999999998763  446889999999999999999999999999999999


Q ss_pred             EeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCC-cchhhhcCCCCCCEEeeeCc
Q 035852          243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSY-LIPEWLNKFSRLEYLSLSSN  321 (960)
Q Consensus       243 L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n  321 (960)
                      |++++|.++ +..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|
T Consensus        85 L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           85 LILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             eECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            999999998 6778999999999999999999998877889999999999999999986 56999999999999999999


Q ss_pred             cccccccHHHHhcCCCCC----EEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852          322 RLQGRISSVLLENLSSIQ----SLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL  397 (960)
Q Consensus       322 ~l~~~i~~~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L  397 (960)
                      ++++..+ ..++.+++|+    +|++++|.+++..+..+... +|                              +.|++
T Consensus       164 ~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L------------------------------~~L~L  211 (606)
T 3vq2_A          164 YIQTITV-NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL------------------------------HELTL  211 (606)
T ss_dssp             CCCEECT-TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE------------------------------EEEEE
T ss_pred             cceecCh-hhhhhhhccccccceeeccCCCcceeCcccccCc-ee------------------------------eeeec
Confidence            9986544 5566666554    89999999985544444332 34                              77888


Q ss_pred             CCCCCC-CchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCC--CCcEeec-cCc
Q 035852          398 SNTTLS-GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLS--SLTFFYA-SRN  473 (960)
Q Consensus       398 s~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~--~L~~L~l-~~n  473 (960)
                      ++|.++ +..|..+.+++.|+.+++..+.+.+..        .+..           ++...+..+.  .++.+++ ..+
T Consensus       212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~-----------~~~~~~~~l~~l~l~~l~l~~~~  272 (606)
T 3vq2_A          212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI-----------FEPSIMEGLCDVTIDEFRLTYTN  272 (606)
T ss_dssp             ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC-----------CCGGGGTTGGGSEEEEEEECCCT
T ss_pred             cCCccchhHHHHHhccccccccccccccccccCC--------cccc-----------cChHHhhhhhhccHhheeccccc
Confidence            888776 467888999999999988765544221        1110           0111111111  1222333 222


Q ss_pred             cccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC
Q 035852          474 SLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP  553 (960)
Q Consensus       474 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  553 (960)
                      .+.                        +..|. +..+++|+.|++++|.+ ..+|  .+..+++|++|++++|.+ +.+|
T Consensus       273 ~~~------------------------~~~~~-~~~l~~L~~L~l~~~~~-~~l~--~l~~~~~L~~L~l~~n~l-~~lp  323 (606)
T 3vq2_A          273 DFS------------------------DDIVK-FHCLANVSAMSLAGVSI-KYLE--DVPKHFKWQSLSIIRCQL-KQFP  323 (606)
T ss_dssp             TCC------------------------GGGGS-CGGGTTCSEEEEESCCC-CCCC--CCCTTCCCSEEEEESCCC-SSCC
T ss_pred             ccc------------------------ccccc-cccCCCCCEEEecCccc-hhhh--hccccccCCEEEcccccC-cccc
Confidence            222                        22222 34444444444444444 2233  233455666666666666 4555


Q ss_pred             CccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCC--CCCcccCC
Q 035852          554 NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE--IPDCWMNW  631 (960)
Q Consensus       554 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~l~~l  631 (960)
                      .+ .+++|+.|++++|...+.++                           +..+++|+.|++++|++++.  +|..+..+
T Consensus       324 ~~-~l~~L~~L~l~~n~~~~~~~---------------------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          324 TL-DLPFLKSLTLTMNKGSISFK---------------------------KVALPSLSYLDLSRNALSFSGCCSYSDLGT  375 (606)
T ss_dssp             CC-CCSSCCEEEEESCSSCEECC---------------------------CCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred             cC-CCCccceeeccCCcCccchh---------------------------hccCCCCCEEECcCCccCCCcchhhhhccC
Confidence            55 66666666666664332221                           22355666666666666654  47778888


Q ss_pred             CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhhcCccccee
Q 035852          632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIIL  710 (960)
Q Consensus       632 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L  710 (960)
                      ++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.++++|++|++++|++++.+|..+. .+++|++|
T Consensus       376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L  453 (606)
T 3vq2_A          376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTL  453 (606)
T ss_dssp             SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEE
T ss_pred             CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEE
Confidence            999999999999884 67888999999999999999998877 6888999999999999999988887776 79999999


Q ss_pred             eeccccccc-cCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852          711 ILRSNKFHG-VFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE  789 (960)
Q Consensus       711 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (960)
                      ++++|++++ .+|..+..+++|+.|++++|++++..|..+++++.|                                  
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------  499 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL----------------------------------  499 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC----------------------------------
Confidence            999999998 478889999999999999999998888877766554                                  


Q ss_pred             eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCC-CCCEEECcCCcccc
Q 035852          790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA-LLESLDFSSNRLEG  868 (960)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~l~g  868 (960)
                                         +.|+|++|++++.+|..++++++|+.|||++|+++ .+|+.+..++ +|+.|++++|.+.+
T Consensus       500 -------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          500 -------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             -------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             -------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence                               89999999999999999999999999999999999 6888899997 59999999999998


Q ss_pred             cCC
Q 035852          869 EIP  871 (960)
Q Consensus       869 ~iP  871 (960)
                      ..|
T Consensus       560 ~c~  562 (606)
T 3vq2_A          560 ICE  562 (606)
T ss_dssp             SST
T ss_pred             CCc
Confidence            665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3e-50  Score=499.10  Aligned_cols=567  Identities=21%  Similarity=0.191  Sum_probs=393.6

Q ss_pred             eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852          192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls  271 (960)
                      ..+.++++++.++.      ..++|++|+|++|.+++..+..|.++++|++|++++|.......|..+.++++|++|+|+
T Consensus         8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            45555666666542      346788888888888888888888889999999988866523337788888889999998


Q ss_pred             CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhh--hcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC
Q 035852          272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW--LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE  349 (960)
Q Consensus       272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~  349 (960)
                      +|.+.+..|..|+++++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+...++++++|++|++++|.++
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            88888888888888888899999888888766554  7888888888888888876554356788888888888888888


Q ss_pred             cccccccccC--CCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCC------CCEEec
Q 035852          350 WKIPRSFSRF--CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKV------LNSVDL  421 (960)
Q Consensus       350 ~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L  421 (960)
                      +..+..+..+  ++|+.|++++|                              .+.+..|..++.+++      |+.|++
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n------------------------------~l~~~~~~~~~~~~~~~~~~~L~~L~L  211 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAAN------------------------------SLYSRVSVDWGKCMNPFRNMVLEILDV  211 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCS------------------------------BSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred             eeCHHHcccccCCccceEECCCC------------------------------ccccccccchhhcCCccccCceeEEec
Confidence            7777776665  56644444444                              444444433333333      667777


Q ss_pred             CCCcCCCCCcccccCC---CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcc--cccceEEeccc
Q 035852          422 SENSISGQVPWSLGKL---SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP--VFQLEELDLRS  496 (960)
Q Consensus       422 ~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~  496 (960)
                      ++|.+++.++..+...   ++++.+.+..+......                ..+.+.......+..  ..+|++|++++
T Consensus       212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred             CCCcCchhHHHHHHhhcCcccccceecccccccccc----------------cccccCCCChhhhhccccCCccEEECCC
Confidence            7776666666555432   45566666543322110                111122222222222  25677777777


Q ss_pred             ccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCC
Q 035852          497 CYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP  576 (960)
Q Consensus       497 ~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  576 (960)
                      |.+.+..+..+..+++|+.|++++|++.+..|.. +..+++|++|++++|.+++..+                       
T Consensus       276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-----------------------  331 (844)
T 3j0a_A          276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYS-----------------------  331 (844)
T ss_dssp             CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCS-----------------------
T ss_pred             CcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCH-----------------------
Confidence            7777777777888888888888888775544432 3445555555555555443332                       


Q ss_pred             CCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCC
Q 035852          577 LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS  656 (960)
Q Consensus       577 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  656 (960)
                      .                         .+.++++|+.|++++|++.+..+..+..+++|++|++++|.+++ ++    .++
T Consensus       332 ~-------------------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~  381 (844)
T 3j0a_A          332 S-------------------------NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIP  381 (844)
T ss_dssp             C-------------------------SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCC
T ss_pred             H-------------------------HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCC
Confidence            1                         12234556666666666666666677788888888888888873 22    377


Q ss_pred             CCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCch-hhcCCCCCCeEe
Q 035852          657 LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL-ELCHLAFLKILV  735 (960)
Q Consensus       657 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~  735 (960)
                      +|+.|++++|+++ .+|..   ..+++.|++++|++++.-.......+++|+.|++++|++++..+. .+..+++|+.|+
T Consensus       382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~  457 (844)
T 3j0a_A          382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF  457 (844)
T ss_dssp             SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred             CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc
Confidence            8888899988888 55654   467889999999998532222223789999999999999865443 355688999999


Q ss_pred             ecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccC
Q 035852          736 LAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN  815 (960)
Q Consensus       736 Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  815 (960)
                      +++|.+++..+..+..                                                .....+++|+.|||++
T Consensus       458 Ls~N~l~~~~~~~~~~------------------------------------------------~~~~~l~~L~~L~Ls~  489 (844)
T 3j0a_A          458 LGENMLQLAWETELCW------------------------------------------------DVFEGLSHLQVLYLNH  489 (844)
T ss_dssp             EESCCCSSSCCSCCCS------------------------------------------------SCSSCBCCEECCCCCH
T ss_pred             CCCCccccccccccch------------------------------------------------hhhcCcccccEEECCC
Confidence            9999997433321100                                                0001234568999999


Q ss_pred             CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852          816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       816 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      |++++.+|..++.+++|+.|||++|++++..|..+.  ++|+.|||++|+++|.+|..+.   .|+.+++++|++.+..+
T Consensus       490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence            999999999999999999999999999987776665  8999999999999999998764   78899999999988765


Q ss_pred             CCcccCCCCccccCCCCCccCccccCCcCC
Q 035852          896 DEAQFATFDSSSYIGDEYLCGPVLKKLCTV  925 (960)
Q Consensus       896 ~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~  925 (960)
                      .    ..|..-...+|..+||.+....|..
T Consensus       565 ~----~~f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          565 L----STFINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             C----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             c----HHHHHHHHhcCcccccccccCccCC
Confidence            3    2222222345667788776667754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-50  Score=488.11  Aligned_cols=331  Identities=15%  Similarity=0.249  Sum_probs=195.4

Q ss_pred             CCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCC-----CC--ccc------------cceeeCCCCCceEEEeCCCCCCc
Q 035852           28 YVGCVESEREALLSFKQDLEDPSNRLATWIGDG-----DC--CKW------------AGVICDNFTGHVLELHLGNPWED   88 (960)
Q Consensus        28 ~~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~   88 (960)
                      ...+..+|++||++||+++.+|     +|+.+.     +|  |.|            .||+|+. .+||++|+|++.   
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~---  333 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF---  333 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence            3445678999999999999877     785422     55  999            9999986 799999999996   


Q ss_pred             CCCcccccccccccccCccccCCCCCCEEeC-CCCCCCCCCCccccCCC-CCCCE--------------Ee-CCCCcccC
Q 035852           89 DHGHQAKESSALVGKINPALLDFEHLIYLNL-SYNDFKGIQIPRFLGSM-GNLRF--------------LD-LSGAGFVG  151 (960)
Q Consensus        89 ~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~L-s~n~~~~~~~p~~l~~l-~~L~~--------------L~-Ls~n~l~~  151 (960)
                                .+.|.+|++++++++|++|+| ++|.+.|. .|...... ..+..              ++ .....+.+
T Consensus       334 ----------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          334 ----------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             ----------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             ----------CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence                      899999999999999999999 88877653 22111100 00000              00 00011122


Q ss_pred             CchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC
Q 035852          152 MIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP  231 (960)
Q Consensus       152 ~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  231 (960)
                      .++..+...+........ +.+.               ++.+.+..                        ..|++++ +|
T Consensus       403 l~~~~l~~~~~~~~i~~~-~~l~---------------l~~l~l~~------------------------~~N~L~~-IP  441 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKD-SRIS---------------LKDTQIGN------------------------LTNRITF-IS  441 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCC-CCCC---------------CCTTTTTC------------------------CSCEEEE-EC
T ss_pred             HHHHHhhhCccccccccc-cccc---------------hhhceecc------------------------ccCcccc-hh
Confidence            222222211111111100 0000               00011110                        1133344 33


Q ss_pred             CCccCCCCCcEEeCCCCCCCC----------------ChhHHhhc--CCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852          232 LSVANFSSLVTLDLSHNQFDN----------------SLIATQLY--GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD  293 (960)
Q Consensus       232 ~~l~~l~~L~~L~Ls~n~l~~----------------~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  293 (960)
                      ..++++++|++|+|++|.+++                +.+|+.++  ++++|++|+|++|++.+.+|..++++++|++|+
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            445555555555555555541                23666665  777777777777777777777777777777777


Q ss_pred             CCCCc-CCC-cchhhhcCCC-------CCCEEeeeCccccccccH-HHHhcCCCCCEEeCCCCCCCcccccccccCCCCC
Q 035852          294 LSSNH-FSY-LIPEWLNKFS-------RLEYLSLSSNRLQGRISS-VLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLR  363 (960)
Q Consensus       294 Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  363 (960)
                      +++|+ +++ .+|..+++++       +|+.|++++|.++ .+|. ..++++++|++|++++|.++ .+| .++.+++| 
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L-  597 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL-  597 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE-
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc-
Confidence            77776 666 6666555444       6666777666666 5662 15666666666666666666 555 45544444 


Q ss_pred             EEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCC-CCEEecCCCcCCCCCcccccCCCC--C
Q 035852          364 SISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKV-LNSVDLSENSISGQVPWSLGKLSS--L  440 (960)
Q Consensus       364 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L  440 (960)
                                                   +.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++.  |
T Consensus       598 -----------------------------~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          598 -----------------------------TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM  646 (876)
T ss_dssp             -----------------------------SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred             -----------------------------eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence                                         44555555555 45555666666 666666666666 55655554433  6


Q ss_pred             cEEecCCccccccc
Q 035852          441 RYLDISNNQLNGTV  454 (960)
Q Consensus       441 ~~L~L~~n~l~~~i  454 (960)
                      +.|++++|++.+.+
T Consensus       647 ~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          647 GSVDFSYNKIGSEG  660 (876)
T ss_dssp             EEEECCSSCTTTTS
T ss_pred             CEEECcCCcCCCcc
Confidence            66666666665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=484.32  Aligned_cols=536  Identities=21%  Similarity=0.223  Sum_probs=356.5

Q ss_pred             EEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcc-hhhhcCCCCCCEEeeeC
Q 035852          242 TLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLI-PEWLNKFSRLEYLSLSS  320 (960)
Q Consensus       242 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~  320 (960)
                      ..+.+++.++  .+|.   -.++|++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|+|++
T Consensus         8 ~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            4555666664  2443   3456666666666666666666666666666666666444433 55566666666666666


Q ss_pred             ccccccccHHHHhcCCCCCEEeCCCCCCCcccccc--cccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcC
Q 035852          321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS--FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS  398 (960)
Q Consensus       321 n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls  398 (960)
                      |.+.+..| ..+.++++|++|+|++|.+++.+|..  +..+++|                              ++|+++
T Consensus        83 N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L------------------------------~~L~Ls  131 (844)
T 3j0a_A           83 SKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL------------------------------TRLDLS  131 (844)
T ss_dssp             CCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC------------------------------CEEEEE
T ss_pred             CcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccCCC------------------------------CEEECC
Confidence            66664444 55666666666666666665544433  5555554                              444444


Q ss_pred             CCCCCCchh-hhhcCCCCCCEEecCCCcCCCCCcccccCC--CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccc
Q 035852          399 NTTLSGSLT-NQIGKFKVLNSVDLSENSISGQVPWSLGKL--SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL  475 (960)
Q Consensus       399 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l  475 (960)
                      +|.+++..+ ..++++++|++|++++|.+++..+..+..+  ++|+.|++++|.+.+..+. .+..+++           
T Consensus       132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~-----------  199 (844)
T 3j0a_A          132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMN-----------  199 (844)
T ss_dssp             SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSC-----------
T ss_pred             CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCC-----------
Confidence            455544333 456666777777777776666666666555  5666666666666554443 2222222           


Q ss_pred             cccCCCCCcccccceEEecccccCCCCCCcccccC---ccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccC
Q 035852          476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ---NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI  552 (960)
Q Consensus       476 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  552 (960)
                            .+ ...+|++|++++|.+.+..+..+...   ..++.+.++.+......                ..+.+.+..
T Consensus       200 ------~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~  256 (844)
T 3j0a_A          200 ------PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPD  256 (844)
T ss_dssp             ------TT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGG
T ss_pred             ------cc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc----------------cccccCCCC
Confidence                  00 00124444444444443333333221   23344444322111000                001111100


Q ss_pred             C-Cccc--cCCCCeEEcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCC
Q 035852          553 P-NLTE--VSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD  626 (960)
Q Consensus       553 ~-~l~~--l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  626 (960)
                      . .+..  .++|+.|++++|.+.+..|..   +++|+.|++++|++.+..+    ..+.++++|+.|++++|.+++..|.
T Consensus       257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT----TTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh----HHhcCCCCCCEEECCCCCCCccCHH
Confidence            0 1111  134555555555555444432   3455566666666554433    2345688999999999999988899


Q ss_pred             cccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcc
Q 035852          627 CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPR  706 (960)
Q Consensus       627 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  706 (960)
                      .+..+++|++|++++|++.+..+..|..+++|++|++++|.+++ ++    .+++|+.|++++|+++ .+|..    ..+
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~----~~~  402 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI----NLT  402 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC----CTT
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc----ccc
Confidence            99999999999999999998888889999999999999999984 33    3789999999999998 67753    568


Q ss_pred             cceeeeccccccccC-chhhcCCCCCCeEeecCCcCccccCcc-ccccccchhccCCCCcccccCCCCCCCCCCcccccc
Q 035852          707 MIILILRSNKFHGVF-PLELCHLAFLKILVLAGNNLSGTIPTC-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITE  784 (960)
Q Consensus       707 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (960)
                      ++.|++++|++++.. +..+..+++|+.|++++|++++..+.. +..                                 
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------------------------  449 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE---------------------------------  449 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------------
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc---------------------------------
Confidence            999999999998643 345678999999999999998654331 111                                 


Q ss_pred             ccccceEEEecccchhhhhhhccccEEEccCCccc-----ccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEE
Q 035852          785 QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFS-----GEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESL  859 (960)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L  859 (960)
                                          +++|+.|+|++|+++     +..|..+..+++|+.|||++|++++.+|..++.+++|+.|
T Consensus       450 --------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  509 (844)
T 3j0a_A          450 --------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL  509 (844)
T ss_dssp             --------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred             --------------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence                                234689999999997     5556778999999999999999999999999999999999


Q ss_pred             ECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccc
Q 035852          860 DFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVL  919 (960)
Q Consensus       860 ~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~  919 (960)
                      ||++|++++..|..+.  ++|+.|++++|+++|.+|..  |..+....+.|||..|..++
T Consensus       510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            9999999987777766  89999999999999999865  55667777899999997654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-47  Score=453.93  Aligned_cols=522  Identities=18%  Similarity=0.173  Sum_probs=300.3

Q ss_pred             ceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEec
Q 035852          191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL  270 (960)
Q Consensus       191 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L  270 (960)
                      +.++.++.+++.++.   .+  .+++++|++++|.++++.+..|.++++|++|++++|.++ +..+..+.++++|++|++
T Consensus        10 ~~~~c~~~~l~~ip~---~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A           10 ITYQCMELNFYKIPD---NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TEEECCSSCCSSCCS---SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCccccCC---Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeC
Confidence            445556555555432   11  245677777777777666666666777777777776665 444555666666666666


Q ss_pred             cCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccc-cccHHHHhcCCCCCEEeCCCCCCC
Q 035852          271 SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG-RISSVLLENLSSIQSLDLSFNELE  349 (960)
Q Consensus       271 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~Ls~n~l~  349 (960)
                      ++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+| ..++++++|++|++++|.++
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCC
T ss_pred             cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccc
Confidence            6666665555666666666666666666665544446666666666666666653 234 44555666666666666555


Q ss_pred             cccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-
Q 035852          350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-  428 (960)
Q Consensus       350 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-  428 (960)
                      +..+..++.+++|+.                          ..+.+++++|.+++..+..+... +|+.|++++|.... 
T Consensus       163 ~~~~~~~~~l~~L~~--------------------------~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~  215 (570)
T 2z63_A          163 SIYCTDLRVLHQMPL--------------------------LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN  215 (570)
T ss_dssp             EECGGGGHHHHTCTT--------------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT
T ss_pred             eecHHHccchhccch--------------------------hhhhcccCCCCceecCHHHhccC-cceeEeccccccccc
Confidence            444444444433310                          01345555555554444444333 45555555543221 


Q ss_pred             CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccc
Q 035852          429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLH  508 (960)
Q Consensus       429 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  508 (960)
                      .++..+..++.++...+....+.         ....          +.......+..+.+                    
T Consensus       216 ~~~~~~~~l~~l~~~~l~~~~~~---------~~~~----------l~~~~~~~~~~l~~--------------------  256 (570)
T 2z63_A          216 VMKTCIQGLAGLEVHRLVLGEFR---------NEGN----------LEKFDKSALEGLCN--------------------  256 (570)
T ss_dssp             HHHHHHHTTTTCEEEEEEEEECC---------CCSS----------CEECCTTTTGGGGG--------------------
T ss_pred             chhhhhcCccccceeeecccccc---------Cchh----------hhhcchhhhccccc--------------------
Confidence            12333334444443333221111         0000          01111111111111                    


Q ss_pred             cCccCcEEeccCC-CCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEc
Q 035852          509 SQNHLVNLDISDS-GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDL  587 (960)
Q Consensus       509 ~~~~L~~L~Ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~l  587 (960)
                       + .++.++++++ .+.+.+|.. +..+++|+.|++++|.+.+..+.+..+ +|+.|++++|.+.               
T Consensus       257 -l-~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~---------------  317 (570)
T 2z63_A          257 -L-TIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG---------------  317 (570)
T ss_dssp             -S-EEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS---------------
T ss_pred             -c-chhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc---------------
Confidence             0 2334444444 333333333 244566666666666665322233333 4555555555443               


Q ss_pred             ccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe
Q 035852          588 SKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN  667 (960)
Q Consensus       588 s~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  667 (960)
                                                         .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|+
T Consensus       318 -----------------------------------~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          318 -----------------------------------QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG  358 (570)
T ss_dssp             -----------------------------------SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred             -----------------------------------ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence                                               1111  1233444444444444433332  344555555555555


Q ss_pred             ecccC--CcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCc-hhhcCCCCCCeEeecCCcCccc
Q 035852          668 LSGTL--PVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP-LELCHLAFLKILVLAGNNLSGT  744 (960)
Q Consensus       668 l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~  744 (960)
                      +++..  |..+..+++|++|++++|++++ +|..+. .+++|+.|++++|++.+..| ..+..+++|+.|++++|++++.
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  436 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  436 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred             cCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence            54332  4445555566666666666553 232233 46666666666666665544 3566777788888888887777


Q ss_pred             cCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccc-ccCc
Q 035852          745 IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFS-GEIP  823 (960)
Q Consensus       745 ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-g~ip  823 (960)
                      +|..+..++.|                                                     +.|+|++|+++ +.+|
T Consensus       437 ~~~~~~~l~~L-----------------------------------------------------~~L~l~~n~l~~~~~p  463 (570)
T 2z63_A          437 FNGIFNGLSSL-----------------------------------------------------EVLKMAGNSFQENFLP  463 (570)
T ss_dssp             CTTTTTTCTTC-----------------------------------------------------CEEECTTCEEGGGEEC
T ss_pred             chhhhhcCCcC-----------------------------------------------------cEEECcCCcCccccch
Confidence            66665554443                                                     78888888887 5788


Q ss_pred             hhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCc
Q 035852          824 AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEA  898 (960)
Q Consensus       824 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~  898 (960)
                      ..++.+++|+.|+|++|++++.+|..++++++|+.|++++|++++.+|..+.++++|+.|++++|+++|.+|...
T Consensus       464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            888889999999999999998889999999999999999999998888888999999999999999999988753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-47  Score=451.82  Aligned_cols=501  Identities=19%  Similarity=0.234  Sum_probs=308.3

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccc
Q 035852          112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLE  191 (960)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~  191 (960)
                      +++++|++++|.+++. .+..+..+++|++|+|++|++.+..|..++++++|++|++++|.++.+++             
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-------------   93 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-------------   93 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-------------
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-------------
Confidence            4688888888888764 55678888888888888888887777778888888888888887654432             


Q ss_pred             eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852          192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls  271 (960)
                                      ..+..+++|++|++++|++++.++..++++++|++|++++|.++...+|..++++++|++|+++
T Consensus        94 ----------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           94 ----------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             ----------------TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             ----------------hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence                            2445566666666666666666666677778888888888877632457777788888888888


Q ss_pred             CcccCCCCcccccCCCCC----CEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCC
Q 035852          272 DNNFQGPIPDTIQNWTSL----RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE  347 (960)
Q Consensus       272 ~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~  347 (960)
                      +|++++..+..++.+++|    ++|++++|.+++..|..+..+ +|+.|++++|..........+..++.++.+.+....
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence            888777667777777777    778888888877766666555 688888887754433222556666666655543322


Q ss_pred             CCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCC-cC
Q 035852          348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSEN-SI  426 (960)
Q Consensus       348 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l  426 (960)
                      +..        ...++.+                                ....+.     .+..+ .++.++++++ .+
T Consensus       237 ~~~--------~~~l~~~--------------------------------~~~~~~-----~l~~l-~l~~l~l~~~~~~  270 (570)
T 2z63_A          237 FRN--------EGNLEKF--------------------------------DKSALE-----GLCNL-TIEEFRLAYLDYY  270 (570)
T ss_dssp             CCC--------CSSCEEC--------------------------------CTTTTG-----GGGGS-EEEEEEEEETTEE
T ss_pred             ccC--------chhhhhc--------------------------------chhhhc-----ccccc-chhhhhhhcchhh
Confidence            110        0111000                                000000     01111 1334444444 44


Q ss_pred             CCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcc
Q 035852          427 SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW  506 (960)
Q Consensus       427 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  506 (960)
                      .+.+|..+..+++|++|++++|.+. .+|. .+..+ +|+                                        
T Consensus       271 ~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~-~L~----------------------------------------  307 (570)
T 2z63_A          271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNF-GWQ----------------------------------------  307 (570)
T ss_dssp             ESCSTTTTGGGTTCSEEEEESCEEC-SCCB-CCSCC-CCS----------------------------------------
T ss_pred             hhhchhhhcCcCcccEEEecCccch-hhhh-hhccC-Ccc----------------------------------------
Confidence            4445555555555555555555544 2221 11111 222                                        


Q ss_pred             cccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEE
Q 035852          507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLD  586 (960)
Q Consensus       507 ~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~  586 (960)
                              +|++++|.+. .+|.   ..+++|+.|++++|.+.+.                                   
T Consensus       308 --------~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~-----------------------------------  340 (570)
T 2z63_A          308 --------HLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNA-----------------------------------  340 (570)
T ss_dssp             --------EEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCB-----------------------------------
T ss_pred             --------EEeeccCccc-ccCc---ccccccCEEeCcCCccccc-----------------------------------
Confidence                    2222222111 1111   0122233333333222211                                   


Q ss_pred             cccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCC--CcCcCCCCCCcEEECC
Q 035852          587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL--PTSLGALSLLRSLHLR  664 (960)
Q Consensus       587 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~  664 (960)
                                                           .+.  ..+++|++|++++|++++..  |..+..+++|++|+++
T Consensus       341 -------------------------------------~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          341 -------------------------------------FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             -------------------------------------CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             -------------------------------------ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence                                                 111  22334444444444444322  3444555555555555


Q ss_pred             CCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc-c
Q 035852          665 NNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS-G  743 (960)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g  743 (960)
                      +|++++..+. +..+++|++|++++|++++..|...+..+++|++|++++|++.+..|..+..+++|+.|++++|+++ +
T Consensus       382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence            5555533322 5556666666666666655444322235666666666667666667777777888888888888887 5


Q ss_pred             ccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCc
Q 035852          744 TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIP  823 (960)
Q Consensus       744 ~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip  823 (960)
                      .+|..+..++.|                                                     +.|+|++|++++.+|
T Consensus       461 ~~p~~~~~l~~L-----------------------------------------------------~~L~l~~n~l~~~~~  487 (570)
T 2z63_A          461 FLPDIFTELRNL-----------------------------------------------------TFLDLSQCQLEQLSP  487 (570)
T ss_dssp             EECSCCTTCTTC-----------------------------------------------------CEEECTTSCCCEECT
T ss_pred             cchhhhhcccCC-----------------------------------------------------CEEECCCCccccCCh
Confidence            677666555444                                                     789999999998889


Q ss_pred             hhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852          824 AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK  872 (960)
Q Consensus       824 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~  872 (960)
                      ..++++++|+.|+|++|++++.+|..++++++|+.|++++|+++|.+|.
T Consensus       488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999999998888899999999999999999988875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-45  Score=433.93  Aligned_cols=415  Identities=19%  Similarity=0.218  Sum_probs=276.8

Q ss_pred             cEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeecc
Q 035852          393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYAS  471 (960)
Q Consensus       393 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~  471 (960)
                      ++|++++|.+++..+..++.+++|++|++++|.+++ ..|..+.++++|++|++++|++.+.++...+.++++|++|+++
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            444444444444444455666666666666666654 2445566666666676666665445554455555555555555


Q ss_pred             CccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCcccccc
Q 035852          472 RNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGE  551 (960)
Q Consensus       472 ~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  551 (960)
                      +|.++...+..+..                        +++|+.|++++|.+ +.+|..++..+++|++|++++|++++.
T Consensus       157 ~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          157 ALSLRNYQSQSLKS------------------------IRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             ETTCCEECTTTTTT------------------------CSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             CCcccccChhhhhc------------------------cccCceEecccCcc-cccchhhHhhcccccEEEccCCccccc
Confidence            55554443333333                        44444444444433 233444444455555555555555542


Q ss_pred             C----CCccccCCCCeEEcccCcCcCCCCC-------CCccCcEEEccccccccc--ccchhhcccCCCCcccEEecccc
Q 035852          552 I----PNLTEVSQLGTLDLSANNLSGQLPL-------LASNVMVLDLSKNKLSGS--ILHFVCHETNGTRLTQIINLEDN  618 (960)
Q Consensus       552 ~----~~l~~l~~L~~L~Ls~n~l~~~~p~-------~~~~L~~L~ls~n~l~~~--~~~~~~~~~~~~~~L~~L~Ls~n  618 (960)
                      .    +....+++|+.|++++|.+++..+.       .+.+++.+++++|.+.+.  ++......+..++.++.+++.++
T Consensus       212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  291 (549)
T 2z81_A          212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL  291 (549)
T ss_dssp             CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred             cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence            1    1223345555566655555443221       234556666666655442  11111223345667777777777


Q ss_pred             cccCC-----CCCcccCCCcccEEECCCCccccCCCcCc-CCCCCCcEEECCCCeecccCC---cCCcCCCCCcEEecCC
Q 035852          619 LLAGE-----IPDCWMNWRYLLVLRLDNNKFTGKLPTSL-GALSLLRSLHLRNNNLSGTLP---VSLGNCTELETIDIGE  689 (960)
Q Consensus       619 ~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~  689 (960)
                      .+...     ++..+...++|++|++++|++. .+|..+ ..+++|++|++++|++++.+|   ..++.+++|++|++++
T Consensus       292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  370 (549)
T 2z81_A          292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ  370 (549)
T ss_dssp             BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred             ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence            65432     2222334568999999999987 777766 578999999999999988764   4478889999999999


Q ss_pred             CcccccCch--HHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852          690 NEFSGNVPA--WIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI  767 (960)
Q Consensus       690 N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~  767 (960)
                      |++++ +|.  .....+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.++                  
T Consensus       371 N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------------  429 (549)
T 2z81_A          371 NHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------------  429 (549)
T ss_dssp             SCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS------------------
T ss_pred             Ccccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh------------------
Confidence            99984 432  23347899999999999998 67888888999999999999986 333322                  


Q ss_pred             cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852          768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP  847 (960)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP  847 (960)
                                                           .+.|+.|||++|++++.+    +.+++|+.|||++|+++ .||
T Consensus       430 -------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip  467 (549)
T 2z81_A          430 -------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLP  467 (549)
T ss_dssp             -------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCC
T ss_pred             -------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCC
Confidence                                                 123589999999999754    47899999999999998 788


Q ss_pred             hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      + .+.+++|+.|||++|++++.+|..++++++|++|++++|++.|.+|..
T Consensus       468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          468 D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            7 578999999999999999999999999999999999999999988853

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6e-44  Score=423.19  Aligned_cols=482  Identities=17%  Similarity=0.195  Sum_probs=340.4

Q ss_pred             eecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccC
Q 035852          193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD  272 (960)
Q Consensus       193 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~  272 (960)
                      .+.+++.++.++.   .+  .++|++|++++|++++..+..|.++++|++|++++|+++ +..|..+.++++|++|++++
T Consensus        10 c~~~~~~l~~ip~---~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A           10 CDGRSRSFTSIPS---GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             EECTTSCCSSCCS---CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             EECCCCccccccc---cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCC
Confidence            3455555555432   11  267888888888888888888888888888888888887 66667888888888888888


Q ss_pred             cccCCCCcccccCCCCCCEEeCCCCcCCCc-chhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852          273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK  351 (960)
Q Consensus       273 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~  351 (960)
                      |++++..|..++++++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...+.++++|++|++++|.+++.
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            888877777788888888888888888763 5667888888999999888866677656788888899999999888888


Q ss_pred             cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhh-hcCCCCCCEEecCCCcCCCCC
Q 035852          352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ-IGKFKVLNSVDLSENSISGQV  430 (960)
Q Consensus       352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~  430 (960)
                      .|..+..+++|++|++++|.+..                               +|.. +..+++|++|++++|.+++..
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~-------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~  212 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAF-------------------------------LLEIFADILSSVRYLELRDTNLARFQ  212 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTT-------------------------------HHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred             ChhhhhccccCceEecccCcccc-------------------------------cchhhHhhcccccEEEccCCcccccc
Confidence            88888888877666665554432                               2222 234555555555555555421


Q ss_pred             --c-ccccCCCCCcEEecCCcccccccchh---hhcCCCCCcEeeccCccccccCC------CCCcccccceEEeccccc
Q 035852          431 --P-WSLGKLSSLRYLDISNNQLNGTVSEI---HFANLSSLTFFYASRNSLTLKAN------PNWVPVFQLEELDLRSCY  498 (960)
Q Consensus       431 --p-~~l~~l~~L~~L~L~~n~l~~~i~~~---~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~l~~~~  498 (960)
                        | .....+++|+.|++++|.+.+..+..   .+..+++|+.+++++|.+.....      ..+....+++.+++.++.
T Consensus       213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  292 (549)
T 2z81_A          213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH  292 (549)
T ss_dssp             CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred             ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence              1 11223455666666666555433221   12345556666666665543221      122344556666666655


Q ss_pred             CCC-----CCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC----CccccCCCCeEEcccC
Q 035852          499 LGP-----PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP----NLTEVSQLGTLDLSAN  569 (960)
Q Consensus       499 l~~-----~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~l~~l~~L~~L~Ls~n  569 (960)
                      +..     ..+..+....+|+.|++++|.+ +.+|..++..+++|++|++++|++++.+|    .+..+++|++|++++|
T Consensus       293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          293 IPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             CSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred             cchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence            432     1222334456777777777776 46777766667777777777777766542    2445555666666665


Q ss_pred             cCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCC
Q 035852          570 NLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP  649 (960)
Q Consensus       570 ~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  649 (960)
                      ++++..+                       ....+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|
T Consensus       372 ~l~~~~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~  426 (549)
T 2z81_A          372 HLRSMQK-----------------------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK  426 (549)
T ss_dssp             CCCCHHH-----------------------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCC
T ss_pred             ccccccc-----------------------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-ccc
Confidence            5543211                       0112445788899999999888 57888899999999999999998 455


Q ss_pred             cCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCC
Q 035852          650 TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA  729 (960)
Q Consensus       650 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  729 (960)
                      ..+.  ++|++|++++|++++.+    ..+++|++|++++|+++ .+|.. . .+++|++|++++|++++.+|..+..++
T Consensus       427 ~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          427 TCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             TTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred             chhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCc
Confidence            5442  68999999999998643    57899999999999998 78874 3 699999999999999999999999999


Q ss_pred             CCCeEeecCCcCccccC
Q 035852          730 FLKILVLAGNNLSGTIP  746 (960)
Q Consensus       730 ~L~~L~Ls~N~l~g~ip  746 (960)
                      +|+.|++++|++++..|
T Consensus       498 ~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          498 SLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             ccCEEEecCCCccCCCc
Confidence            99999999999998877

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-43  Score=426.65  Aligned_cols=520  Identities=20%  Similarity=0.194  Sum_probs=330.8

Q ss_pred             CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852          214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD  293 (960)
Q Consensus       214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  293 (960)
                      +++++|+|++|+|+++++..|.++++|++|+|++|+++ +..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            35777777777777777777777777777777777776 55555677777777777777777765556677777777777


Q ss_pred             CCCCcCCCcchhhhcCCCCCCEEeeeCcccccc-ccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCccc
Q 035852          294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR-ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL  372 (960)
Q Consensus       294 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  372 (960)
                      +++|++++..+..|+++++|++|++++|.+++. +| ..++.+++|++|++++|++++..+..+..+.+++.        
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~--------  201 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------  201 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT--------
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCccccccccccccchhhhhh--------
Confidence            777777766666677777777777777776542 33 55666777777777777766655555544433311        


Q ss_pred             CCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCccccc
Q 035852          373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG  452 (960)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  452 (960)
                                        ....++++.|.++...+. ......+                        +.+++.+|....
T Consensus       202 ------------------~~~~~~ls~n~l~~i~~~-~~~~~~~------------------------~~l~l~~n~~~~  238 (635)
T 4g8a_A          202 ------------------LNLSLDLSLNPMNFIQPG-AFKEIRL------------------------HKLTLRNNFDSL  238 (635)
T ss_dssp             ------------------CCCEEECTTCCCCEECTT-TTTTCEE------------------------EEEEEESCCSSH
T ss_pred             ------------------hhhhhhcccCcccccCcc-cccchhh------------------------hhhhhhcccccc
Confidence                              113445555544422221 1122233                        344444443333


Q ss_pred             ccchhhhcCCCCCcEeeccCcccc------ccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCC
Q 035852          453 TVSEIHFANLSSLTFFYASRNSLT------LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT  526 (960)
Q Consensus       453 ~i~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~  526 (960)
                      .+....+..+..++...+..+...      ......+.....+....+..+.......                     .
T Consensus       239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------------------~  297 (635)
T 4g8a_A          239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD---------------------G  297 (635)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE---------------------E
T ss_pred             cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc---------------------c
Confidence            333333444444444433322111      1111112222222222222221110000                     0


Q ss_pred             CchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCC
Q 035852          527 IPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNG  606 (960)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~  606 (960)
                      + ...+....+++.+++.++.+... +.+.....++.|++.+|.+.+..+..+..                         
T Consensus       298 ~-~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-------------------------  350 (635)
T 4g8a_A          298 I-IDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKS-------------------------  350 (635)
T ss_dssp             C-TTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTT-------------------------
T ss_pred             h-hhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchh-------------------------
Confidence            0 01122334455555555544322 22333444555555555554443333334                         


Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccc--cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcE
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT--GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET  684 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  684 (960)
                         ++.+++..|......  ....+++|+.|++++|.+.  +..+..+..+.+|+.+++..|... .++..+..+++|+.
T Consensus       351 ---L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~  424 (635)
T 4g8a_A          351 ---LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEH  424 (635)
T ss_dssp             ---CCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCE
T ss_pred             ---hhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccc
Confidence               444444444443222  2345677777888777764  335555666778888888888876 34566777888888


Q ss_pred             EecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc-cccCccccccccchhccCCCC
Q 035852          685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS-GTIPTCISNFTAMATFLGSDS  763 (960)
Q Consensus       685 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~~l~~~~~~~~  763 (960)
                      ++++.|......+...+..+++++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..+..+++         
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~---------  495 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------  495 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---------
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc---------
Confidence            8888888776666665557888888888888888888888888999999999999754 345555554444         


Q ss_pred             cccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCc
Q 035852          764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS  843 (960)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  843 (960)
                                                                  |+.|||++|+|++.+|..|+++++|+.|+|++|+++
T Consensus       496 --------------------------------------------L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~  531 (635)
T 4g8a_A          496 --------------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  531 (635)
T ss_dssp             --------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             --------------------------------------------cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence                                                        489999999999999999999999999999999999


Q ss_pred             ccCchhhccCCCCCEEECcCCcccccCCCCCCCC-CCCCEEEcccCcceec
Q 035852          844 GRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL-VFLSHFNISYNNLSGE  893 (960)
Q Consensus       844 g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~l~ls~N~l~g~  893 (960)
                      +..|..|+.+++|+.|||++|++++.+|..+.++ ++|++|++++|+++..
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9889999999999999999999999999999988 7899999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-45  Score=439.69  Aligned_cols=475  Identities=16%  Similarity=0.236  Sum_probs=299.1

Q ss_pred             CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccC------C------CCcccccCCCCCCEEeCCCCcCCCcchh
Q 035852          238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ------G------PIPDTIQNWTSLRHLDLSSNHFSYLIPE  305 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  305 (960)
                      .+++.|+|+++.+. +.+|+.++++++|++|+|++|.+.      +      .+|...  +..|+ ++++.|.+.+.+|.
T Consensus        81 ~~V~~L~L~~~~l~-g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGAS-GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCE-EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccC-CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence            35677777777776 667777777777777777777551      1      122211  23333 44444444444443


Q ss_pred             hhcCC-CCCCEEeeeCccccccccHHHHhcCCCCCEEeCC--CCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHH
Q 035852          306 WLNKF-SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS--FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA  382 (960)
Q Consensus       306 ~l~~l-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  382 (960)
                      .+..+ ..+..+++....+.       ......++.+.+.  .|.+++ +|..++++++|++|++++|.++...+..   
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~---  225 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE---  225 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS---
T ss_pred             hHHHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccc---
Confidence            33211 11111111111110       0111223333333  467887 8888888888855555555544311000   


Q ss_pred             hhccCCCCcccEEEcCCCCCCCchhhhhc--CCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcc-ccc-ccchhh
Q 035852          383 IFSGCVSDVLESLDLSNTTLSGSLTNQIG--KFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ-LNG-TVSEIH  458 (960)
Q Consensus       383 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~i~~~~  458 (960)
                                ..+.-..+...+.+|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|. .
T Consensus       226 ----------~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~  294 (636)
T 4eco_A          226 ----------AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-D  294 (636)
T ss_dssp             ----------SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-H
T ss_pred             ----------cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-H
Confidence                      0000000001112888888  99999999999999999999999999999999999998 887 6665 2


Q ss_pred             hcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCch-hHhhcCCc
Q 035852          459 FANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPN-RFWKSITQ  537 (960)
Q Consensus       459 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~-~~~~~l~~  537 (960)
                      +..+.                                          .+..+++|++|++++|++. .+|. ..+..+++
T Consensus       295 ~~~L~------------------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~  331 (636)
T 4eco_A          295 WQALA------------------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK  331 (636)
T ss_dssp             HHHHH------------------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred             HHhhh------------------------------------------ccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence            32220                                          0011233444444444443 3443 12334445


Q ss_pred             ccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEeccc
Q 035852          538 FNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLED  617 (960)
Q Consensus       538 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~  617 (960)
                      |++|++++|+++|.+|.+..+                                                 ++|+.|++++
T Consensus       332 L~~L~L~~N~l~g~ip~~~~l-------------------------------------------------~~L~~L~L~~  362 (636)
T 4eco_A          332 LGMLECLYNQLEGKLPAFGSE-------------------------------------------------IKLASLNLAY  362 (636)
T ss_dssp             CCEEECCSCCCEEECCCCEEE-------------------------------------------------EEESEEECCS
T ss_pred             CCEEeCcCCcCccchhhhCCC-------------------------------------------------CCCCEEECCC
Confidence            555555555554444433333                                                 3444444444


Q ss_pred             ccccCCCCCcccCCCc-ccEEECCCCccccCCCcCcCCCC--CCcEEECCCCeecccCCcCCc-------CCCCCcEEec
Q 035852          618 NLLAGEIPDCWMNWRY-LLVLRLDNNKFTGKLPTSLGALS--LLRSLHLRNNNLSGTLPVSLG-------NCTELETIDI  687 (960)
Q Consensus       618 n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~l~-------~l~~L~~L~L  687 (960)
                      |+++ .+|..+..+++ |++|++++|+++ .+|..+..++  +|++|++++|++++.+|..+.       .+++|++|++
T Consensus       363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            4444 45556666666 777777777776 6666665544  677777777777777776666       6667777777


Q ss_pred             CCCcccccCchHHhhcCcccceeeeccccccccCchhhcC--------CCCCCeEeecCCcCccccCcccc--ccccchh
Q 035852          688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCH--------LAFLKILVLAGNNLSGTIPTCIS--NFTAMAT  757 (960)
Q Consensus       688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~--~l~~l~~  757 (960)
                      ++|+++ .+|..++..+++|++|++++|+++ .+|.....        +++|+.|++++|+++ .+|..+.  .++.   
T Consensus       441 s~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~---  514 (636)
T 4eco_A          441 SNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY---  514 (636)
T ss_dssp             CSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT---
T ss_pred             cCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC---
Confidence            777777 677766656777778888777777 45543322        238888899988888 6776654  4433   


Q ss_pred             ccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeec
Q 035852          758 FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNL  837 (960)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  837 (960)
                                                                        |+.|+|++|++++ +|..++++++|+.|+|
T Consensus       515 --------------------------------------------------L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          515 --------------------------------------------------LVGIDLSYNSFSK-FPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             --------------------------------------------------CCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred             --------------------------------------------------cCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence                                                              4788999999987 8888888999999988


Q ss_pred             ------CcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852          838 ------SHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       838 ------s~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                            ++|++.+.+|+.++++++|+.|||++|++ +.||..+.  +.|+.|++++|++.-
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence                  56889999999999999999999999999 79999877  799999999997763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=426.20  Aligned_cols=459  Identities=17%  Similarity=0.194  Sum_probs=335.8

Q ss_pred             CEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCC
Q 035852          290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG  369 (960)
Q Consensus       290 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  369 (960)
                      ++|++++|.++. +|..+.  ++|++|++++|.+++..+ ..+.++++|++|++++|++++..|..|+.+++|++|++  
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--   76 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL--   76 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC--
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEec--
Confidence            578999999985 566555  799999999999985444 78889999999999999998877888888888844444  


Q ss_pred             cccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-CCcccccCCCCCcEEecCCc
Q 035852          370 IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLDISNN  448 (960)
Q Consensus       370 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n  448 (960)
                                                  ++|.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|
T Consensus        77 ----------------------------s~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           77 ----------------------------SHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             ----------------------------CSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             ----------------------------CCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence                                        444444 34444  68899999999999887 47788888999999999998


Q ss_pred             ccccccchhhhcCCCCC--cEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCc-cCcEEeccCCCCcC
Q 035852          449 QLNGTVSEIHFANLSSL--TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN-HLVNLDISDSGIVD  525 (960)
Q Consensus       449 ~l~~~i~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~Ls~n~~~~  525 (960)
                      ++.+    ..+..+++|  +.|++++|.+..                      .+..|..+..+. ....+++++|.+.+
T Consensus       126 ~l~~----~~~~~l~~L~L~~L~l~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~  179 (520)
T 2z7x_B          126 HLEK----SSVLPIAHLNISKVLLVLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFH  179 (520)
T ss_dssp             SCCG----GGGGGGTTSCEEEEEEEECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred             ccch----hhccccccceeeEEEeecccccc----------------------cccccccccccccceEEEEeccCcchh
Confidence            8764    245555555  666666555410                      333444443333 23345666666666


Q ss_pred             CCchhHhhcCCcccEEEccCcc-------ccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccc
Q 035852          526 TIPNRFWKSITQFNYLSLSNNQ-------IHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILH  598 (960)
Q Consensus       526 ~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~  598 (960)
                      .++...+..+++|+.|++++|.       +.+.++.+..+++|+.|++++|.+++..+                     .
T Consensus       180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~---------------------~  238 (520)
T 2z7x_B          180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF---------------------I  238 (520)
T ss_dssp             CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH---------------------H
T ss_pred             hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH---------------------H
Confidence            6666666667777777777776       55555666666667777666665543211                     1


Q ss_pred             hhhcccCCCCcccEEecccccccCCCCCcc-----cCCCcccEEECCCCccccCCC-cCcCCC---CCCcEEECCCCeec
Q 035852          599 FVCHETNGTRLTQIINLEDNLLAGEIPDCW-----MNWRYLLVLRLDNNKFTGKLP-TSLGAL---SLLRSLHLRNNNLS  669 (960)
Q Consensus       599 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~l---~~L~~L~L~~N~l~  669 (960)
                      ...... ..+.|+.|++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.
T Consensus       239 ~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~  315 (520)
T 2z7x_B          239 RILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV  315 (520)
T ss_dssp             HHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence            111111 13467777777777777777777     7788888888888877  455 344443   56888888888876


Q ss_pred             ccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccc--cCchhhcCCCCCCeEeecCCcCccccCc
Q 035852          670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG--VFPLELCHLAFLKILVLAGNNLSGTIPT  747 (960)
Q Consensus       670 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  747 (960)
                      +..  .+..+++|++|++++|++++.+|.++. .+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|.
T Consensus       316 ~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~  392 (520)
T 2z7x_B          316 HML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK  392 (520)
T ss_dssp             CCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred             ccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence            322  125778888888888888877777775 68888888888888886  5667788899999999999999876775


Q ss_pred             c-ccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhh
Q 035852          748 C-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEI  826 (960)
Q Consensus       748 ~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l  826 (960)
                      . +..+                                                     ++|+.|++++|++++.+|..+
T Consensus       393 ~~~~~l-----------------------------------------------------~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          393 GDCSWT-----------------------------------------------------KSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             CSCCCC-----------------------------------------------------TTCCEEECCSSCCCGGGGGSC
T ss_pred             chhccC-----------------------------------------------------ccCCEEECcCCCCCcchhhhh
Confidence            4 3322                                                     335889999999998888776


Q ss_pred             hhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC-CCCCCCCCEEEcccCcceecCC
Q 035852          827 TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN-TVNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       827 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      .  ++|+.|||++|+++ .+|+.+..+++|+.|||++|+++ .+|.. +.++++|++|++++|++++..|
T Consensus       420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            5  78999999999998 78998889999999999999999 57776 8899999999999999988765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-42  Score=417.61  Aligned_cols=528  Identities=20%  Similarity=0.207  Sum_probs=338.2

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852          103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG  182 (960)
Q Consensus       103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~  182 (960)
                      +||+.+.  +.+++|||++|.++++ .+..|.++++|++|+|++|++.+..|.+|+++++|++|+|++|+++.++     
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-----  116 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-----  116 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-----
Confidence            4554442  4788999999998864 4567888999999999999888877788888888999888888776543     


Q ss_pred             cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852          183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL  262 (960)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  262 (960)
                                              +..|.++++|++|++++|+++++++..|+++++|++|++++|.++....|..++.+
T Consensus       117 ------------------------~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l  172 (635)
T 4g8a_A          117 ------------------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL  172 (635)
T ss_dssp             ------------------------GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             ------------------------HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc
Confidence                                    23456677777777777888877777888888899999998888744567788888


Q ss_pred             CCCCEEeccCcccCCCCcccccCCCCC----CEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCC
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQNWTSL----RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI  338 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L  338 (960)
                      ++|++|++++|++++..+..+..+.++    ..++++.|.+....+..+ ....++.+++.+|.....+....+..+..+
T Consensus       173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l  251 (635)
T 4g8a_A          173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGL  251 (635)
T ss_dssp             TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred             hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccc
Confidence            899999999998887777777665544    468888888877554433 444667788888876655555667777777


Q ss_pred             CEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCE
Q 035852          339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNS  418 (960)
Q Consensus       339 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  418 (960)
                      +...+..+......        .++..                                        ....+..+..+..
T Consensus       252 ~~~~l~~~~~~~~~--------~l~~~----------------------------------------~~~~~~~~~~l~~  283 (635)
T 4g8a_A          252 EVHRLVLGEFRNEG--------NLEKF----------------------------------------DKSALEGLCNLTI  283 (635)
T ss_dssp             EEEEEEEECCTTSC--------CCSCC----------------------------------------CTTTTGGGGGSEE
T ss_pred             cccccccccccccc--------ccccc----------------------------------------cccccccccchhh
Confidence            76655433221100        00000                                        0000111111111


Q ss_pred             EecCCCcCC---CCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecc
Q 035852          419 VDLSENSIS---GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR  495 (960)
Q Consensus       419 L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  495 (960)
                      ..+..+...   ..++..+..+.+++.+++.++.+.+..   .+.....|+.|++.+|.+.....               
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~---------------  345 (635)
T 4g8a_A          284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPT---------------  345 (635)
T ss_dssp             EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCC---------------
T ss_pred             hhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCc---------------
Confidence            111111110   011223334455556665555543221   12233333333333333221110               


Q ss_pred             cccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCC
Q 035852          496 SCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQL  575 (960)
Q Consensus       496 ~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~  575 (960)
                                                           ..++.|+.+++..|..... +....+++|+.+++++|.+.   
T Consensus       346 -------------------------------------~~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~---  384 (635)
T 4g8a_A          346 -------------------------------------LKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLS---  384 (635)
T ss_dssp             -------------------------------------CBCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCB---
T ss_pred             -------------------------------------ccchhhhhcccccccCCCC-cccccccccccchhhccccc---
Confidence                                                 0122333333333332211 11122223333333333221   


Q ss_pred             CCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCC
Q 035852          576 PLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL  655 (960)
Q Consensus       576 p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  655 (960)
                                        .                          .+..+..+..+.+|+++++..|...+ .+..+..+
T Consensus       385 ------------------~--------------------------~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l  419 (635)
T 4g8a_A          385 ------------------F--------------------------KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL  419 (635)
T ss_dssp             ------------------E--------------------------EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred             ------------------c--------------------------ccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence                              0                          01233344455667777777776653 44556667


Q ss_pred             CCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccc-ccCchhhcCCCCCCe
Q 035852          656 SLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH-GVFPLELCHLAFLKI  733 (960)
Q Consensus       656 ~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~  733 (960)
                      ++|+.+++.+|+.....+ ..+..+++++.++++.|++.+..|..+. .++.++.|++++|++. +.+|..+..+++|+.
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             ccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCE
Confidence            777777777777665443 4567777788888888887765555544 6778888888887644 456777888899999


Q ss_pred             EeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEc
Q 035852          734 LVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL  813 (960)
Q Consensus       734 L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  813 (960)
                      |+|++|++++.+|..|.++++|                                                     ++|+|
T Consensus       499 L~Ls~N~L~~l~~~~f~~l~~L-----------------------------------------------------~~L~L  525 (635)
T 4g8a_A          499 LDLSQCQLEQLSPTAFNSLSSL-----------------------------------------------------QVLNM  525 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTC-----------------------------------------------------CEEEC
T ss_pred             EECCCCccCCcChHHHcCCCCC-----------------------------------------------------CEEEC
Confidence            9999999988888777766555                                                     78999


Q ss_pred             cCCcccccCchhhhhhcccceeecCcccCcccCchhhccC-CCCCEEECcCCccccc
Q 035852          814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAM-ALLESLDFSSNRLEGE  869 (960)
Q Consensus       814 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~Ls~N~l~g~  869 (960)
                      ++|+|++..|..++.+++|++|||++|++++.+|+.+..+ ++|+.|+|++|.+++.
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999998888889999999999999999999999999888 6899999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.1e-44  Score=418.42  Aligned_cols=204  Identities=19%  Similarity=0.267  Sum_probs=163.8

Q ss_pred             CCCcccEEecccccccCCCC-CcccCC---CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCC
Q 035852          606 GTRLTQIINLEDNLLAGEIP-DCWMNW---RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE  681 (960)
Q Consensus       606 ~~~~L~~L~Ls~n~l~~~~p-~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  681 (960)
                      .++.|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+. + .+..+++|++|++++|++++.+|..++.+++
T Consensus       274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  349 (520)
T 2z7x_B          274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTE  349 (520)
T ss_dssp             CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred             cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence            355666666666666  344 333333   5688888888887632 2 1267788999999999998888888889999


Q ss_pred             CcEEecCCCcccc--cCchHHhhcCcccceeeeccccccccCchh-hcCCCCCCeEeecCCcCccccCccccccccchhc
Q 035852          682 LETIDIGENEFSG--NVPAWIGERFPRMIILILRSNKFHGVFPLE-LCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF  758 (960)
Q Consensus       682 L~~L~Ls~N~l~g--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~  758 (960)
                      |++|++++|++++  .+|..+. .+++|++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+.        
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------  420 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--------  420 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--------
T ss_pred             CCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--------
Confidence            9999999999885  5566665 7899999999999999866654 77889999999999999887776542        


Q ss_pred             cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecC
Q 035852          759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLS  838 (960)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls  838 (960)
                                                                     +.|+.|||++|+++ .+|..+..+++|+.|||+
T Consensus       421 -----------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          421 -----------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             -----------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             -----------------------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence                                                           13489999999999 899999999999999999


Q ss_pred             cccCcccCchh-hccCCCCCEEECcCCcccccCC
Q 035852          839 HNFFSGRIPEN-IGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       839 ~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                      +|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       453 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999 57776 8999999999999999998665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.7e-43  Score=425.61  Aligned_cols=153  Identities=21%  Similarity=0.264  Sum_probs=106.9

Q ss_pred             CCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcC--------CCCCCeEeecCCcCccccCcccc--
Q 035852          681 ELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCH--------LAFLKILVLAGNNLSGTIPTCIS--  750 (960)
Q Consensus       681 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~--  750 (960)
                      +|+.|++++|+++ .+|.+++..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~  750 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT  750 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence            5555555555555 455555444555666666666555 44433322        236777777777776 5665543  


Q ss_pred             ccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhc
Q 035852          751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR  830 (960)
Q Consensus       751 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~  830 (960)
                      .++                                                     +|+.|+|++|++++ +|..+++++
T Consensus       751 ~l~-----------------------------------------------------~L~~L~Ls~N~L~~-lp~~l~~L~  776 (876)
T 4ecn_A          751 TLP-----------------------------------------------------YLSNMDVSYNCFSS-FPTQPLNSS  776 (876)
T ss_dssp             TCT-----------------------------------------------------TCCEEECCSSCCSS-CCCGGGGCT
T ss_pred             cCC-----------------------------------------------------CcCEEEeCCCCCCc-cchhhhcCC
Confidence            333                                                     23677777777775 677777777


Q ss_pred             ccceeecCc------ccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceec
Q 035852          831 ELRSLNLSH------NFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGE  893 (960)
Q Consensus       831 ~L~~L~Ls~------N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~  893 (960)
                      +|+.|+|++      |++.+.+|..++++++|+.|+|++|++ +.||..+.  ++|+.|||++|++...
T Consensus       777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            777777765      888999999999999999999999999 79999876  6899999999988653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.1e-42  Score=404.66  Aligned_cols=464  Identities=18%  Similarity=0.201  Sum_probs=313.7

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEE
Q 035852          286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSI  365 (960)
Q Consensus       286 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  365 (960)
                      +...+++++++|.+++ +|..+.  ++|++|++++|.+++ ++...+.++++|++|++++|.+++..|..|..+++|++ 
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY-  104 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE-
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE-
Confidence            3344788888888886 455443  688888888888874 33367788888888888888887766777777777744 


Q ss_pred             EcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-CCcccccCCCCCcEEe
Q 035852          366 SLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLD  444 (960)
Q Consensus       366 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~  444 (960)
                                                   |++++|.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|+
T Consensus       105 -----------------------------L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~  152 (562)
T 3a79_B          105 -----------------------------LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG  152 (562)
T ss_dssp             -----------------------------EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred             -----------------------------EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence                                         444444444 34443  57778888888888775 3456777777788888


Q ss_pred             cCCcccccccchhhhcCCCCC--cEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCc-cCcEEeccCC
Q 035852          445 ISNNQLNGTVSEIHFANLSSL--TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN-HLVNLDISDS  521 (960)
Q Consensus       445 L~~n~l~~~i~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~Ls~n  521 (960)
                      +++|++.+.    .+..+++|  +.|++++|.+..                      .+..|..+..+. ..-.+++++|
T Consensus       153 L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n  206 (562)
T 3a79_B          153 LSAAKFRQL----DLLPVAHLHLSCILLDLVSYHI----------------------KGGETESLQIPNTTVLHLVFHPN  206 (562)
T ss_dssp             EECSBCCTT----TTGGGTTSCEEEEEEEESSCCC----------------------CSSSCCEEEECCEEEEEEEECSS
T ss_pred             cCCCccccC----chhhhhhceeeEEEeecccccc----------------------cccCcccccccCcceEEEEecCc
Confidence            777776531    23333333  555555554400                      344444444432 1124466666


Q ss_pred             CCcCCCchhHhhcCCcccEEEccCcc-----ccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccc
Q 035852          522 GIVDTIPNRFWKSITQFNYLSLSNNQ-----IHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSI  596 (960)
Q Consensus       522 ~~~~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~  596 (960)
                      .+.+.++...+..+++|+.+++++|+     +.+.++.+..++.|+.++++++.+.+                +.+.+..
T Consensus       207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~----------------~~~~~~~  270 (562)
T 3a79_B          207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW----------------KCSVKLF  270 (562)
T ss_dssp             SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH----------------HHHHHHH
T ss_pred             cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH----------------HHHHHHH
Confidence            66666666555666677777777664     22223334445555555555444321                1111111


Q ss_pred             cchhhcccCCCCcccEEecccccccCCCCCcc-----cCCCcccEEECCCCccccCCC-cCcCC---CCCCcEEECCCCe
Q 035852          597 LHFVCHETNGTRLTQIINLEDNLLAGEIPDCW-----MNWRYLLVLRLDNNKFTGKLP-TSLGA---LSLLRSLHLRNNN  667 (960)
Q Consensus       597 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~---l~~L~~L~L~~N~  667 (960)
                           ... ..++|+.|++++|.++|.+|..+     ..++.|+.++++.|.+  .+| ..+..   ..+|++|++++|.
T Consensus       271 -----~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          271 -----QFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             -----HHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             -----Hhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC
Confidence                 111 12467777777777777777766     6666777777777666  344 22222   2568888888888


Q ss_pred             ecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccc--cCchhhcCCCCCCeEeecCCcCcccc
Q 035852          668 LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG--VFPLELCHLAFLKILVLAGNNLSGTI  745 (960)
Q Consensus       668 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~i  745 (960)
                      +....  ....+++|++|++++|++++.+|.++. .+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+
T Consensus       343 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          343 FIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             ccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            75321  125778888888888888877777765 68888888888888886  34567888999999999999998767


Q ss_pred             Ccc-ccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCch
Q 035852          746 PTC-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPA  824 (960)
Q Consensus       746 p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~  824 (960)
                      |.. +..+                                                     ++|+.|+|++|++++.+|.
T Consensus       420 ~~~~~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          420 YDRTCAWA-----------------------------------------------------ESILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             SSCCCCCC-----------------------------------------------------TTCCEEECCSSCCCGGGGS
T ss_pred             ChhhhcCc-----------------------------------------------------ccCCEEECCCCCCCcchhh
Confidence            754 3322                                                     3358999999999988887


Q ss_pred             hhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC-CCCCCCCCEEEcccCcceecCCC
Q 035852          825 EITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN-TVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       825 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      .+.  ++|+.|||++|+++ .||+.+..+++|+.|||++|+++ .+|.. +..+++|+.|++++|++.+..|.
T Consensus       447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            665  78999999999998 78988889999999999999999 57776 89999999999999999987764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.2e-41  Score=396.46  Aligned_cols=462  Identities=19%  Similarity=0.226  Sum_probs=259.6

Q ss_pred             cEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeC
Q 035852          241 VTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS  320 (960)
Q Consensus       241 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  320 (960)
                      +++++++|.++  .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus        34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            44555555443  1333322  4555556665555555555566666666666666666655555666666666666666


Q ss_pred             ccccccccHHHHhcCCCCCEEeCCCCCCCc-ccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCC
Q 035852          321 NRLQGRISSVLLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN  399 (960)
Q Consensus       321 n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  399 (960)
                      |+++ .+|..   .+++|++|++++|.+++ .+|..++++++|++|++++|+++..                        
T Consensus       110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------------------------  161 (562)
T 3a79_B          110 NRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------------------------  161 (562)
T ss_dssp             SCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------------------------
T ss_pred             CcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------------------------
Confidence            6665 45522   56666666666666654 2345666666665555444444321                        


Q ss_pred             CCCCCchhhhhcCCCCC--CEEecCCCcC--CCCCcccccCCC-CCcEEecCCcccccccchhhhcCCCCCcEeeccCcc
Q 035852          400 TTLSGSLTNQIGKFKVL--NSVDLSENSI--SGQVPWSLGKLS-SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS  474 (960)
Q Consensus       400 n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~  474 (960)
                               .+..+++|  ++|++++|.+  ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|+
T Consensus       162 ---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  232 (562)
T 3a79_B          162 ---------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND  232 (562)
T ss_dssp             ---------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred             ---------chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence                     11222233  5555555555  555555554433 111345566665555555445555555555555542


Q ss_pred             ccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCC
Q 035852          475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN  554 (960)
Q Consensus       475 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  554 (960)
                      .....                   + ......+...+.|+.+++.++.+.+..                    +.+..+ 
T Consensus       233 ~~~~~-------------------l-~~~~~~l~~l~~L~~L~L~~~~l~~~~--------------------~~~~~~-  271 (562)
T 3a79_B          233 ENCQR-------------------L-MTFLSELTRGPTLLNVTLQHIETTWKC--------------------SVKLFQ-  271 (562)
T ss_dssp             TTHHH-------------------H-HHHHHHHHSCSSCEEEEEEEEEECHHH--------------------HHHHHH-
T ss_pred             cccch-------------------H-HHHHHHHhccCcceEEEecCCcCcHHH--------------------HHHHHH-
Confidence            10000                   0 000011222333333333333222110                    000000 


Q ss_pred             ccccCCCCeEEcccCcCcCCCCCCC-----ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCC-Ccc
Q 035852          555 LTEVSQLGTLDLSANNLSGQLPLLA-----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP-DCW  628 (960)
Q Consensus       555 l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l  628 (960)
                      ....++|++|++++|.++|.+|...     .+++                         .|+.++++.+.+  .+| ..+
T Consensus       272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~-------------------------~L~~~~~~~~~~--~~p~~~~  324 (562)
T 3a79_B          272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALK-------------------------SLMIEHVKNQVF--LFSKEAL  324 (562)
T ss_dssp             HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC-------------------------EEEEEEEEECCC--SSCHHHH
T ss_pred             hhhcccccEEEEeccEeeccccchhhhcccccch-------------------------heehhhccccee--ecChhhh
Confidence            0111234444444444444444322     2222                         222222222222  122 111


Q ss_pred             cC---CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccc--cCchHHhhc
Q 035852          629 MN---WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG--NVPAWIGER  703 (960)
Q Consensus       629 ~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~  703 (960)
                      ..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+.++++|++|++++|++++  .+|..+. .
T Consensus       325 ~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~  401 (562)
T 3a79_B          325 YSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-N  401 (562)
T ss_dssp             HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-T
T ss_pred             hhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-C
Confidence            11   135666666666654221  12556777777777777777677777777777777777777774  2233343 6


Q ss_pred             CcccceeeeccccccccCch-hhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcccc
Q 035852          704 FPRMIILILRSNKFHGVFPL-ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNI  782 (960)
Q Consensus       704 l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (960)
                      +++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.                                
T Consensus       402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--------------------------------  449 (562)
T 3a79_B          402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------------------------------  449 (562)
T ss_dssp             CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--------------------------------
T ss_pred             CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--------------------------------
Confidence            77777788887777775554 467788899999999998877665442                                


Q ss_pred             ccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchh-hccCCCCCEEEC
Q 035852          783 TEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN-IGAMALLESLDF  861 (960)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~L  861 (960)
                                             +.|+.|||++|+++ .||..++.+++|+.|||++|+++ .+|.. ++.+++|+.|++
T Consensus       450 -----------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          450 -----------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             -----------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred             -----------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence                                   12488999999998 89998889999999999999999 57776 899999999999


Q ss_pred             cCCcccccCC
Q 035852          862 SSNRLEGEIP  871 (960)
Q Consensus       862 s~N~l~g~iP  871 (960)
                      ++|++++..|
T Consensus       505 ~~N~~~c~c~  514 (562)
T 3a79_B          505 HDNPWDCTCP  514 (562)
T ss_dssp             CSCCBCCCHH
T ss_pred             cCCCcCCCcc
Confidence            9999998766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-39  Score=371.50  Aligned_cols=390  Identities=22%  Similarity=0.279  Sum_probs=248.5

Q ss_pred             CcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEee
Q 035852          390 DVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY  469 (960)
Q Consensus       390 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  469 (960)
                      +.|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..++++++|+.+++..|..            .++++|+
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~   77 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELE   77 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEE
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEE
Confidence            3468888888888 68888899999999999999999888998888887764444443321            3345566


Q ss_pred             ccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCcccc
Q 035852          470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH  549 (960)
Q Consensus       470 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (960)
                      +++|.++....    -.++|++|++++|.+.+ +|..   .++|+.|++++|++.+ +|..    .++|++|++++|+++
T Consensus        78 l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           78 LNNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             CTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCS
T ss_pred             ecCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCC
Confidence            66665554322    12466666676666665 4432   3677788888877754 3321    257888888888888


Q ss_pred             ccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc
Q 035852          550 GEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM  629 (960)
Q Consensus       550 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  629 (960)
                      + +|.+..+++|++|++++|++++ +|..+.+|++|++++|++++ +|     .+.++++|+.|++++|++++ +|... 
T Consensus       145 ~-lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~~-  214 (454)
T 1jl5_A          145 K-LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDLP-  214 (454)
T ss_dssp             S-CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred             C-CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence            6 6678888888888888888886 66667788888888888876 33     35678888888888888886 44432 


Q ss_pred             CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852          630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII  709 (960)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  709 (960)
                        ++|++|++++|+++ .+| .++.+++|++|++++|++++ +|..   +++|++|++++|++++ +|..    +++|++
T Consensus       215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~  281 (454)
T 1jl5_A          215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTF  281 (454)
T ss_dssp             --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCE
T ss_pred             --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCE
Confidence              57888888888887 677 47888888888888888884 5543   3788888888888884 6642    478888


Q ss_pred             eeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852          710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE  789 (960)
Q Consensus       710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (960)
                      |++++|++++. |.   ..++|+.|++++|++++ +|.    +                                     
T Consensus       282 L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~-------------------------------------  315 (454)
T 1jl5_A          282 LDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD----L-------------------------------------  315 (454)
T ss_dssp             EECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC----C-------------------------------------
T ss_pred             EECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC----C-------------------------------------
Confidence            88888888862 21   12678888888888864 221    1                                     


Q ss_pred             eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc-
Q 035852          790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG-  868 (960)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g-  868 (960)
                                     .++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|+.||+++|+++| 
T Consensus       316 ---------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          316 ---------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             ---------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC
T ss_pred             ---------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcC
Confidence                           0134778888888875 6654   467888888888887 4666   46778888888888887 


Q ss_pred             -cCCCCCCCC-------------CCCCEEEcccCccee--cCCCC
Q 035852          869 -EIPKNTVNL-------------VFLSHFNISYNNLSG--EVPDE  897 (960)
Q Consensus       869 -~iP~~l~~l-------------~~L~~l~ls~N~l~g--~iP~~  897 (960)
                       .+|.+++++             ++|++|++++|+++|  .||.+
T Consensus       373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             CCCCTTCCEEECCC-------------------------------
T ss_pred             CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence             778877777             889999999999998  88875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.6e-39  Score=365.54  Aligned_cols=258  Identities=23%  Similarity=0.305  Sum_probs=141.9

Q ss_pred             cccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecc
Q 035852          537 QFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE  616 (960)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls  616 (960)
                      +|++|++++|++++ +|.+..+++|++|++++|.+++ +|..+++|++|++++|++. .+|     .+..++.|+.|+++
T Consensus       174 ~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-----~~~~l~~L~~L~l~  245 (454)
T 1jl5_A          174 SLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELP-----ELQNLPFLTTIYAD  245 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC-----CCTTCTTCCEEECC
T ss_pred             cccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc-----ccCCCCCCCEEECC
Confidence            34444555554444 3445555566666666666654 4444556777777777666 344     24567888888888


Q ss_pred             cccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccC
Q 035852          617 DNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNV  696 (960)
Q Consensus       617 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  696 (960)
                      +|++++ +|..   .++|++|++++|++++ +|..   +++|++|++++|++++ +|..   .++|++|++++|++++ +
T Consensus       246 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i  312 (454)
T 1jl5_A          246 NNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-L  312 (454)
T ss_dssp             SSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-E
T ss_pred             CCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-c
Confidence            888875 4443   3688888999988885 5654   3788889999888886 2221   2578888888888874 3


Q ss_pred             chHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCC
Q 035852          697 PAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFP  776 (960)
Q Consensus       697 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  776 (960)
                      +.    ..++|++|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+                        
T Consensus       313 ~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l------------------------  356 (454)
T 1jl5_A          313 CD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LP------------------------  356 (454)
T ss_dssp             CC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CC------------------------
T ss_pred             cC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hh------------------------
Confidence            31    12578888888888886 5544   578888888888887 3554   11                        


Q ss_pred             CCccccccccccceEEEecccchhhhhhhccccEEEccCCcccc--cCchhhhhhcccceeecCcccCcccCchhhccCC
Q 035852          777 GKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG--EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA  854 (960)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  854 (960)
                                                   ++|+.|++++|++++  .+|.+++++        +.|.+.|.+|..   ++
T Consensus       357 -----------------------------~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~  396 (454)
T 1jl5_A          357 -----------------------------QNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQ  396 (454)
T ss_dssp             -----------------------------TTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------
T ss_pred             -----------------------------hhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cC
Confidence                                         234788888888888  788766543        457788888864   57


Q ss_pred             CCCEEECcCCcccc--cCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          855 LLESLDFSSNRLEG--EIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       855 ~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      +|+.||+++|+++|  .||.++      +.|.+.+|.+.+.+|..
T Consensus       397 ~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          397 NLKQLHVETNPLREFPDIPESV------EDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             ---------------------------------------------
T ss_pred             cCCEEECCCCcCCccccchhhH------hheeCcCcccCCccccC
Confidence            89999999999998  888764      55667888888877753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.5e-39  Score=354.46  Aligned_cols=293  Identities=27%  Similarity=0.464  Sum_probs=234.9

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CceEEEeCCCCCCcCCCccccccccccc--c
Q 035852           30 GCVESEREALLSFKQDLEDPSNRLATWIGDGDCCK--WAGVICDNFT--GHVLELHLGNPWEDDHGHQAKESSALVG--K  103 (960)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~g--~  103 (960)
                      .|.++|++||++||+++.||. .+++|..+++||.  |+||+|+..+  ++|++|+++++             .+.|  .
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-------------~l~~~~~   67 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------------NLPKPYP   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------------CCSSCEE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-------------CccCCcc
Confidence            599999999999999998886 7899976679998  9999998655  89999999986             7788  8


Q ss_pred             cCccccCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852          104 INPALLDFEHLIYLNLSY-NDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG  182 (960)
Q Consensus       104 i~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~  182 (960)
                      +|+.+.++++|++|++++ |.+.+. +|..++++++|++|+|++|++.+.+|..++++++|++|++++|.++..      
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------  140 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT------  140 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC------
T ss_pred             cChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc------
Confidence            999999999999999995 888874 899999999999999999999999999999999999999999876532      


Q ss_pred             cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCC-CCcEEeCCCCCCCCChhHHhhcC
Q 035852          183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFS-SLVTLDLSHNQFDNSLIATQLYG  261 (960)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~  261 (960)
                                             .+..+..+++|++|++++|++++..|..+.+++ +|++|++++|.++ +.+|..+..
T Consensus       141 -----------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~  196 (313)
T 1ogq_A          141 -----------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFAN  196 (313)
T ss_dssp             -----------------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGG
T ss_pred             -----------------------CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhC
Confidence                                   234455666666777777777666666777776 7777777777776 566777777


Q ss_pred             CCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852          262 LCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL  341 (960)
Q Consensus       262 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  341 (960)
                      ++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+| ..+..+++|++|
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L  273 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSL  273 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEE
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC-hHHhcCcCCCEE
Confidence            76 77777777777777777777777788888877777766554 6777778888888887777777 667777788888


Q ss_pred             eCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852          342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ  371 (960)
Q Consensus       342 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  371 (960)
                      ++++|++++.+|.. ..+++|+.+++++|+
T Consensus       274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            88888777777765 666777666666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.6e-38  Score=361.57  Aligned_cols=390  Identities=20%  Similarity=0.194  Sum_probs=259.4

Q ss_pred             cEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccC
Q 035852          393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR  472 (960)
Q Consensus       393 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~  472 (960)
                      +.++.+++.++ .+|. +  .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666665 3444 2  367888888888888777777888888888888888877677666677777777777777


Q ss_pred             ccccccCCCCCcccccceEEecccccCCCCCCcc--cccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccc
Q 035852          473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW--LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG  550 (960)
Q Consensus       473 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  550 (960)
                      |+++...+..+..+.+|++|++++|.+.+..+..  +..+++|++|++++|.+.+..|..++..+++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            7776665555555556666666665554433222  44555555555555555444444444444555555555554444


Q ss_pred             cCC-CccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCC---
Q 035852          551 EIP-NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD---  626 (960)
Q Consensus       551 ~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~---  626 (960)
                      ..+ .+..+.                                               ...++.+++++|.+.+..+.   
T Consensus       169 ~~~~~l~~l~-----------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~  201 (455)
T 3v47_A          169 ICEEDLLNFQ-----------------------------------------------GKHFTLLRLSSITLQDMNEYWLG  201 (455)
T ss_dssp             CCTTTSGGGT-----------------------------------------------TCEEEEEECTTCBCTTCSTTCTT
T ss_pred             cChhhhhccc-----------------------------------------------cccccccccccCcccccchhhcc
Confidence            333 122210                                               01222233333332222111   


Q ss_pred             -----cccCCCcccEEECCCCccccCCCcCcCCC---CCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCch
Q 035852          627 -----CWMNWRYLLVLRLDNNKFTGKLPTSLGAL---SLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPA  698 (960)
Q Consensus       627 -----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  698 (960)
                           .+..+++|++|++++|++++..|..+...   ++|+.|++++|.+.+...              ..+.+.+..+.
T Consensus       202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~  267 (455)
T 3v47_A          202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNF  267 (455)
T ss_dssp             HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTT
T ss_pred             ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccc
Confidence                 12234556666666666665555544332   566666666665543211              11111111111


Q ss_pred             HHh-hcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCC
Q 035852          699 WIG-ERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPG  777 (960)
Q Consensus       699 ~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  777 (960)
                      .+. -..++|+.|++++|++++.+|..+..+++|+.|++++|++++..|..++.++.|                      
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------  325 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL----------------------  325 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred             ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------
Confidence            111 024688889999999888888889999999999999999988777777665544                      


Q ss_pred             CccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCC
Q 035852          778 KFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLE  857 (960)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  857 (960)
                                                     +.|+|++|++++..|..++++++|+.|||++|++++.+|..++.+++|+
T Consensus       326 -------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          326 -------------------------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             -------------------------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -------------------------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence                                           8999999999988899999999999999999999999999999999999


Q ss_pred             EEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCccc
Q 035852          858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQF  900 (960)
Q Consensus       858 ~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~  900 (960)
                      .|||++|++++..|..+..+++|++|++++|+++|.+|.-..+
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            9999999999877777899999999999999999999975444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.5e-37  Score=354.39  Aligned_cols=393  Identities=20%  Similarity=0.230  Sum_probs=262.9

Q ss_pred             EEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCC
Q 035852          267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN  346 (960)
Q Consensus       267 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n  346 (960)
                      .++.++++++ .+|. +  .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|++++|
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            4445555544 3444 2  2566777777777766666667777777777777776665665456677777777777777


Q ss_pred             CCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhh--hcCCCCCCEEecCCC
Q 035852          347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ--IGKFKVLNSVDLSEN  424 (960)
Q Consensus       347 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n  424 (960)
                      .+++..|..+..+++|                              ++|++++|.+++.++..  +..+++|++|++++|
T Consensus        90 ~l~~~~~~~~~~l~~L------------------------------~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  139 (455)
T 3v47_A           90 QFLQLETGAFNGLANL------------------------------EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN  139 (455)
T ss_dssp             TTCEECTTTTTTCTTC------------------------------CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred             ccCccChhhccCcccC------------------------------CEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence            7776666677766666                              44444444444444433  666677777777777


Q ss_pred             cCCCCCccc-ccCCCCCcEEecCCcccccccchhhhcCC--CCCcEeeccCccccccCCCCCcccccceEEecccccCCC
Q 035852          425 SISGQVPWS-LGKLSSLRYLDISNNQLNGTVSEIHFANL--SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP  501 (960)
Q Consensus       425 ~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~  501 (960)
                      .+++..|.. +.++++|++|++++|++.+..+. .+..+  .+|+.+++++|.+.......+..                
T Consensus       140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------  202 (455)
T 3v47_A          140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------  202 (455)
T ss_dssp             BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------
T ss_pred             ccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccc----------------
Confidence            776665654 56677777777777766654433 23322  34444444444433222111000                


Q ss_pred             CCCcccccCccCcEEeccCCCCcCCCchhHhhcC--CcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCC
Q 035852          502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI--TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA  579 (960)
Q Consensus       502 ~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  579 (960)
                      .....+..+++|++|++++|++.+.+|..+....  ++|+.|++++|...+......             .+.+..+.  
T Consensus       203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~--  267 (455)
T 3v47_A          203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNF--  267 (455)
T ss_dssp             HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTT--
T ss_pred             cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh-------------hhccCccc--
Confidence            0000122345666667777666666665554332  556666666665443211111             11100000  


Q ss_pred             ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCc
Q 035852          580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR  659 (960)
Q Consensus       580 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  659 (960)
                                 .+.+          ...+.|+.+++++|++++.+|..+..+++|++|++++|++++..|..|+.+++|+
T Consensus       268 -----------~~~~----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          268 -----------TFKG----------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             -----------TTGG----------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             -----------cccc----------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence                       0000          1146788899999999988999999999999999999999988899999999999


Q ss_pred             EEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCC
Q 035852          660 SLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN  739 (960)
Q Consensus       660 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  739 (960)
                      +|++++|++++..|..|.++++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus       327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            999999999988889999999999999999999988787776 7999999999999999877777899999999999999


Q ss_pred             cCccccCc
Q 035852          740 NLSGTIPT  747 (960)
Q Consensus       740 ~l~g~ip~  747 (960)
                      ++++.+|.
T Consensus       406 ~l~~~~~~  413 (455)
T 3v47_A          406 PWDCSCPR  413 (455)
T ss_dssp             CBCCCTTT
T ss_pred             CcccCCCc
Confidence            99998884

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.8e-36  Score=340.89  Aligned_cols=346  Identities=18%  Similarity=0.230  Sum_probs=178.3

Q ss_pred             CCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCE
Q 035852          212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRH  291 (960)
Q Consensus       212 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  291 (960)
                      .+++|++|++++|++++.+   ++.+++|++|++++|.++ +. +  ++.+++|++|++++|++++ +|  ++.+++|++
T Consensus        62 ~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~-~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~  131 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLT-NL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY  131 (457)
T ss_dssp             GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS-CC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCc-ee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence            3344444444444444431   444455555555555544 21 1  4445555555555555543 22  455555555


Q ss_pred             EeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852          292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ  371 (960)
Q Consensus       292 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  371 (960)
                      |++++|++++. +  ++.+++|++|++++|...+.++   +..+++|++|++++|++++ +|  +..+++|         
T Consensus       132 L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L---------  193 (457)
T 3bz5_A          132 LNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-LD--VSQNKLL---------  193 (457)
T ss_dssp             EECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-CC--CTTCTTC---------
T ss_pred             EECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-ec--cccCCCC---------
Confidence            55555555542 1  4455555555555554333332   3445555555555555553 22  3444444         


Q ss_pred             cCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852          372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN  451 (960)
Q Consensus       372 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  451 (960)
                                           +.|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|++|++++|+++
T Consensus       194 ---------------------~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          194 ---------------------NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ---------------------CEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             ---------------------CEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence                                 3333333333332   24455666666666666664 34  555666666666666665


Q ss_pred             cccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhH
Q 035852          452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF  531 (960)
Q Consensus       452 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~  531 (960)
                      +..    ...+++|+.|+++.|                                      +|+.|++++|...+.+|   
T Consensus       247 ~~~----~~~l~~L~~L~l~~n--------------------------------------~L~~L~l~~n~~~~~~~---  281 (457)
T 3bz5_A          247 ELD----VSTLSKLTTLHCIQT--------------------------------------DLLEIDLTHNTQLIYFQ---  281 (457)
T ss_dssp             CCC----CTTCTTCCEEECTTC--------------------------------------CCSCCCCTTCTTCCEEE---
T ss_pred             CcC----HHHCCCCCEEeccCC--------------------------------------CCCEEECCCCccCCccc---
Confidence            421    233444444443332                                      22333333333333333   


Q ss_pred             hhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCccc
Q 035852          532 WKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQ  611 (960)
Q Consensus       532 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~  611 (960)
                                             ...+++|+.|++++|...+.+|....+|+.+++++                 ++.|+
T Consensus       282 -----------------------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-----------------~~~L~  321 (457)
T 3bz5_A          282 -----------------------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-----------------NPKLV  321 (457)
T ss_dssp             -----------------------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-----------------CTTCC
T ss_pred             -----------------------ccccccCCEEECCCCcccceeccCCCcceEechhh-----------------cccCC
Confidence                                   22334455555555554444444444455554443                 24567


Q ss_pred             EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCc
Q 035852          612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENE  691 (960)
Q Consensus       612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (960)
                      .|++++|++++. +  +.++++|+.|++++|++++        ++.|+.|++++|++.|.     .++..|+.+++++|+
T Consensus       322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~  385 (457)
T 3bz5_A          322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS  385 (457)
T ss_dssp             EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB
T ss_pred             EEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCc
Confidence            777777777763 2  6777777777777777764        24456666777777765     345567777777777


Q ss_pred             ccccCchHHhhcCcccceeeec
Q 035852          692 FSGNVPAWIGERFPRMIILILR  713 (960)
Q Consensus       692 l~g~ip~~~~~~l~~L~~L~L~  713 (960)
                      ++|.||..+.....++....-+
T Consensus       386 l~g~ip~~~~~~~~~~~~~~~~  407 (457)
T 3bz5_A          386 LTIAVSPDLLDQFGNPMNIEPG  407 (457)
T ss_dssp             EEEECCTTCBCTTSCCCEEEES
T ss_pred             EEEEcChhHhcccCceeeccCC
Confidence            7777776655434444443333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-36  Score=329.90  Aligned_cols=259  Identities=28%  Similarity=0.531  Sum_probs=243.0

Q ss_pred             CcccEEecccccccC--CCCCcccCCCcccEEECCC-CccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcE
Q 035852          608 RLTQIINLEDNLLAG--EIPDCWMNWRYLLVLRLDN-NKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET  684 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  684 (960)
                      ..++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            568889999999998  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCC-CCCeEeecCCcCccccCccccccccchhccCCCC
Q 035852          685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA-FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDS  763 (960)
Q Consensus       685 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~  763 (960)
                      |++++|++++.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|+++|.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999999999887 799999999999999999999999998 999999999999999998776543 3        


Q ss_pred             cccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCc
Q 035852          764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS  843 (960)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  843 (960)
                                                                   +.|+|++|++++.+|..++.+++|+.|+|++|+++
T Consensus       200 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          200 ---------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ---------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ---------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             ccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccccCCc
Q 035852          844 GRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLC  923 (960)
Q Consensus       844 g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c  923 (960)
                      +.+|. ++.+++|+.|||++|+++|.+|..+.+++.|++|++++|+++|.||...++.++....+.||+.+||.|+. .|
T Consensus       235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            88876 89999999999999999999999999999999999999999999999988999999999999999999886 57

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.5e-35  Score=337.48  Aligned_cols=360  Identities=20%  Similarity=0.189  Sum_probs=234.6

Q ss_pred             hhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcc
Q 035852          406 LTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP  485 (960)
Q Consensus       406 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  485 (960)
                      .+..++++++|++|++++|.+++. | .+..+++|++|++++|++++. +   +..+++|++|++++|.++...   +..
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~~---~~~  104 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNLD---VTP  104 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCceee---cCC
Confidence            334556666777777777766643 4 566667777777777766642 2   556666667776666666542   455


Q ss_pred             cccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEE
Q 035852          486 VFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLD  565 (960)
Q Consensus       486 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~  565 (960)
                      +++|++|++++|.+.+. +  +..+++|++|++++|++.+ ++   +..+++|++|++++|...+.+ .+..+++|+.|+
T Consensus       105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~  176 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLD  176 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc-ccccCCcCCEEE
Confidence            56666666666666553 2  5566666666666666655 22   345666667777666554444 355566666666


Q ss_pred             cccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccc
Q 035852          566 LSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT  645 (960)
Q Consensus       566 Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  645 (960)
                      +++|++++.....+++|+.|++++|++++.       .+..++.|+.|++++|++++ +|  +..+++|++|++++|+++
T Consensus       177 ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          177 CSFNKITELDVSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CCSSCCCCCCCTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             CCCCccceeccccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence            666666653322345566666666655542       24445666666666666665 34  556666666666666666


Q ss_pred             cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhh
Q 035852          646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLEL  725 (960)
Q Consensus       646 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l  725 (960)
                      +..   ++.+++|+.|++++|              +|+.|++++|++.|.+|.  . .+++|+.|++++|++.+.+|.  
T Consensus       247 ~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~--  304 (457)
T 3bz5_A          247 ELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC--  304 (457)
T ss_dssp             CCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC--
T ss_pred             CcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c-ccccCCEEECCCCcccceecc--
Confidence            432   344556666666554              456778888888777773  2 567777777777776666663  


Q ss_pred             cCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhh
Q 035852          726 CHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL  805 (960)
Q Consensus       726 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  805 (960)
                       ..+.|+.|++++|                                                                  
T Consensus       305 -~~~~L~~L~l~~~------------------------------------------------------------------  317 (457)
T 3bz5_A          305 -QAAGITELDLSQN------------------------------------------------------------------  317 (457)
T ss_dssp             -TTCCCSCCCCTTC------------------------------------------------------------------
T ss_pred             -CCCcceEechhhc------------------------------------------------------------------
Confidence             2344555555544                                                                  


Q ss_pred             ccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEc
Q 035852          806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNI  885 (960)
Q Consensus       806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~l  885 (960)
                      +.|+.|++++|+|+| +|  ++++++|+.||+++|+++| +       +.|+.|++++|+++|.     +++..|..+++
T Consensus       318 ~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l-------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l  381 (457)
T 3bz5_A          318 PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-F-------SSVGKIPALNNNFEAE-----GQTITMPKETL  381 (457)
T ss_dssp             TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-C-------TTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred             ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-c-------cccccccccCCcEEec-----ceeeecCcccc
Confidence            234889999999997 44  8899999999999999987 2       4566778999999987     35567888899


Q ss_pred             ccCcceecCCCC
Q 035852          886 SYNNLSGEVPDE  897 (960)
Q Consensus       886 s~N~l~g~iP~~  897 (960)
                      ++|+++|.||..
T Consensus       382 ~~N~l~g~ip~~  393 (457)
T 3bz5_A          382 TNNSLTIAVSPD  393 (457)
T ss_dssp             BTTBEEEECCTT
T ss_pred             ccCcEEEEcChh
Confidence            999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-33  Score=326.00  Aligned_cols=345  Identities=24%  Similarity=0.345  Sum_probs=207.6

Q ss_pred             CCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEE
Q 035852          413 FKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEEL  492 (960)
Q Consensus       413 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  492 (960)
                      +++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+   +..+++|++|++++|.++....            
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~------------  107 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP------------  107 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG------------
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh------------
Confidence            3455666666665552 33 35555666666666666553322   4555555555555554443221            


Q ss_pred             ecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCc
Q 035852          493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS  572 (960)
Q Consensus       493 ~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~  572 (960)
                                    +..+++|++|++++|.+.+. +.  +..+++|++|++++|.+.+ ++.+..+++|+.|+++ |.+.
T Consensus       108 --------------~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~  168 (466)
T 1o6v_A          108 --------------LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVT  168 (466)
T ss_dssp             --------------GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCC
T ss_pred             --------------hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-Cccc
Confidence                          33334444444444444332 11  3445556666666665553 2335555555555553 2222


Q ss_pred             CCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCc
Q 035852          573 GQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSL  652 (960)
Q Consensus       573 ~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  652 (960)
                      +..                           .+.+++.|+.|++++|.+++.  ..+..+++|++|++++|.+++..|  +
T Consensus       169 ~~~---------------------------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  217 (466)
T 1o6v_A          169 DLK---------------------------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L  217 (466)
T ss_dssp             CCG---------------------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             Cch---------------------------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence            111                           123345555555555555432  235666677777777777765444  5


Q ss_pred             CCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCC
Q 035852          653 GALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK  732 (960)
Q Consensus       653 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  732 (960)
                      +.+++|+.|++++|++++.  +.+..+++|++|++++|++++..|  +. .+++|+.|++++|++++..+  +..+++|+
T Consensus       218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  290 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALT  290 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccC
Confidence            6667777777777777642  346677777777777777775433  33 57777777777777775444  66777788


Q ss_pred             eEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEE
Q 035852          733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID  812 (960)
Q Consensus       733 ~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  812 (960)
                      .|++++|++++..|  ++.                                                     +++|+.|+
T Consensus       291 ~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L~  315 (466)
T 1o6v_A          291 NLELNENQLEDISP--ISN-----------------------------------------------------LKNLTYLT  315 (466)
T ss_dssp             EEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCSEEE
T ss_pred             eEEcCCCcccCchh--hcC-----------------------------------------------------CCCCCEEE
Confidence            88888777765333  222                                                     23347788


Q ss_pred             ccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852          813 LSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       813 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                      |++|++++..|  ++.+++|+.|++++|.+++.  +.++++++|+.|++++|++++.+|  +.+++.|+.|++++|++++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88888876655  67778888888888887764  357778888888888888887776  6777888888888888776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.1e-33  Score=324.62  Aligned_cols=297  Identities=26%  Similarity=0.351  Sum_probs=221.8

Q ss_pred             CCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCC-CCccCcEEEcccccccccccchhhcccCCCCcccEE
Q 035852          535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQII  613 (960)
Q Consensus       535 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L  613 (960)
                      +++|++|++++|.+.+..+ +..+++|++|++++|.+++..+. .+++|++|++++|++.+. +     .+..+++|+.|
T Consensus        89 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L  161 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-S-----ALSGLTSLQQL  161 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC-G-----GGTTCTTCSEE
T ss_pred             cccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC-h-----hhccCCcccEe
Confidence            3344444444444433332 34444444444444444433221 134555555555555431 1     25568889999


Q ss_pred             ecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc
Q 035852          614 NLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS  693 (960)
Q Consensus       614 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (960)
                      +++ |.+.+..  .+.++++|++|++++|++++.  ..+..+++|++|++++|.+++..|  ++.+++|++|++++|+++
T Consensus       162 ~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          162 SFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             EEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence            986 5555433  388999999999999999853  358899999999999999997655  788999999999999998


Q ss_pred             ccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCC
Q 035852          694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDF  773 (960)
Q Consensus       694 g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~  773 (960)
                      + ++ .+. .+++|+.|++++|++++..|  +..+++|+.|++++|++++..|  +..+                     
T Consensus       235 ~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l---------------------  286 (466)
T 1o6v_A          235 D-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL---------------------  286 (466)
T ss_dssp             C-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC---------------------
T ss_pred             c-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC---------------------
Confidence            4 55 344 79999999999999997765  8899999999999999986433  3333                     


Q ss_pred             CCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccC
Q 035852          774 SFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAM  853 (960)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l  853 (960)
                                                      +.|+.|++++|++++..|  ++.+++|+.|+|++|++++..|  ++.+
T Consensus       287 --------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l  330 (466)
T 1o6v_A          287 --------------------------------TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL  330 (466)
T ss_dssp             --------------------------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred             --------------------------------CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence                                            345899999999997554  8999999999999999998776  8899


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCC
Q 035852          854 ALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDE  912 (960)
Q Consensus       854 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~  912 (960)
                      ++|+.|++++|++++.  ..++++++|+.|++++|+++|.+| -.++..+......+|+
T Consensus       331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred             ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence            9999999999999975  468899999999999999999888 3444455444455554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=326.44  Aligned_cols=324  Identities=17%  Similarity=0.131  Sum_probs=169.8

Q ss_pred             cccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCCcccE
Q 035852          537 QFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQI  612 (960)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~  612 (960)
                      +++.|++++|++++..+ .+..+++|++|++++|.+++..|..   +++|++|++++|++++..+    ..+.++++|+.
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~  108 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL----GVFTGLSNLTK  108 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT----TSSTTCTTCCE
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc----ccccCCCCCCE
Confidence            45555555555554443 3455555555555555554443322   1223333333333322111    11223444444


Q ss_pred             EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852          613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF  692 (960)
Q Consensus       613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (960)
                      |++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+.++++|+.|++++|++
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            44444444444444444444444444444444444444444444444444444444433333344444444444444444


Q ss_pred             cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCC
Q 035852          693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD  772 (960)
Q Consensus       693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~  772 (960)
                      .+..+..+. .+++|+.|++++|++.+.+|.......+|+.|++++|++++..+..+                       
T Consensus       189 ~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----------------------  244 (477)
T 2id5_A          189 NAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-----------------------  244 (477)
T ss_dssp             CEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----------------------
T ss_pred             cEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----------------------
Confidence            433222222 34444444444444444444443334444444444444442111122                       


Q ss_pred             CCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhcc
Q 035852          773 FSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA  852 (960)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~  852 (960)
                                                    ..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|..
T Consensus       245 ------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          245 ------------------------------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             ------------------------------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             ------------------------------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence                                          22344578888888888777777788888888888888888877888888


Q ss_pred             CCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCcc
Q 035852          853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPV  918 (960)
Q Consensus       853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~  918 (960)
                      +++|+.|||++|++++..|..+.++++|+.|++++|++.+..+....+.......+.|+...|+.|
T Consensus       295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            888888888888888766666777788888888888877654322112222233455666666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=311.22  Aligned_cols=309  Identities=20%  Similarity=0.205  Sum_probs=229.5

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852          103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG  182 (960)
Q Consensus       103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~  182 (960)
                      .+|..+.  +++++|+|++|.+++. .+..+..+++|++|+|++|.+.+..|..++++++|++|++++|.++.++..   
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---   98 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG---   98 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT---
T ss_pred             cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc---
Confidence            3444442  5899999999999875 678899999999999999999998899999999999999999988866543   


Q ss_pred             cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852          183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL  262 (960)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l  262 (960)
                      .+.++++|++|++++|.+....  +..+..+++|++|++++|.+++..+..|.++++|++|++++|.++ ...+..+..+
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l  175 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL  175 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTC
T ss_pred             cccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhccc
Confidence            3456788888888888777642  445677788888888888888777777888888888888888876 5556667778


Q ss_pred             CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD  342 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  342 (960)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|.++ .++...+..+++|++|+
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  254 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN  254 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEE
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeE
Confidence            88888888888877766667777888888888877777666666666667788888877777 55656677777777777


Q ss_pred             CCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecC
Q 035852          343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS  422 (960)
Q Consensus       343 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  422 (960)
                      +++|.+++..+..+..+++|                              ++|++++|.+++..|..+..+++|+.|+++
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          255 LSYNPISTIEGSMLHELLRL------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSSCCCEECTTSCTTCTTC------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             CCCCcCCccChhhccccccC------------------------------CEEECCCCccceECHHHhcCcccCCEEECC
Confidence            77777776555556666555                              444555555555555566666777777777


Q ss_pred             CCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852          423 ENSISGQVPWSLGKLSSLRYLDISNNQLN  451 (960)
Q Consensus       423 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  451 (960)
                      +|.+++..+..+..+++|++|++++|.+.
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            77766555555666666666666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=7.6e-32  Score=321.10  Aligned_cols=331  Identities=20%  Similarity=0.175  Sum_probs=264.2

Q ss_pred             CccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCC---CccCcEE
Q 035852          510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVL  585 (960)
Q Consensus       510 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L  585 (960)
                      +.+++.+++++|.+ +.+|..++..+++|++|++++|.+++..+ .+..+++|++|++++|.+++..|..   +++|++|
T Consensus        50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            34556666666655 44566666666777777777777766655 5666777777777777777666543   4667777


Q ss_pred             EcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852          586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN  665 (960)
Q Consensus       586 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  665 (960)
                      ++++|.+++..+    ..+.++++|+.|++++|.+++..|..+..+++|++|++++|.+++. +  ++.+++|+.|++++
T Consensus       129 ~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~  201 (597)
T 3oja_B          129 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSY  201 (597)
T ss_dssp             ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCS
T ss_pred             EeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhccc
Confidence            777777764322    2245688999999999999999998999999999999999999864 3  56788999999999


Q ss_pred             CeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcccc
Q 035852          666 NNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI  745 (960)
Q Consensus       666 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  745 (960)
                      |.+++.     ....+|+.|++++|.++ .+|..   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+
T Consensus       202 n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          202 NLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             SCCSEE-----ECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             Cccccc-----cCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence            998753     34568999999999998 45543   347899999999999973  67889999999999999999988


Q ss_pred             CccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchh
Q 035852          746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAE  825 (960)
Q Consensus       746 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~  825 (960)
                      |..++.++.|                                                     +.|+|++|++++ +|..
T Consensus       271 ~~~~~~l~~L-----------------------------------------------------~~L~Ls~N~l~~-l~~~  296 (597)
T 3oja_B          271 YHPFVKMQRL-----------------------------------------------------ERLYISNNRLVA-LNLY  296 (597)
T ss_dssp             SGGGTTCSSC-----------------------------------------------------CEEECTTSCCCE-EECS
T ss_pred             HHHhcCccCC-----------------------------------------------------CEEECCCCCCCC-CCcc
Confidence            8887766555                                                     899999999996 6888


Q ss_pred             hhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCc
Q 035852          826 ITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDS  905 (960)
Q Consensus       826 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~  905 (960)
                      ++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. |  +..++.|+.|++++|++++..+. ..+..+..
T Consensus       297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~  371 (597)
T 3oja_B          297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVAR  371 (597)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCT
T ss_pred             cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhh
Confidence            888999999999999999 6899999999999999999999864 3  66788999999999999987432 45677777


Q ss_pred             cccCCCCCccCcc
Q 035852          906 SSYIGDEYLCGPV  918 (960)
Q Consensus       906 ~~~~gn~~lcg~~  918 (960)
                      ..+.+++..|+.+
T Consensus       372 ~~~~~~~~~C~~~  384 (597)
T 3oja_B          372 PAVDDADQHCKID  384 (597)
T ss_dssp             TTBCCCCCCCCTT
T ss_pred             hccccccccCCcc
Confidence            8889999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=2.1e-31  Score=300.65  Aligned_cols=331  Identities=20%  Similarity=0.176  Sum_probs=258.4

Q ss_pred             CccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCC---CccCcEE
Q 035852          510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVL  585 (960)
Q Consensus       510 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L  585 (960)
                      +++++.|++++|.+ +.+|..++..+++|++|++++|.+++..+ .+..+++|++|++++|.+++..|..   +++|++|
T Consensus        44 l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            45566666666654 44566666667777777777777766555 5666777777777777777665543   4567777


Q ss_pred             EcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852          586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN  665 (960)
Q Consensus       586 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  665 (960)
                      ++++|+++...+    ..+.++++|+.|++++|++++..|..+..+++|++|++++|++++.   .+..+++|+.|++++
T Consensus       123 ~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          123 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  195 (390)
T ss_dssp             ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred             ECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence            777777663221    2245688999999999999988888899999999999999999854   366788999999999


Q ss_pred             CeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcccc
Q 035852          666 NNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI  745 (960)
Q Consensus       666 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  745 (960)
                      |.+++.     ...++|++|++++|++. .+|..   ..++|+.|++++|++++.  ..+..+++|+.|++++|.+++..
T Consensus       196 n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~  264 (390)
T 3o6n_A          196 NLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  264 (390)
T ss_dssp             SCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             cccccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence            998742     34468999999999998 45654   367999999999999864  57889999999999999999887


Q ss_pred             CccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchh
Q 035852          746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAE  825 (960)
Q Consensus       746 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~  825 (960)
                      |..+..++.|                                                     +.|+|++|++++ +|..
T Consensus       265 ~~~~~~l~~L-----------------------------------------------------~~L~L~~n~l~~-~~~~  290 (390)
T 3o6n_A          265 YHPFVKMQRL-----------------------------------------------------ERLYISNNRLVA-LNLY  290 (390)
T ss_dssp             SGGGTTCSSC-----------------------------------------------------CEEECCSSCCCE-EECS
T ss_pred             hhHccccccC-----------------------------------------------------CEEECCCCcCcc-cCcc
Confidence            8777665544                                                     899999999985 6777


Q ss_pred             hhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCc
Q 035852          826 ITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDS  905 (960)
Q Consensus       826 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~  905 (960)
                      ++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++. |  +..++.|+.|++++|++.+.-. ...+..+..
T Consensus       291 ~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~  365 (390)
T 3o6n_A          291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVAR  365 (390)
T ss_dssp             SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCT
T ss_pred             cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHh
Confidence            888999999999999998 5788899999999999999999854 4  6778999999999999987522 234556666


Q ss_pred             cccCCCCCccCcc
Q 035852          906 SSYIGDEYLCGPV  918 (960)
Q Consensus       906 ~~~~gn~~lcg~~  918 (960)
                      ..+.+++..|+.+
T Consensus       366 ~~~~~~~~~c~~~  378 (390)
T 3o6n_A          366 PAVDDADQHCKID  378 (390)
T ss_dssp             TTBCCCCSCCCTT
T ss_pred             hcccccCceeccc
Confidence            7788888888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.7e-31  Score=297.08  Aligned_cols=311  Identities=21%  Similarity=0.234  Sum_probs=227.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCcc-ccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccC
Q 035852          108 LLDFEHLIYLNLSYNDFKGIQIPR-FLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYD  186 (960)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  186 (960)
                      -..++++++|+++++.++.  +|. .+..+++|++|++++|.+.+..+..++++++|++|++++|.++.+++.   .+.+
T Consensus        41 ~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~  115 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---VFQN  115 (390)
T ss_dssp             SGGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT---TTTT
T ss_pred             ccccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH---HhcC
Confidence            3457899999999999885  554 468899999999999999888888999999999999999998876544   3567


Q ss_pred             CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCC
Q 035852          187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV  266 (960)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  266 (960)
                      +++|++|++++|.++.++.  ..+.++++|++|++++|.+++.++..+.++++|++|++++|.++ ..   .+..+++|+
T Consensus       116 l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~---~~~~l~~L~  189 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV---DLSLIPSLF  189 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC---CGGGCTTCS
T ss_pred             CCCCCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc---ccccccccc
Confidence            8889999999998886532  33578889999999999999888888899999999999999887 32   356678899


Q ss_pred             EEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCC
Q 035852          267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN  346 (960)
Q Consensus       267 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n  346 (960)
                      +|++++|.+++     +...++|++|++++|.+... |.  ...++|+.|++++|.+++.   ..+..+++|++|++++|
T Consensus       190 ~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n  258 (390)
T 3o6n_A          190 HANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN  258 (390)
T ss_dssp             EEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS
T ss_pred             eeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCccEEECCCC
Confidence            99999888763     34456889999999988765 32  2357889999999988743   46788889999999999


Q ss_pred             CCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcC
Q 035852          347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI  426 (960)
Q Consensus       347 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  426 (960)
                      .+++..|..+..+++|++|++++|+++.                               ++..+..+++|++|++++|++
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          259 ELEKIMYHPFVKMQRLERLYISNNRLVA-------------------------------LNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             CCCEEESGGGTTCSSCCEEECCSSCCCE-------------------------------EECSSSCCTTCCEEECCSSCC
T ss_pred             cCCCcChhHccccccCCEEECCCCcCcc-------------------------------cCcccCCCCCCCEEECCCCcc
Confidence            8888778888888888666666666543                               222233445555555555555


Q ss_pred             CCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCcccc
Q 035852          427 SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT  476 (960)
Q Consensus       427 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~  476 (960)
                      + .+|..+..+++|++|++++|+++.. +   +..+++|+.|++++|++.
T Consensus       308 ~-~~~~~~~~l~~L~~L~L~~N~i~~~-~---~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          308 L-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEE
T ss_pred             e-ecCccccccCcCCEEECCCCcccee-C---chhhccCCEEEcCCCCcc
Confidence            4 3344445555555555555554421 1   344455555555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.6e-30  Score=283.67  Aligned_cols=306  Identities=21%  Similarity=0.312  Sum_probs=193.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCC
Q 035852          108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL  187 (960)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l  187 (960)
                      +..+++|++|+++++.+..  ++ .++.+++|++|++++|++.+..+  +.++++|++|++++|.++.+     +.+..+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-----~~~~~l  109 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-----SALQNL  109 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----GGGTTC
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-----hHHcCC
Confidence            4567888999999888875  44 37788889999999888776544  88888889998888877654     346777


Q ss_pred             CccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852          188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF  267 (960)
Q Consensus       188 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  267 (960)
                      ++|++|++++|.+.+.+.    +..+++|++|++++|.....++ .+..+++|++|++++|.+. ...+  +..+++|++
T Consensus       110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYS  181 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSE
T ss_pred             CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCE
Confidence            778888888777766422    6677777777777775544443 3677777777777777765 2222  666777777


Q ss_pred             EeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCC
Q 035852          268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE  347 (960)
Q Consensus       268 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~  347 (960)
                      |++++|.+.+. +. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++ . +..+++|++|++++|.
T Consensus       182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LS-P-LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             EECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSC
T ss_pred             EEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Cc-c-hhcCCCCCEEECCCCc
Confidence            77777777643 22 6677777777777777766533  6667777777777777763 33 1 6667777777777776


Q ss_pred             CCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC
Q 035852          348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS  427 (960)
Q Consensus       348 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  427 (960)
                      +++.  ..+..+++|++|++++|+++..                                ..+..+++|++|++++|.++
T Consensus       255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--------------------------------~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          255 ISDI--NAVKDLTKLKMLNVGSNQISDI--------------------------------SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCCC--------------------------------GGGGGCTTCSEEECCSSCCC
T ss_pred             cCCC--hhHhcCCCcCEEEccCCccCCC--------------------------------hhhcCCCCCCEEECcCCcCC
Confidence            6642  3456666665555555554432                                12344445555555555554


Q ss_pred             CCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccc
Q 035852          428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL  475 (960)
Q Consensus       428 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l  475 (960)
                      +..|..+..+++|++|++++|++++..+   +..+++|++|++++|++
T Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred             CcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence            4444444445555555555555443322   34444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-30  Score=308.60  Aligned_cols=311  Identities=20%  Similarity=0.224  Sum_probs=228.2

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852          109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS  188 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~  188 (960)
                      ..+.+++.+++++|.+... .+..++.+++|++|+|++|.+.+..|..++++++|++|++++|.++.+++.   .+.+++
T Consensus        48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~  123 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---VFQNVP  123 (597)
T ss_dssp             GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCT
T ss_pred             ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH---HHcCCC
Confidence            3567899999999988863 344578899999999999999988888999999999999999988876554   346778


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL  268 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  268 (960)
                      +|++|++++|.++.++  +..+..+++|++|++++|.+++.++..|.++++|++|++++|.++ +.   .+..+++|++|
T Consensus       124 ~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~---~~~~l~~L~~L  197 (597)
T 3oja_B          124 LLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV---DLSLIPSLFHA  197 (597)
T ss_dssp             TCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BC---CGGGCTTCSEE
T ss_pred             CCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-Cc---Chhhhhhhhhh
Confidence            8888888888888653  234578888999999999998888888888999999999999887 33   25567888999


Q ss_pred             eccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852          269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL  348 (960)
Q Consensus       269 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l  348 (960)
                      ++++|.+.+     +...++|++|++++|.+....+.   ..++|+.|++++|.+++.   ..+..+++|++|++++|.+
T Consensus       198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l  266 (597)
T 3oja_B          198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL  266 (597)
T ss_dssp             ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred             hcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc
Confidence            998887763     34556888999998888765332   235788889988888753   4678888888899988888


Q ss_pred             CcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC
Q 035852          349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG  428 (960)
Q Consensus       349 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  428 (960)
                      .+..|..+..+++|+.|++++|.++.                               +|..+..+++|+.|++++|.++ 
T Consensus       267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------------l~~~~~~l~~L~~L~Ls~N~l~-  314 (597)
T 3oja_B          267 EKIMYHPFVKMQRLERLYISNNRLVA-------------------------------LNLYGQPIPTLKVLDLSHNHLL-  314 (597)
T ss_dssp             CEEESGGGTTCSSCCEEECTTSCCCE-------------------------------EECSSSCCTTCCEEECCSSCCC-
T ss_pred             CCCCHHHhcCccCCCEEECCCCCCCC-------------------------------CCcccccCCCCcEEECCCCCCC-
Confidence            88888888888888666666555542                               2333444555666666666655 


Q ss_pred             CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCcccc
Q 035852          429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT  476 (960)
Q Consensus       429 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~  476 (960)
                      .+|..+..+++|++|++++|.+.+.    .+..+++|+.|++++|++.
T Consensus       315 ~i~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          315 HVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCGGGHHHHTTCSEEECCSSCCCCC----CCCTTCCCSEEECCSSCEE
T ss_pred             ccCcccccCCCCCEEECCCCCCCCc----ChhhcCCCCEEEeeCCCCC
Confidence            4455555556666666666655432    1344555555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=7.7e-32  Score=295.27  Aligned_cols=279  Identities=17%  Similarity=0.207  Sum_probs=205.2

Q ss_pred             CCCCHHHHHHHHHhhhcC-CCCCCCCCCC----CCCCCCccccceeeCC--------CCCceEEEeCCCCCCcCCCcccc
Q 035852           29 VGCVESEREALLSFKQDL-EDPSNRLATW----IGDGDCCKWAGVICDN--------FTGHVLELHLGNPWEDDHGHQAK   95 (960)
Q Consensus        29 ~~~~~~~~~~ll~~k~~~-~~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~   95 (960)
                      ..+..+|++||++||+++ .|+.+.+.+|    ....++|.|.|+.|..        ...+|+.|+|+++          
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n----------   91 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV----------   91 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence            346678999999999988 4776667889    3457899999999952        3468888888875          


Q ss_pred             cccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCC
Q 035852           96 ESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGG  175 (960)
Q Consensus        96 ~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~  175 (960)
                         .+. .+|+.++++++|++|+|++|.++  .+|..++.+++|++|+|++|++. .+|..++++++|++|++++|.+..
T Consensus        92 ---~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~  164 (328)
T 4fcg_A           92 ---PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT  164 (328)
T ss_dssp             ---CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred             ---Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence               444 78888888999999999999888  38888888999999999999887 778888899999999998876544


Q ss_pred             CccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChh
Q 035852          176 LYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLI  255 (960)
Q Consensus       176 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  255 (960)
                      ..+..+..         .           .....+..+++|++|++++|+++ ..|..+.++++|++|++++|.++ + +
T Consensus       165 ~~p~~~~~---------~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~-l  221 (328)
T 4fcg_A          165 ELPEPLAS---------T-----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A-L  221 (328)
T ss_dssp             CCCSCSEE---------E-----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C-C
T ss_pred             ccChhHhh---------c-----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c-C
Confidence            33332221         0           01122345666777777777666 34445777777777777777775 2 4


Q ss_pred             HHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcC
Q 035852          256 ATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL  335 (960)
Q Consensus       256 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l  335 (960)
                      |..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+| ..++++
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L  300 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQL  300 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGS
T ss_pred             chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhc
Confidence            5567777777777777777777777777777777777777777777777777777777777777777777777 667777


Q ss_pred             CCCCEEeCCCCCC
Q 035852          336 SSIQSLDLSFNEL  348 (960)
Q Consensus       336 ~~L~~L~Ls~n~l  348 (960)
                      ++|+.+++..+.+
T Consensus       301 ~~L~~l~l~~~~~  313 (328)
T 4fcg_A          301 PANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCEEECCGGGS
T ss_pred             cCceEEeCCHHHH
Confidence            7777777776544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.2e-29  Score=277.13  Aligned_cols=303  Identities=24%  Similarity=0.366  Sum_probs=253.0

Q ss_pred             CceEEEeCCCCCCcCCCcccccccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCch
Q 035852           75 GHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIP  154 (960)
Q Consensus        75 ~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  154 (960)
                      .+++.++++++             .+ ..++ .+..+++|++|++++|.+++  ++. +..+++|++|++++|.+.+.  
T Consensus        44 ~~L~~L~l~~~-------------~i-~~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--  103 (347)
T 4fmz_A           44 ESITKLVVAGE-------------KV-ASIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--  103 (347)
T ss_dssp             TTCSEEECCSS-------------CC-CCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccEEEEeCC-------------cc-ccch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--
Confidence            46788888875             22 2343 48889999999999999986  455 89999999999999998863  


Q ss_pred             hhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCc
Q 035852          155 NQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV  234 (960)
Q Consensus       155 ~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  234 (960)
                      +.++++++|++|++++|.+..++.     +..+++|++|++++|.....   ...+..+++|++|++++|.+.+..+  +
T Consensus       104 ~~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~  173 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTP--I  173 (347)
T ss_dssp             GGGTTCTTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             hHHcCCCcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcCCchh--h
Confidence            369999999999999999876543     77899999999999965443   3348899999999999999998776  8


Q ss_pred             cCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCC
Q 035852          235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE  314 (960)
Q Consensus       235 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  314 (960)
                      ..+++|++|++++|.+. +. +. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+
T Consensus       174 ~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~  246 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIE-DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT  246 (347)
T ss_dssp             GGCTTCSEEECTTSCCC-CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ccCCCCCEEEccCCccc-cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence            89999999999999997 33 33 8899999999999999986544  8899999999999999998654  89999999


Q ss_pred             EEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccE
Q 035852          315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES  394 (960)
Q Consensus       315 ~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~  394 (960)
                      +|++++|.+++ +  ..+..+++|++|++++|.+++.  ..+..+++|                              +.
T Consensus       247 ~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L------------------------------~~  291 (347)
T 4fmz_A          247 WLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL------------------------------NS  291 (347)
T ss_dssp             EEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC------------------------------SE
T ss_pred             EEECCCCccCC-C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC------------------------------CE
Confidence            99999999984 4  3588999999999999999854  357777777                              66


Q ss_pred             EEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852          395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN  451 (960)
Q Consensus       395 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  451 (960)
                      |++++|.+++..+..++.+++|++|++++|.+++..|  +..+++|++|++++|.++
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            6666777776777888889999999999999987655  788999999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.6e-33  Score=324.19  Aligned_cols=381  Identities=20%  Similarity=0.148  Sum_probs=236.6

Q ss_pred             CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEe
Q 035852          438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLD  517 (960)
Q Consensus       438 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  517 (960)
                      ++|++|++++|+++.......+..+++|++|++++|.++....                    ..++..+..+++|++|+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~   62 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN   62 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence            4567788887777644433335666666666666665442210                    02344566667788888


Q ss_pred             ccCCCCcCCCchhHhhcCC----cccEEEccCccccc----cCC-CccccCCCCeEEcccCcCcCCCCC--------CCc
Q 035852          518 ISDSGIVDTIPNRFWKSIT----QFNYLSLSNNQIHG----EIP-NLTEVSQLGTLDLSANNLSGQLPL--------LAS  580 (960)
Q Consensus       518 Ls~n~~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~~-~l~~l~~L~~L~Ls~n~l~~~~p~--------~~~  580 (960)
                      +++|.+.+..+..+...++    +|++|++++|.++.    .++ .+..+++|++|++++|.+++..+.        ..+
T Consensus        63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            8887776655555555565    68888888888774    233 466777888888888877643221        123


Q ss_pred             cCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc-----CCCcccEEECCCCccccC----CCcC
Q 035852          581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM-----NWRYLLVLRLDNNKFTGK----LPTS  651 (960)
Q Consensus       581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~  651 (960)
                      +|++|++++|++++.....+...+..++.|+.|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            5777777777777655444445555567777777777776654333332     245777777777777653    4555


Q ss_pred             cCCCCCCcEEECCCCeecccC-----CcCCcCCCCCcEEecCCCccccc----CchHHhhcCcccceeeeccccccccCc
Q 035852          652 LGALSLLRSLHLRNNNLSGTL-----PVSLGNCTELETIDIGENEFSGN----VPAWIGERFPRMIILILRSNKFHGVFP  722 (960)
Q Consensus       652 l~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~l~~L~~L~L~~N~l~~~~p  722 (960)
                      +..+++|++|++++|++++..     +..+..+++|++|++++|++++.    ++..+. .+++|++|++++|++.+..+
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHH
Confidence            666777777777777776432     22233567777777777777643    455554 57777777777777765443


Q ss_pred             hhhcC-----CCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEeccc
Q 035852          723 LELCH-----LAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK  797 (960)
Q Consensus       723 ~~l~~-----l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (960)
                      ..+..     .++|+.|++++|.+++.....+.                                               
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-----------------------------------------------  334 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-----------------------------------------------  334 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-----------------------------------------------
T ss_pred             HHHHHHhccCCccceeeEcCCCCCchHHHHHHH-----------------------------------------------
Confidence            33322     25777777777776543111110                                               


Q ss_pred             chhhhhhhccccEEEccCCcccccCchhhhh-----hcccceeecCcccCcc----cCchhhccCCCCCEEECcCCcccc
Q 035852          798 TLTFKAVLRLLTNIDLSNNKFSGEIPAEITV-----LRELRSLNLSHNFFSG----RIPENIGAMALLESLDFSSNRLEG  868 (960)
Q Consensus       798 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l~g  868 (960)
                        .....++.|+.|||++|++++..+..+..     .+.|+.|+|++|.+++    .+|..+..+++|+.||+++|++++
T Consensus       335 --~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 --SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             --HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             --HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence              00112344577778877777666655554     5577778888887776    677777777778888888887775


Q ss_pred             c--------CCCCCCCCCCCCEEEcccCcce
Q 035852          869 E--------IPKNTVNLVFLSHFNISYNNLS  891 (960)
Q Consensus       869 ~--------iP~~l~~l~~L~~l~ls~N~l~  891 (960)
                      .        +|...   ..|+.|++..+...
T Consensus       413 ~~~~~l~~~l~~~~---~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          413 AGILQLVESVRQPG---CLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHHHTSTT---CCCCEEECTTCCCC
T ss_pred             HHHHHHHHHhccCC---cchhheeecccccC
Confidence            4        44432   34555555555444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=8.8e-29  Score=272.44  Aligned_cols=224  Identities=20%  Similarity=0.223  Sum_probs=145.1

Q ss_pred             cCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeec--ccCCcCCcCCCC
Q 035852          604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS--GTLPVSLGNCTE  681 (960)
Q Consensus       604 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~  681 (960)
                      +.++++|+.|++++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.++  +..|..+..+ +
T Consensus        98 ~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~  173 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K  173 (332)
T ss_dssp             STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred             hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence            344566666666666666 3444433  56777777777776555555677777777777777774  3556666666 7


Q ss_pred             CcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852          682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS  761 (960)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~  761 (960)
                      |++|++++|+++ .+|..+   .++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..++.       
T Consensus       174 L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-------  242 (332)
T 2ft3_A          174 LNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-------  242 (332)
T ss_dssp             CSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-------
T ss_pred             cCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-------
Confidence            777777777776 366543   256777777777777666666777777777777777776655544443333       


Q ss_pred             CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852          762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF  841 (960)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  841 (960)
                                                                    |+.|+|++|+++ .+|..++.+++|+.|+|++|+
T Consensus       243 ----------------------------------------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          243 ----------------------------------------------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             ----------------------------------------------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred             ----------------------------------------------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence                                                          367777777777 677777777777777777777


Q ss_pred             CcccCchhhcc------CCCCCEEECcCCccc--ccCCCCCCCCCCCCEEEcccCc
Q 035852          842 FSGRIPENIGA------MALLESLDFSSNRLE--GEIPKNTVNLVFLSHFNISYNN  889 (960)
Q Consensus       842 l~g~iP~~l~~------l~~L~~L~Ls~N~l~--g~iP~~l~~l~~L~~l~ls~N~  889 (960)
                      +++..+..+..      ...|+.|++++|.+.  +..|..+..++.|+.+++++|+
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            77655555544      255777777777776  4556666777777777777663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.1e-32  Score=313.38  Aligned_cols=115  Identities=18%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             cccEEecccccccCC----CCCcccCCCcccEEECCCCccccCCCcCcCC-----CCCCcEEECCCCeecc----cCCcC
Q 035852          609 LTQIINLEDNLLAGE----IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA-----LSLLRSLHLRNNNLSG----TLPVS  675 (960)
Q Consensus       609 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~  675 (960)
                      .|+.|++++|.+++.    ++..+..+++|++|++++|++++..+..+..     .++|++|++++|++++    .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            444555555544433    3444555667777777777766543333322     5677777777777775    56777


Q ss_pred             CcCCCCCcEEecCCCcccccCchHHhh----cCcccceeeeccccccccCch
Q 035852          676 LGNCTELETIDIGENEFSGNVPAWIGE----RFPRMIILILRSNKFHGVFPL  723 (960)
Q Consensus       676 l~~l~~L~~L~Ls~N~l~g~ip~~~~~----~l~~L~~L~L~~N~l~~~~p~  723 (960)
                      +..+++|++|++++|++++.-...+.+    ...+|+.|.+.++.+....+.
T Consensus       394 l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            777777777777777776432222221    233577777777666544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.2e-28  Score=269.32  Aligned_cols=295  Identities=20%  Similarity=0.300  Sum_probs=228.4

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccce
Q 035852          113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLEN  192 (960)
Q Consensus       113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~  192 (960)
                      ++++++++++.++.  +|..+.  ++|++|++++|.+.+..|..++++++|++|++++|.++.+.+.   .+.++++|++
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK---AFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG---GSTTCTTCCE
T ss_pred             cCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh---HhhCcCCCCE
Confidence            68999999998874  677664  7899999999998887788899999999999999988765332   4678889999


Q ss_pred             eecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC-ChhHHhhcCCCCCCEEecc
Q 035852          193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-SLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       193 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~Ls  271 (960)
                      |++++|.++.++..   +.  ++|++|++++|++++.++..+.++++|++|++++|.++. +..+..+..+ +|++|+++
T Consensus       107 L~L~~n~l~~l~~~---~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          107 LYISKNHLVEIPPN---LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             EECCSSCCCSCCSS---CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             EECCCCcCCccCcc---cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            99999988866432   22  789999999999999988889999999999999999852 2456677777 99999999


Q ss_pred             CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852          272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK  351 (960)
Q Consensus       272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~  351 (960)
                      +|++++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .
T Consensus       181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-B
T ss_pred             CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-e
Confidence            999985 666554  789999999999999888889999999999999999985444 67889999999999999998 7


Q ss_pred             cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC--CC
Q 035852          352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS--GQ  429 (960)
Q Consensus       352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~  429 (960)
                      +|..+..+++|++|++++|+++..+...+.......                        ....|+.|++++|.+.  +.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~------------------------~~~~l~~L~l~~N~~~~~~~  311 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV------------------------KRAYYNGISLFNNPVPYWEV  311 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS------------------------SSCCBSEEECCSSSSCGGGS
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHcccccccc------------------------ccccccceEeecCccccccc
Confidence            888899999998877777777655443322211111                        1345666666666655  44


Q ss_pred             CcccccCCCCCcEEecCCcc
Q 035852          430 VPWSLGKLSSLRYLDISNNQ  449 (960)
Q Consensus       430 ~p~~l~~l~~L~~L~L~~n~  449 (960)
                      .|..+..+++|+.+++++|+
T Consensus       312 ~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          312 QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGGTTBCCSTTEEC----
T ss_pred             Ccccccccchhhhhhccccc
Confidence            55566666677777766653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1e-27  Score=263.71  Aligned_cols=296  Identities=20%  Similarity=0.246  Sum_probs=226.4

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccce
Q 035852          113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLEN  192 (960)
Q Consensus       113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~  192 (960)
                      ++++++++++.++.  +|..+.  ++|++|++++|++++..+..++++++|++|++++|.++.+.+.   .+..+++|++
T Consensus        32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---AFAPLVKLER  104 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT---TTTTCTTCCE
T ss_pred             CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH---HhcCCCCCCE
Confidence            78899999988874  676554  6899999999998887777899999999999999988766443   3567888999


Q ss_pred             eecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC-ChhHHhhcCCCCCCEEecc
Q 035852          193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-SLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       193 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~Ls  271 (960)
                      |++++|.++.++..   +  .++|++|++++|.+++.++..+.++++|++|++++|.+.. +..+..+..+++|++|+++
T Consensus       105 L~Ls~n~l~~l~~~---~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          105 LYLSKNQLKELPEK---M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             EECCSSCCSBCCSS---C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EECCCCcCCccChh---h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            99999988865432   2  2789999999999998888888999999999999998852 2556778889999999999


Q ss_pred             CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852          272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK  351 (960)
Q Consensus       272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~  351 (960)
                      +|.++ .+|..+.  ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++ .
T Consensus       180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~  254 (330)
T 1xku_A          180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-K  254 (330)
T ss_dssp             SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS-S
T ss_pred             CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc-c
Confidence            99988 4565544  789999999999998888889999999999999999985444 67888999999999999988 7


Q ss_pred             cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC--C
Q 035852          352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG--Q  429 (960)
Q Consensus       352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~  429 (960)
                      +|..+..+++|++|++++|+++..+...+.....                        ....+.++.+++++|.+..  .
T Consensus       255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~------------------------~~~~~~l~~l~l~~N~~~~~~i  310 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY------------------------NTKKASYSGVSLFSNPVQYWEI  310 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC------------------------CTTSCCCSEEECCSSSSCGGGS
T ss_pred             CChhhccCCCcCEEECCCCcCCccChhhcCCccc------------------------ccccccccceEeecCccccccc
Confidence            7888888888877777777776544332221110                        0123566677777776642  4


Q ss_pred             CcccccCCCCCcEEecCCcc
Q 035852          430 VPWSLGKLSSLRYLDISNNQ  449 (960)
Q Consensus       430 ~p~~l~~l~~L~~L~L~~n~  449 (960)
                      .|..+..+++++.+++++|+
T Consensus       311 ~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          311 QPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CGGGGTTCCCGGGEEC----
T ss_pred             CccccccccceeEEEecccC
Confidence            45566677777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=7.3e-31  Score=313.89  Aligned_cols=413  Identities=14%  Similarity=0.076  Sum_probs=268.9

Q ss_pred             cCccccCCCCCCEEeCCCCCCC---CCCCccccC------------CCCCCCEEeCCCCcccCCchhhhcCC--CCCcEE
Q 035852          104 INPALLDFEHLIYLNLSYNDFK---GIQIPRFLG------------SMGNLRFLDLSGAGFVGMIPNQIGNL--SNLQYL  166 (960)
Q Consensus       104 i~~~l~~l~~L~~L~Ls~n~~~---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L  166 (960)
                      .+..+.++++|++|+++++...   + .+|..++            .+++|++|+|++|.+++..+..++..  .+|++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3455678899999999876321   1 1232222            78999999999999888777777764  449999


Q ss_pred             eCCCCCCCCCccCCcc-cccCCCccceeecCCCCCCCCCC--CcccccCCCCCCEEEccCCcCCCCCC----CCccCCCC
Q 035852          167 NLRPNYLGGLYVEDLG-WLYDLSLLENLDLSGVDLSKVSN--GPLVTNALRSLLVLQLAGCQLSHFPP----LSVANFSS  239 (960)
Q Consensus       167 ~L~~n~i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~  239 (960)
                      ++++|.-  .....+. ....+++|++|++++|.+++...  .+.....+++|++|++++|.+++...    ..+.++++
T Consensus       144 ~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          144 KLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             EEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             ECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            9998851  1222222 23478899999999998765421  23345678899999999998874433    33457788


Q ss_pred             CcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccC---CCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEE
Q 035852          240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ---GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL  316 (960)
Q Consensus       240 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  316 (960)
                      |++|++++|.+.  .++..+..+++|++|+++.+...   +..+..+..+++|+.|+++++. ...+|..+..+++|++|
T Consensus       222 L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          222 LVSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             CCEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEE
T ss_pred             CcEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEE
Confidence            999999988875  36788888899999988864333   3345567788888888888753 34467777788888889


Q ss_pred             eeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCC-----------cccCCcchhhHHHhhc
Q 035852          317 SLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG-----------IQLSHQKVSQVLAIFS  385 (960)
Q Consensus       317 ~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~  385 (960)
                      ++++|.+++......+..+++|++|+++++-..+.++.....+++|++|++++           +.++......+...  
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~--  376 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG--  376 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH--
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh--
Confidence            98888876544434467888888888884322333344446678888888883           45554444333222  


Q ss_pred             cCCCCcccEEEcCCCCCCCchhhhhcC-CCCCCEEecC----CCcCCCC-----CcccccCCCCCcEEecCCcc--cccc
Q 035852          386 GCVSDVLESLDLSNTTLSGSLTNQIGK-FKVLNSVDLS----ENSISGQ-----VPWSLGKLSSLRYLDISNNQ--LNGT  453 (960)
Q Consensus       386 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~p~~l~~l~~L~~L~L~~n~--l~~~  453 (960)
                         .++|++|+++.+.+++..+..++. +++|+.|+++    .|.+++.     ++..+..+++|++|+++.|.  +++.
T Consensus       377 ---~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          377 ---CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             ---CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             ---CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence               245778888777777766666655 7778888875    5556542     33335567777777776543  4444


Q ss_pred             cchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhh
Q 035852          454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWK  533 (960)
Q Consensus       454 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~  533 (960)
                      ........+++|+.|++++|+++...                       ++..+..+++|++|++++|.+.+.....+..
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~-----------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEG-----------------------LMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHH-----------------------HHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHH-----------------------HHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            33323334666666666666554321                       2233345556666666666654443444445


Q ss_pred             cCCcccEEEccCccccc
Q 035852          534 SITQFNYLSLSNNQIHG  550 (960)
Q Consensus       534 ~l~~L~~L~Ls~n~l~~  550 (960)
                      .+++|++|++++|+++.
T Consensus       511 ~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HCSSCCEEEEESCBCCT
T ss_pred             hcCccCeeECcCCcCCH
Confidence            56666666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=9.1e-29  Score=270.85  Aligned_cols=227  Identities=19%  Similarity=0.224  Sum_probs=196.5

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|+++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            367788888888887 67888888999999999999998 88888999999999999999998 7888899999999999


Q ss_pred             cCCCcccccCchHHh--------hcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhc
Q 035852          687 IGENEFSGNVPAWIG--------ERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF  758 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~  758 (960)
                      +++|++.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|..++.++.    
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~----  230 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK----  230 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT----
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC----
Confidence            999888888887764        13889999999999998 788889999999999999999884 5555554444    


Q ss_pred             cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecC
Q 035852          759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLS  838 (960)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls  838 (960)
                                                                       |+.|+|++|++.+.+|..++.+++|+.|+|+
T Consensus       231 -------------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          231 -------------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             -------------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             -------------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence                                                             4889999999999999999999999999999


Q ss_pred             cccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce
Q 035852          839 HNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS  891 (960)
Q Consensus       839 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~  891 (960)
                      +|++.+.+|..++++++|+.|||++|++.|.+|+.+++++.|+.++++.|.+.
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999998876543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=6.5e-27  Score=257.36  Aligned_cols=276  Identities=18%  Similarity=0.262  Sum_probs=165.6

Q ss_pred             CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852          214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD  293 (960)
Q Consensus       214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  293 (960)
                      +.+++|++++|++++.++..|.++++|++|++++|.++ +..|..+..+++|++|++++|+++ .+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            45666666666666666666666666666666666665 445666666666666666666665 3444333  5666666


Q ss_pred             CCCCcCCCcchhhhcCCCCCCEEeeeCccccc--cccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852          294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG--RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ  371 (960)
Q Consensus       294 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  371 (960)
                      +++|.+++..+..+.++++|++|++++|.+..  ..+ ..+..+++|++|++++|.++ .+|..+.  +           
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~-----------  192 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNIT-TIPQGLP--P-----------  192 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCC-SCCSSCC--T-----------
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccc-cCCcccc--c-----------
Confidence            66666666655566666666666666666542  222 44555666666666666555 2333221  2           


Q ss_pred             cCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852          372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN  451 (960)
Q Consensus       372 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  451 (960)
                                         +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus       193 -------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          193 -------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             -------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             -------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence                               3466777777776666677777778888888888777766667777778888888888776


Q ss_pred             cccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcC-CCchh
Q 035852          452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVD-TIPNR  530 (960)
Q Consensus       452 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~-~~~~~  530 (960)
                       .+|. .+..+++|++|++++|+++......|....                  .......++.+++++|++.. .++..
T Consensus       254 -~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~  313 (330)
T 1xku_A          254 -KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPS  313 (330)
T ss_dssp             -SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             -cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCcc
Confidence             5554 466777777777777777665555443210                  00112344555555555432 23334


Q ss_pred             HhhcCCcccEEEccCcc
Q 035852          531 FWKSITQFNYLSLSNNQ  547 (960)
Q Consensus       531 ~~~~l~~L~~L~Ls~n~  547 (960)
                      .+..+++++.+++++|+
T Consensus       314 ~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          314 TFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGTTCCCGGGEEC----
T ss_pred             ccccccceeEEEecccC
Confidence            45556666666666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=266.24  Aligned_cols=280  Identities=17%  Similarity=0.166  Sum_probs=219.5

Q ss_pred             ccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccE
Q 035852          557 EVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLV  636 (960)
Q Consensus       557 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  636 (960)
                      .++.....+++++.++......+++|++|++++|++++..+    ..+.++++|+.|++++|++++..|..+.++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            34444556677777765544456677888888887765322    24566889999999999999888888999999999


Q ss_pred             EECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCc--CCcCCCCCcEEecCCCc-ccccCchHHhhcCcccceeeec
Q 035852          637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPV--SLGNCTELETIDIGENE-FSGNVPAWIGERFPRMIILILR  713 (960)
Q Consensus       637 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~l~~L~~L~L~  713 (960)
                      |++++|++++..+..++.+++|++|++++|++++ +|.  .+.++++|++|++++|. +.+..|..+. .+++|++|+++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~  182 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEID  182 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECC
Confidence            9999999986544458889999999999999984 554  78889999999999984 5544445554 78999999999


Q ss_pred             cccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEE
Q 035852          714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT  793 (960)
Q Consensus       714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (960)
                      +|++++..|..+..+++|+.|++++|++. .+|..+                                            
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~--------------------------------------------  217 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF--------------------------------------------  217 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHH--------------------------------------------
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCccc-cchhhh--------------------------------------------
Confidence            99999888999999999999999999874 333221                                            


Q ss_pred             ecccchhhhhhhccccEEEccCCcccccCchhhh---hhcccceeecCcccCcc----cCchhhccCCCCCEEECcCCcc
Q 035852          794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEIT---VLRELRSLNLSHNFFSG----RIPENIGAMALLESLDFSSNRL  866 (960)
Q Consensus       794 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l  866 (960)
                              ...+++|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|+.++.+++|+.|||++|++
T Consensus       218 --------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          218 --------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             --------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred             --------hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence                    12245569999999999987666554   35668888888888887    5899999999999999999999


Q ss_pred             cccCCCC-CCCCCCCCEEEcccCcceecCCC
Q 035852          867 EGEIPKN-TVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       867 ~g~iP~~-l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      + .+|.. ++++++|++|++++|++.|..|.
T Consensus       290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             C-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            9 67777 48999999999999999998774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.4e-27  Score=255.79  Aligned_cols=234  Identities=21%  Similarity=0.224  Sum_probs=188.0

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCcccc--CCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG--KLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI  685 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (960)
                      +.++.|++++|+++...+..+.++++|++|++++|+++.  ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            345566666666664444456778888888888888763  23556667788888888888887 466778888888888


Q ss_pred             ecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcc-ccCccccccccchhccCCCCc
Q 035852          686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG-TIPTCISNFTAMATFLGSDSI  764 (960)
Q Consensus       686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~~~~~~~~  764 (960)
                      ++++|++++..+...+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++ .+|..+..++.          
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~----------  176 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN----------  176 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT----------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC----------
Confidence            8888888854432233378888899999998888888888889999999999999886 46666555444          


Q ss_pred             ccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcc
Q 035852          765 YTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG  844 (960)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  844 (960)
                                                                 |+.|+|++|++++..|..++.+++|+.|+|++|++++
T Consensus       177 -------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          177 -------------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             -------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             -------------------------------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence                                                       4899999999998889999999999999999999998


Q ss_pred             cCchhhccCCCCCEEECcCCcccccCCCCCCCC-CCCCEEEcccCcceecCC
Q 035852          845 RIPENIGAMALLESLDFSSNRLEGEIPKNTVNL-VFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       845 ~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~l~ls~N~l~g~iP  895 (960)
                      ..+..++.+++|+.|||++|++++.+|..+..+ +.|++|++++|++++..+
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            888789999999999999999999999999998 599999999999987543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.6e-27  Score=261.93  Aligned_cols=283  Identities=20%  Similarity=0.285  Sum_probs=173.9

Q ss_pred             CCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 035852           60 GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNL  139 (960)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L  139 (960)
                      ..+|.|.|+ |+-...+                        ..++|..+.  ++|++|++++|.+++. .+..++.+++|
T Consensus        27 ~~~C~~~~~-c~~~~~~------------------------l~~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L   78 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGS------------------------LNSIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNL   78 (353)
T ss_dssp             CCEECTTSE-EECCSTT------------------------CSSCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTC
T ss_pred             CCCCCCCeE-eeCCCCC------------------------ccccccccc--ccCcEEECCCCcCccc-CHHHhccCCCC
Confidence            567999988 7542222                        234555443  4788888888888763 34477888888


Q ss_pred             CEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEE
Q 035852          140 RFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL  219 (960)
Q Consensus       140 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L  219 (960)
                      ++|++++|++.+..|..++++++|++|++++|.++.++.                             ..+..+++|++|
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------------~~~~~l~~L~~L  129 (353)
T 2z80_A           79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-----------------------------SWFKPLSSLTFL  129 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-----------------------------HHHTTCTTCSEE
T ss_pred             CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-----------------------------hHhCCCccCCEE
Confidence            888888888887777778888888888887776553221                             123344444444


Q ss_pred             EccCCcCCCCCC-CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCc
Q 035852          220 QLAGCQLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH  298 (960)
Q Consensus       220 ~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  298 (960)
                      ++++|++++.++ ..+.++++|++|++++|.                        .+.+..+..++++++|++|++++|.
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------------------~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------------------TFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------------------SCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCc------------------------cccccCHHHccCCCCCCEEECCCCC
Confidence            444444444433 344445555555555442                        2333334445555555555555555


Q ss_pred             CCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccc---cCCCCCEEEcCCcccCCc
Q 035852          299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS---RFCNLRSISLSGIQLSHQ  375 (960)
Q Consensus       299 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~  375 (960)
                      +++..|..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+.   ....+             
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l-------------  251 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI-------------  251 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC-------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchh-------------
Confidence            55555555666666666666666654 44434445566666666666666544333222   22334             


Q ss_pred             chhhHHHhhccCCCCcccEEEcCCCCCCC----chhhhhcCCCCCCEEecCCCcCCCCCccc-ccCCCCCcEEecCCccc
Q 035852          376 KVSQVLAIFSGCVSDVLESLDLSNTTLSG----SLTNQIGKFKVLNSVDLSENSISGQVPWS-LGKLSSLRYLDISNNQL  450 (960)
Q Consensus       376 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  450 (960)
                                       +.++++++.+++    .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++
T Consensus       252 -----------------~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          252 -----------------KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             -----------------CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             -----------------hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence                             444444444443    46777888999999999999998 55555 58889999999999988


Q ss_pred             ccccc
Q 035852          451 NGTVS  455 (960)
Q Consensus       451 ~~~i~  455 (960)
                      .+..+
T Consensus       314 ~~~~~  318 (353)
T 2z80_A          314 DCSCP  318 (353)
T ss_dssp             CCCHH
T ss_pred             cCcCC
Confidence            86654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.5e-28  Score=290.61  Aligned_cols=398  Identities=12%  Similarity=0.040  Sum_probs=185.5

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhcCC-C-CCCEEeeeCccc-cccccHHHHhcCCCCCEEeCCCCCCCcc----cccccc
Q 035852          285 NWTSLRHLDLSSNHFSYLIPEWLNKF-S-RLEYLSLSSNRL-QGRISSVLLENLSSIQSLDLSFNELEWK----IPRSFS  357 (960)
Q Consensus       285 ~l~~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~L~~n~l-~~~i~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~  357 (960)
                      .+++|++|+|++|.+++..+..+... + +|++|++++|.. ...........+++|++|+|++|.+++.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            56666666666666665555555442 2 366666666651 1110112234566666666666665433    222334


Q ss_pred             cCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCC
Q 035852          358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL  437 (960)
Q Consensus       358 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  437 (960)
                      .+++|++|++++|.++.....                          .++..+.++++|++|++++|.+.+ +|..+..+
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~--------------------------~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~  242 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPK--------------------------DLETIARNCRSLVSVKVGDFEILE-LVGFFKAA  242 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHH--------------------------HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred             cCCCccEEEeeccCCCccCHH--------------------------HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence            455555555555544422222                          233334445555555555555543 44455555


Q ss_pred             CCCcEEecCCccccccc--chhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcE
Q 035852          438 SSLRYLDISNNQLNGTV--SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVN  515 (960)
Q Consensus       438 ~~L~~L~L~~n~l~~~i--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  515 (960)
                      ++|++|+++........  ....+..+++|+.++++++                         ....+|..+..+++|++
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------------~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-------------------------GPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-------------------------CTTTGGGGGGGGGGCCE
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCcccc-------------------------chhHHHHHHhhcCCCcE
Confidence            55555555432211000  0001222333333333221                         11223334444555555


Q ss_pred             EeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCC-ccccCCCCeEEccc-----------CcCcCC-CC---CCC
Q 035852          516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSA-----------NNLSGQ-LP---LLA  579 (960)
Q Consensus       516 L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~-----------n~l~~~-~p---~~~  579 (960)
                      |++++|.+.+.....+...+++|++|+++++...+.++. ...+++|++|++++           +.+++. ++   ..+
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~  377 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC  377 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence            555555543333333344555566665553222222222 23445555555552           233321 11   113


Q ss_pred             ccCcEEEcccccccccccchhhcccCCCCcccEEecc----cccccCC-----CCCcccCCCcccEEECCCCc--cccCC
Q 035852          580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE----DNLLAGE-----IPDCWMNWRYLLVLRLDNNK--FTGKL  648 (960)
Q Consensus       580 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~  648 (960)
                      ++|++|+++.|++++..+..+..   .+++|+.|+++    .|.+++.     ++..+.++++|++|++++|.  +++..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            45555555555554433222211   24556666664    4445442     22224456666666665433  44333


Q ss_pred             CcCcC-CCCCCcEEECCCCeecc-cCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhh-
Q 035852          649 PTSLG-ALSLLRSLHLRNNNLSG-TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLEL-  725 (960)
Q Consensus       649 p~~l~-~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l-  725 (960)
                      +..++ .+++|++|++++|++++ .++..+..+++|++|++++|++++.....+...+++|++|++++|++++.--..+ 
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~  534 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ  534 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence            33332 25666666666666654 2344445566666777766666544333333356666666666666654322222 


Q ss_pred             cCCCCCCeEeec
Q 035852          726 CHLAFLKILVLA  737 (960)
Q Consensus       726 ~~l~~L~~L~Ls  737 (960)
                      ..++.+....+.
T Consensus       535 ~~~p~l~~~~~~  546 (592)
T 3ogk_B          535 MARPYWNIELIP  546 (592)
T ss_dssp             GCCTTEEEEEEC
T ss_pred             HhCCCcEEEEec
Confidence            234544444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=9.4e-27  Score=253.17  Aligned_cols=229  Identities=24%  Similarity=0.313  Sum_probs=171.5

Q ss_pred             CCCCEEeCCCCCCCCCCCcc-ccCCCCCCCEEeCCCCcccCC--chhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852          112 EHLIYLNLSYNDFKGIQIPR-FLGSMGNLRFLDLSGAGFVGM--IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS  188 (960)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~  188 (960)
                      ++|++|++++|.++.  +|. .++.+++|++|+|++|++...  .|..+..+++|++|++++|.+..+            
T Consensus        28 ~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l------------   93 (306)
T 2z66_A           28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM------------   93 (306)
T ss_dssp             TTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE------------
T ss_pred             CCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC------------
Confidence            689999999999985  454 578999999999999988733  467777888999999988876533            


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC-CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF  267 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  267 (960)
                                        +..+..+++|++|++++|++++..+ ..+.++++|++|++++|.+. +..+..+..+++|++
T Consensus        94 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           94 ------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV  154 (306)
T ss_dssp             ------------------EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCE
T ss_pred             ------------------hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCE
Confidence                              2234445555556666665555554 45677777777777777776 556666777788888


Q ss_pred             EeccCcccCC-CCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCC
Q 035852          268 LDLSDNNFQG-PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN  346 (960)
Q Consensus       268 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n  346 (960)
                      |++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTS
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCC
Confidence            8888887775 467778888888888888888888777788888888888888888874333 56778888888888888


Q ss_pred             CCCcccccccccCC-CCCEEEcCCcccCC
Q 035852          347 ELEWKIPRSFSRFC-NLRSISLSGIQLSH  374 (960)
Q Consensus       347 ~l~~~~p~~l~~l~-~L~~L~L~~n~l~~  374 (960)
                      .+.+..|..+..++ +|++|++++|.++.
T Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          234 HIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            88887787777774 77777777766653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.9e-28  Score=263.61  Aligned_cols=137  Identities=18%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             cccCCCCeEEcccCcCcCCCCC-CCccCcEEEccccccc-ccccchhh---cccCCCCcccEEecccccccCCCCCcc--
Q 035852          556 TEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLS-GSILHFVC---HETNGTRLTQIINLEDNLLAGEIPDCW--  628 (960)
Q Consensus       556 ~~l~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~ls~n~l~-~~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~p~~l--  628 (960)
                      +...+|+.+++++|.+  .+|. ....++.|++++|++. +.+|....   ....+++.|+.|++++|++++.+|..+  
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3445677888888887  4454 3445777777777773 33332221   011135566666666666666666654  


Q ss_pred             cCCCcccEEECCCCccccCCCcCcCCC-----CCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccccc
Q 035852          629 MNWRYLLVLRLDNNKFTGKLPTSLGAL-----SLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN  695 (960)
Q Consensus       629 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  695 (960)
                      ..+++|++|++++|++++. |..++.+     ++|++|++++|++++..|..|+.+++|++|++++|++.+.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            5666666666666666654 5555554     6666666666666655556666666666666666665543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.3e-25  Score=258.19  Aligned_cols=229  Identities=21%  Similarity=0.221  Sum_probs=173.7

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI  687 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (960)
                      +.++.|++++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            34556666666666666777777788888888888887777777777888888888888887666666777888888888


Q ss_pred             CCCcccccCchHHhhcCcccceeeeccccccccC-chhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVF-PLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      ++|+++ .+|...+..+++|+.|++++|+..+.+ +..+..+++|+.|++++|++++ +|. +..               
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~---------------  216 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTP---------------  216 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTT---------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-ccc---------------
Confidence            888877 444444446788888888874433333 3467788888888888888864 232 222               


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI  846 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  846 (960)
                                                            +++|+.|+|++|++++..|..+.++++|+.|+|++|++++..
T Consensus       217 --------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          217 --------------------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             --------------------------------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred             --------------------------------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence                                                  234588899999998888888888999999999999998888


Q ss_pred             chhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852          847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                      |..|..+++|+.|||++|++++..+..+..+++|+.|++++|++..
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            8888889999999999999987777778888889999999887643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2e-26  Score=247.69  Aligned_cols=228  Identities=20%  Similarity=0.159  Sum_probs=154.3

Q ss_pred             cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCC
Q 035852          611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN  690 (960)
Q Consensus       611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  690 (960)
                      ..++++++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34566666655 344333  356777777777777666666777777777777777777666777777777777777777


Q ss_pred             c-ccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccC
Q 035852          691 E-FSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQY  769 (960)
Q Consensus       691 ~-l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~  769 (960)
                      + +.+..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..+..++.++.               
T Consensus        91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------  154 (285)
T 1ozn_A           91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN---------------  154 (285)
T ss_dssp             TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred             CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC---------------
Confidence            6 5533344444 5777777777777777666667777777777777777776544444443333               


Q ss_pred             CCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchh
Q 035852          770 PSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN  849 (960)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~  849 (960)
                                                            |+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..
T Consensus       155 --------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          155 --------------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             --------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             --------------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence                                                  367777777777555556777777777777777777777777


Q ss_pred             hccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852          850 IGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       850 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      ++++++|+.||+++|++++..|..+.+++.|++|++++|++.+..+
T Consensus       197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            7777777777777777776555567777777777777777766544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.9e-26  Score=247.88  Aligned_cols=235  Identities=20%  Similarity=0.248  Sum_probs=165.9

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe-ecccCCcCCcCCCCCcEEe
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN-LSGTLPVSLGNCTELETID  686 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~  686 (960)
                      +.++.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+ +.+..|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            345555555555555555667777777777777777776667777777777777777776 6655566777777777777


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      +++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++.            
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------  178 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------  178 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT------------
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc------------
Confidence            777777755555544 6777777777777777666666777888888888888877544444444333            


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI  846 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  846 (960)
                                                               |+.|+|++|++++..|..++++++|+.|+|++|++++..
T Consensus       179 -----------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          179 -----------------------------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             -----------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             -----------------------------------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence                                                     478888888888888888888888888888888888766


Q ss_pred             chhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      |+.++.+++|+.|+|++|++++..+.. .-...++.+..+.+.+.+..|..
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            677888888888888888887655431 11123444556777787777764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.8e-27  Score=259.09  Aligned_cols=247  Identities=23%  Similarity=0.256  Sum_probs=198.9

Q ss_pred             CccCcEEEcccccccccccchhhcccCCCCcccEEecccccc-cCCCCCccc-------CCCcccEEECCCCccccCCCc
Q 035852          579 ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLL-AGEIPDCWM-------NWRYLLVLRLDNNKFTGKLPT  650 (960)
Q Consensus       579 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~  650 (960)
                      ..+|+.+++++|.+  .+|..+..      .++.|++++|++ .+.+|..+.       ++++|++|++++|++++.+|.
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             CCCceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            35788899999998  56654433      278889999998 456676665       788999999999999988888


Q ss_pred             Cc--CCCCCCcEEECCCCeecccCCcCCcCC-----CCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc--C
Q 035852          651 SL--GALSLLRSLHLRNNNLSGTLPVSLGNC-----TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV--F  721 (960)
Q Consensus       651 ~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~--~  721 (960)
                      .+  +.+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..+. .+++|++|++++|++.+.  .
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHH
Confidence            76  8899999999999999876 8777777     8999999999999876666666 799999999999998876  3


Q ss_pred             chhh--cCCCCCCeEeecCCcCccc--cCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEeccc
Q 035852          722 PLEL--CHLAFLKILVLAGNNLSGT--IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK  797 (960)
Q Consensus       722 p~~l--~~l~~L~~L~Ls~N~l~g~--ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (960)
                      |..+  ..+++|+.|++++|++++.  +|..                                                 
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------------------------------------------  222 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSGVCSA-------------------------------------------------  222 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHHHHHH-------------------------------------------------
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHHHHHH-------------------------------------------------
Confidence            4455  7889999999999988731  1111                                                 


Q ss_pred             chhhhhhhccccEEEccCCcccccCc-hhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCC
Q 035852          798 TLTFKAVLRLLTNIDLSNNKFSGEIP-AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVN  876 (960)
Q Consensus       798 ~~~~~~~~~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~  876 (960)
                         ....+++|+.|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..
T Consensus       223 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~  294 (312)
T 1wwl_A          223 ---LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDE  294 (312)
T ss_dssp             ---HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTT
T ss_pred             ---HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hhh
Confidence               11223556899999999998876 45667889999999999998 7888877  8899999999999876 66 889


Q ss_pred             CCCCCEEEcccCccee
Q 035852          877 LVFLSHFNISYNNLSG  892 (960)
Q Consensus       877 l~~L~~l~ls~N~l~g  892 (960)
                      ++.|++|++++|++++
T Consensus       295 l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          295 LPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCEEEEEECTTCTTTC
T ss_pred             CCCCCEEeccCCCCCC
Confidence            9999999999998876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=254.50  Aligned_cols=227  Identities=22%  Similarity=0.225  Sum_probs=161.1

Q ss_pred             cccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecC
Q 035852          609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIG  688 (960)
Q Consensus       609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  688 (960)
                      .++.|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44555555555555556667777777777777777776666677777777777777777775555567777777777777


Q ss_pred             CCcccccCchHHhhcCcccceeeeccccccccC-chhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852          689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVF-PLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI  767 (960)
Q Consensus       689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~  767 (960)
                      +|++++ +|...+..+++|++|++++|+..+.+ +..+..+++|+.|++++|+++ .+|. +..                
T Consensus       145 ~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~----------------  205 (440)
T 3zyj_A          145 NNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP----------------  205 (440)
T ss_dssp             SCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT----------------
T ss_pred             CCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC----------------
Confidence            777763 44333336777777777774433333 346777788888888888776 3332 211                


Q ss_pred             cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852          768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP  847 (960)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP  847 (960)
                                                           +++|+.|||++|++++..|..+.++++|+.|+|++|++++..|
T Consensus       206 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          206 -------------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             -------------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             -------------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence                                                 2345788888888888778888888888888888888888888


Q ss_pred             hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce
Q 035852          848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS  891 (960)
Q Consensus       848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~  891 (960)
                      ..|.++++|+.|||++|++++..+..+..++.|+.|++++|++.
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            88888888888888888888777777788888888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=254.33  Aligned_cols=249  Identities=20%  Similarity=0.210  Sum_probs=211.6

Q ss_pred             CCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852          561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD  640 (960)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  640 (960)
                      .+.++.++..++......+++++.|++++|++.+..+    ..+.++++|+.|++++|.+++..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4566666666665544556778888888888775443    345678999999999999998888899999999999999


Q ss_pred             CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc
Q 035852          641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV  720 (960)
Q Consensus       641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~  720 (960)
                      +|++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|...+.+|...+..+++|++|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999997767789999999999999999997777789999999999999966666777765568999999999999998 4


Q ss_pred             CchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchh
Q 035852          721 FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLT  800 (960)
Q Consensus       721 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (960)
                      +| .+..+++|+.|++++|++++..|..+..++.|                                             
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------------  233 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---------------------------------------------  233 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------------------
Confidence            45 47889999999999999998778777665544                                             


Q ss_pred             hhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc
Q 035852          801 FKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG  868 (960)
Q Consensus       801 ~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g  868 (960)
                              +.|+|++|++++..|..+.++++|+.|||++|++++..+..+..+++|+.|+|++|.+..
T Consensus       234 --------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          234 --------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             --------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             --------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence                    899999999999999999999999999999999998888888999999999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=4.3e-25  Score=253.83  Aligned_cols=249  Identities=18%  Similarity=0.175  Sum_probs=213.6

Q ss_pred             ccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCC
Q 035852          610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE  689 (960)
Q Consensus       610 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  689 (960)
                      ...++.+++.++ .+|..+.  +++++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456778887777 4666554  6899999999999998899999999999999999999998889999999999999999


Q ss_pred             CcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCc-cccccccchhccCCCCccccc
Q 035852          690 NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT-CISNFTAMATFLGSDSIYTIQ  768 (960)
Q Consensus       690 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~l~~~~~~~~~~~~~  768 (960)
                      |+++ .+|...+..+++|++|++++|++.+..+..+..+++|+.|++++|+..+.+|. .+..+                
T Consensus       133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l----------------  195 (452)
T 3zyi_A          133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL----------------  195 (452)
T ss_dssp             SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred             CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC----------------
Confidence            9999 45555444799999999999999988788899999999999999766555554 23333                


Q ss_pred             CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCch
Q 035852          769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPE  848 (960)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~  848 (960)
                                                           ++|+.|+|++|++++ +| .+..+++|+.|+|++|++++..|.
T Consensus       196 -------------------------------------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~  236 (452)
T 3zyi_A          196 -------------------------------------FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPG  236 (452)
T ss_dssp             -------------------------------------TTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred             -------------------------------------CCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcc
Confidence                                                 345899999999994 56 588999999999999999999999


Q ss_pred             hhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC-cccCCCCccccCCCCCccCc
Q 035852          849 NIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE-AQFATFDSSSYIGDEYLCGP  917 (960)
Q Consensus       849 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~  917 (960)
                      .|.++++|+.|+|++|++++..|..+.++++|+.|++++|++++..|.. ..+..+....+.|||--|..
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            9999999999999999999999999999999999999999999644433 34555666678899987765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.6e-25  Score=260.46  Aligned_cols=202  Identities=24%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI  687 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (960)
                      ++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|..   +.+|+.|++
T Consensus       101 ~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L  168 (622)
T 3g06_A          101 PGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWA  168 (622)
T ss_dssp             TTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEEC
Confidence            444444444444443 222   23455555555555552 3432   2455555555555552 3322   244555555


Q ss_pred             CCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852          688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI  767 (960)
Q Consensus       688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~  767 (960)
                      ++|+++ .+|    ..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..+                  
T Consensus       169 ~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~------------------  220 (622)
T 3g06_A          169 YNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP------------------  220 (622)
T ss_dssp             CSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC------------------
T ss_pred             CCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC------------------
Confidence            555555 344    134555555555555553 2321   345555556555554 222110                  


Q ss_pred             cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852          768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP  847 (960)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP  847 (960)
                                                            ++|+.|+|++|+|++ +|   ..+++|+.|+|++|+++ .+|
T Consensus       221 --------------------------------------~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp  257 (622)
T 3g06_A          221 --------------------------------------SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP  257 (622)
T ss_dssp             --------------------------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred             --------------------------------------CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCC
Confidence                                                  123555566665553 44   33455556666666555 344


Q ss_pred             hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852          848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      .   .+++|+.|+|++|+++ .||..+.++++|+.|++++|+++|.+|.
T Consensus       258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            4   4455566666666665 5555555666666666666666655554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-25  Score=259.88  Aligned_cols=225  Identities=22%  Similarity=0.195  Sum_probs=189.6

Q ss_pred             cCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852          604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE  683 (960)
Q Consensus       604 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  683 (960)
                      ...+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  ++.+++|++|+|++|.+++..+     .++|+
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~  102 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE  102 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence            3446689999999999998888899999999999999999987666  8899999999999999985432     38899


Q ss_pred             EEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccc-ccccchhccCCC
Q 035852          684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS-NFTAMATFLGSD  762 (960)
Q Consensus       684 ~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~l~~l~~~~~~~  762 (960)
                      +|++++|.+++..+.    .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++.+|..+. .++         
T Consensus       103 ~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~---------  169 (487)
T 3oja_A          103 TLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD---------  169 (487)
T ss_dssp             EEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT---------
T ss_pred             EEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC---------
Confidence            999999999865443    478899999999999998888899999999999999999988777654 333         


Q ss_pred             CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852          763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF  842 (960)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  842 (960)
                                                                  .|+.|+|++|+|++..+  +..++.|+.|||++|.+
T Consensus       170 --------------------------------------------~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          170 --------------------------------------------TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             --------------------------------------------TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred             --------------------------------------------cccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence                                                        34899999999997633  34688999999999999


Q ss_pred             cccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce-ecCCC
Q 035852          843 SGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS-GEVPD  896 (960)
Q Consensus       843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~-g~iP~  896 (960)
                      ++. |+.++.+++|+.|||++|++++ +|..++.++.|+.|++++|++. |.+|.
T Consensus       204 ~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          204 AFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             CCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            974 4558999999999999999995 7888999999999999999987 65553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2e-24  Score=254.17  Aligned_cols=269  Identities=23%  Similarity=0.353  Sum_probs=226.1

Q ss_pred             ccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccc
Q 035852          511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKN  590 (960)
Q Consensus       511 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n  590 (960)
                      ..++.|++++|++. .+|..+.   ++|++|++++|.++. +|.  .+++|++|++++|++++ +|..+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCC
Confidence            46899999999986 7787653   799999999999985 444  57899999999999985 5558899999999999


Q ss_pred             cccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecc
Q 035852          591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSG  670 (960)
Q Consensus       591 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  670 (960)
                      ++++. |.       .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+.+|+.|++++|++++
T Consensus       112 ~l~~l-~~-------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          112 PLTHL-PA-------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CCCCC-CC-------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cCCCC-CC-------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            99863 32       36889999999999986 5554   4899999999999984 554   35789999999999994


Q ss_pred             cCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccc
Q 035852          671 TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS  750 (960)
Q Consensus       671 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  750 (960)
                       +|   ..+++|+.|++++|+++ .+|.    .+++|+.|++++|.++. +|..   +++|+.|++++|++++ +|..  
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp~~--  239 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--  239 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCCC--
T ss_pred             -Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CCCC--
Confidence             66   45789999999999998 4664    36799999999999984 5543   5889999999999985 5521  


Q ss_pred             ccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhc
Q 035852          751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR  830 (960)
Q Consensus       751 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~  830 (960)
                       +                                                     ++|+.|+|++|+|+ .+|.   .++
T Consensus       240 -l-----------------------------------------------------~~L~~L~Ls~N~L~-~lp~---~~~  261 (622)
T 3g06_A          240 -P-----------------------------------------------------SELKELMVSGNRLT-SLPM---LPS  261 (622)
T ss_dssp             -C-----------------------------------------------------TTCCEEECCSSCCS-CCCC---CCT
T ss_pred             -C-----------------------------------------------------CcCcEEECCCCCCC-cCCc---ccc
Confidence             1                                                     23589999999999 6776   678


Q ss_pred             ccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCC
Q 035852          831 ELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLV  878 (960)
Q Consensus       831 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  878 (960)
                      +|+.|+|++|+++ .||+.++++++|+.|+|++|.++|.+|..+.+++
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            9999999999999 8899999999999999999999999998776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.2e-26  Score=251.23  Aligned_cols=89  Identities=20%  Similarity=0.243  Sum_probs=71.6

Q ss_pred             cccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc-ccCCCCCCCCCCCCEEEc
Q 035852          807 LLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE-GEIPKNTVNLVFLSHFNI  885 (960)
Q Consensus       807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~-g~iP~~l~~l~~L~~l~l  885 (960)
                      +|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|+.+..+++|+.|++++|+++ +.+|..++.++.|+.+++
T Consensus       192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence            35788888888884 4555888888888888888888 47888888888888999988888 778888888888888888


Q ss_pred             c-cCcceecCCCC
Q 035852          886 S-YNNLSGEVPDE  897 (960)
Q Consensus       886 s-~N~l~g~iP~~  897 (960)
                      + .+.+.|..|..
T Consensus       270 ~~~~~l~~~~~~~  282 (317)
T 3o53_A          270 QTVKKLTGQNEEE  282 (317)
T ss_dssp             HHHHHHHSSSSCC
T ss_pred             CCchhccCCchhc
Confidence            8 55688877754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.3e-24  Score=229.18  Aligned_cols=227  Identities=20%  Similarity=0.171  Sum_probs=188.7

Q ss_pred             EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852          613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF  692 (960)
Q Consensus       613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (960)
                      ++..+..++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            444444444 4565553  5799999999999877777889999999999999999877777899999999999999999


Q ss_pred             cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcc-ccCccccccccchhccCCCCcccccCCC
Q 035852          693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG-TIPTCISNFTAMATFLGSDSIYTIQYPS  771 (960)
Q Consensus       693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~~~~~~~~~~~~~~~  771 (960)
                      ++..|..+. .+++|++|++++|++.+..+..+..+++|+.|++++|++++ .+|..+++++.|                
T Consensus        89 ~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------  151 (276)
T 2z62_A           89 QSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------  151 (276)
T ss_dssp             CEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC----------------
T ss_pred             CccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC----------------
Confidence            876666665 78999999999999998777788999999999999999986 357766655444                


Q ss_pred             CCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccc----eeecCcccCcccCc
Q 035852          772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELR----SLNLSHNFFSGRIP  847 (960)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~iP  847 (960)
                                                           +.|+|++|++++..|..+..++.|+    .|++++|.+++..|
T Consensus       152 -------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~  194 (276)
T 2z62_A          152 -------------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP  194 (276)
T ss_dssp             -------------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred             -------------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence                                                 8999999999988888899888888    89999999997555


Q ss_pred             hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      . .....+|+.|+|++|++++..+..+.++++|+.|++++|++.+..|.-
T Consensus       195 ~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          195 G-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             T-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             c-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            4 444558999999999999777777899999999999999999988754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.1e-25  Score=243.40  Aligned_cols=243  Identities=21%  Similarity=0.206  Sum_probs=198.8

Q ss_pred             cEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEE
Q 035852          583 MVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH  662 (960)
Q Consensus       583 ~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  662 (960)
                      +..+++.+.+....    ...+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|  +..+++|++|+
T Consensus        13 ~i~~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~   86 (317)
T 3o53_A           13 KIEKVTDSSLKQAL----ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD   86 (317)
T ss_dssp             EEESCCTTTHHHHH----HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred             eEeeccccchhhhH----HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence            34455555543222    2223446789999999999998888899999999999999999987655  88999999999


Q ss_pred             CCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852          663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       663 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      +++|++++..     ..++|++|++++|++++..+.    .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus        87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            9999998533     348999999999999865443    4788999999999999888888999999999999999998


Q ss_pred             cccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccC
Q 035852          743 GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEI  822 (960)
Q Consensus       743 g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~i  822 (960)
                      +..|..+.                                                    ..++.|+.|+|++|++++. 
T Consensus       158 ~~~~~~~~----------------------------------------------------~~l~~L~~L~L~~N~l~~~-  184 (317)
T 3o53_A          158 TVNFAELA----------------------------------------------------ASSDTLEHLNLQYNFIYDV-  184 (317)
T ss_dssp             EEEGGGGG----------------------------------------------------GGTTTCCEEECTTSCCCEE-
T ss_pred             cccHHHHh----------------------------------------------------hccCcCCEEECCCCcCccc-
Confidence            76655442                                                    1123459999999999965 


Q ss_pred             chhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce-ecCCC
Q 035852          823 PAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS-GEVPD  896 (960)
Q Consensus       823 p~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~-g~iP~  896 (960)
                      |. ...+++|+.|+|++|++++ +|+.+..+++|+.|||++|+++ .+|..+..++.|+.|++++|++. +.+|.
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          185 KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            43 3458999999999999996 5666999999999999999999 68999999999999999999998 66654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.2e-27  Score=286.17  Aligned_cols=404  Identities=18%  Similarity=0.109  Sum_probs=197.5

Q ss_pred             cccCCCCCCEEeCCCCCCC-CCC-C------------ccccCCCCCCCEEeCCCCcccCCchhhhc-CCCCCcEEeCCCC
Q 035852          107 ALLDFEHLIYLNLSYNDFK-GIQ-I------------PRFLGSMGNLRFLDLSGAGFVGMIPNQIG-NLSNLQYLNLRPN  171 (960)
Q Consensus       107 ~l~~l~~L~~L~Ls~n~~~-~~~-~------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n  171 (960)
                      .+.++++|++|+++++... ... .            +.....+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            4567788999999887521 110 1            12234678888899988888777777775 6888888888887


Q ss_pred             C-CCCCccCCcc-cccCCCccceeecCCCCCCCCC--CCcccccCCCCCCEEEccCCcCCCCCCCC----ccCCCCCcEE
Q 035852          172 Y-LGGLYVEDLG-WLYDLSLLENLDLSGVDLSKVS--NGPLVTNALRSLLVLQLAGCQLSHFPPLS----VANFSSLVTL  243 (960)
Q Consensus       172 ~-i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L  243 (960)
                      . ++.   ..+. ....+++|++|++++|.+++..  ........+++|++|++++|. ..+....    +.++++|++|
T Consensus       141 ~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          141 EGFST---DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             EEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEE
Confidence            3 221   1122 2235777777777777765532  122223355666666666665 1111111    1334666666


Q ss_pred             eCCCCCCCCChhHHhhcCCCCCCEEeccCcc-------cCCCCcccccCCCCCCEE-eCCCCcCCCcchhhhcCCCCCCE
Q 035852          244 DLSHNQFDNSLIATQLYGLCNLVFLDLSDNN-------FQGPIPDTIQNWTSLRHL-DLSSNHFSYLIPEWLNKFSRLEY  315 (960)
Q Consensus       244 ~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~  315 (960)
                      ++++|... ..++..+..+++|++|+++.+.       +. .++..+.++++|+.| .+..... ..++..+..+++|++
T Consensus       217 ~L~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~  293 (594)
T 2p1m_B          217 KLNRAVPL-EKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTT  293 (594)
T ss_dssp             ECCTTSCH-HHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCE
T ss_pred             ecCCCCcH-HHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCE
Confidence            66666322 2355556666666666644332       11 123345555566655 2322211 223333344556666


Q ss_pred             EeeeCccccccccHHHHhcCCCCCEEeCCCCCCCc-ccccccccCCCCCEEEcCC---------cccCCcchhhHHHhhc
Q 035852          316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSG---------IQLSHQKVSQVLAIFS  385 (960)
Q Consensus       316 L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~---------n~l~~~~~~~~~~~~~  385 (960)
                      |++++|.+++......+..+++|++|++++| +.. .++.....+++|++|++.+         +.++......+...  
T Consensus       294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~--  370 (594)
T 2p1m_B          294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG--  370 (594)
T ss_dssp             EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH--
T ss_pred             EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh--
Confidence            6666655543322233445556666666555 221 1111222355555555522         23332222222211  


Q ss_pred             cCCCCcccEEEcCCCCCCCchhhhhc-CCCCCCEEecC--C----CcCCCC-----CcccccCCCCCcEEecCCcccccc
Q 035852          386 GCVSDVLESLDLSNTTLSGSLTNQIG-KFKVLNSVDLS--E----NSISGQ-----VPWSLGKLSSLRYLDISNNQLNGT  453 (960)
Q Consensus       386 ~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~  453 (960)
                         .++|+.|.+..+.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|++|++++ .+++.
T Consensus       371 ---~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          371 ---CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             ---CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             ---chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence               13355555555555544443333 35555555555  2    223211     111133445555555544 33322


Q ss_pred             cchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCccc-ccCccCcEEeccCCCCcCCCchhHh
Q 035852          454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL-HSQNHLVNLDISDSGIVDTIPNRFW  532 (960)
Q Consensus       454 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~Ls~n~~~~~~~~~~~  532 (960)
                      ........+++|+.|++++|.                        +++.....+ ..+++|+.|++++|.+.+.....+.
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~------------------------i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~  502 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAG------------------------DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA  502 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCC------------------------SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred             HHHHHHHhchhccEeeccCCC------------------------CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence            222111124444444444444                        332222222 3455566666666655333333334


Q ss_pred             hcCCcccEEEccCccc
Q 035852          533 KSITQFNYLSLSNNQI  548 (960)
Q Consensus       533 ~~l~~L~~L~Ls~n~l  548 (960)
                      ..+++|++|++++|.+
T Consensus       503 ~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          503 SKLETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGGGSSEEEEESSCC
T ss_pred             HhCCCCCEEeeeCCCC
Confidence            4455666666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=3.2e-26  Score=273.79  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=72.6

Q ss_pred             HhhcCCCCCCEEeccCcccCC---CCc------------ccccCCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEeeeC
Q 035852          257 TQLYGLCNLVFLDLSDNNFQG---PIP------------DTIQNWTSLRHLDLSSNHFSYLIPEWLN-KFSRLEYLSLSS  320 (960)
Q Consensus       257 ~~l~~l~~L~~L~Ls~n~l~~---~~p------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~  320 (960)
                      ..+..+++|++|+++++....   ..|            .....+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            345556667777776654221   111            1124577888888888887776666665 678888888888


Q ss_pred             c-cccccccHHHHhcCCCCCEEeCCCCCCCcccccccc----cCCCCCEEEcCCcc
Q 035852          321 N-RLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS----RFCNLRSISLSGIQ  371 (960)
Q Consensus       321 n-~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~L~~n~  371 (960)
                      | .++.........++++|++|++++|.+++..+..+.    .+++|++|++++|.
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            8 444322224455788888888888877654444333    45677777766665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.4e-24  Score=250.77  Aligned_cols=223  Identities=22%  Similarity=0.173  Sum_probs=192.4

Q ss_pred             ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      ...+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|  +..+++|++|+|++|++++ +|     ..++|
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L  101 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSI  101 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCc
Confidence            3345689999999999998888899999999999999999997766  9999999999999999985 44     34899


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV  787 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (960)
                      +.|++++|.+++..+.   .+++|+.|++++|++++..|..+++++.|                                
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------------------------  146 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV--------------------------------  146 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE--------------------------------
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC--------------------------------
Confidence            9999999999987664   36889999999999998888777665554                                


Q ss_pred             cceEEEecccchhhhhhhccccEEEccCCcccccCchhhh-hhcccceeecCcccCcccCchhhccCCCCCEEECcCCcc
Q 035852          788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEIT-VLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL  866 (960)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l  866 (960)
                                           +.|||++|++++.+|..+. .+++|+.|+|++|.+++..+  +..+++|+.|||++|++
T Consensus       147 ---------------------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          147 ---------------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             ---------------------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred             ---------------------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence                                 8999999999999999987 79999999999999998633  45799999999999999


Q ss_pred             cccCCCCCCCCCCCCEEEcccCcceecCCCC-cccCCCCccccCCCCCccCcc
Q 035852          867 EGEIPKNTVNLVFLSHFNISYNNLSGEVPDE-AQFATFDSSSYIGDEYLCGPV  918 (960)
Q Consensus       867 ~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~  918 (960)
                      ++.+ ..+..++.|+.|++++|++++ ||.. ..+..+....+.||+..|+.+
T Consensus       204 ~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          204 AFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             CCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence            9754 458999999999999999997 6765 344566677789999998753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=5.1e-23  Score=218.96  Aligned_cols=217  Identities=23%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 035852           60 GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNL  139 (960)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L  139 (960)
                      .++|.|.|+.|.- .+.++.+++++.             .+. .+|..+.  +++++|++++|.+++. .+..++.+++|
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~-------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L   63 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK-------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKL   63 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS-------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC-------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCC
Confidence            5789999999953 234455666553             222 3444332  4566666666666543 33455666666


Q ss_pred             CEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEE
Q 035852          140 RFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL  219 (960)
Q Consensus       140 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L  219 (960)
                      ++|++++|++....+..+.++++|++|++++|.++.++.                             ..+..+++|++|
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~~~l~~L~~L  114 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-----------------------------GVFDQLVNLAEL  114 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-----------------------------TTTTTCSSCCEE
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-----------------------------hHcccccCCCEE
Confidence            666666666554444444555555555555554443221                             223344455555


Q ss_pred             EccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcC
Q 035852          220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF  299 (960)
Q Consensus       220 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  299 (960)
                      ++++|.+++.++..|.++++|++|++++|.++ ...+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            55555555555555555555555555555554 33333345555555555555555544444455555555555555555


Q ss_pred             CCcchhhhcCCCCCCEEeeeCcccc
Q 035852          300 SYLIPEWLNKFSRLEYLSLSSNRLQ  324 (960)
Q Consensus       300 ~~~~p~~l~~l~~L~~L~L~~n~l~  324 (960)
                      ++..+..+..+++|+.|++++|.+.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          194 KRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCHHHhccccCCCEEEecCCCee
Confidence            5444444444555555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.7e-23  Score=222.11  Aligned_cols=212  Identities=19%  Similarity=0.169  Sum_probs=169.7

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI  687 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (960)
                      +.++.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..|..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666777777777666667888888888888888888777778888888999999998888777788888889999999


Q ss_pred             CCCcccccCchHHhhcCcccceeeecccccccc-CchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGV-FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      ++|++++..+..+. .+++|++|++++|++++. +|..+..+++|+.|++++|++++..+..+..+..+..         
T Consensus       108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~---------  177 (276)
T 2z62_A          108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL---------  177 (276)
T ss_dssp             TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------
T ss_pred             CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc---------
Confidence            99888854444454 788899999999988863 6888999999999999999998776666665555421         


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhcccc-EEEccCCcccccCchhhhhhcccceeecCcccCccc
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLT-NIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR  845 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  845 (960)
                                                               +. .|++++|++++..|.. ....+|+.|+|++|++++.
T Consensus       178 -----------------------------------------l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          178 -----------------------------------------LNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSV  215 (276)
T ss_dssp             -----------------------------------------CCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCC
T ss_pred             -----------------------------------------cceeeecCCCcccccCccc-cCCCcccEEECCCCceeec
Confidence                                                     12 7999999999655544 4445899999999999977


Q ss_pred             CchhhccCCCCCEEECcCCcccccCC
Q 035852          846 IPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       846 iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                      .+..++.+++|+.|+|++|++++..|
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CHhHhcccccccEEEccCCcccccCC
Confidence            67778999999999999999997654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.3e-23  Score=223.64  Aligned_cols=205  Identities=20%  Similarity=0.202  Sum_probs=165.8

Q ss_pred             ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      ...+++|+.|++++|.++ .+ ..+..+++|++|++++|++++ + ..+..+++|++|++++|++++..|..+. .+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFD-KLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred             cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhc-CCcCC
Confidence            455677888888888876 33 357778888888888888875 2 4677888888888888888854444344 68888


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV  787 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (960)
                      ++|++++|++++..+..+..+++|+.|++++|++++..|..++.++.                                 
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---------------------------------  158 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN---------------------------------  158 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------------------------
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc---------------------------------
Confidence            88888888888777777888999999999999988665555554444                                 


Q ss_pred             cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852          788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE  867 (960)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  867 (960)
                                          |+.|++++|++++..|..++.+++|+.|+|++|++++..|..++.+++|+.|++++|.+.
T Consensus       159 --------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          159 --------------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             --------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             --------------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence                                488999999999877777899999999999999999988888899999999999999998


Q ss_pred             ccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          868 GEIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       868 g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      |..|       .|+.++++.|+++|.||..
T Consensus       219 ~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          219 CTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             ccCc-------HHHHHHHHHHhCCCcccCc
Confidence            7655       5888999999999999975

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.5e-22  Score=215.38  Aligned_cols=205  Identities=20%  Similarity=0.226  Sum_probs=137.3

Q ss_pred             ccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeec
Q 035852          634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILR  713 (960)
Q Consensus       634 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~  713 (960)
                      .+.+++++++++ .+|..+.  ++|++|++++|++++..+..|.++++|++|++++|+++ .+|..++..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            445555555555 3444333  45566666666665444445666666666666666665 4444443356666666666


Q ss_pred             cccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEE
Q 035852          714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT  793 (960)
Q Consensus       714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (960)
                      +|++++..+..+..+++|+.|++++|++++..|..+..++.                                       
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------------------------------  134 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK---------------------------------------  134 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC---------------------------------------
Confidence            66666555555666777777777777776555544444333                                       


Q ss_pred             ecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC
Q 035852          794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN  873 (960)
Q Consensus       794 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~  873 (960)
                                    |+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus       135 --------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          135 --------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             --------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             --------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                          377888888887655555788888888888888888766667888888888888888888766666


Q ss_pred             CCCCCCCCEEEcccCcceecCC
Q 035852          874 TVNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       874 l~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      +..++.|+.|++++|++....+
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSS
T ss_pred             hccccCCCEEEecCCCeeCCCc
Confidence            8888888888888888776544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.5e-23  Score=219.56  Aligned_cols=207  Identities=18%  Similarity=0.170  Sum_probs=172.2

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      ++.++.+++++|.++. + ..+..+++|++|++++|++++ + ..+..+++|++|++++|++++..+..|.++++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            5677778888877763 2 357788899999999999885 3 4788889999999999999977777788999999999


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      +++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++            
T Consensus       116 L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------  182 (272)
T 3rfs_A          116 LVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ------------  182 (272)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------
T ss_pred             CCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc------------
Confidence            999999855444444 7899999999999999877777889999999999999998766655555444            


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI  846 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  846 (960)
                                                               |+.|++++|++++..|..++.+++|+.|+|++|.+.+..
T Consensus       183 -----------------------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          183 -----------------------------------------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             -----------------------------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             -----------------------------------------CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence                                                     489999999999888888899999999999999998765


Q ss_pred             chhhccCCCCCEEECcCCcccccCCCCCCCCC
Q 035852          847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLV  878 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  878 (960)
                      |       .|+.|+++.|.++|.+|..++++.
T Consensus       222 ~-------~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          222 P-------GIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             T-------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             c-------HHHHHHHHHHhCCCcccCcccccC
Confidence            4       688899999999999999988664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=5.6e-25  Score=247.50  Aligned_cols=240  Identities=18%  Similarity=0.251  Sum_probs=184.8

Q ss_pred             ccCCCCcccEEecccccccCC----CCCcccCCCcccEEECCCC---ccccCCCcCc-------CCCCCCcEEECCCCee
Q 035852          603 ETNGTRLTQIINLEDNLLAGE----IPDCWMNWRYLLVLRLDNN---KFTGKLPTSL-------GALSLLRSLHLRNNNL  668 (960)
Q Consensus       603 ~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~L~~N~l  668 (960)
                      .+..++.|+.|++++|.+++.    ++..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|++
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            344566777777777777764    3334667788888888885   4445566554       6788899999999988


Q ss_pred             cc----cCCcCCcCCCCCcEEecCCCcccccCchHHhh---cC---------cccceeeecccccc-ccCc---hhhcCC
Q 035852          669 SG----TLPVSLGNCTELETIDIGENEFSGNVPAWIGE---RF---------PRMIILILRSNKFH-GVFP---LELCHL  728 (960)
Q Consensus       669 ~~----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l  728 (960)
                      ++    .+|..+..+++|++|+|++|++++..+..+..   .+         ++|++|++++|+++ +.+|   ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            86    47778888899999999999887554444432   22         88999999999987 4555   467788


Q ss_pred             CCCCeEeecCCcCc--c---ccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhh
Q 035852          729 AFLKILVLAGNNLS--G---TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKA  803 (960)
Q Consensus       729 ~~L~~L~Ls~N~l~--g---~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  803 (960)
                      ++|+.|++++|+++  |   .+|..+.                                                     
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~-----------------------------------------------------  213 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLA-----------------------------------------------------  213 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGG-----------------------------------------------------
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhh-----------------------------------------------------
Confidence            89999999999886  2   1221222                                                     


Q ss_pred             hhccccEEEccCCccc----ccCchhhhhhcccceeecCcccCccc----Cchhhc--cCCCCCEEECcCCcccc----c
Q 035852          804 VLRLLTNIDLSNNKFS----GEIPAEITVLRELRSLNLSHNFFSGR----IPENIG--AMALLESLDFSSNRLEG----E  869 (960)
Q Consensus       804 ~~~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~--~l~~L~~L~Ls~N~l~g----~  869 (960)
                      .+++|+.|+|++|+++    +.+|..+..+++|+.|+|++|.+++.    +|..+.  .+++|+.|+|++|++++    .
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~  293 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  293 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence            2345689999999997    78899999999999999999999876    677774  49999999999999998    5


Q ss_pred             CCCCC-CCCCCCCEEEcccCcceecCC
Q 035852          870 IPKNT-VNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       870 iP~~l-~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      +|..+ .+++.|++|++++|++++..|
T Consensus       294 l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          294 LKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88887 668999999999999997665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.7e-22  Score=215.11  Aligned_cols=204  Identities=21%  Similarity=0.208  Sum_probs=128.3

Q ss_pred             ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      +.++++++++++++|.++ .+|..+.  ++++.|++++|++++..|..|..+++|++|++++|++++ +|..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence            344555666666666665 4454443  456666666666665555566666666666666666653 3322  246666


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV  787 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (960)
                      ++|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++.|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            66666666665 455566666777777777777765444444443333                                


Q ss_pred             cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852          788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE  867 (960)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  867 (960)
                                           +.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus       127 ---------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          127 ---------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ---------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ---------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence                                 66777777777555555667777777777777777544445566777777777777776


Q ss_pred             ccCCCCCCCCCCCCEEEcccCccee
Q 035852          868 GEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       868 g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                       .+|..+..+..|+.+++++|++..
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -ccChhhcccccCCeEEeCCCCccC
Confidence             667777777777777777776643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=4.3e-23  Score=224.41  Aligned_cols=142  Identities=19%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             CcccEEecccccccCCCCCcc--cCCCcccEEECCCCccccCCC----cCcCCCCCCcEEECCCCeecccCCcCCcCCCC
Q 035852          608 RLTQIINLEDNLLAGEIPDCW--MNWRYLLVLRLDNNKFTGKLP----TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE  681 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  681 (960)
                      +.|+.|++++|.+++..|..+  ..+++|++|++++|++++..|    ..+..+++|++|++++|++++..|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            457777777777777777776  777778888888887776544    23445777777777777777766777777777


Q ss_pred             CcEEecCCCccccc--Cch-HHhhcCcccceeeecccccccc--Cch-hhcCCCCCCeEeecCCcCccccCccc
Q 035852          682 LETIDIGENEFSGN--VPA-WIGERFPRMIILILRSNKFHGV--FPL-ELCHLAFLKILVLAGNNLSGTIPTCI  749 (960)
Q Consensus       682 L~~L~Ls~N~l~g~--ip~-~~~~~l~~L~~L~L~~N~l~~~--~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~  749 (960)
                      |++|++++|++.+.  ++. .....+++|++|++++|+++..  .+. .+..+++|++||+++|++++.+|..+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            77777777776542  111 1111345555555555555411  111 12344555555555555544444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.6e-23  Score=233.01  Aligned_cols=237  Identities=20%  Similarity=0.191  Sum_probs=142.9

Q ss_pred             CcccEEecccccccCCCC----CcccCCC-cccEEECCCCccccCCCcCcCCC-----CCCcEEECCCCeecccCCcC--
Q 035852          608 RLTQIINLEDNLLAGEIP----DCWMNWR-YLLVLRLDNNKFTGKLPTSLGAL-----SLLRSLHLRNNNLSGTLPVS--  675 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~--  675 (960)
                      +.|+.|++++|.+++..+    ..+..++ +|++|+|++|++++..+..+..+     ++|++|+|++|++++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            345566666666555444    4555565 66677777776665555555443     66777777777766554443  


Q ss_pred             --CcCC-CCCcEEecCCCcccccCchHHhhc----CcccceeeeccccccccC----chhhcCCC-CCCeEeecCCcCcc
Q 035852          676 --LGNC-TELETIDIGENEFSGNVPAWIGER----FPRMIILILRSNKFHGVF----PLELCHLA-FLKILVLAGNNLSG  743 (960)
Q Consensus       676 --l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~----l~~L~~L~L~~N~l~~~~----p~~l~~l~-~L~~L~Ls~N~l~g  743 (960)
                        +..+ ++|++|++++|++++..+..+...    .++|++|++++|++++..    +..+..++ +|+.|++++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3333 677777777777765544443321    246777777777776433    33344444 77777777777765


Q ss_pred             ccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhh-ccccEEEccCCccccc-
Q 035852          744 TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL-RLLTNIDLSNNKFSGE-  821 (960)
Q Consensus       744 ~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~g~-  821 (960)
                      ..+..+...  +                                               ... +.|+.|||++|++++. 
T Consensus       182 ~~~~~l~~~--l-----------------------------------------------~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          182 KNCAELAKF--L-----------------------------------------------ASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             SCHHHHHHH--H-----------------------------------------------HTSCTTCCEEECTTSCGGGSC
T ss_pred             hhHHHHHHH--H-----------------------------------------------HhCCCCCCEEECCCCCCChhH
Confidence            544433211  0                                               011 2457777777777753 


Q ss_pred             ---Cchhhhhh-cccceeecCcccCcccCch----hhccCCCCCEEECcCCcccc-------cCCCCCCCCCCCCEEEcc
Q 035852          822 ---IPAEITVL-RELRSLNLSHNFFSGRIPE----NIGAMALLESLDFSSNRLEG-------EIPKNTVNLVFLSHFNIS  886 (960)
Q Consensus       822 ---ip~~l~~l-~~L~~L~Ls~N~l~g~iP~----~l~~l~~L~~L~Ls~N~l~g-------~iP~~l~~l~~L~~l~ls  886 (960)
                         +|..+..+ ++|+.|||++|.+++..+.    .+..+++|+.|+|++|++.+       .++..+.+++.|+.||++
T Consensus       213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~  292 (362)
T 3goz_A          213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN  292 (362)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence               45555553 4777777777777765442    33556777788888777432       234566777778888888


Q ss_pred             cCcceec
Q 035852          887 YNNLSGE  893 (960)
Q Consensus       887 ~N~l~g~  893 (960)
                      +|++.+.
T Consensus       293 ~N~l~~~  299 (362)
T 3goz_A          293 GKEIHPS  299 (362)
T ss_dssp             SCBCCGG
T ss_pred             CCcCCCc
Confidence            8877655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=7.3e-22  Score=211.78  Aligned_cols=205  Identities=21%  Similarity=0.220  Sum_probs=173.5

Q ss_pred             cCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852          604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE  683 (960)
Q Consensus       604 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  683 (960)
                      +.++++++.++++++.++ .+|..+.  +.+++|++++|++++..|..|..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            345678888999998888 4565554  6899999999999988888899999999999999999865432  7889999


Q ss_pred             EEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCC
Q 035852          684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDS  763 (960)
Q Consensus       684 ~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~  763 (960)
                      +|++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..+++         
T Consensus        81 ~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---------  149 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK---------  149 (290)
T ss_dssp             EEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---------
T ss_pred             EEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC---------
Confidence            9999999998 7887665 7999999999999999888888999999999999999998655544444433         


Q ss_pred             cccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCc
Q 035852          764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS  843 (960)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  843 (960)
                                                                  |+.|+|++|+|++..+..+..+++|+.|+|++|+++
T Consensus       150 --------------------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          150 --------------------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             --------------------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             --------------------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence                                                        489999999999655556788999999999999998


Q ss_pred             ccCchhhccCCCCCEEECcCCccccc
Q 035852          844 GRIPENIGAMALLESLDFSSNRLEGE  869 (960)
Q Consensus       844 g~iP~~l~~l~~L~~L~Ls~N~l~g~  869 (960)
                       .+|+.+..+..|+.|+|++|.+...
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             -ccChhhcccccCCeEEeCCCCccCc
Confidence             7899999999999999999998753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.5e-23  Score=235.92  Aligned_cols=237  Identities=21%  Similarity=0.260  Sum_probs=179.5

Q ss_pred             cCcEEEcccccccccccchhhcccCCCCcccEEecccc---cccCCCCCcc-------cCCCcccEEECCCCcccc----
Q 035852          581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDN---LLAGEIPDCW-------MNWRYLLVLRLDNNKFTG----  646 (960)
Q Consensus       581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~~----  646 (960)
                      +|+.|++++|++.+..+..++..+..+++|+.|++++|   ++++.+|..+       ..+++|++|+|++|.+++    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            34444444444444434444445566777788877774   4555566554       678899999999999986    


Q ss_pred             CCCcCcCCCCCCcEEECCCCeecccCCcC----CcCC---------CCCcEEecCCCccc-ccCch---HHhhcCcccce
Q 035852          647 KLPTSLGALSLLRSLHLRNNNLSGTLPVS----LGNC---------TELETIDIGENEFS-GNVPA---WIGERFPRMII  709 (960)
Q Consensus       647 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-g~ip~---~~~~~l~~L~~  709 (960)
                      .+|..+..+++|++|+|++|.+++..+..    +..+         ++|++|++++|+++ +.+|.   .+. .+++|++
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~  191 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHT  191 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCE
Confidence            46777888899999999999987543333    3334         89999999999997 45553   343 6889999


Q ss_pred             eeecccccc--c---cCchhhcCCCCCCeEeecCCcCc----cccCccccccccchhccCCCCcccccCCCCCCCCCCcc
Q 035852          710 LILRSNKFH--G---VFPLELCHLAFLKILVLAGNNLS----GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF  780 (960)
Q Consensus       710 L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  780 (960)
                      |++++|+++  |   ..|..+..+++|+.|+|++|.++    +.+|..+..++                           
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~---------------------------  244 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP---------------------------  244 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT---------------------------
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC---------------------------
Confidence            999999988  3   34557888999999999999986    45555544433                           


Q ss_pred             ccccccccceEEEecccchhhhhhhccccEEEccCCccccc----Cchhhhh--hcccceeecCcccCcc----cCchhh
Q 035852          781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE----IPAEITV--LRELRSLNLSHNFFSG----RIPENI  850 (960)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----ip~~l~~--l~~L~~L~Ls~N~l~g----~iP~~l  850 (960)
                                                +|+.|+|++|++++.    +|..+..  +++|+.|+|++|.+++    .+|..+
T Consensus       245 --------------------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          245 --------------------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             --------------------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             --------------------------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence                                      458999999999876    6777744  8999999999999998    589888


Q ss_pred             -ccCCCCCEEECcCCcccccCC
Q 035852          851 -GAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       851 -~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                       .++++|+.|+|++|++++..|
T Consensus       299 ~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHCTTCCEEECTTSBSCTTSH
T ss_pred             HhcCCCceEEEccCCcCCcchh
Confidence             679999999999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.6e-23  Score=233.00  Aligned_cols=259  Identities=18%  Similarity=0.170  Sum_probs=161.6

Q ss_pred             EcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCC-cccEEecccccccCCCCCcccCC-----Cccc
Q 035852          565 DLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTR-LTQIINLEDNLLAGEIPDCWMNW-----RYLL  635 (960)
Q Consensus       565 ~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~  635 (960)
                      +++.|.+++.+|..   +.+|++|++++|.+.+..+..++..+..++ .|+.|++++|.+++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            34444444444332   233555555555555544444444455566 67777777777776666555554     7788


Q ss_pred             EEECCCCccccCCCcCcC----CC-CCCcEEECCCCeecccCCcCC----cC-CCCCcEEecCCCcccccCchH----Hh
Q 035852          636 VLRLDNNKFTGKLPTSLG----AL-SLLRSLHLRNNNLSGTLPVSL----GN-CTELETIDIGENEFSGNVPAW----IG  701 (960)
Q Consensus       636 ~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~g~ip~~----~~  701 (960)
                      +|++++|++++..+..+.    .+ ++|++|++++|++++..+..+    .. .++|++|++++|++++..+..    +.
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            888888888766555433    33 678888888888876554433    23 357888888888887544333    33


Q ss_pred             hcCc-ccceeeeccccccccCchhhc----CC-CCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCC
Q 035852          702 ERFP-RMIILILRSNKFHGVFPLELC----HL-AFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSF  775 (960)
Q Consensus       702 ~~l~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  775 (960)
                       .++ +|++|++++|++++..+..+.    .+ ++|+.||+++|++++.-...+..                        
T Consensus       164 -~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~------------------------  218 (362)
T 3goz_A          164 -AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY------------------------  218 (362)
T ss_dssp             -TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------------------------
T ss_pred             -cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH------------------------
Confidence             343 788888888888776665443    34 58888888888876421111100                        


Q ss_pred             CCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchh----hhhhcccceeecCcccCccc------
Q 035852          776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAE----ITVLRELRSLNLSHNFFSGR------  845 (960)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g~------  845 (960)
                                              .+....+.|+.|||++|++++..+..    +..++.|+.|+|++|.+.+.      
T Consensus       219 ------------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~  274 (362)
T 3goz_A          219 ------------------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK  274 (362)
T ss_dssp             ------------------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred             ------------------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence                                    00011235688888888888765533    34567888888888885433      


Q ss_pred             -CchhhccCCCCCEEECcCCcccccCCC
Q 035852          846 -IPENIGAMALLESLDFSSNRLEGEIPK  872 (960)
Q Consensus       846 -iP~~l~~l~~L~~L~Ls~N~l~g~iP~  872 (960)
                       +++.+.++++|+.||+++|++.+..|.
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             HHHHHhccCCceEEEecCCCcCCCcchH
Confidence             344567778888888888888776443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.1e-22  Score=224.19  Aligned_cols=237  Identities=21%  Similarity=0.176  Sum_probs=144.1

Q ss_pred             CCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCC--CCCCEEeCCCCCCCCCCCccccCCCC
Q 035852           60 GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDF--EHLIYLNLSYNDFKGIQIPRFLGSMG  137 (960)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l--~~L~~L~Ls~n~~~~~~~p~~l~~l~  137 (960)
                      .-|.+|.++.|+.  ..++.+++++.             .+.   +..+..+  +++++|++++|.+.+.  +..+..++
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~-------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~   93 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGK-------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPF   93 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTC-------------BCC---HHHHHHHHHTTCSEEECTTCEECSC--CCSCCCCB
T ss_pred             HHHHHHHHHhcCc--hhheeeccccc-------------cCC---HHHHHhhhhccceEEEcCCcccccc--chhhccCC
Confidence            3567899999863  45777888764             222   2345555  7888888888888763  33356788


Q ss_pred             CCCEEeCCCCcccCC-chhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCC
Q 035852          138 NLRFLDLSGAGFVGM-IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSL  216 (960)
Q Consensus       138 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L  216 (960)
                      +|++|++++|.+.+. +|..+.++++|++|++++|.++.                                         
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-----------------------------------------  132 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-----------------------------------------  132 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-----------------------------------------
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-----------------------------------------
Confidence            888888888887765 77777777778777777765432                                         


Q ss_pred             CEEEccCCcCCCCCCCCccCCCCCcEEeCCCC-CCCCChhHHhhcCCCCCCEEeccCc-ccCCC-CcccccCCC-CCCEE
Q 035852          217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHN-QFDNSLIATQLYGLCNLVFLDLSDN-NFQGP-IPDTIQNWT-SLRHL  292 (960)
Q Consensus       217 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L  292 (960)
                                  ..+..++++++|++|++++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +|++|
T Consensus       133 ------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          133 ------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             ------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             ------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence                        11223344455555555555 4442234555566666666666666 55533 345555666 66666


Q ss_pred             eCCCC--cCC-CcchhhhcCCCCCCEEeeeCcc-ccccccHHHHhcCCCCCEEeCCCCC-CCcccccccccCCCCCEEEc
Q 035852          293 DLSSN--HFS-YLIPEWLNKFSRLEYLSLSSNR-LQGRISSVLLENLSSIQSLDLSFNE-LEWKIPRSFSRFCNLRSISL  367 (960)
Q Consensus       293 ~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L  367 (960)
                      ++++|  .++ +.+|..+..+++|++|++++|. +++..+ ..+..+++|++|++++|. +.......+..+++|++|++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence            66666  343 3345555666666666666666 444444 455666677777776663 22222224556666666665


Q ss_pred             CCc
Q 035852          368 SGI  370 (960)
Q Consensus       368 ~~n  370 (960)
                      ++|
T Consensus       280 ~~~  282 (336)
T 2ast_B          280 FGI  282 (336)
T ss_dssp             TTS
T ss_pred             cCc
Confidence            555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.1e-22  Score=221.18  Aligned_cols=206  Identities=23%  Similarity=0.246  Sum_probs=145.8

Q ss_pred             CCcccEEECCCCccccCCCcCc--CCCCCCcEEECCCCeecccCC----cCCcCCCCCcEEecCCCcccccCchHHhhcC
Q 035852          631 WRYLLVLRLDNNKFTGKLPTSL--GALSLLRSLHLRNNNLSGTLP----VSLGNCTELETIDIGENEFSGNVPAWIGERF  704 (960)
Q Consensus       631 l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l  704 (960)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|++++..|    ..+..+++|++|++++|++++..|..+. .+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cC
Confidence            4568888888888887777777  777888888888888876554    3344677888888888888755555554 67


Q ss_pred             cccceeeecccccccc--Cc--hhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcc
Q 035852          705 PRMIILILRSNKFHGV--FP--LELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF  780 (960)
Q Consensus       705 ~~L~~L~L~~N~l~~~--~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  780 (960)
                      ++|++|++++|++.+.  ++  ..+..+++|++|++++|+++. +|....                              
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~------------------------------  217 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA------------------------------  217 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH------------------------------
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH------------------------------
Confidence            7888888888876642  22  223567778888888877751 121100                              


Q ss_pred             ccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhh---cccceeecCcccCcccCchhhccCCCCC
Q 035852          781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVL---RELRSLNLSHNFFSGRIPENIGAMALLE  857 (960)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~g~iP~~l~~l~~L~  857 (960)
                                         ...+.++.|+.||||+|++++.+|..++.+   ++|+.|+|++|+++ .+|..+.  ++|+
T Consensus       218 -------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~  275 (310)
T 4glp_A          218 -------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR  275 (310)
T ss_dssp             -------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred             -------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence                               011234556888888888888878777777   58888888888888 6787765  7888


Q ss_pred             EEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852          858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       858 ~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                      .|||++|++++. |. +..++.|+.|++++|+++.
T Consensus       276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            888888888863 33 5667888888888887763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=9.4e-22  Score=205.16  Aligned_cols=203  Identities=16%  Similarity=0.181  Sum_probs=133.3

Q ss_pred             CCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe-ecccCCcCCcCCCCCcEEecCC-CcccccCchHH
Q 035852          623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN-LSGTLPVSLGNCTELETIDIGE-NEFSGNVPAWI  700 (960)
Q Consensus       623 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~  700 (960)
                      .+|. +.  ++|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++ +|...
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~  100 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDA  100 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTS
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHH
Confidence            4555 33  367777777777776666677777777777777776 6655555777777777777777 77774 34332


Q ss_pred             hhcCcccceeeeccccccccCchhhcCCCCCC---eEeecCC-cCccccCccccccccchhccCCCCcccccCCCCCCCC
Q 035852          701 GERFPRMIILILRSNKFHGVFPLELCHLAFLK---ILVLAGN-NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFP  776 (960)
Q Consensus       701 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  776 (960)
                      +..+++|++|++++|++++ +|. +..+++|+   .|++++| ++++..+..+..++.                      
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~----------------------  156 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN----------------------  156 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS----------------------
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc----------------------
Confidence            2367777777777777775 554 66666666   7777777 665443333443333                      


Q ss_pred             CCccccccccccceEEEecccchhhhhhhcccc-EEEccCCcccccCchhhhhhcccceeecCccc-CcccCchhhccC-
Q 035852          777 GKFFNITEQFVEEELITLEGKTLTFKAVLRLLT-NIDLSNNKFSGEIPAEITVLRELRSLNLSHNF-FSGRIPENIGAM-  853 (960)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l-  853 (960)
                                                     |+ .|++++|+++ .+|......++|+.|+|++|+ +++..|..|+.+ 
T Consensus       157 -------------------------------L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~  204 (239)
T 2xwt_C          157 -------------------------------ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY  204 (239)
T ss_dssp             -------------------------------SEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred             -------------------------------ceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence                                           36 7777777777 555554444677777777774 775555667777 


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852          854 ALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN  888 (960)
Q Consensus       854 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N  888 (960)
                      ++|+.||+++|+++ .+|..  .+..|+.|+++++
T Consensus       205 ~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          205 SGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             BCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             cCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            77777777777776 34443  4566777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.7e-21  Score=204.71  Aligned_cols=213  Identities=16%  Similarity=0.144  Sum_probs=128.8

Q ss_pred             CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceee
Q 035852          632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI  711 (960)
Q Consensus       632 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~  711 (960)
                      ...++++++++.++ .+|..+.  ++++.|+|++|++++..|..|.++++|++|++++|++++.                
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------   74 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL----------------   74 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc----------------
Confidence            34667777777776 5665554  4677777777777666666666666666666666666643                


Q ss_pred             eccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceE
Q 035852          712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL  791 (960)
Q Consensus       712 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (960)
                               .|..+..+++|+.|++++|++++..|..+..++.                                     
T Consensus        75 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------------------------------  108 (251)
T 3m19_A           75 ---------SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ-------------------------------------  108 (251)
T ss_dssp             ---------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------------------------------
T ss_pred             ---------CHhHhccCCcCCEEECCCCcccccChhHhcccCC-------------------------------------
Confidence                     3333444555555555555555433333333222                                     


Q ss_pred             EEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852          792 ITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       792 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                                      |+.|+|++|++++..|..++.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++..|
T Consensus       109 ----------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          109 ----------------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             ----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ----------------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence                            3666666666665555556677777777777777776666567777888888888888877666


Q ss_pred             CCCCCCCCCCEEEcccCcceecCCCCcccCCC------CccccCCCCCccCccccCCcCCC
Q 035852          872 KNTVNLVFLSHFNISYNNLSGEVPDEAQFATF------DSSSYIGDEYLCGPVLKKLCTVV  926 (960)
Q Consensus       872 ~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~------~~~~~~gn~~lcg~~~~~~c~~~  926 (960)
                      ..+.+++.|+.|++++|++++..+.-..+..+      ......|+ .+|+.|-...|...
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             HHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            67777888888888888877764432222111      11112344 36776666677643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.3e-22  Score=223.83  Aligned_cols=230  Identities=18%  Similarity=0.227  Sum_probs=177.0

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCccccC-CCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK-LPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      +.++.+++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5677888888888877665 45688899999999988765 777788889999999999998888888888889999999


Q ss_pred             cCCC-ccccc-CchHHhhcCcccceeeeccc-ccccc-CchhhcCCC-CCCeEeecCCc--Cc-cccCccccccccchhc
Q 035852          687 IGEN-EFSGN-VPAWIGERFPRMIILILRSN-KFHGV-FPLELCHLA-FLKILVLAGNN--LS-GTIPTCISNFTAMATF  758 (960)
Q Consensus       687 Ls~N-~l~g~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~N~--l~-g~ip~~~~~l~~l~~~  758 (960)
                      +++| .+++. +|..+. .+++|++|++++| .+++. ++..+..++ +|+.|++++|.  ++ +.+|..+.        
T Consensus       149 L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--------  219 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--------  219 (336)
T ss_dssp             CTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------
T ss_pred             CCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--------
Confidence            9998 67753 555554 7889999999999 88764 677788888 99999999884  44 23333222        


Q ss_pred             cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCc-ccccCchhhhhhcccceeec
Q 035852          759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK-FSGEIPAEITVLRELRSLNL  837 (960)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~L  837 (960)
                                                                   .+++|+.|++++|. +++..+..++++++|+.|+|
T Consensus       220 ---------------------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          220 ---------------------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             ---------------------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             ---------------------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence                                                         34556899999999 78888889999999999999


Q ss_pred             Cccc-CcccCchhhccCCCCCEEECcCCcccccCCC-CCCCC-CCCCEEEcccCcceecCCCC
Q 035852          838 SHNF-FSGRIPENIGAMALLESLDFSSNRLEGEIPK-NTVNL-VFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       838 s~N~-l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l-~~L~~l~ls~N~l~g~iP~~  897 (960)
                      ++|. ++......++++++|+.|++++|     +|. .+..+ ..+..|++++|+++|.+|..
T Consensus       255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          255 SRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             CCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence            9995 33322236888999999999988     444 33333 34777789999999988863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.2e-20  Score=198.26  Aligned_cols=131  Identities=20%  Similarity=0.210  Sum_probs=98.1

Q ss_pred             CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852          608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI  687 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (960)
                      ...+.++++++.++ .+|..+.  +.++.|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45778999999998 5666665  68999999999999988889999999999999999999888888999999999999


Q ss_pred             CCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852          688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      ++|++++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus        91 ~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           91 ANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            9999984 44333225555666555555555444444444444444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=6.3e-21  Score=206.63  Aligned_cols=195  Identities=19%  Similarity=0.289  Sum_probs=141.7

Q ss_pred             ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      ...+++|++|++++|.++ .+| .+..+++|++|++++|++++. +. +..+++|++|++++|++++ +| .+. .+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~-~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIA-GLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGT-TCTTC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhc-CCCCC
Confidence            345667777777777776 344 567777788888888877743 33 7777888888888888774 44 343 67788


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV  787 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (960)
                      ++|++++|++++. | .+..+++|+.|++++|++++..|  ++.+                                   
T Consensus       110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l-----------------------------------  150 (308)
T 1h6u_A          110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGL-----------------------------------  150 (308)
T ss_dssp             CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGC-----------------------------------
T ss_pred             CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCC-----------------------------------
Confidence            8888888887753 3 27778888888888888764332  2222                                   


Q ss_pred             cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852          788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE  867 (960)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  867 (960)
                                        ++|+.|+|++|++++ +|. +..+++|+.|+|++|++++..|  +..+++|+.|+|++|+++
T Consensus       151 ------------------~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          151 ------------------TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             ------------------TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred             ------------------CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence                              334788888888885 443 7888888888888888886443  788888888888888888


Q ss_pred             ccCCCCCCCCCCCCEEEcccCccee
Q 035852          868 GEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       868 g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                      +..|  +.++++|+.|++++|++++
T Consensus       209 ~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          209 DVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             BCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cccc--ccCCCCCCEEEccCCeeec
Confidence            6554  7788888888888888875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.8e-21  Score=198.63  Aligned_cols=197  Identities=17%  Similarity=0.137  Sum_probs=162.7

Q ss_pred             cccEEecccccccCCCCCcccCCCcccEEECCCCc-cccCCCcCcCCCCCCcEEECCC-CeecccCCcCCcCCCCCcEEe
Q 035852          609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNK-FTGKLPTSLGALSLLRSLHLRN-NNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      .++.|++++|++++..+..+.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56777777777777677788889999999999997 8766666888999999999998 899877778889999999999


Q ss_pred             cCCCcccccCchHHhhcCcccc---eeeeccc-cccccCchhhcCCCCCC-eEeecCCcCccccCccccccccchhccCC
Q 035852          687 IGENEFSGNVPAWIGERFPRMI---ILILRSN-KFHGVFPLELCHLAFLK-ILVLAGNNLSGTIPTCISNFTAMATFLGS  761 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~  761 (960)
                      +++|++++ +|. +. .+++|+   +|++++| ++++..+..+..+++|+ .|++++|+++ .+|......         
T Consensus       112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~---------  178 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG---------  178 (239)
T ss_dssp             EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT---------
T ss_pred             CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC---------
Confidence            99999985 776 43 688888   9999999 89887777899999999 9999999997 666532211         


Q ss_pred             CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCc-ccccCchhhhhh-cccceeecCc
Q 035852          762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK-FSGEIPAEITVL-RELRSLNLSH  839 (960)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~L~Ls~  839 (960)
                                                                  ++|+.|+|++|+ +++..|..+..+ ++|+.|||++
T Consensus       179 --------------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          179 --------------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             --------------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             --------------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                                                        235899999995 997767789999 9999999999


Q ss_pred             ccCcccCchhhccCCCCCEEECcCCc
Q 035852          840 NFFSGRIPENIGAMALLESLDFSSNR  865 (960)
Q Consensus       840 N~l~g~iP~~l~~l~~L~~L~Ls~N~  865 (960)
                      |++++ +|..  .+++|+.|+++++.
T Consensus       215 N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          215 TSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             Ccccc-CChh--HhccCceeeccCcc
Confidence            99984 6654  78899999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=7e-20  Score=198.40  Aligned_cols=194  Identities=24%  Similarity=0.342  Sum_probs=118.3

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCC
Q 035852          108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL  187 (960)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l  187 (960)
                      ..++++|++|++++|.+..  ++ .+..+++|++|++++|++.+..+  ++++++|++|++++|.++.+     ..+..+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-----~~~~~l  106 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-----SAIAGL  106 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-----GGGTTC
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-----hhhcCC
Confidence            4467788888888888875  44 57788888888888888776544  88888888888888877654     235566


Q ss_pred             CccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852          188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF  267 (960)
Q Consensus       188 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  267 (960)
                      ++|++|++++|.+++++    .+..+++|++|++++|.+++..+  +..+++|++|++++|.++ +. +. +..+++|++
T Consensus       107 ~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~-~~-l~~l~~L~~  177 (308)
T 1h6u_A          107 QSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DL-TP-LANLSKLTT  177 (308)
T ss_dssp             TTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GG-GTTCTTCCE
T ss_pred             CCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CC-hh-hcCCCCCCE
Confidence            66666666666665532    24555566666666665555443  555555555555555554 21 22 455555555


Q ss_pred             EeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCcccc
Q 035852          268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ  324 (960)
Q Consensus       268 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  324 (960)
                      |++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|.++
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            5555555553222  4455555555555555554322  445555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.3e-20  Score=218.68  Aligned_cols=187  Identities=24%  Similarity=0.327  Sum_probs=99.3

Q ss_pred             cccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecC
Q 035852          609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIG  688 (960)
Q Consensus       609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  688 (960)
                      .++.|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|+.|++++|++++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555554 444332  45666666666655 444   234556666666666654 444 433  56666666


Q ss_pred             CCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccccc
Q 035852          689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQ  768 (960)
Q Consensus       689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~  768 (960)
                      +|++++ +|.    .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +|. +.  ++              
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~--------------  181 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES--------------  181 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence            666653 554    24556666666665554 343   34556666666665554 443 22  11              


Q ss_pred             CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhccc-------ceeecCccc
Q 035852          769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLREL-------RSLNLSHNF  841 (960)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~  841 (960)
                                                             |+.|+|++|+|+ .+|. +..  +|       +.|+|++|+
T Consensus       182 ---------------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          182 ---------------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             ---------------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred             ---------------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence                                                   255566666555 4554 433  44       556666666


Q ss_pred             CcccCchhhccCCCCCEEECcCCcccccCCCCCCCC
Q 035852          842 FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL  877 (960)
Q Consensus       842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l  877 (960)
                      |+ .||+.+..+++|+.|||++|+++|.+|..+.++
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            65 355555556666666666666666555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=2.1e-20  Score=216.97  Aligned_cols=184  Identities=23%  Similarity=0.350  Sum_probs=159.2

Q ss_pred             CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceee
Q 035852          632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI  711 (960)
Q Consensus       632 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~  711 (960)
                      .+|+.|++++|.+++ +|..+.  ++|++|+|++|+++ .+|   ..+++|++|++++|++++ +|. +. .  +|+.|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEE
Confidence            389999999999986 787664  88999999999999 788   457999999999999996 887 54 2  999999


Q ss_pred             eccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceE
Q 035852          712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL  791 (960)
Q Consensus       712 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (960)
                      +++|++++ +|.   .+++|+.|++++|++++ +|.   .+                                       
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l---------------------------------------  159 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LP---------------------------------------  159 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC---------------------------------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cC---------------------------------------
Confidence            99999998 666   68999999999999986 665   12                                       


Q ss_pred             EEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCC-------CEEECcCC
Q 035852          792 ITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALL-------ESLDFSSN  864 (960)
Q Consensus       792 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L-------~~L~Ls~N  864 (960)
                                    ++|+.|+|++|+|++ +|. +.  ++|+.|||++|+|+ .+|. +..  +|       +.|+|++|
T Consensus       160 --------------~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          160 --------------TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN  217 (571)
T ss_dssp             --------------TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS
T ss_pred             --------------CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC
Confidence                          235899999999996 887 76  89999999999999 7887 665  77       99999999


Q ss_pred             cccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852          865 RLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       865 ~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                      +++ .||..+.++++|+.|++++|+++|.+|..
T Consensus       218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            999 69999999999999999999999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=9e-20  Score=185.62  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCc
Q 035852          612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENE  691 (960)
Q Consensus       612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (960)
                      .++++++.++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45555555552 33333  2467777777777765555556667777777777777765545556666777777777776


Q ss_pred             ccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccc
Q 035852          692 FSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGT  744 (960)
Q Consensus       692 l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  744 (960)
                      +++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus        88 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A           88 LQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee
Confidence            663 3333322566666666666666655555555666666666666666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=5.6e-20  Score=187.18  Aligned_cols=175  Identities=17%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852          635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS  714 (960)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~  714 (960)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|+++ .+|...+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            45667777666 455443  346777777777776555555666666666666666666 33333222344444444444


Q ss_pred             ccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEe
Q 035852          715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL  794 (960)
Q Consensus       715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (960)
                      |++++..+..+..+++|                                                               
T Consensus        86 n~l~~~~~~~~~~l~~L---------------------------------------------------------------  102 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQL---------------------------------------------------------------  102 (208)
T ss_dssp             SCCCCCCTTTTTTCTTC---------------------------------------------------------------
T ss_pred             CcCCccCHhHhcCccCC---------------------------------------------------------------
Confidence            44443333333333444                                                               


Q ss_pred             cccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCC
Q 035852          795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT  874 (960)
Q Consensus       795 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l  874 (960)
                                    +.|+|++|++++..|..++.+++|+.|+|++|++++..+..++.+++|+.|++++|.+.+..    
T Consensus       103 --------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----  164 (208)
T 2o6s_A          103 --------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----  164 (208)
T ss_dssp             --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----
T ss_pred             --------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----
Confidence                          55555555555444444556666666666666666554445666666666666666665433    


Q ss_pred             CCCCCCCEEEcccCcceecCCCC
Q 035852          875 VNLVFLSHFNISYNNLSGEVPDE  897 (960)
Q Consensus       875 ~~l~~L~~l~ls~N~l~g~iP~~  897 (960)
                         +.|++|+++.|+++|.||..
T Consensus       165 ---~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          165 ---PGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             ---TTTHHHHHHHHHCTTTBBCT
T ss_pred             ---CCHHHHHHHHHhCCceeecc
Confidence               35666666667777766653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=8.3e-19  Score=193.88  Aligned_cols=220  Identities=18%  Similarity=0.163  Sum_probs=116.2

Q ss_pred             ccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCc-CcCCCCCCcE-EECCCCeecccCCcCCcCCCCCcEEec
Q 035852          610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPT-SLGALSLLRS-LHLRNNNLSGTLPVSLGNCTELETIDI  687 (960)
Q Consensus       610 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (960)
                      ++.|++++|+++...+.+|.++++|++|+|++|++.+.+|. .|.+++++++ +.+.+|++++..|..|..+++|++|++
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            44444444444433344566666666666666666544443 4555555543 444556666555566666666666666


Q ss_pred             CCCcccccCchHHhhcCcccceeeecc-ccccccCchhhcCCC-CCCeEeecCCcCccccCccccccccchhccCCCCcc
Q 035852          688 GENEFSGNVPAWIGERFPRMIILILRS-NKFHGVFPLELCHLA-FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIY  765 (960)
Q Consensus       688 s~N~l~g~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~  765 (960)
                      ++|++++ +|...+....++..+++.+ +++....+..+..+. .++.|++++|+++ .||......+            
T Consensus       112 ~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~------------  177 (350)
T 4ay9_X          112 SNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT------------  177 (350)
T ss_dssp             EEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE------------
T ss_pred             ccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc------------
Confidence            6666653 3322221344555565544 344443334444443 4666677777665 3333222211            


Q ss_pred             cccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCch-hhhhhcccceeecCcccCcc
Q 035852          766 TIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPA-EITVLRELRSLNLSHNFFSG  844 (960)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g  844 (960)
                                                               +++.+++++|+..+.||. .|+.+++|+.||||+|+|+ 
T Consensus       178 -----------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-  215 (350)
T 4ay9_X          178 -----------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-  215 (350)
T ss_dssp             -----------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-
T ss_pred             -----------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-
Confidence                                                     235666654333335554 3566666777777777666 


Q ss_pred             cCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852          845 RIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN  888 (960)
Q Consensus       845 ~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N  888 (960)
                      .+|.  +.+.+|+.|.+.++.--..+|. +.++++|+.++++++
T Consensus       216 ~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          216 SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             ccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            3443  2244555555555544445663 566666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=6.3e-19  Score=194.84  Aligned_cols=244  Identities=17%  Similarity=0.151  Sum_probs=167.2

Q ss_pred             cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcE-EecC
Q 035852          611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELET-IDIG  688 (960)
Q Consensus       611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~-L~Ls  688 (960)
                      +.++.++++++ .+|..+  .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45677777777 566655  2578888888888885545567888888888888888766655 35777777664 5566


Q ss_pred             CCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCc-cccccccchhccCCCCcccc
Q 035852          689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT-CISNFTAMATFLGSDSIYTI  767 (960)
Q Consensus       689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~l~~~~~~~~~~~~  767 (960)
                      .|+++...|..+ ..+++|++|++++|++.+..+..+.....+..+++.++.-...+|. .+..+               
T Consensus        89 ~N~l~~l~~~~f-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~---------------  152 (350)
T 4ay9_X           89 ANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL---------------  152 (350)
T ss_dssp             ETTCCEECTTSB-CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred             CCcccccCchhh-hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc---------------
Confidence            778874434443 3678888888888888776666666666777777766433223332 22211               


Q ss_pred             cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852          768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP  847 (960)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP  847 (960)
                                                           ...++.|+|++|+|+ .||.......+|+.|++++|+..+.||
T Consensus       153 -------------------------------------~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          153 -------------------------------------SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP  194 (350)
T ss_dssp             -------------------------------------BSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred             -------------------------------------chhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCC
Confidence                                                 123588999999999 677777788899999999755555677


Q ss_pred             h-hhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCcc
Q 035852          848 E-NIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLC  915 (960)
Q Consensus       848 ~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc  915 (960)
                      + .|+.+++|+.||||+|+++ .+|..  .+..|+.|.+.+++--..+|.-..|..+..... +|+.-|
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c  259 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC  259 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred             HHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence            5 5799999999999999999 55553  245667777666655567886545555444332 344444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.9e-19  Score=183.17  Aligned_cols=157  Identities=17%  Similarity=0.180  Sum_probs=120.8

Q ss_pred             cEEecCCCcccccCchHHhhcCcccceeeeccccccccCc-hhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852          683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP-LELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS  761 (960)
Q Consensus       683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~  761 (960)
                      +.+++++|.++ .+|..+   .+.+++|++++|++++..| ..+..+++|+.|++++|++++..|..+..++.|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            35666666665 455543   2345666666666665544 346677888888888888876555555554443      


Q ss_pred             CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852          762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF  841 (960)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  841 (960)
                                                                     +.|+|++|++++..|..++.+++|+.|+|++|+
T Consensus        84 -----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           84 -----------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             -----------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             -----------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence                                                           788888888887777778889999999999999


Q ss_pred             CcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852          842 FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      +++..|..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            9988889999999999999999999988899999999999999999999887653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=2.4e-18  Score=176.22  Aligned_cols=156  Identities=16%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeec
Q 035852          635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILR  713 (960)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~  713 (960)
                      +.+++++|.++ .+|..+.  ..+++|+|++|++++..| ..|..                         +++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~-------------------------l~~L~~L~L~   65 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK-------------------------LPQLRKINFS   65 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGG-------------------------CTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhcc-------------------------CCCCCEEECC
Confidence            45666666665 3454432  234555555555554433 22444                         4555555555


Q ss_pred             cccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEE
Q 035852          714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT  793 (960)
Q Consensus       714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (960)
                      +|++++..+..+..+++|+.|++++|++++..|..+..++.|                                      
T Consensus        66 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------  107 (220)
T 2v70_A           66 NNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL--------------------------------------  107 (220)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC--------------------------------------
T ss_pred             CCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC--------------------------------------
Confidence            555554445556666777777777777765555445444333                                      


Q ss_pred             ecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852          794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       794 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                                     +.|+|++|++++..|..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|.+++..+
T Consensus       108 ---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          108 ---------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ---------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ---------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                           677777777777777777888888888888888888778888888888888888888876554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.5e-18  Score=182.39  Aligned_cols=79  Identities=23%  Similarity=0.339  Sum_probs=45.9

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      |+.|++++|++++.  ..++.+++|+.|+|++|++++..|  ++.+++|+.|++++|++++ +|. +.++++|+.|++++
T Consensus       136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS  209 (291)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred             CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence            35556666665533  345566666666666666665433  5666666666666666654 332 55666666666666


Q ss_pred             Cccee
Q 035852          888 NNLSG  892 (960)
Q Consensus       888 N~l~g  892 (960)
                      |+++.
T Consensus       210 n~i~~  214 (291)
T 1h6t_A          210 QECLN  214 (291)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            66554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.2e-18  Score=202.50  Aligned_cols=225  Identities=22%  Similarity=0.301  Sum_probs=144.8

Q ss_pred             cCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcE
Q 035852          581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRS  660 (960)
Q Consensus       581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  660 (960)
                      .+..+.+..+.+...++      ...++.|+.|++++|.+... | .+..+++|+.|+|++|++++..|  +..+++|+.
T Consensus        22 ~l~~l~l~~~~i~~~~~------~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC------HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHhccCCCcccccc------hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            44455566665554332      22356677778888777643 3 47777888888888888775444  777788888


Q ss_pred             EECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCc
Q 035852          661 LHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNN  740 (960)
Q Consensus       661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  740 (960)
                      |+|++|++.+ +| .+..+++|+.|+|++|++++ +|. +. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|+
T Consensus        92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A           92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred             EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence            8888888774 33 67777888888888888774 443 43 577777888877777764  467777777777777777


Q ss_pred             CccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccc
Q 035852          741 LSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG  820 (960)
Q Consensus       741 l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g  820 (960)
                      +++..|  +..++                                                     .|+.|+|++|+|++
T Consensus       165 l~~~~~--l~~l~-----------------------------------------------------~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          165 ISDIVP--LAGLT-----------------------------------------------------KLQNLYLSKNHISD  189 (605)
T ss_dssp             CCCCGG--GTTCT-----------------------------------------------------TCCEEECCSSCCCB
T ss_pred             CCCchh--hccCC-----------------------------------------------------CCCEEECcCCCCCC
Confidence            776544  33332                                                     33677777777775


Q ss_pred             cCchhhhhhcccceeecCcccCccc---------Cchhh----ccCCCCCEEECcCCcccccCCCCCCCCCC
Q 035852          821 EIPAEITVLRELRSLNLSHNFFSGR---------IPENI----GAMALLESLDFSSNRLEGEIPKNTVNLVF  879 (960)
Q Consensus       821 ~ip~~l~~l~~L~~L~Ls~N~l~g~---------iP~~l----~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  879 (960)
                       +| .+..+++|+.|+|++|.+++.         +|..+    +.....+.+....+-..|.+|..+.++..
T Consensus       190 -l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~  259 (605)
T 1m9s_A          190 -LR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN  259 (605)
T ss_dssp             -CG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred             -Ch-HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence             33 577777777777777777664         22222    22233444444555555666665555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.6e-18  Score=183.18  Aligned_cols=174  Identities=23%  Similarity=0.344  Sum_probs=134.6

Q ss_pred             ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      +..+++|++|++++|.+.. +| .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +|. +. .+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LK-DLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GT-TCTTC
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hc-cCCCC
Confidence            3456778888888888773 33 47778888888888888875433  7788888888888888874 443 44 68888


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV  787 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (960)
                      ++|++++|++++.  ..+..+++|+.|++++|++++.  ..++.                                    
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~------------------------------------  154 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR------------------------------------  154 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG------------------------------------
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc------------------------------------
Confidence            8888888888764  4677888999999999988753  22322                                    


Q ss_pred             cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852          788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE  867 (960)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  867 (960)
                                       +++|+.|+|++|++++..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|++++|+++
T Consensus       155 -----------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          155 -----------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             -----------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             -----------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence                             2345899999999986555  8899999999999999986 55 4899999999999999998


Q ss_pred             cc
Q 035852          868 GE  869 (960)
Q Consensus       868 g~  869 (960)
                      ..
T Consensus       214 ~~  215 (291)
T 1h6t_A          214 NK  215 (291)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=9.9e-18  Score=171.68  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=104.7

Q ss_pred             cEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCC
Q 035852          683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSD  762 (960)
Q Consensus       683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~  762 (960)
                      +.+++++|.++ .+|..+   .++++.|++++|++++..+..+..+++|+.|++++|++++..|..+..++.|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            34555555555 455433   2456666666666665555566667777777777777766656655544433       


Q ss_pred             CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852          763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF  842 (960)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  842 (960)
                                                                    +.|+|++|+|++..+..+..+++|+.|+|++|++
T Consensus        83 ----------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l  116 (220)
T 2v9t_B           83 ----------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI  116 (220)
T ss_dssp             ----------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCC
Confidence                                                          6777777777744444467777788888888888


Q ss_pred             cccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852          843 SGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG  892 (960)
Q Consensus       843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g  892 (960)
                      ++..|..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++..
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            77777777888888888888888887777777778888888888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=1.5e-17  Score=171.51  Aligned_cols=156  Identities=26%  Similarity=0.248  Sum_probs=120.7

Q ss_pred             CcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852          682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS  761 (960)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~  761 (960)
                      -+.++.++++++ .+|..+   .++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++.       
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-------   89 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------   89 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence            456777777665 666543   367777777777777777777788888888888888886433333444333       


Q ss_pred             CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852          762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF  841 (960)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  841 (960)
                                                                    |+.|+|++|+|++..|..+..+++|+.|+|++|+
T Consensus        90 ----------------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           90 ----------------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             ----------------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----------------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                                          4788888888887666667888899999999999


Q ss_pred             CcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852          842 FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      ++ .+|..++.+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            88 788888999999999999999987767778889999999999998887665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=8.2e-19  Score=211.75  Aligned_cols=131  Identities=21%  Similarity=0.321  Sum_probs=84.7

Q ss_pred             cccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccc
Q 035852          615 LEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG  694 (960)
Q Consensus       615 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  694 (960)
                      ++.|++. ..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+++ .+|..|.++++|++|+|++|+++ 
T Consensus       208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            3344444 45566777777777777777776 66666667777777777777777 67777777777777777777777 


Q ss_pred             cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccc
Q 035852          695 NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISN  751 (960)
Q Consensus       695 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  751 (960)
                      .+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|+++|.+|..+..
T Consensus       284 ~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          284 SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            6677665 5777777777777775 56666777777777777777777776665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1.8e-18  Score=208.70  Aligned_cols=195  Identities=17%  Similarity=0.180  Sum_probs=128.3

Q ss_pred             EECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccc
Q 035852          637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNK  716 (960)
Q Consensus       637 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~  716 (960)
                      ++++.|++. ..|..+..++.|+.|+|++|++. .+|..+.++++|++|+|++|+++ .+|..+. .+++|++|+|++|+
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNR  281 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCc
Confidence            344556655 56788899999999999999998 78888889999999999999999 8998886 79999999999999


Q ss_pred             ccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecc
Q 035852          717 FHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEG  796 (960)
Q Consensus       717 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (960)
                      |+ .+|..++.+++|++|+|++|.++ .+|..|++++.|                                         
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-----------------------------------------  318 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL-----------------------------------------  318 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-----------------------------------------
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-----------------------------------------
Confidence            99 78999999999999999999996 788877766655                                         


Q ss_pred             cchhhhhhhccccEEEccCCcccccCchhhhhhcc-cceeecCcccCcccCchhhccCCCCCEEECcCC--------ccc
Q 035852          797 KTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE-LRSLNLSHNFFSGRIPENIGAMALLESLDFSSN--------RLE  867 (960)
Q Consensus       797 ~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N--------~l~  867 (960)
                                  +.|+|++|+|+|.+|..++.+.. +..++|++|.++|.+|+.      |+.|++++|        .+.
T Consensus       319 ------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~  380 (727)
T 4b8c_D          319 ------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQ  380 (727)
T ss_dssp             ------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------
T ss_pred             ------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcc
Confidence                        88999999999999999887643 345899999999999875      455667777        455


Q ss_pred             ccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852          868 GEIPKNTVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       868 g~iP~~l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      +.++..+.++..+....+++|-+.+....
T Consensus       381 ~~~~~~~~~l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          381 QSTEHLATDLAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ---------------------CCCGGGCC
T ss_pred             ccccchhhcccccceeeeeccccccccCc
Confidence            55555667778888889999988765544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=4.5e-20  Score=215.72  Aligned_cols=87  Identities=26%  Similarity=0.372  Sum_probs=72.6

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccC-CCCCCCCCCCCEEEcc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI-PKNTVNLVFLSHFNIS  886 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~l~ls  886 (960)
                      |+.|+|++|+|+ .+|..++++++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..++++++|+.|+++
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            378888888888 788888888888888888888886 67 7888888888888888888877 8888888888888888


Q ss_pred             cCcceecCCCC
Q 035852          887 YNNLSGEVPDE  897 (960)
Q Consensus       887 ~N~l~g~iP~~  897 (960)
                      +|+++|.+|..
T Consensus       542 ~N~l~~~~~~~  552 (567)
T 1dce_A          542 GNSLCQEEGIQ  552 (567)
T ss_dssp             TSGGGGSSSCT
T ss_pred             CCcCCCCccHH
Confidence            88888876644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.1e-19  Score=210.09  Aligned_cols=197  Identities=18%  Similarity=0.173  Sum_probs=158.7

Q ss_pred             cCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe-------------ecccCCcCCcCCCCCcEEe-cCCCcccc
Q 035852          629 MNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN-------------LSGTLPVSLGNCTELETID-IGENEFSG  694 (960)
Q Consensus       629 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~g  694 (960)
                      ..++.|+.|+|++|+++ .+|..++.+++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            45788999999999997 789999999999999998775             5667778888888898888 6776554 


Q ss_pred             cCchH------Hhh-cCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852          695 NVPAW------IGE-RFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI  767 (960)
Q Consensus       695 ~ip~~------~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~  767 (960)
                      .++..      +.. ....|+.|++++|++++ +|. ++.+++|+.|++++|+++ .+|..+++++.|            
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------  488 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------  488 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC------------
Confidence            23321      100 12368899999999986 565 888999999999999998 788877666554            


Q ss_pred             cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC-
Q 035852          768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI-  846 (960)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-  846 (960)
                                                               +.|+|++|+|++ +| .++++++|+.|+|++|++++.+ 
T Consensus       489 -----------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~  525 (567)
T 1dce_A          489 -----------------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAA  525 (567)
T ss_dssp             -----------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred             -----------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCC
Confidence                                                     899999999996 78 8999999999999999999887 


Q ss_pred             chhhccCCCCCEEECcCCcccccCCCC---CCCCCCCCEEEc
Q 035852          847 PENIGAMALLESLDFSSNRLEGEIPKN---TVNLVFLSHFNI  885 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~l~l  885 (960)
                      |..++.+++|+.|+|++|++++.+|..   +..+++|+.||+
T Consensus       526 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999999999999999876643   123678888864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.3e-17  Score=192.62  Aligned_cols=126  Identities=30%  Similarity=0.400  Sum_probs=58.0

Q ss_pred             CCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852          606 GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI  685 (960)
Q Consensus       606 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (960)
                      .++.|+.|+|++|++++..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++.+ + +.+..+++|+.|
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  136 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence            34445555555555444332  4444555555555554442 22 34444555555555555443 1 234444555555


Q ss_pred             ecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852          686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      +|++|++++ + ..+. .+++|+.|+|++|++.+..|  +..+++|+.|+|++|+++
T Consensus       137 ~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          137 YLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            555555443 2 1222 34455555555555544333  444455555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.4e-17  Score=182.89  Aligned_cols=179  Identities=22%  Similarity=0.233  Sum_probs=144.8

Q ss_pred             cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcC-CCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCC
Q 035852          611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLG-ALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE  689 (960)
Q Consensus       611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  689 (960)
                      +.++++++.++. +|..+.  ..++.|+|++|++++..+..+. .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            578999999885 666554  4689999999999988777787 899999999999999988888899999999999999


Q ss_pred             CcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcc-ccccccchhccCCCCccccc
Q 035852          690 NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTC-ISNFTAMATFLGSDSIYTIQ  768 (960)
Q Consensus       690 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~l~~~~~~~~~~~~~  768 (960)
                      |++++..+..+ ..+++|++|+|++|++++..|..|..+++|+.|+|++|++++ +|.. +..+                
T Consensus        98 N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~----------------  159 (361)
T 2xot_A           98 NHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDG----------------  159 (361)
T ss_dssp             SCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC------------------
T ss_pred             CcCCcCCHHHh-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCc----------------
Confidence            99985444444 479999999999999998888899999999999999999985 4432 2111                


Q ss_pred             CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcc--cceeecCcccCcc
Q 035852          769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE--LRSLNLSHNFFSG  844 (960)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~--L~~L~Ls~N~l~g  844 (960)
                                                        ..+++|+.|||++|+|++..+..+..++.  ++.|+|++|.+..
T Consensus       160 ----------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          160 ----------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ----------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                                              12345689999999999666677888877  4889999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=3.4e-17  Score=167.67  Aligned_cols=153  Identities=20%  Similarity=0.262  Sum_probs=100.4

Q ss_pred             cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852          635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS  714 (960)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~  714 (960)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|+|++|++++                    
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------------------   70 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------------------   70 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence            46677777766 5565443  566666666666665555556666666666666665554                    


Q ss_pred             ccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEe
Q 035852          715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL  794 (960)
Q Consensus       715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (960)
                           ..|..|..+++|++|+|++|++++..+..+..++                                         
T Consensus        71 -----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-----------------------------------------  104 (220)
T 2v9t_B           71 -----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-----------------------------------------  104 (220)
T ss_dssp             -----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred             -----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC-----------------------------------------
Confidence                 4444555566666666666666533222233332                                         


Q ss_pred             cccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc
Q 035852          795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG  868 (960)
Q Consensus       795 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g  868 (960)
                                  +|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+..
T Consensus       105 ------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          105 ------------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ------------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence                        23677777777777777777788888888888888887777778888888888888888865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2e-17  Score=166.40  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             cEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852          809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN  888 (960)
Q Consensus       809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N  888 (960)
                      +.|++++|++++..|..++.+++|+.|+|++|.+.+.+| .++.+++|+.|++++|++++ +| .+.++++|++|++++|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            667777777776677777777777777777776334555 57777777777777777765 33 5667777777777777


Q ss_pred             ccee
Q 035852          889 NLSG  892 (960)
Q Consensus       889 ~l~g  892 (960)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            7653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=6e-17  Score=167.07  Aligned_cols=157  Identities=18%  Similarity=0.261  Sum_probs=104.8

Q ss_pred             cccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeee
Q 035852          633 YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILIL  712 (960)
Q Consensus       633 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L  712 (960)
                      +.+.++.+++.++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+++ .+|...            
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~------------   83 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGV------------   83 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT------------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhh------------
Confidence            3566788887776 6666554  67777777777777766777777777777777777775 444333            


Q ss_pred             ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852          713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI  792 (960)
Q Consensus       713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (960)
                                  +..+++|+.|++++|++++..+..+..++.                                      
T Consensus        84 ------------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~--------------------------------------  113 (229)
T 3e6j_A           84 ------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVH--------------------------------------  113 (229)
T ss_dssp             ------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred             ------------cccCCCcCEEECCCCcCCccChhHhCcchh--------------------------------------
Confidence                        344555555555555555433333333322                                      


Q ss_pred             EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852          793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                                     |+.|+|++|+|+ .+|..++.+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+..+
T Consensus       114 ---------------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          114 ---------------LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ---------------CCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ---------------hCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence                           366777777776 677777777778888888888876666667778888888888888776544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=2.7e-17  Score=165.48  Aligned_cols=154  Identities=21%  Similarity=0.240  Sum_probs=93.9

Q ss_pred             CCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCe
Q 035852          654 ALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKI  733 (960)
Q Consensus       654 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  733 (960)
                      .+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..|..+..+++|+.
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3444555555555554 334 3555555555555555443 222 333 4666666666666666656666666777777


Q ss_pred             EeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEc
Q 035852          734 LVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL  813 (960)
Q Consensus       734 L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  813 (960)
                      |++++|++++..|..++.++.                                                     |+.|+|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~-----------------------------------------------------L~~L~L  143 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPK-----------------------------------------------------VNSIDL  143 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSS-----------------------------------------------------CCEEEC
T ss_pred             EEecCCccCcHhHHHHhhCCC-----------------------------------------------------CCEEEc
Confidence            777777776655555544333                                                     367777


Q ss_pred             cCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc
Q 035852          814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG  868 (960)
Q Consensus       814 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g  868 (960)
                      ++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            7777334566 57778888888888888875 44 67788888888888887754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=8.5e-17  Score=178.44  Aligned_cols=177  Identities=24%  Similarity=0.217  Sum_probs=145.6

Q ss_pred             CeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccC-CCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852          562 GTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETN-GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD  640 (960)
Q Consensus       562 ~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  640 (960)
                      +.++++++.++......+..++.|++++|++++..+.    .+. ++++|+.|++++|++++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            4566666666654334456677777777777654332    233 67899999999999998888899999999999999


Q ss_pred             CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHh---hcCcccceeeeccccc
Q 035852          641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIG---ERFPRMIILILRSNKF  717 (960)
Q Consensus       641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~---~~l~~L~~L~L~~N~l  717 (960)
                      +|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+++ .+|..++   ..+++|+.|+|++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence            99999877778999999999999999999888999999999999999999999 5777664   3689999999999999


Q ss_pred             cccCchhhcCCCC--CCeEeecCCcCcc
Q 035852          718 HGVFPLELCHLAF--LKILVLAGNNLSG  743 (960)
Q Consensus       718 ~~~~p~~l~~l~~--L~~L~Ls~N~l~g  743 (960)
                      ++..+..+..++.  ++.|++++|++..
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccC
Confidence            9777778888887  4889999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=3.2e-17  Score=164.00  Aligned_cols=110  Identities=20%  Similarity=0.299  Sum_probs=82.6

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      |+.|+|++|++++.+|..++.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++.+|..+..+++|++|++++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            47788888888877788888888888888888888888777788888888888888888888888888888888888888


Q ss_pred             CcceecCCCCcccCC-CCccccCCCCCccCcc
Q 035852          888 NNLSGEVPDEAQFAT-FDSSSYIGDEYLCGPV  918 (960)
Q Consensus       888 N~l~g~iP~~~~~~~-~~~~~~~gn~~lcg~~  918 (960)
                      |+++|..|.. .+.. +....+.++...|+.|
T Consensus       136 N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          136 NPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCccCcCcch-HHHHHHHHcCCCCCCCCCCCC
Confidence            8888776632 1111 2222345555567654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.6e-17  Score=172.49  Aligned_cols=171  Identities=20%  Similarity=0.263  Sum_probs=99.1

Q ss_pred             CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852          630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII  709 (960)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  709 (960)
                      ++.++..+++++|.+++. + .+..+++|+.|++++|+++ .+| .+..+++|++|++++|++++ +|.           
T Consensus        17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-----------   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-----------   80 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-----------
T ss_pred             HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-----------
Confidence            345566666777766632 2 4556666666666666665 344 45556666666666666553 222           


Q ss_pred             eeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852          710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE  789 (960)
Q Consensus       710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (960)
                                     +..+++|+.|++++|++++ +|....                                       
T Consensus        81 ---------------l~~l~~L~~L~L~~N~l~~-l~~~~~---------------------------------------  105 (263)
T 1xeu_A           81 ---------------LKDLTKLEELSVNRNRLKN-LNGIPS---------------------------------------  105 (263)
T ss_dssp             ---------------GTTCSSCCEEECCSSCCSC-CTTCCC---------------------------------------
T ss_pred             ---------------hccCCCCCEEECCCCccCC-cCcccc---------------------------------------
Confidence                           4445555555555555542 121000                                       


Q ss_pred             eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccccc
Q 035852          790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGE  869 (960)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~  869 (960)
                                      +.|+.|+|++|++++ +| .++.+++|+.|||++|++++. | .++.+++|+.|+|++|++++.
T Consensus       106 ----------------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          106 ----------------ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             ----------------SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ----------------CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence                            123566666666664 33 466666677777777776653 3 466677777777777777655


Q ss_pred             CCCCCCCCCCCCEEEcccCcceec
Q 035852          870 IPKNTVNLVFLSHFNISYNNLSGE  893 (960)
Q Consensus       870 iP~~l~~l~~L~~l~ls~N~l~g~  893 (960)
                        ..+..++.|+.|++++|++++.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5566677777777777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=6.4e-17  Score=170.54  Aligned_cols=170  Identities=21%  Similarity=0.285  Sum_probs=118.9

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      +..+..+++++|.+++..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..|  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            556777889999988654  5788999999999999998 566 78999999999999999996544  99999999999


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      +++|++++ +|...  . ++|+.|++++|++++. + .+..+++|                                   
T Consensus        92 L~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L-----------------------------------  130 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNL-----------------------------------  130 (263)
T ss_dssp             CCSSCCSC-CTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTC-----------------------------------
T ss_pred             CCCCccCC-cCccc--c-CcccEEEccCCccCCC-h-hhcCcccc-----------------------------------
Confidence            99999984 54321  1 4555555555554432 1 23334444                                   


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI  846 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  846 (960)
                                                                +.|+|++|++++ +| .++.+++|+.|+|++|++++. 
T Consensus       131 ------------------------------------------~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A          131 ------------------------------------------EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             ------------------------------------------CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             ------------------------------------------cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-
Confidence                                                      555555555553 23 456666666666666666654 


Q ss_pred             chhhccCCCCCEEECcCCccccc
Q 035852          847 PENIGAMALLESLDFSSNRLEGE  869 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g~  869 (960)
                       +.+..+++|+.|++++|++++.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             4566666777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=8.4e-17  Score=160.94  Aligned_cols=132  Identities=23%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             cEEecCCCcccccCchHHhhcCcccceeeeccccccccCch-hhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852          683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL-ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS  761 (960)
Q Consensus       683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~  761 (960)
                      +++++++|+++ .+|..+.   +++++|++++|++++..+. .+..+++|+.|++++|++++..|..+..++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            45555555553 4554332   2555666666665544443 35666677777777777766666555544433      


Q ss_pred             CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852          762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF  841 (960)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  841 (960)
                                                                     +.|+|++|+|++..|..++.+++|+.|+|++|+
T Consensus        81 -----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           81 -----------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             -----------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             -----------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence                                                           667777777776666667777777777777777


Q ss_pred             CcccCchhhccCCCCCEEECcCCcccccCC
Q 035852          842 FSGRIPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                      +++.+|..++.+++|+.|+|++|.+++..|
T Consensus       114 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            777777777777777777777777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.7e-15  Score=148.07  Aligned_cols=88  Identities=25%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCccc-CchhhccCCCCCEEECcCCcccccCC---CCCCCCCCCCEE
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR-IPENIGAMALLESLDFSSNRLEGEIP---KNTVNLVFLSHF  883 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~l~g~iP---~~l~~l~~L~~l  883 (960)
                      |+.|+|++|++++.+|..++.+++|+.|+|++|++++. .+..++.+++|+.|++++|++++..+   ..+..++.|++|
T Consensus        73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence            36677777777666666666677777777777777653 22566777777777777777775444   356667777777


Q ss_pred             EcccCcceecCCC
Q 035852          884 NISYNNLSGEVPD  896 (960)
Q Consensus       884 ~ls~N~l~g~iP~  896 (960)
                      ++++|.+. ++|.
T Consensus       153 ~l~~n~~~-~~~~  164 (168)
T 2ell_A          153 DGYDREDQ-EAPD  164 (168)
T ss_dssp             TTEETTSC-BCCS
T ss_pred             cCCCCChh-hccc
Confidence            77777665 3443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.1e-15  Score=146.20  Aligned_cols=137  Identities=21%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             CCCcEEecCCCccc-ccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhc
Q 035852          680 TELETIDIGENEFS-GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF  758 (960)
Q Consensus       680 ~~L~~L~Ls~N~l~-g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~  758 (960)
                      ++|++|++++|+++ +.+|..+. .+++|++|++++|.+++.  ..+..+++|+.|++++|++++.+|..+.+++     
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence            34444444444444 34444332 345555555555554433  4455566666666666666655554433332     


Q ss_pred             cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccccc-Cchhhhhhcccceeec
Q 035852          759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE-IPAEITVLRELRSLNL  837 (960)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~L  837 (960)
                                                                      +|+.|+|++|++++. .+..++.+++|+.|++
T Consensus        96 ------------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           96 ------------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ------------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ------------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                            236667777776642 1256677777777777


Q ss_pred             CcccCcccCc---hhhccCCCCCEEECcCCcccccCCCC
Q 035852          838 SHNFFSGRIP---ENIGAMALLESLDFSSNRLEGEIPKN  873 (960)
Q Consensus       838 s~N~l~g~iP---~~l~~l~~L~~L~Ls~N~l~g~iP~~  873 (960)
                      ++|.+++..+   ..+..+++|+.||+++|.+. .+|..
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            7777775544   36777777777777777776 45543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.7e-15  Score=144.69  Aligned_cols=128  Identities=20%  Similarity=0.164  Sum_probs=91.4

Q ss_pred             Ccccceeeecccccc-ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcccc
Q 035852          704 FPRMIILILRSNKFH-GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNI  782 (960)
Q Consensus       704 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (960)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|++++.  ..++++                              
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l------------------------------   63 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL------------------------------   63 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC------------------------------
Confidence            456777777777776 66666667777777777777777643  223222                              


Q ss_pred             ccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCccc-CchhhccCCCCCEEEC
Q 035852          783 TEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR-IPENIGAMALLESLDF  861 (960)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L  861 (960)
                                             ++|+.|+|++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|+.|++
T Consensus        64 -----------------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           64 -----------------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             -----------------------TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             -----------------------CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                   2347788888888877777777788888888888888763 4477788888888888


Q ss_pred             cCCcccccCC---CCCCCCCCCCEEEcc
Q 035852          862 SSNRLEGEIP---KNTVNLVFLSHFNIS  886 (960)
Q Consensus       862 s~N~l~g~iP---~~l~~l~~L~~l~ls  886 (960)
                      ++|++++..|   ..+..+++|++||++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888876555   467777788888776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.6e-14  Score=142.74  Aligned_cols=86  Identities=29%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      |+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..+.++++|+.|++++
T Consensus        56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            36777888887776667788888888888888888877777788888888888888888865566678888888888888


Q ss_pred             Ccceec
Q 035852          888 NNLSGE  893 (960)
Q Consensus       888 N~l~g~  893 (960)
                      |++...
T Consensus       136 N~~~C~  141 (193)
T 2wfh_A          136 NPLYCD  141 (193)
T ss_dssp             SCEECS
T ss_pred             CCeecC
Confidence            887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=2.3e-14  Score=141.23  Aligned_cols=89  Identities=20%  Similarity=0.187  Sum_probs=68.1

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      |+.|++++|++++..|..++.+++|+.|+|++|++++..|..++.+++|+.|++++|++++..|..+.++++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            36777777777755555567788888888888888876666678888888888888888865555567788888888888


Q ss_pred             CcceecCCC
Q 035852          888 NNLSGEVPD  896 (960)
Q Consensus       888 N~l~g~iP~  896 (960)
                      |++.|..|.
T Consensus       134 N~~~~~~~~  142 (177)
T 2o6r_A          134 NPWDCSCPR  142 (177)
T ss_dssp             SCBCCCHHH
T ss_pred             CCeeccCcc
Confidence            888877663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1e-14  Score=139.35  Aligned_cols=127  Identities=19%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             CcccEEeccccccc-CCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          608 RLTQIINLEDNLLA-GEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       608 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      +.++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            55667777777776 56666667777777777777777654  5667777777777777777766666666677777777


Q ss_pred             cCCCccccc-CchHHhhcCcccceeeeccccccccCc---hhhcCCCCCCeEeec
Q 035852          687 IGENEFSGN-VPAWIGERFPRMIILILRSNKFHGVFP---LELCHLAFLKILVLA  737 (960)
Q Consensus       687 Ls~N~l~g~-ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls  737 (960)
                      +++|++++. .|..+. .+++|++|++++|++++..+   ..+..+++|+.||++
T Consensus        95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777777642 224444 57777777777777776555   456667777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.1e-14  Score=159.14  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=27.9

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN  665 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  665 (960)
                      |++|+.+++.+ .++..-+.+|.+|++|+.+++++|.+....+.+|..+.++..+.+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            45555555555 44444444455555555555555555444444454444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=3.9e-16  Score=157.12  Aligned_cols=147  Identities=22%  Similarity=0.275  Sum_probs=97.5

Q ss_pred             CCCCcEEecCCCcccccCch------HHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccccc
Q 035852          679 CTELETIDIGENEFSGNVPA------WIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNF  752 (960)
Q Consensus       679 l~~L~~L~Ls~N~l~g~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l  752 (960)
                      ...++.++++.+.++|.+|.      .+. .+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+.. 
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-   91 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-   91 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence            34444455555555554443      554 56777777777777765 55 6667777777777777776 44443322 


Q ss_pred             ccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhccc
Q 035852          753 TAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLREL  832 (960)
Q Consensus       753 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L  832 (960)
                                                                          +++|+.|+|++|++++ +| .++.+++|
T Consensus        92 ----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           92 ----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             ----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             ----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence                                                                2334778888888875 45 67788888


Q ss_pred             ceeecCcccCcccCc-hhhccCCCCCEEECcCCcccccCCCC----------CCCCCCCCEEE
Q 035852          833 RSLNLSHNFFSGRIP-ENIGAMALLESLDFSSNRLEGEIPKN----------TVNLVFLSHFN  884 (960)
Q Consensus       833 ~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~g~iP~~----------l~~l~~L~~l~  884 (960)
                      +.|+|++|++++..+ +.++.+++|+.|++++|++++.+|..          +..++.|+.||
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            888888888875322 46777888888888888888777764          66677777776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=3.1e-14  Score=142.13  Aligned_cols=129  Identities=24%  Similarity=0.290  Sum_probs=94.3

Q ss_pred             cEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCC
Q 035852          683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSD  762 (960)
Q Consensus       683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~  762 (960)
                      +++++++|+++ .+|..+   .++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            45666666665 555443   245666666666666 555667777788888888888876655555554443       


Q ss_pred             CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852          763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF  842 (960)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  842 (960)
                                                                    +.|+|++|+|++..|..|+.+++|+.|+|++|++
T Consensus        81 ----------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           81 ----------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             ----------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC
Confidence                                                          7888888888877777888888899999999999


Q ss_pred             cccCchhhccCCCCCEEECcCCccccc
Q 035852          843 SGRIPENIGAMALLESLDFSSNRLEGE  869 (960)
Q Consensus       843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~  869 (960)
                      ++..+..|..+++|+.|+|++|.+.+.
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          115 SVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CeeChhhhhcCccccEEEeCCCCeecC
Confidence            876666788899999999999988753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=3.3e-14  Score=140.12  Aligned_cols=133  Identities=21%  Similarity=0.198  Sum_probs=96.3

Q ss_pred             CcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852          682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS  761 (960)
Q Consensus       682 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~  761 (960)
                      .+.+++++|+++ .+|..+   .++|+.|++++|++++..+..+..+++|++|++++|++++..|..+..++.       
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------   77 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-------   77 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc-------
Confidence            356666666665 455433   356777777777777665666677788888888888887544444444333       


Q ss_pred             CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852          762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF  841 (960)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  841 (960)
                                                                    |+.|+|++|++++..|..++.+++|+.|+|++|+
T Consensus        78 ----------------------------------------------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           78 ----------------------------------------------LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             ----------------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----------------------------------------------cCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence                                                          4788888888887666677888889999999998


Q ss_pred             CcccCchhhccCCCCCEEECcCCcccccCC
Q 035852          842 FSGRIPENIGAMALLESLDFSSNRLEGEIP  871 (960)
Q Consensus       842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP  871 (960)
                      +++..+..+..+++|+.|+|++|++++..|
T Consensus       112 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          112 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            886655556888899999999998887665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.7e-14  Score=157.72  Aligned_cols=102  Identities=13%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc-EEecCCCcccccCchHHhhcCcccce
Q 035852          631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE-TIDIGENEFSGNVPAWIGERFPRMII  709 (960)
Q Consensus       631 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~~l~~L~~  709 (960)
                      +++|+.+++++|+++...+.+|.++++|+.++|.+| ++..-+.+|.+|++|+ .+++.+ .++ .|+...+.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            445555555555555443444555555555555555 4434444555555555 555555 443 344444445555555


Q ss_pred             eeeccccccccCchhhcCCCCCCeEe
Q 035852          710 LILRSNKFHGVFPLELCHLAFLKILV  735 (960)
Q Consensus       710 L~L~~N~l~~~~p~~l~~l~~L~~L~  735 (960)
                      +++++|+++..-+..|.++++|+.++
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            55555555555455555666665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=8e-16  Score=154.81  Aligned_cols=58  Identities=26%  Similarity=0.309  Sum_probs=34.4

Q ss_pred             ccEEEccCCcccccCc-hhhhhhcccceeecCcccCcccCchh----------hccCCCCCEEECcCCccc
Q 035852          808 LTNIDLSNNKFSGEIP-AEITVLRELRSLNLSHNFFSGRIPEN----------IGAMALLESLDFSSNRLE  867 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~----------l~~l~~L~~L~Ls~N~l~  867 (960)
                      |+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|..          +..+++|+.||  .|.++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            3556666666653211 35666666666666666666665543          66777777766  45544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=1.2e-13  Score=136.02  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=36.9

Q ss_pred             cEEEccCCcccccCchhhhhhcccceeecCcccCcccCch--hhccCCCCCEEECcCCcccccCCCC----CCCCCCCCE
Q 035852          809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPE--NIGAMALLESLDFSSNRLEGEIPKN----TVNLVFLSH  882 (960)
Q Consensus       809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~Ls~N~l~g~iP~~----l~~l~~L~~  882 (960)
                      +.|+|++|++++..|..++.+++|+.|+|++|+++ .+|.  .++.+++|+.|++++|+++ .+|..    +..++.|+.
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            44444444444322222344445555555555543 3333  4445555555555555554 33432    444555555


Q ss_pred             EEcccCcc
Q 035852          883 FNISYNNL  890 (960)
Q Consensus       883 l~ls~N~l  890 (960)
                      ||++.|..
T Consensus       145 Ld~~~n~~  152 (176)
T 1a9n_A          145 LDFQKVKL  152 (176)
T ss_dssp             ETTEECCH
T ss_pred             eCCCcCCH
Confidence            55555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.40  E-value=7.3e-12  Score=139.70  Aligned_cols=261  Identities=12%  Similarity=0.157  Sum_probs=144.5

Q ss_pred             CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852          214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD  293 (960)
Q Consensus       214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  293 (960)
                      ..++.+.+.. .++.+...+|.++ +|+.+++..+ ++ ..-...|.+ .+|+.+.+.. .+...-+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4445555443 3445555566654 5666666655 33 333344544 3566666664 44444455666677777777


Q ss_pred             CCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccC
Q 035852          294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS  373 (960)
Q Consensus       294 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  373 (960)
                      ++.|.++......|. +.+|+.+.+..+ ++ .++...|.++++|+.+++..+ ++..-..+|.. ++|           
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L-----------  250 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI-----------  250 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC-----------
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc-----------
Confidence            776666655444554 466777766543 33 455456666666666666653 33233334443 344           


Q ss_pred             CcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC-----CCCcccccCCCCCcEEecCCc
Q 035852          374 HQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS-----GQVPWSLGKLSSLRYLDISNN  448 (960)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n  448 (960)
                                         +.+.+. +.++..-...|.++++|+.+++.++.+.     ..-+..|.+|++|+.+++.+ 
T Consensus       251 -------------------~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          251 -------------------TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             -------------------SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             -------------------cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence                               334442 2233233445666777777777666543     23345566677777777763 


Q ss_pred             ccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCc-cCcEEeccC
Q 035852          449 QLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN-HLVNLDISD  520 (960)
Q Consensus       449 ~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~Ls~  520 (960)
                      .+. .++...|.++++|+.+.+..+ ++.+...+|..+ +|+.+.+.++......+..|.+++ .++.|.+..
T Consensus       310 ~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          310 SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            343 555666777777777777543 555555666666 666666666655444444444442 444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=5.2e-13  Score=131.33  Aligned_cols=131  Identities=11%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             CCCCcccEEecccccccCCCCCcccCCC-cccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852          605 NGTRLTQIINLEDNLLAGEIPDCWMNWR-YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE  683 (960)
Q Consensus       605 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  683 (960)
                      .++..++.|++++|+++. +|. +..+. +|++|++++|.+++.  ..++.+++|++|++++|++++..|..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            446778888888888874 454 44444 899999999988865  5788888999999999998865444458888999


Q ss_pred             EEecCCCcccccCch--HHhhcCcccceeeeccccccccCch----hhcCCCCCCeEeecCCcCc
Q 035852          684 TIDIGENEFSGNVPA--WIGERFPRMIILILRSNKFHGVFPL----ELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       684 ~L~Ls~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~  742 (960)
                      +|++++|+++ .+|.  .+. .+++|+.|++++|+++. +|.    .+..+++|+.||+++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999886 5775  554 68889999999998874 455    3788899999999888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=8.2e-13  Score=128.83  Aligned_cols=89  Identities=20%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      ++.|+|++|+|++..|..++.+++|+.|||++|++++..|..|+.+++|+.|+|++|++++..|..+.++++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            48899999999988899999999999999999999987777789999999999999999987777899999999999999


Q ss_pred             CcceecCCC
Q 035852          888 NNLSGEVPD  896 (960)
Q Consensus       888 N~l~g~iP~  896 (960)
                      |++.+..+.
T Consensus       112 N~~~c~c~~  120 (170)
T 3g39_A          112 NPWDCACSD  120 (170)
T ss_dssp             SCBCTTBGG
T ss_pred             CCCCCCchh
Confidence            999876553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=1.4e-11  Score=137.43  Aligned_cols=219  Identities=14%  Similarity=0.186  Sum_probs=110.6

Q ss_pred             CCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCC
Q 035852          138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLL  217 (960)
Q Consensus       138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  217 (960)
                      +|+.+++..+ +...-..+|.++ +|+.+.+.. .+..+...   .+.++++|+.++++.|.++.++.....   +.+|+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~---aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~  206 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED---IFYYCYNLKKADLSKTKITKLPASTFV---YAGIE  206 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSS---TTTTCTTCCEEECTTSCCSEECTTTTT---TCCCS
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHH---HhhCcccCCeeecCCCcceEechhhEe---ecccC
Confidence            4555555443 333333344443 455555543 22222111   244555555555555555544332221   35566


Q ss_pred             EEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCC
Q 035852          218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN  297 (960)
Q Consensus       218 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  297 (960)
                      .+.+.. .++.+...+|.++++|+.+++..+ ++ ..-...|.+ .+|+.+.+. +.++..-..+|.+|++|+.+++.++
T Consensus       207 ~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          207 EVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             EEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence            666653 255555556666666666666553 22 222334444 556666663 3344334455666666666666555


Q ss_pred             cCC-----CcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCccc
Q 035852          298 HFS-----YLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL  372 (960)
Q Consensus       298 ~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  372 (960)
                      .+.     ...+..|..|++|+.+++.+ .++ .++...|.+|++|+.+++..+ ++..-..+|.++ +|+.+++.+|.+
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            443     23345566666666666653 343 444455666666666666443 443444456666 666666666654


Q ss_pred             CC
Q 035852          373 SH  374 (960)
Q Consensus       373 ~~  374 (960)
                      ..
T Consensus       358 ~~  359 (401)
T 4fdw_A          358 PQ  359 (401)
T ss_dssp             CB
T ss_pred             cc
Confidence            43

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=2.6e-12  Score=125.71  Aligned_cols=88  Identities=22%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      |+.|+|++|+|++.+|..++++++|+.|+|++|+|++..|..|+.+++|+.|||++|++++..|..+.++++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            48899999999988899999999999999999999986666678999999999999999976666699999999999999


Q ss_pred             CcceecCC
Q 035852          888 NNLSGEVP  895 (960)
Q Consensus       888 N~l~g~iP  895 (960)
                      |++....+
T Consensus       115 N~~~c~~~  122 (174)
T 2r9u_A          115 NPWDCECR  122 (174)
T ss_dssp             SCBCTTBG
T ss_pred             CCcccccc
Confidence            99886433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=4.5e-12  Score=123.56  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             ccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeec
Q 035852          634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILR  713 (960)
Q Consensus       634 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~  713 (960)
                      .+.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...+..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence            455666666665 4555442  56677777777776666666777777777777777776 3444443367777777777


Q ss_pred             cccccccCchhhcCCCCCCeEeecCCcCccccC
Q 035852          714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP  746 (960)
Q Consensus       714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  746 (960)
                      +|++++..+..+..+++|+.|++++|++++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            777776666667777888888888888775443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.31  E-value=2.3e-11  Score=136.33  Aligned_cols=220  Identities=15%  Similarity=0.114  Sum_probs=109.8

Q ss_pred             hhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhc
Q 035852          306 WLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS  385 (960)
Q Consensus       306 ~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  385 (960)
                      +|.++++|+.+.+.++..  .++...|.++++|+.+++..+ ++......|.++..|+.+.+..+.......      . 
T Consensus       157 aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~------~-  226 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF------A-  226 (394)
T ss_dssp             TTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT------T-
T ss_pred             hhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh------h-
Confidence            344555555555543321  233344455555555555443 222223344455555444443322110000      0 


Q ss_pred             cCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCC
Q 035852          386 GCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL  465 (960)
Q Consensus       386 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L  465 (960)
                       .....|+.+.+.... +......+..+..++.+.+..+... .....+..+..++.+....+.    ++...|..+.+|
T Consensus       227 -~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L  299 (394)
T 4fs7_A          227 -LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSL  299 (394)
T ss_dssp             -TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTC
T ss_pred             -cccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccc
Confidence             001224555444321 2122234556667777776655332 334456666667766665542    344466677777


Q ss_pred             cEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccC
Q 035852          466 TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSN  545 (960)
Q Consensus       466 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~  545 (960)
                      +.+.+..+ ++.+...+|..+.+|+.+++... +...-..+|.+|.+|+.+++..+  ...++...|..|++|+.+++..
T Consensus       300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            77776543 55555666666666666666432 33334455666666666666554  3445555566666666666654


Q ss_pred             c
Q 035852          546 N  546 (960)
Q Consensus       546 n  546 (960)
                      +
T Consensus       376 ~  376 (394)
T 4fs7_A          376 R  376 (394)
T ss_dssp             G
T ss_pred             C
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.30  E-value=4e-11  Score=134.43  Aligned_cols=331  Identities=13%  Similarity=0.108  Sum_probs=168.2

Q ss_pred             CcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCccccccccc
Q 035852          279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSR  358 (960)
Q Consensus       279 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  358 (960)
                      -..+|.++++|+.+.+..+ ++.....+|.++++|+.+++.++ ++ .++...+.++++|+.+.+..+ +......+|..
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeec
Confidence            3445666667777766533 44444455666666666666543 32 344345555555555444332 11122222322


Q ss_pred             CCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCC
Q 035852          359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLS  438 (960)
Q Consensus       359 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  438 (960)
                      +..                               ..+.+.. .........|.++++|+.+.+.++. ...-...|.+++
T Consensus       139 ~~~-------------------------------~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~  185 (394)
T 4fs7_A          139 CDF-------------------------------KEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCG  185 (394)
T ss_dssp             CCC-------------------------------SEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT
T ss_pred             ccc-------------------------------cccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCC
Confidence            211                               1111111 1111122345566666666665442 223334455566


Q ss_pred             CCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEec
Q 035852          439 SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDI  518 (960)
Q Consensus       439 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~L  518 (960)
                      +|+.+++..+ +. .+....|.++..|+.+.+..+....                          .........|+.+.+
T Consensus       186 ~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i--------------------------~~~~~~~~~l~~i~i  237 (394)
T 4fs7_A          186 KLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYL--------------------------GDFALSKTGVKNIII  237 (394)
T ss_dssp             TCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEE--------------------------CTTTTTTCCCCEEEE
T ss_pred             CceEEEcCCC-ce-EeCchhhccccccceeecCCCceEe--------------------------ehhhcccCCCceEEE
Confidence            6666666554 22 3444455666666555554432211                          111122334444444


Q ss_pred             cCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccc
Q 035852          519 SDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILH  598 (960)
Q Consensus       519 s~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~  598 (960)
                      .+.-  ..+....+..+..++.+.+..+...-....+..+..++.+....+.+.                          
T Consensus       238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--------------------------  289 (394)
T 4fs7_A          238 PDSF--TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--------------------------  289 (394)
T ss_dssp             CTTC--CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--------------------------
T ss_pred             CCCc--eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--------------------------
Confidence            3221  223333344455555555554433211123444444444433322111                          


Q ss_pred             hhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcC
Q 035852          599 FVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGN  678 (960)
Q Consensus       599 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  678 (960)
                        ...+.++.+|+.+.+.++ +...-..+|.+|.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++..-..+|.+
T Consensus       290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence              112345667777776544 44444567888888888888754 55455667888888888888776 65555678888


Q ss_pred             CCCCcEEecCCCcccccCchHHhhcCccccee
Q 035852          679 CTELETIDIGENEFSGNVPAWIGERFPRMIIL  710 (960)
Q Consensus       679 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L  710 (960)
                      |++|+.+++..+ +. .+... +.++++|+.+
T Consensus       365 C~~L~~i~lp~~-~~-~~~~~-F~~c~~L~~I  393 (394)
T 4fs7_A          365 CINLKKVELPKR-LE-QYRYD-FEDTTKFKWI  393 (394)
T ss_dssp             CTTCCEEEEEGG-GG-GGGGG-BCTTCEEEEE
T ss_pred             CCCCCEEEECCC-CE-Ehhhe-ecCCCCCcEE
Confidence            888998888765 22 33333 3367777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=9.6e-12  Score=121.60  Aligned_cols=105  Identities=16%  Similarity=0.262  Sum_probs=69.9

Q ss_pred             cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852          635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS  714 (960)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~  714 (960)
                      +.+++++|+++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++ +|...+..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence            45666666664 5555543  566677777777766666666677777777777777763 5544433567777777777


Q ss_pred             ccccccCchhhcCCCCCCeEeecCCcCcc
Q 035852          715 NKFHGVFPLELCHLAFLKILVLAGNNLSG  743 (960)
Q Consensus       715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  743 (960)
                      |++++..+..+..+++|+.|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            77775555557777888888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=7.1e-13  Score=146.45  Aligned_cols=62  Identities=24%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             ccEEEccCCccccc----CchhhhhhcccceeecCcccCccc----CchhhccCCCCCEEECcCCccccc
Q 035852          808 LTNIDLSNNKFSGE----IPAEITVLRELRSLNLSHNFFSGR----IPENIGAMALLESLDFSSNRLEGE  869 (960)
Q Consensus       808 L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~g~  869 (960)
                      |++|||++|++++.    +++.+...+.|+.|||++|.+++.    +++.+...+.|+.|||++|.++..
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            45555555555432    234444555566666666666542    333344455666666666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=8.6e-11  Score=129.41  Aligned_cols=83  Identities=24%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             cEEEccC-CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          809 TNIDLSN-NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       809 ~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      +.|+|++ |+|++..|..|++|++|+.|||++|+|++..|..|+++++|+.|||++|+|++..|..+..+. |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            6667764 666666666666777777777777777766666667777777777777777654444444444 77777777


Q ss_pred             Cccee
Q 035852          888 NNLSG  892 (960)
Q Consensus       888 N~l~g  892 (960)
                      |++..
T Consensus       113 N~~~c  117 (347)
T 2ifg_A          113 NPLHC  117 (347)
T ss_dssp             SCCCC
T ss_pred             CCccC
Confidence            76653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.09  E-value=2.2e-11  Score=134.46  Aligned_cols=114  Identities=20%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             CCCCEEeccCcccCCCCcccccC-----CCCCCEEeCCCCcCCCcchhhh-cCCCCCCEEeeeCccccccccHHHH----
Q 035852          263 CNLVFLDLSDNNFQGPIPDTIQN-----WTSLRHLDLSSNHFSYLIPEWL-NKFSRLEYLSLSSNRLQGRISSVLL----  332 (960)
Q Consensus       263 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~i~~~~l----  332 (960)
                      +.|++|++++|.++......+..     .++|++|+|++|.++......+ ..+++|+.|+|++|.++.... ..+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHHH
Confidence            45667777777665432222221     2566666666666554322222 223456666666666543221 222    


Q ss_pred             -hcCCCCCEEeCCCCCCCcc----cccccccCCCCCEEEcCCcccCCcch
Q 035852          333 -ENLSSIQSLDLSFNELEWK----IPRSFSRFCNLRSISLSGIQLSHQKV  377 (960)
Q Consensus       333 -~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~  377 (960)
                       ...++|++|+|++|.++..    ++..+...++|++|+|++|.+++...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~  200 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL  200 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH
Confidence             1234555555555555421    22233444555555555554444333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.08  E-value=4.3e-09  Score=117.79  Aligned_cols=304  Identities=14%  Similarity=0.172  Sum_probs=132.0

Q ss_pred             CCEEecCCCcCCCCCcccccCCCCCcEEecCCcc---cccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEE
Q 035852          416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ---LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEEL  492 (960)
Q Consensus       416 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  492 (960)
                      |+.+.+-.+ ++..-..+|.++++|+.+.+..|.   ++ .+...+|.++.+|+.+.+..+ ++.+...+|..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            555555432 332333445555555555554442   22 344445555555555554432 344444455555555555


Q ss_pred             ecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCc
Q 035852          493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS  572 (960)
Q Consensus       493 ~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~  572 (960)
                      .+... +.......+..+..|+.+.+.++  ...+....|.. ..|+.+.+..+...-....+..+..++......+...
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccc
Confidence            55432 22222334555556666555443  22333333332 3455555544332222223444555555544433222


Q ss_pred             CCCCCCC----------------ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccE
Q 035852          573 GQLPLLA----------------SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLV  636 (960)
Q Consensus       573 ~~~p~~~----------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  636 (960)
                      .......                ..+..+.+..     .+...-...+.+|..|+.+.+.++... .-..+|.++++|+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-----~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~  292 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-----GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQD  292 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-----TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCE
T ss_pred             cccceeecccccccccccccccccccceEEcCC-----cceEcccceeeecccccEEecccccce-ecCccccccccccc
Confidence            1100000                0011111100     000111223445566666655443221 23345555666666


Q ss_pred             EECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccc
Q 035852          637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNK  716 (960)
Q Consensus       637 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~  716 (960)
                      +.+.. .++..-..+|.++.+|+.++|..+ ++..-..+|.+|++|+.+.+..+ ++ .|+...+.++++|+.+++.++.
T Consensus       293 i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          293 IEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             ccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            66642 333333445566666666666543 33333445666666666666443 33 4555555456666666665554


Q ss_pred             ccccCchhhcCCCCCCeEeecCC
Q 035852          717 FHGVFPLELCHLAFLKILVLAGN  739 (960)
Q Consensus       717 l~~~~p~~l~~l~~L~~L~Ls~N  739 (960)
                      ...   ..+....+|+.+.+..|
T Consensus       369 ~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          369 SQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             HHH---HTCBCCCCC--------
T ss_pred             eeh---hhhhccCCCCEEEeCCC
Confidence            321   23444555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=1.9e-10  Score=126.57  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=91.2

Q ss_pred             cEEEccCC-cccccCchhhhhhcccceeecCc-ccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcc
Q 035852          809 TNIDLSNN-KFSGEIPAEITVLRELRSLNLSH-NFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNIS  886 (960)
Q Consensus       809 ~~L~Ls~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls  886 (960)
                      ..++++++ +|+ .||. +..+++|+.|+|++ |+|++..|..|+.+++|+.|||++|+|+|.+|..+++|++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            46799998 898 6998 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             cCcceecCCCCcccCCCCccccCCCCCccCc
Q 035852          887 YNNLSGEVPDEAQFATFDSSSYIGDEYLCGP  917 (960)
Q Consensus       887 ~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~  917 (960)
                      +|+|++..|.......+....+.+|+.-|..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            9999964443333223555567788877754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.05  E-value=4.6e-09  Score=117.60  Aligned_cols=129  Identities=16%  Similarity=0.220  Sum_probs=61.7

Q ss_pred             cccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCcc
Q 035852          433 SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNH  512 (960)
Q Consensus       433 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  512 (960)
                      .|..++.|+.+.+..+..  .+....|.++++|+.+.+. +.++.+...+|..+.+|+.+.+..+ +...-..+|.+|.+
T Consensus       260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            344444555555443322  2333445555555555553 2344444445555555555555432 33333445666666


Q ss_pred             CcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccC
Q 035852          513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSAN  569 (960)
Q Consensus       513 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n  569 (960)
                      |+.+.+..+  ...+....|..|++|+.+++.++....  ..+..+..|+.+.+..+
T Consensus       336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence            666666543  345666666777777777776654321  13444455555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=6.1e-09  Score=113.80  Aligned_cols=59  Identities=22%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             cCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHh-hcCcccceeeec
Q 035852          652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIG-ERFPRMIILILR  713 (960)
Q Consensus       652 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~l~~L~~L~L~  713 (960)
                      +..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+....-..+. ..+|+|+.|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            345566666666665211 1222 22 55666666666555432222222 134555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=2.1e-08  Score=109.60  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             CCCcEEeCCCCCCC-CC------hhHHhhcCCCCCCEEeccCcccC---------CCCcccccCCCCCCEEeCCCCcCCC
Q 035852          238 SSLVTLDLSHNQFD-NS------LIATQLYGLCNLVFLDLSDNNFQ---------GPIPDTIQNWTSLRHLDLSSNHFSY  301 (960)
Q Consensus       238 ~~L~~L~Ls~n~l~-~~------~~~~~l~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~  301 (960)
                      ..++.|.+....+. +.      .+..++..+++|+.|.+......         +.+...+..+++|+.|+|++|.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            34666766654443 01      12233445677888877654321         1233444556666666666552111


Q ss_pred             cchhhhcCCCCCCEEeeeCccccccccHHHHh--cCCCCCEEeCC
Q 035852          302 LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE--NLSSIQSLDLS  344 (960)
Q Consensus       302 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~Ls  344 (960)
                       ++. + .+++|+.|++..+.+..... ..+.  .+++|++|+|+
T Consensus       187 -l~~-~-~~~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          187 -IGK-K-PRPNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             -CCS-C-BCTTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEE
T ss_pred             -ecc-c-cCCCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEe
Confidence             122 2 25566666666655543221 2222  45666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.57  E-value=1.4e-06  Score=96.80  Aligned_cols=128  Identities=9%  Similarity=0.088  Sum_probs=67.5

Q ss_pred             CCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852          606 GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI  685 (960)
Q Consensus       606 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (960)
                      .+..++.+.+..+ +......++.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +...-...|.+|++|+.+
T Consensus       215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            3445555554433 22223345555666666666554 33333445566666666666443 332334456666666666


Q ss_pred             ecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecC
Q 035852          686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAG  738 (960)
Q Consensus       686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  738 (960)
                      ++.++.++ .|+...+.++++|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus       292 ~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          292 VMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            66666555 455544445666666666543 3333344566666666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.49  E-value=7e-06  Score=91.06  Aligned_cols=145  Identities=14%  Similarity=0.192  Sum_probs=107.6

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      +..+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++..-...|.++.+|+.+.
T Consensus       193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            3444444443322 2234456777889999999766 44355667889999999999876 5545667899999999999


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccC-ccccccccchhc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP-TCISNFTAMATF  758 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~l~~~  758 (960)
                      +..+ +. .++...+..+++|+.+.+.++.++..-...|.++.+|+.+++..+ ++ .|+ .+|.++++|+.+
T Consensus       270 l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          270 FYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTI  338 (379)
T ss_dssp             ECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCC
T ss_pred             cccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEE
Confidence            9765 44 577777778999999999999888777788999999999999765 44 444 477788877544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=2.5e-07  Score=95.52  Aligned_cols=65  Identities=25%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             hccccEEEccCCcccc--cCchhhhhhcccceeecCcccCcccCchhhccCC--CCCEEECcCCcccccCC
Q 035852          805 LRLLTNIDLSNNKFSG--EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA--LLESLDFSSNRLEGEIP  871 (960)
Q Consensus       805 ~~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~Ls~N~l~g~iP  871 (960)
                      ++.|+.|+||+|+|++  .+|..++.+++|+.||||+|++++.  +.+..+.  +|+.|+|++|.+++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            4555666666666655  4445555566666666666666543  2333333  55555555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.3e-07  Score=97.63  Aligned_cols=51  Identities=25%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             ccEEEccCCcccccCchhhhhhc--ccceeecCcccCcccCch-------hhccCCCCCEEE
Q 035852          808 LTNIDLSNNKFSGEIPAEITVLR--ELRSLNLSHNFFSGRIPE-------NIGAMALLESLD  860 (960)
Q Consensus       808 L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~~l~~L~~L~  860 (960)
                      |+.|||++|+|++.  .++..++  .|+.|+|++|.+++.+|+       .+..+++|+.||
T Consensus       198 L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          198 LKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            45666666666643  3344444  667777777777665552       356677777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=6.8e-07  Score=87.87  Aligned_cols=17  Identities=12%  Similarity=-0.025  Sum_probs=8.5

Q ss_pred             ccCCCCCEEEcCCcccC
Q 035852          357 SRFCNLRSISLSGIQLS  373 (960)
Q Consensus       357 ~~l~~L~~L~L~~n~l~  373 (960)
                      ...++|++|++++|.+.
T Consensus       148 ~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEeccCCCCC
Confidence            33445555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.19  E-value=1.5e-06  Score=85.48  Aligned_cols=90  Identities=16%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             CCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCc----hhhhhcCCCCCCEEec--CCCcCCCC---
Q 035852          359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGS----LTNQIGKFKVLNSVDL--SENSISGQ---  429 (960)
Q Consensus       359 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~---  429 (960)
                      .++|++|+|++|.+.+.....+...+..  .+.|++|+|++|.++..    +...+...+.|++|++  ++|.+...   
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKV--NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHH--CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHh--CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3444444444444444333333333221  12244444444444432    2333444455666666  55555533   


Q ss_pred             -CcccccCCCCCcEEecCCccc
Q 035852          430 -VPWSLGKLSSLRYLDISNNQL  450 (960)
Q Consensus       430 -~p~~l~~l~~L~~L~L~~n~l  450 (960)
                       +...+...++|++|++++|.+
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeccCCCC
Confidence             222333445566666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=2.5e-05  Score=74.48  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=42.2

Q ss_pred             CCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcc-cCCCCcccccCC----CCCCEEeCCCCc-CCCcchhhhcCCCC
Q 035852          239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN-FQGPIPDTIQNW----TSLRHLDLSSNH-FSYLIPEWLNKFSR  312 (960)
Q Consensus       239 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~  312 (960)
                      .|++||++++.++ ..-...+.++++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+.++++
T Consensus        62 ~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4666666666665 3333444566666666666663 443222233332    245555555553 44433334455555


Q ss_pred             CCEEeeeCcc
Q 035852          313 LEYLSLSSNR  322 (960)
Q Consensus       313 L~~L~L~~n~  322 (960)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            5555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.57  E-value=5.3e-05  Score=72.28  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             CCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCcc-ccccccHHHHhcC----CCCCEEeCCCCC-CCcccccccccCCC
Q 035852          288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR-LQGRISSVLLENL----SSIQSLDLSFNE-LEWKIPRSFSRFCN  361 (960)
Q Consensus       288 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~  361 (960)
                      .|++||+++|.++..--..+..+++|++|+|++|. +++.-- ..+..+    ++|++|+|++|. ++..--..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45555555555544433444555566666666653 332111 233332    356666666653 44433344555666


Q ss_pred             CCEEEcCCc
Q 035852          362 LRSISLSGI  370 (960)
Q Consensus       362 L~~L~L~~n  370 (960)
                      |++|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.81  E-value=0.002  Score=62.60  Aligned_cols=83  Identities=11%  Similarity=0.135  Sum_probs=37.1

Q ss_pred             CCCcEEeCCCC-CCCCC---hhHHhhcCCCCCCEEeccCcccCCC----CcccccCCCCCCEEeCCCCcCCCcc----hh
Q 035852          238 SSLVTLDLSHN-QFDNS---LIATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFSYLI----PE  305 (960)
Q Consensus       238 ~~L~~L~Ls~n-~l~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~----p~  305 (960)
                      +.|++|+|++| .+.+.   .+.+.+..-+.|++|+|++|++...    +.+.+..-+.|++|+|++|.|...-    .+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            44555555543 44311   1233444445555555555555422    2233334455555555555554321    12


Q ss_pred             hhcCCCCCCEEeeeC
Q 035852          306 WLNKFSRLEYLSLSS  320 (960)
Q Consensus       306 ~l~~l~~L~~L~L~~  320 (960)
                      .+..-+.|++|+|++
T Consensus       121 aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          121 STLVTQSIVEFKADN  135 (197)
T ss_dssp             HTTTTCCCSEEECCC
T ss_pred             HHhhCCceeEEECCC
Confidence            233334455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.73  E-value=0.0018  Score=62.99  Aligned_cols=89  Identities=13%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCch----hhhhcCCCCCCEEecCCC---cCCCC--
Q 035852          359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL----TNQIGKFKVLNSVDLSEN---SISGQ--  429 (960)
Q Consensus       359 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n---~l~~~--  429 (960)
                      -+.|+.|+|++|.+.+.....+...+...  ..|++|+|+.|.++...    ...+..-+.|++|+|++|   .+...  
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N--~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcC--CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            34444444444444444444444433321  22455555555544321    222333344555555543   22211  


Q ss_pred             --CcccccCCCCCcEEecCCcc
Q 035852          430 --VPWSLGKLSSLRYLDISNNQ  449 (960)
Q Consensus       430 --~p~~l~~l~~L~~L~L~~n~  449 (960)
                        +...+..-+.|+.|+++.|.
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCCcCeEeccCCC
Confidence              22334444556666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.07  E-value=0.0062  Score=55.18  Aligned_cols=57  Identities=18%  Similarity=0.290  Sum_probs=35.5

Q ss_pred             cEEEccCCccc-ccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852          809 TNIDLSNNKFS-GEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE  867 (960)
Q Consensus       809 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~  867 (960)
                      ..+|.++++|+ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777777776 35554322  24667777777776544445566667777777766654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.40  E-value=0.025  Score=51.17  Aligned_cols=56  Identities=27%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             EEECCCCccc-cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc
Q 035852          636 VLRLDNNKFT-GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS  693 (960)
Q Consensus       636 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (960)
                      .++.+++.++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4444555443 23443321  34555555555555433444555555666666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	960
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 94.0 bits (232), Expect = 2e-21
 Identities = 66/314 (21%), Positives = 117/314 (37%), Gaps = 34/314 (10%)

Query: 31  CVESEREALLSFKQDLEDPSNRLATWIGDGDCC--KWAGVICDN--FTGHVLELHLGNPW 86
           C   +++ALL  K+DL +P+  L++W+   DCC   W GV+CD    T  V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 87  EDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSG 146
                     +      I  +L +  +L +L +   +     IP  +  +  L +L ++ 
Sbjct: 60  ---------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 147 AGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG---WLYDLSLLENLDLSGVDLSKV 203
               G IP+ +  +  L  L+   N L G     +     L  ++   N     +  S  
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 204 SNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC 263
           S   L T+   S   L            L+  + S  +    +   F +     +++   
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 264 --------------NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNK 309
                         NL  LDL +N   G +P  +     L  L++S N+    IP+  N 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN- 289

Query: 310 FSRLEYLSLSSNRL 323
             R +  + ++N+ 
Sbjct: 290 LQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 62/259 (23%), Positives = 94/259 (36%), Gaps = 12/259 (4%)

Query: 219 LQLAGCQLSHFPPL--SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
           L L+G  L    P+  S+AN   L  L +         I   +  L  L +L ++  N  
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
           G IPD +    +L  LD S N  S  +P  ++    L  ++   NR+ G I         
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
              S+ +S N L  KIP +F+              +   +            SD      
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNL--------AFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 397 LSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSE 456
                       ++G  K LN +DL  N I G +P  L +L  L  L++S N L G + +
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 457 IHFANLSSLTFFYASRNSL 475
               NL        + N  
Sbjct: 287 --GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 8e-15
 Identities = 60/284 (21%), Positives = 91/284 (32%), Gaps = 7/284 (2%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRN-S 474
            + D    +  G +  +  +   +  LD+S   L          ANL  L F Y     +
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
           L     P    + QL  L +    +    P +L     LV LD S + +  T+P     S
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-S 147

Query: 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL-S 593
           +     ++   N+I G IP+         L  S      +L                  S
Sbjct: 148 LPNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 594 GSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLG 653
            ++L        G+                        + L  L L NN+  G LP  L 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 654 ALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVP 697
            L  L SL++  NNL G +P   GN    +      N+     P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 59/275 (21%), Positives = 98/275 (35%), Gaps = 11/275 (4%)

Query: 600 VCHETNGTRLTQIINLEDNLLAG--EIPDCWMNWRYLLVLRLDNN-KFTGKLPTSLGALS 656
           +C     T     ++L    L     IP    N  YL  L +       G +P ++  L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 657 LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNK 716
            L  L++ + N+SG +P  L     L T+D   N  SG +P  I    P ++ +    N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNR 160

Query: 717 FHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFP 776
             G  P      + L   +    N              +A    S ++        F   
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 777 GKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLN 836
                I                     + + L  +DL NN+  G +P  +T L+ L SLN
Sbjct: 221 KNTQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 837 LSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP 871
           +S N   G IP+  G +   +   +++N+     P
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 58/269 (21%), Positives = 89/269 (33%), Gaps = 9/269 (3%)

Query: 658 LRSLHLRNNNLSG--TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSN 715
           + +L L   NL     +P SL N   L  + IG              +  ++  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 716 KFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSF 775
              G  P  L  +  L  L  + N LSGT+P  IS+   +       +  +   P  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSL 835
             K F                          L       +        + +    +    
Sbjct: 172 FSKLFTSMTISRNRLTGK------IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 836 NLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
                         +G    L  LD  +NR+ G +P+    L FL   N+S+NNL GE+P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 896 DEAQFATFDSSSYIGDEYLCGPVLKKLCT 924
                  FD S+Y  ++ LCG  L   CT
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.5 bits (176), Expect = 3e-14
 Identities = 59/275 (21%), Positives = 104/275 (37%), Gaps = 7/275 (2%)

Query: 408 NQIGKFKVLNSVDLSENSISG--QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL 465
           +   +   +N++DLS  ++     +P SL  L  L +L I              A L+ L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 466 TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVD 525
            + Y +  +++         +  L  LD     L    P  + S  +LV +    + I  
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 526 TIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVL 585
            IP+ +      F  +++S N++ G+IP       L  +DLS N L G   +L  +    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645
                    + L F   +   ++    ++L +N + G +P      ++L  L +  N   
Sbjct: 224 QKIHLA--KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCT 680
           G++P   G L         NN      P  L  CT
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 53/311 (17%), Positives = 95/311 (30%), Gaps = 35/311 (11%)

Query: 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFS--YLIPEWLNKFSRLEYLSLSSNRLQGR 326
           D  +  + G + DT      + +LDLS  +    Y IP  L     L +L +        
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 327 ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG 386
                +  L+ +  L ++   +   IP   S+   L ++  S   LS             
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL---------- 141

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDIS 446
                                  I     L  +    N ISG +P S G  S L      
Sbjct: 142 --------------------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 447 NNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
           +   N    +I     +    F     ++            +  +    +          
Sbjct: 182 SR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDL 566
           +    +L  LD+ ++ I  T+P    + +   + L++S N + GEIP    + +      
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 567 SANNLSGQLPL 577
           + N      PL
Sbjct: 299 ANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 143 DLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVE--DLGWLYDLSLLENLDLSGVDL 200
           DL      G +P  +  L  L  LN+  N L G   +  +L      +   N  L G  L
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 201 SKVS 204
              +
Sbjct: 310 PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ--G 277
            L   ++    P  +     L +L++S N     +   Q   L        ++N      
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNKCLCGS 307

Query: 278 PIP 280
           P+P
Sbjct: 308 PLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 62/371 (16%), Positives = 118/371 (31%), Gaps = 36/371 (9%)

Query: 110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLR 169
           D + +  L       K I     +  + NL  ++ S      + P  + NL+ L  + + 
Sbjct: 42  DLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

Query: 170 PNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL-------QLA 222
            N +  +             L N  ++ +D  K            + +            
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDT 282
                      +   ++L TL+      +     + L  L NL  L  ++N      P  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL- 215

Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
               T+L  L L+ N         L   + L  L L++N++        L  L+ +  L 
Sbjct: 216 -GILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELK 269

Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
           L  N++    P             L+ +       +Q+  I        L  L L    +
Sbjct: 270 LGANQISNISP----------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 403 SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL 462
           S      +     L  +  + N +S     SL  L+++ +L   +NQ++        ANL
Sbjct: 320 SDIS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD---LTPLANL 372

Query: 463 SSLTFFYASRN 473
           + +T    +  
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 65/370 (17%), Positives = 137/370 (37%), Gaps = 29/370 (7%)

Query: 235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDL 294
              +  +   L      +++  T L     +  L       +    D ++   +L  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGIKSI--DGVEYLNNLTQINF 73

Query: 295 SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR 354
           S+N  + + P  L   ++L  + +++N++        L NL+ +   +    +++     
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 355 SFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTN------ 408
           +      L S ++S I       S     F   V+D+    +L+        +N      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 409 QIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFF 468
            + K   L S+  + N IS   P  +   ++L  L ++ NQL    +    A+L++LT  
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT---LASLTNLTDL 246

Query: 469 YASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIP 528
             + N ++         + +L EL L +  +    P        L  L   +        
Sbjct: 247 DLANNQIS--NLAPLSGLTKLTELKLGANQISNISPLA-----GLTALTNLELNENQLED 299

Query: 529 NRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA--SNVMVLD 586
                ++    YL+L  N I    P ++ +++L  L  + N +S  +  LA  +N+  L 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLS 357

Query: 587 LSKNKLSGSI 596
              N++S   
Sbjct: 358 AGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 1e-15
 Identities = 59/386 (15%), Positives = 123/386 (31%), Gaps = 36/386 (9%)

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
            +   +  + + DT+       +T    L      I   I  +  ++ L  ++ S N L+
Sbjct: 24  KMKTVLGKTNVTDTVSQTDLDQVT---TLQADRLGIK-SIDGVEYLNNLTQINFSNNQLT 79

Query: 573 GQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW 631
              PL   + ++ + ++ N+++            G  L      + + L        +  
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN---------NNLSGTLPVSLGNCTEL 682
               +  +        L        +     L N         ++   +    L   T L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
           E++    N+ S   P  I      +  L L  N+        L  L  L  L LA N +S
Sbjct: 200 ESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 743 GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFK 802
              P             G   +  ++  ++                 EL   + + ++  
Sbjct: 255 NLAP-----------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFS 862
           + L+ LT + L  N  S   P  ++ L +L+ L  ++N  S     ++  +  +  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYN 888
            N++    P    NL  ++   ++  
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 3e-15
 Identities = 72/373 (19%), Positives = 119/373 (31%), Gaps = 68/373 (18%)

Query: 395 LDLSNTTLSGSLT-NQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
             L  T ++ +++   + +   L +  L   SI G     +  L++L  ++ SNNQL   
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNH- 512
                  NL+ L     + N +        +       L         P  +  +     
Sbjct: 82  ---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 513 -----------------------------------LVNLDISDSGIVDTIPNRFWKSITQ 537
                                              L  L+  D              +T 
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 538 FNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVLDLSKNKLSGSI 596
              L  +NNQI    P    ++ L  L L+ N L     L + +N+  LDL+ N++S   
Sbjct: 199 LESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 257

Query: 597 --------------LHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNN 642
                          + + + +    LT + NLE N    E      N + L  L L  N
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 643 KFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGE 702
             +   P  + +L+ L+ L   NN +S     SL N T +  +  G N+ S   P     
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL---A 370

Query: 703 RFPRMIILILRSN 715
              R+  L L   
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 79/421 (18%), Positives = 140/421 (33%), Gaps = 65/421 (15%)

Query: 171 NYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFP 230
             LG   V D     DL  +  L    + +  +         L +L  +  +  QL+   
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDIT 82

Query: 231 PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLR 290
           PL   N + LV + +++NQ  +      L  L  L   +    +       T  N   L 
Sbjct: 83  PLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 291 HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW 350
              +S       +                            L NL++++ LD+S N  + 
Sbjct: 141 SNTISDISALSGLTSLQQLSFG-----------NQVTDLKPLANLTTLERLDISSN--KV 187

Query: 351 KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQI 410
                 ++  NL S+  +  Q+S         I    +   L+ L L+   L       +
Sbjct: 188 SDISVLAKLTNLESLIATNNQISD--------ITPLGILTNLDELSLNGNQLKD--IGTL 237

Query: 411 GKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYA 470
                L  +DL+ N IS   P  L  L+ L  L +  NQ++        A L++LT    
Sbjct: 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI---SPLAGLTALTNLEL 292

Query: 471 SRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNR 530
           + N                               S + +  +L  L +  + I D  P  
Sbjct: 293 NENQ--------------------------LEDISPISNLKNLTYLTLYFNNISDISP-- 324

Query: 531 FWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA-SNVMVLDLSK 589
              S+T+   L  +NN++   + +L  ++ +  L    N +S   PL   + +  L L+ 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 382

Query: 590 N 590
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 40/277 (14%), Positives = 83/277 (29%), Gaps = 27/277 (9%)

Query: 630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE 689
                +   L     T  +  +   L  + +L      +  ++   +     L  I+   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 75

Query: 690 NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCI 749
           N+ +   P         +  L+      + +  +           +   NN    I    
Sbjct: 76  NQLTDITP------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 750 SNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAV----- 804
           +        L S++I  I   S  +   +     +    + L  L        +      
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 805 ------LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLES 858
                 L  L ++  +NN+ S   P  I     L  L+L+ N         + ++  L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 859 LDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
           LD ++N++    P +   L  L+   +  N +S   P
Sbjct: 246 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 280

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.1 bits (222), Expect = 3e-20
 Identities = 57/280 (20%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY 172
               L+L  N    I       ++ NL  L L       + P     L  L+ L L  N 
Sbjct: 32  DTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 173 LGGLYVEDLGWLYDLSLLEN------------------LDLSGVDLSKVSNGPLVTNALR 214
           L  L  +    L +L + EN                  ++L    L            ++
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
            L  +++A   ++  P        SL  L L  N+    + A  L GL NL  L LS N+
Sbjct: 151 KLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNS 206

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSV---- 330
                  ++ N   LR L L++N    +     +    ++ + L +N +    S+     
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 331 -LLENLSSIQSLDLSFNELE-WKI-PRSFSRFCNLRSISL 367
                 +S   + L  N ++ W+I P +F       ++ L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 48/263 (18%), Positives = 84/263 (31%), Gaps = 15/263 (5%)

Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
                LDL +N+    +       L NL  L L +N      P        L  L LS N
Sbjct: 31  PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS 357
               L  +       L        +++  + + L  N   +  L  +  +       +F 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQ 147

Query: 358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLN 417
               L  I ++   ++              +   L  L L    ++      +     L 
Sbjct: 148 GMKKLSYIRIADTNITT---------IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 418 SVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT- 476
            + LS NSIS     SL     LR L ++NN+L         A+   +   Y   N+++ 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISA 256

Query: 477 LKANPNWVPVFQLEELDLRSCYL 499
           + +N    P +  ++       L
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSL 279

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 5e-15
 Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 24/292 (8%)

Query: 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
            LR +  S       +P+ L        L L +N++   I     +NL ++ +L L  N+
Sbjct: 11  HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 66

Query: 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
           +    P +F+    L  + LS  QL        L          L   +   T +  S+ 
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKE------LPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 408 NQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTF 467
           N + +  V+  +  +    SG    +   +  L Y+ I++  +    + I      SLT 
Sbjct: 121 NGLNQMIVVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI----TTIPQGLPPSLTE 175

Query: 468 FYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTI 527
            +   N +T     +   +  L +L L    +       L +  HL  L ++++ +V   
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

Query: 528 PNRFWKSITQFNYLSLSNNQIHGEIPN-------LTEVSQLGTLDLSANNLS 572
                        + L NN I     N        T+ +    + L +N + 
Sbjct: 236 GG--LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 7e-14
 Identities = 53/287 (18%), Positives = 94/287 (32%), Gaps = 37/287 (12%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           +   LDL +N          +N  +L  L L +N  S + P       +LE L LS N+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
                 +  +   ++Q L +  NE+       F+    +  + L    L           
Sbjct: 92  ----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL----------- 136

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
                              SG         K L+ + +++ +I+       G   SL  L
Sbjct: 137 -----------------KSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTEL 176

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPF 503
            +  N++    +      L++L     S NS++   N +      L EL L +  L    
Sbjct: 177 HLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKV 234

Query: 504 PSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG 550
           P  L    ++  + + ++ I     N F          S S   +  
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 50/291 (17%), Positives = 95/291 (32%), Gaps = 36/291 (12%)

Query: 161 SNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQ 220
            +   L+L+ N +  +   D     +L  L  L L    +SK+S G      L  L  L 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILINNKISKISPGAF--APLVKLERLY 85

Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
           L+  QL   P         L   +    +   S+          +V L  +     G   
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIEN 143

Query: 281 DTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340
              Q    L ++ ++  + + +          L  L L  N++    ++  L+ L+++  
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAA-SLKGLNNLAK 199

Query: 341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNT 400
           L LSFN +      S +   +LR + L+  +L                   ++ + L N 
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-------PGGLADHKYIQVVYLHNN 252

Query: 401 TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
            +S                 +  N      P    K +S   + + +N + 
Sbjct: 253 NISA----------------IGSNDFCP--PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 16/281 (5%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
           L  V  S+  +  +VP  L        LD+ NN++   + +  F NL +L       N +
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI 67

Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI 535
           +  +   + P+ +LE L L    L         +   L   +   + +  ++ N     +
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQM 126

Query: 536 TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGS 595
                 +        E      + +L  + ++  N++     L  ++  L L  NK++  
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

Query: 596 ILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL 655
               +    N  +L     L  N ++        N  +L  L L+NNK     P  L   
Sbjct: 187 DAASLKGLNNLAKL----GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 241

Query: 656 SLLRSLHLRNNNLSG------TLPVSLGNCTELETIDIGEN 690
             ++ ++L NNN+S         P           + +  N
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 2e-11
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 11/235 (4%)

Query: 658 LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKF 717
              L L+NN ++        N   L T+ +  N+ S   P        ++  L L  N+ 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQL 91

Query: 718 HGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPG 777
             +       L  L++       +  ++   ++    +        + T    S     G
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-------ELGTNPLKSSGIENG 144

Query: 778 KFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNL 837
            F  + +  +    I     T   + +   LT + L  NK +    A +  L  L  L L
Sbjct: 145 AFQGMKK--LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 838 SHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892
           S N  S     ++     L  L  ++N+L  ++P    +  ++    +  NN+S 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 9/233 (3%)

Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANN 570
               LD+ ++ I +     F K++   + L L NN+I    P     + +L  L LS N 
Sbjct: 32  DTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 571 LSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMN 630
           L      +   +  L + +N+++               +   +       +G     +  
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGIENGAFQG 148

Query: 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690
            + L  +R+ +   T  +P  L     L  LHL  N ++     SL     L  + +  N
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG 743
             S      +        + +  +N      P  L    +++++ L  NN+S 
Sbjct: 206 SISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 18/278 (6%)

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
           T +++L++N +       + N + L  L L NNK +   P +   L  L  L+L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA 729
                      EL   +    +   +V   +      ++ L     K  G+       + 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789
            L  + +A  N++ TIP       ++       +  T    +          +   F   
Sbjct: 151 KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG----- 844
                        A    L  + L+NNK   ++P  +   + ++ + L +N  S      
Sbjct: 208 -----SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 845 -RIPENIGAMALLESLDFSSNRLE-GEIPKNTVNLVFL 880
              P      A    +   SN ++  EI  +T   V++
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 40/287 (13%), Positives = 76/287 (26%), Gaps = 21/287 (7%)

Query: 560 QLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNL 619
            L  +  S   L      L  +  +LDL  NK++        +  N   L     L +N 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL----ILINNK 66

Query: 620 LAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNC 679
           ++   P  +     L  L L  N+           L  LR        +  ++   L   
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 680 TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN 739
             +E              A+ G    ++  + +       +          L  L L GN
Sbjct: 127 IVVELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGN 181

Query: 740 NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTL 799
            ++      +     +A    S +  +       +       +     +   +       
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 800 TFKAVLRLLTNIDLSNNKFSG------EIPAEITVLRELRSLNLSHN 840
            +      +  + L NN  S         P   T       ++L  N
Sbjct: 242 KY------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 33/89 (37%)

Query: 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867
              +DL NNK +     +   L+ L +L L +N  S   P     +  LE L  S N+L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 868 GEIPKNTVNLVFLSHFNISYNNLSGEVPD 896
               K    L  L         +   V +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867
           L  +  S+     ++P ++    +   L+L +N  +     +   +  L +L   +N++ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 868 GEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLC 923
              P     LV L    +S N L        +              +   V   L 
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 7e-15
 Identities = 54/259 (20%), Positives = 86/259 (33%), Gaps = 10/259 (3%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY 172
               + L  N    +       +  NL  L L       +       L+ L+ L+L  N 
Sbjct: 33  ASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 173 LGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPL 232
                       + L  L  L L    L ++  G        +L  L L    L   P  
Sbjct: 92  QLRSVDPA--TFHGLGRLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPDD 147

Query: 233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292
           +  +  +L  L L  N+  +S+      GL +L  L L  N      P   ++   L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI 352
            L +N+ S L  E L     L+YL L+ N              + +Q    S +E+   +
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 353 PRSFS--RFCNLRSISLSG 369
           P+  +      L +  L G
Sbjct: 265 PQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 51/329 (15%), Positives = 89/329 (27%), Gaps = 59/329 (17%)

Query: 266 VFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
           V         Q  +P  I    + + + L  N  S++          L  L L SN L  
Sbjct: 14  VTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS 385
             ++         Q       +L    P +F     L +                     
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT--------------------- 109

Query: 386 GCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDI 445
                    L L    L             L  + L +N++      +   L +L +L +
Sbjct: 110 ---------LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 446 SNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPS 505
             N+++       F  L SL      +N                     R  ++ P    
Sbjct: 161 HGNRISSVPERA-FRGLHSLDRLLLHQN---------------------RVAHVHPHAFR 198

Query: 506 WLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLD 565
            L     L     + S     +P      +    YL L++N    +       + L    
Sbjct: 199 DLGRLMTLYLFANNLS----ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254

Query: 566 LSANNLSGQLPLLASNVMVLDLSKNKLSG 594
            S++ +   LP   +   +  L+ N L G
Sbjct: 255 GSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 4e-11
 Identities = 49/263 (18%), Positives = 82/263 (31%), Gaps = 35/263 (13%)

Query: 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN--------------------- 252
            +   + L G ++SH P  S     +L  L L  N                         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 253 ---SLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNK 309
              S+     +GL  L  L L     Q   P   +   +L++L L  N    L  +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 310 FSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
              L +L L  NR+           L S+  L L  N +    P +F     L ++ L  
Sbjct: 152 LGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 370 IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ 429
             LS      +  + +      L+ L L++             +  L     S + +   
Sbjct: 211 NNLSALPTEALAPLRA------LQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCS 263

Query: 430 VPWSLGKLSSLRYLDISNNQLNG 452
           +P    +L+      ++ N L G
Sbjct: 264 LP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 6e-10
 Identities = 43/306 (14%), Positives = 83/306 (27%), Gaps = 37/306 (12%)

Query: 563 TLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG 622
           T       L      + +    + L  N++S           N   LT +    + L   
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRN---LTILWLHSNVLARI 71

Query: 623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTEL 682
           +            +   DN +     P +   L  L +LHL    L    P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742
           + + + +N                +  L L  N+   V       L  L  L+L  N ++
Sbjct: 132 QYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 743 GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFK 802
              P    +   + T     +  +       +                            
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA------------------------ 226

Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFS 862
                L  + L++N +  +  A   +   L+    S +     +P+ +    L      +
Sbjct: 227 -----LQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLA 277

Query: 863 SNRLEG 868
           +N L+G
Sbjct: 278 ANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 41/271 (15%), Positives = 73/271 (26%), Gaps = 9/271 (3%)

Query: 627 CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686
           C       +            +P  +   +  + + L  N +S     S   C  L  + 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
           +  N  +    A          + +  + +   V P     L  L  L L    L    P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 747 TCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLR 806
                  A+      D+         F   G   ++           +          L 
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-----NRISSVPERAFRGLH 177

Query: 807 LLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL 866
            L  + L  N+ +   P     L  L +L L  N  S    E +  +  L+ L  + N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 867 EGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897
             +         +L  F  S + +   +P  
Sbjct: 238 VCDCR-ARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 47/258 (18%), Positives = 82/258 (31%), Gaps = 11/258 (4%)

Query: 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695
            + L  N+ +     S  A   L  L L +N L+     +      LE +D+ +N    +
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAM 755
           V         R+  L L       + P     LA L+ L L  N L         +   +
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 756 AT-FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLS 814
              FL  + I ++   +          +  Q     +     + L           + L 
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL------MTLYLF 209

Query: 815 NNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT 874
            N  S      +  LR L+ L L+ N +           A L+    SS+ +   +P+  
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 875 VNLVFLSHFNISYNNLSG 892
                     ++ N+L G
Sbjct: 269 AGRDLK---RLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 14/215 (6%)

Query: 110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLR 169
                + +N    +     +P  L    +   L LS           +   + L  LNL 
Sbjct: 8   KVASHLEVNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 170 PNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHF 229
              L          L     L  L    +  +++ + PL+   L +L VL ++  +L+  
Sbjct: 64  RAELT--------KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 230 PPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
           P  ++     L  L L  N+    L    L     L  L L++NN        +    +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
             L L  N     IP+       L +  L  N   
Sbjct: 175 DTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 18/204 (8%)

Query: 262 LCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSN 321
           + + + ++    N    +P  +        L LS N         L  ++RL  L+L   
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 322 RLQGRISSVLLENLSSIQSLDLSF----NELEWKIPRSFSRFCNLRSISLSGIQLSHQKV 377
            L        L  L ++              +     +       R  SL    L     
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 378 SQVLAIFSGCVSDVLESL----------DLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427
            Q L +    +  +   L           L+N  L+      +   + L+++ L ENS+ 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 428 GQVPWSLGKLSSLRYLDISNNQLN 451
             +P        L +  +  N   
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 186 DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDL 245
            ++    ++    +L+ +       +  +   +L L+   L  F   ++  ++ L  L+L
Sbjct: 8   KVASHLEVNCDKRNLTALP-----PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 246 SHNQFDNSLIATQLYGLCNLVFLDLSD--------------------NNFQGPIPDTIQN 285
              +     +   L  L  L                           N         ++ 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSF 345
              L+ L L  N    L P  L    +LE LSL++N L    + +L   L ++ +L L  
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL-NGLENLDTLLLQE 181

Query: 346 NELEWKIPRSFSRFCNLRSISLSG 369
           N L + IP+ F     L    L G
Sbjct: 182 NSL-YTIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 39/243 (16%), Positives = 59/243 (24%), Gaps = 38/243 (15%)

Query: 625 PDCWMNWRY-LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE 683
           P C ++     L +  D    T  LP  L        LHL  N L      +L   T L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG 743
            +++   E                        K      L +     L    L    L G
Sbjct: 59  QLNLDRAEL----------------------TKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96

Query: 744 TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKA 803
                ++        L S  +  ++   +        N  +      L            
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL- 155

Query: 804 VLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSS 863
                     +NN  +      +  L  L +L L  N     IP+      LL       
Sbjct: 156 ----------ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 864 NRL 866
           N  
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 25/199 (12%), Positives = 50/199 (25%), Gaps = 22/199 (11%)

Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
              ++     L+ +L   + K      + LSEN +      +L   + L  L++   +L 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 452 GTVSEIHFANLSSLTFFYA------SRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPS 505
               +     L +L   +                    V   +L  L L +         
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 506 WLHSQNH-------------LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552
                N               +      +  +  +P      +   + L L  N ++   
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 553 PNLTEVSQLGTLDLSANNL 571
                   L    L  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 47/294 (15%), Positives = 93/294 (31%), Gaps = 31/294 (10%)

Query: 189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHN 248
           L + LDL+G +L     G L++   + ++  +     +   P     +   +  +DLS++
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNS 56

Query: 249 QFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLN 308
             + S +   L     L  L L       PI +T+   ++L  L+LS             
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 309 KFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
             S                       L  +          +            +  ++LS
Sbjct: 117 LSS--------------------CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156

Query: 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSE-NSIS 427
           G + + QK      +        L+  D            +  +   L  + LS    I 
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANP 481
            +    LG++ +L+ L +     +GT+  +      +L     + +  T  A P
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLL----KEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 42/316 (13%), Positives = 87/316 (27%), Gaps = 46/316 (14%)

Query: 394 SLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
           +LDL+   L   +T ++    V+ +     + +  Q          ++++D+SN+ +  +
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHL 513
                 +  S L         L+            L  L+L  C  G    +     +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSC 120

Query: 514 VNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG 573
             LD  +         +  +        +++   + G   NL +                
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--------------- 165

Query: 574 QLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRY 633
                                              L  +   +  +L  +    +    Y
Sbjct: 166 ------------------------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 634 LLVLRLDN-NKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF 692
           L  L L        +    LG +  L++L +      GTL +       L    I  + F
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHF 258

Query: 693 SGNVPAWIGERFPRMI 708
           +      IG +  + I
Sbjct: 259 TTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 41/265 (15%), Positives = 90/265 (33%), Gaps = 8/265 (3%)

Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
           LDL+  N    +   + +   +       +     + E      R++++ LS++ ++   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSG- 386
              +L   S +Q+L L    L   I  + ++  NL  ++LSG     +   Q L      
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 387 -CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDI 445
               ++    D +   +  ++ +       LN     +N     +   + +  +L +LD+
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 446 SNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF-QLEELDLRSCYLGPPFP 504
           S++ +        F  L+ L     SR    +      +     L+ L +          
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 505 SWLHSQNHLVNLDISDSGIVDTIPN 529
               +   L +L I+ S        
Sbjct: 243 LLKEA---LPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 4/222 (1%)

Query: 97  SSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQ 156
             + + +          + +++LS +  +   +   L     L+ L L G      I N 
Sbjct: 31  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

Query: 157 IGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSL 216
           +   SNL  LNL        +           L E       D ++      V +   ++
Sbjct: 91  LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 150

Query: 217 LVLQLAGCQLSHFPPLSVA---NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD- 272
             L L+G + +              +LV LDLS +    +    + + L  L  L LS  
Sbjct: 151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210

Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314
            +        +    +L+ L +        +         L+
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 38/296 (12%), Positives = 81/296 (27%), Gaps = 39/296 (13%)

Query: 563 TLDLSANNLSGQLP--LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLL 620
           TLDL+  NL   +   LL+  V+     ++ +   +                        
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH--------------------- 42

Query: 621 AGEIPDCWMNWRYLLVLRLDNNKFTGK-LPTSLGALSLLRSLHLRNNNLSGTLPVSLGNC 679
                    +   +  + L N+      L   L   S L++L L    LS  +  +L   
Sbjct: 43  --------FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 94

Query: 680 TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKIL----V 735
           + L  +++                    +  +  S  F          +A +        
Sbjct: 95  SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 736 LAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLE 795
           L+G   +       +        +  D   ++   +D        N  +         + 
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 796 GKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIG 851
            +TL     +  L  + +      G +     +   L  L ++ + F+      IG
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 11/92 (11%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 807 LLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL 866
           L   +DL+      ++   + + + + +     +F    + E+      ++ +D S++ +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 867 EGE-IPKNTVNLVFLSHFNISYNNLSGEVPDE 897
           E   +         L + ++    LS  + + 
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 41/241 (17%), Positives = 68/241 (28%), Gaps = 8/241 (3%)

Query: 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGF-VGMIPNQIGNLSNLQYLNLRPN 171
            +I      +     Q      S   ++ +DLS +   V  +   +   S LQ L+L   
Sbjct: 24  GVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 172 YLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP 231
            L    V  L    +L  L     SG     +       + L  L +         H   
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 232 LSVANFSSLVTLDLS---HNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTS 288
                  ++  L+LS    N   + L          +          +            
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 289 LRHLDLSS-NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
           L+HL LS            L +   L+ L +      G +  +L E L  +Q     F  
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL-QLLKEALPHLQINCSHFTT 260

Query: 348 L 348
           +
Sbjct: 261 I 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 53/309 (17%), Positives = 101/309 (32%), Gaps = 51/309 (16%)

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
           + LDL+  +     P+   +      ++    R           +   +Q +DLS + +E
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ 409
                                      VS +  I S C    L++L L    LS  + N 
Sbjct: 60  ---------------------------VSTLHGILSQCSK--LQNLSLEGLRLSDPIVNT 90

Query: 410 IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
           + K   L  ++LS  S   +        S  R  +++ +       +     ++ ++   
Sbjct: 91  LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 150

Query: 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPN 529
              N    + N                        + +    +LV+LD+SDS ++     
Sbjct: 151 TQLNLSGYRKNLQK-----------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 530 RFWKSITQFNYLSLSN-NQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDL 587
           + +  +    +LSLS    I  E    L E+  L TL +      G L LL   +  L +
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

Query: 588 SKNKLSGSI 596
           + +  +   
Sbjct: 254 NCSHFTTIA 262

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 7e-09
 Identities = 54/451 (11%), Positives = 115/451 (25%), Gaps = 20/451 (4%)

Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG----PIPDTIQNWTSLRHLDL 294
            + +LD+   +  ++  A  L  L     + L D          I   ++   +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 295 SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR 354
            SN    +    + +  +     +    LQ    +     + S     L   +       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH---- 118

Query: 355 SFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFK 414
             S      +      +       ++  +     S    S +   + L      +     
Sbjct: 119 -LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474
             +  +     +   +  S  +L +L+         N        A+ +SL       N 
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
           L         P        LR+ ++     +     +    L   +S    ++       
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSG 594
                                 +         S  + S          + +  ++ + +G
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRLEDAG 356

Query: 595 SILHFVCHETNGTRLTQIINLEDNLL----AGEIPDCWMNWRYLLVLRLDNNKFTGKLPT 650
                      G+ L +++ L D  +       +    +    L  L L NN        
Sbjct: 357 VRELCQGLGQPGSVL-RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 651 SLGA-----LSLLRSLHLRNNNLSGTLPVSL 676
            L         LL  L L +   S  +   L
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 1e-08
 Identities = 53/453 (11%), Positives = 110/453 (24%), Gaps = 21/453 (4%)

Query: 264 NLVFLDLSDNNFQ-GPIPDTIQNWTSLRHLDLSSNHFSY----LIPEWLNKFSRLEYLSL 318
           ++  LD+           + +      + + L     +      I   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 319 SSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVS 378
            SN     +  V +  +   Q L     +++    ++         +  S ++       
Sbjct: 63  RSN----ELGDVGVHCVL--QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 116

Query: 379 QVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLS 438
             L+      + +    +            Q+    +  +      S+    P       
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 439 SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCY 498
           S   ++ +  ++     +     L +L        S   +     V              
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL-GS 235

Query: 499 LGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEV 558
                         L++       +         K       +  +   +        E+
Sbjct: 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 559 SQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDN 618
              G   L    L     L +  V     +    S        +            LED 
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 619 LLAGEIPDCWMNWRYLLVLRLDNNKFTGK----LPTSLGALSLLRSLHLRNNNLSGTLPV 674
            +             L VL L +   +      L  +L A   LR L L NN L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 675 SLG-----NCTELETIDIGENEFSGNVPAWIGE 702
            L          LE + + +  +S  +   +  
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 55/452 (12%), Positives = 111/452 (24%), Gaps = 28/452 (6%)

Query: 439 SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQ----LEELDL 494
            ++ LDI   +L+          L            LT     +     +    L EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 495 RSCYLGPPFPSWL-----HSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
           RS  LG      +          +  L + +  +          ++     L   +   +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 550 GEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRL 609
                  ++   G LD        QL   + +    +   +     +      +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV----LRAKPDFKELTVSN 178

Query: 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS 669
             I      +L   + D       L +          +    + A           +N  
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA 729
           G + ++      L         +                +      K          +  
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV---LRAKESLKELSLAGNEL 295

Query: 730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789
             +   L    L        S +    +F  +   +     +   F  +      +  + 
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE----IPAEITVLRELRSLNLSHNFFSGR 845
            +  L        +VLR+L    L++   S      + A +     LR L+LS+N     
Sbjct: 356 GVRELCQGLGQPGSVLRVL---WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 846 IPENIGA-----MALLESLDFSSNRLEGEIPK 872
               +         LLE L         E+  
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 236 NFSSLVTLDLSHNQFDN---SLIATQLYGLCNLVFLDLSDNNFQGPIPDTI-----QNWT 287
             S L  L L+     +   S +A  L    +L  LDLS+N         +     Q   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 288 SLRHLDLSSNHFSYLIPEWL 307
            L  L L   ++S  + + L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 808 LTNIDLSNNKFSGEIPAEI-TVLRELRSLNLSHNFFSGRIPENIGAM----ALLESLDFS 862
           + ++D+   + S    AE+  +L++ + + L     +    ++I +       L  L+  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892
           SN L        +  +      I   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 5e-06
 Identities = 55/472 (11%), Positives = 127/472 (26%), Gaps = 36/472 (7%)

Query: 392 LESLDLSNTTLSGS-LTNQIGKFKVLNSVDLSENSISGQ----VPWSLGKLSSLRYLDIS 446
           ++SLD+    LS +     +   +    V L +  ++      +  +L    +L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 447 NNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW 506
           +N+L           L +                    P  ++++L L++C L       
Sbjct: 64  SNELGDVGVHCVLQGLQT--------------------PSCKIQKLSLQNCCLTGAGCGV 103

Query: 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDL 566
           L S    +          + + +   + + +         +           +    L  
Sbjct: 104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 163

Query: 567 SANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD 626
                     L  SN  + +                      L        +    ++  
Sbjct: 164 VLRAKPDFKELTVSNNDINEAGVRV---LCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220

Query: 627 CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686
              +   L  L L +NK        L    L  S  LR   +      + G       + 
Sbjct: 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280

Query: 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
             E+    ++           ++          +  L +   +F        +++     
Sbjct: 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340

Query: 747 TCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLR 806
             +    +      +      Q         +   + +  V +   +    TL       
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL---LANH 397

Query: 807 LLTNIDLSNNKFSGEIPAEIT-VLRE----LRSLNLSHNFFSGRIPENIGAM 853
            L  +DLSNN        ++   +R+    L  L L   ++S  + + + A+
Sbjct: 398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGF----VGMIPNQIGNLSNLQYLNLR 169
           +  L++   +    +    L  +   + + L   G        I + +     L  LNLR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 170 PNYLGGLYVEDLGWL--YDLSLLENLDLSG 197
            N LG + V  +          ++ L L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 9/105 (8%)

Query: 247 HNQFDNSLIATQLYGLCNLVFLDLSDNNFQG----PIPDTIQNWTSLRHLDLSSNHFSYL 302
            +     L          L  L L+D +        +  T+    SLR LDLS+N     
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 303 IPEWL-----NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
               L          LE L L        +   L        SL 
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA----NFSSLVTLDL 245
           +++LD+   +LS      L+   L+   V++L  C L+      ++       +L  L+L
Sbjct: 4   IQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 246 SHNQFDNSLIATQLYGL----CNLVFLDLSDNNFQGPIPDTIQNW 286
             N+  +  +   L GL    C +  L L +    G     + + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 107

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 7e-05
 Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 9/101 (8%)

Query: 215 SLLVLQLAGCQLSHFPPLSVA-NFSSLVTLDLSHNQFDN---SLIATQLYGLCNLVFLDL 270
            +  L +   +LS      +         + L            I++ L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 271 SDNNFQGPIPDTI-----QNWTSLRHLDLSSNHFSYLIPEW 306
             N         +          ++ L L +   +      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 215 SLLVLQLAGCQLSHFPPLSVA----NFSSLVTLDLSHNQFDNS----LIATQLYGLCNLV 266
            L VL LA C +S     S+A       SL  LDLS+N   ++    L+ +     C L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 267 FLDLSDNNFQGPIPDTIQ 284
            L L D  +   + D +Q
Sbjct: 430 QLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 304 PEWLNKFSRLEYLSLSSNRLQGRISSVL---LENLSSIQSLDLSFNELEWKIPRSFSRF- 359
                  S L  L L+   +     S L   L    S++ LDLS N L            
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 360 ----CNLRSISLSGIQLSHQKVSQVLAI 383
               C L  + L  I  S +   ++ A+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 242 TLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSY 301
            L L+H       +   L  L  +  LDLS N  +   P  +     L  L  S N    
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 302 LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL---EWKIPRSFSR 358
           +         +   L L +NRLQ   +   L +   +  L+L  N L   E    R    
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 359 FCNLRSI 365
             ++ SI
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 540 YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHF 599
            L L++  +   + +L ++  +  LDLS N L    P LA+   +  L  +  +   +  
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 600 VCHETNGTRLTQIINLEDNLLAG-EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLL 658
           V +      L     L +N L         ++   L++L L  N    +         +L
Sbjct: 61  VANLPRLQEL----LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 659 RSL 661
            S+
Sbjct: 117 PSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 563 TLDLSANNLSGQLPLLA--SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLL 620
            L L+  +L+  L  L     V  LDLS N+L                            
Sbjct: 2   VLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA------ 54

Query: 621 AGEIPDCWMNWRYLLVLRLDNNKFTG-KLPTSLGALSLLRSLHLRNNNLSG 670
             E  D   N   L  L L NN+         L +   L  L+L+ N+L  
Sbjct: 55  -LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 441 RYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLG 500
           R L +++  L       H   L  +T    S N L     P    +  LE L      L 
Sbjct: 1   RVLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 56

Query: 501 PPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQ 560
                       L  L + ++ +  +   +   S  +   L+L  N +  E      +++
Sbjct: 57  NVDGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 561 L 561
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 23/105 (21%)

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSV-LLENLSSI---------- 338
           R L L+    +  +   L +   + +L LS NRL+    ++  L  L  +          
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 339 ---------QSLDLSFNELE-WKIPRSFSRFCNLRSISLSGIQLS 373
                    Q L L  N L+     +       L  ++L G  L 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 164 QYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAG 223
           + L+L    L       L  L  L L+ +LDLS   L  +         L  L       
Sbjct: 1   RVLHLAHKDL-----TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL-----QA 50

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF---QGPIP 280
              +      VAN   L  L L +N+   S     L     LV L+L  N+    +G   
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 281 DTIQNWTSLRHL 292
              +   S+  +
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 584 VLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNK 643
           VL L+   L+      +CH      +T + +L  N L    P             L  + 
Sbjct: 2   VLHLAHKDLTV-----LCHLEQLLLVTHL-DLSHNRLRALPPALAALRCLE---VLQASD 52

Query: 644 FTGKLPTSLGALSLLRSLHLRNNNLSGT-LPVSLGNCTELETIDIGENEFSG--NVPAWI 700
              +    +  L  L+ L L NN L  +     L +C  L  +++  N       +   +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 701 GERFPRMIILI 711
            E  P +  ++
Sbjct: 113 AEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 12/115 (10%)

Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
           + L L+  +L   +     +   +  + LS  +L               ++ +     L 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQ 49

Query: 399 NTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLGKLSSLRYLDISNNQLNG 452
            +  +    + +     L  + L  N +        L     L  L++  N L  
Sbjct: 50  ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 52/327 (15%), Positives = 88/327 (26%), Gaps = 23/327 (7%)

Query: 559 SQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLS------GSILHFVCHETNGTRLTQI 612
            Q   L+L+   LS  LP L  ++  L  S N L+       S+   +    N   L+ +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTL 672
             L + L         +            +     L         L  +   NN L    
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 673 PVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK 732
            +           D    +   ++P  +                        L  L  + 
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN------ILEELPELQNLPFLTTIY 210

Query: 733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI 792
                   L    P+  +             +       D S                L 
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA 852
               +  +   +   L  +++SNNK   E+PA       L  L  S N  +  +PE    
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN 325

Query: 853 MALLESLDFSSNRLEG--EIPKNTVNL 877
              L+ L    N L    +IP++  +L
Sbjct: 326 ---LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 9e-07
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
              N     I        SL  L++S+N    L         RLE L  S N L     +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHL-----A 317

Query: 330 VLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLR 363
            + E   +++ L + +N L  + P       +LR
Sbjct: 318 EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 247 HNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW 306
           +    ++ I +      +L  L++S+N     +P        L  L  S NH +  +PE 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLAE-VPEL 322

Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
                 L+ L +  N L+        +   S++ L ++
Sbjct: 323 P---QNLKQLHVEYNPLRE-----FPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 49/331 (14%), Positives = 95/331 (28%), Gaps = 31/331 (9%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
               L+L++      +P+   +   L  L  S N  + L PE       L   + +   L
Sbjct: 39  QAHELELNNLGLSS-LPELPPH---LESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL 93

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
                 +    +S+ Q   L   +    +        +L+ +      L           
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGN 149

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
                   L++L       + + + +      L+   +   +   +    L  L  L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPF 503
              NN L             ++   Y +      ++                        
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN-------IFSGLSEL 262

Query: 504 PSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGT 563
           P  L+  N   N                         L++SNN++  E+P L    +L  
Sbjct: 263 PPNLYYLNASSN-----------EIRSLCDLPPSLEELNVSNNKLI-ELPAL--PPRLER 308

Query: 564 LDLSANNLSGQLPLLASNVMVLDLSKNKLSG 594
           L  S N+L+ ++P L  N+  L +  N L  
Sbjct: 309 LIASFNHLA-EVPELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 52/327 (15%), Positives = 100/327 (30%), Gaps = 24/327 (7%)

Query: 387 CVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDIS 446
           C+      L+L+N  LS SL       + L     S NS++ ++P     L SL   + +
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 447 NNQLNGTVSEIHFANLSSLTF-----FYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP 501
              L+     + +  +S+           S     +  + N +         L     G 
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQL 561
                L    +L  L    +               +      +  +   E+ NL  ++ +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 562 GTLDLSANNLSGQLPLLASNVMVLDLSKNKLSG----SILHFVCHETNGTRLTQIINLED 617
              +     L    P L +  +  +   +        + L    +  +G           
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 618 NLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLG 677
           N  + EI         L  L + NNK   +LP        L  L    N+L+  +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ 324

Query: 678 NCTELETIDIGENEFSG--NVPAWIGE 702
           N   L+ + +  N      ++P  + +
Sbjct: 325 N---LKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 224 CQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI 283
              S+          SL  L++S+N+    L A        L  L  S N+    +P+  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL-IELPA----LPPRLERLIASFNHLAE-VPELP 323

Query: 284 QNWTSLRHLDLSSNHFSYLIPEWLNKFSRL 313
           QN   L+ L +  N      P+       L
Sbjct: 324 QN---LKQLHVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLC-NLVFLDLS 271
             SL  L ++  +L   P L       L  L  S N         ++  L  NL  L + 
Sbjct: 283 PPSLEELNVSNNKLIELPAL----PPRLERLIASFNHL------AEVPELPQNLKQLHVE 332

Query: 272 DNNFQGPIPDTIQNWTSLRHLDLSS 296
            N  +   PD      S+  L ++S
Sbjct: 333 YNPLRE-FPDIP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 44/326 (13%), Positives = 89/326 (27%), Gaps = 22/326 (6%)

Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL--------NGTVSEIHFANLSSLTF 467
            + ++L+   +S  +P        L  L  S N L        +     +   NL +L+ 
Sbjct: 40  AHELELNNLGLS-SLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 468 FYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTI 527
                  L +  N             L+   +       L      +    + +  ++ +
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 528 PNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDL 587
           P           Y   ++ +   ++P   E    G   L        LP L +     +L
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 588 SKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK 647
            K            +  +          +         + +     L       N  + +
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 648 LPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707
           + +       L  L++ NN L   LP        LE +    N  +      + E    +
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-----VPELPQNL 326

Query: 708 IILILRSNKFHGVFPLELCHLAFLKI 733
             L +  N     FP     +  L++
Sbjct: 327 KQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 57/367 (15%), Positives = 102/367 (27%), Gaps = 58/367 (15%)

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNL 362
           + + L++  +   L L++  L     S L E    ++SL  S N L  ++P       +L
Sbjct: 32  LRDCLDR--QAHELELNNLGL-----SSLPELPPHLESLVASCNSLT-ELPELPQSLKSL 83

Query: 363 RSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422
              + +   LS           S    + L  L  S+      + N   K        L 
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 423 ENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRN--------- 473
             +        L +L +L +L       N                   +           
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 474 -SLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFW 532
             LT     N +     +                   +       +  S  + +  +   
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 533 KSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL 592
            ++   N  S     +    P+L E      L++S N L  +LP L   +  L  S N L
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEE------LNVSNNKLI-ELPALPPRLERLIASFNHL 316

Query: 593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSL 652
           +                             E+P+   N   L  L ++ N    + P   
Sbjct: 317 A-----------------------------EVPELPQN---LKQLHVEYNPLR-EFPDIP 343

Query: 653 GALSLLR 659
            ++  LR
Sbjct: 344 ESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 48/328 (14%), Positives = 83/328 (25%), Gaps = 27/328 (8%)

Query: 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ 249
              L+L+ + LS +            L  L  +   L+  P L      SL +L + +N 
Sbjct: 40  AHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNN 89

Query: 250 FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNK 309
                    L     +    L                     L    +    L       
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 310 FSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
               E   L +      I +                + +                   + 
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 370 IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLN------SVDLSE 423
              ++   +      S    +V ++       L  SLT       + +            
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 424 NSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNW 483
           N+ S ++        SL  L++SNN+L     E+  A    L    AS N L     P  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL----IELP-ALPPRLERLIASFNHLA--EVPEL 322

Query: 484 VPVFQLEELDLRSCYLG--PPFPSWLHS 509
                L++L +    L   P  P  +  
Sbjct: 323 PQ--NLKQLHVEYNPLREFPDIPESVED 348

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 16/218 (7%)

Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
            L N + +    +N    +  T  +   +  L       + +  E +   + L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV 380
           N++        L  ++ ++        +         +  +L S  ++ +       +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 381 LAIFSGCVSDVLESLDL-------SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWS 433
           +          +  L         S      S    +     L ++   +N IS   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYAS 471
           L  L +L  + + NNQ++        AN S+L     +
Sbjct: 191 LASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 17/217 (7%)

Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
             + I +    ++            +  +  L   G G   +    +  L+NL  L L+ 
Sbjct: 18  LANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 171 NYL------GGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGC 224
           N +        L       L    L     ++G+   K  +         + L       
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 225 QLSHFPPL--SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDT 282
            L        +++  + L  L             T L  L  L  L   DN      P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
           + +  +L  + L +N  S + P  L   S L  ++L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 8e-06
 Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 23/218 (10%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSG 197
           N   +    +     +     +L  +  L+     +       +  +  L+ L  L+L  
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-----TTIEGVQYLNNLIGLELKD 72

Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
             ++ ++    +T      L         +     S+       T               
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 258 QLYGLCNLVFLDL-----------SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW 306
            LY   N +               S  N Q      + N + L  L    N  S + P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
           L     L  + L +N++        L N S++  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 22/220 (10%), Positives = 56/220 (25%), Gaps = 20/220 (9%)

Query: 630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE 689
                + +    +  T     +   L  + +L      ++ T+   +     L  +++ +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 690 NEF----------SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN 739
           N+                   G     +  +    +                   +    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 740 NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTL 799
            L   +    +                    SD +       +T    ++  I+     +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS----DI 188

Query: 800 TFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSH 839
           +  A L  L  + L NN+ S   P  +     L  + L++
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 625 PDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET 684
                N   L  L+ D+NK +   P  L +L  L  +HL+NN +S   P  L N + L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 685 IDI 687
           + +
Sbjct: 222 VTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 25/207 (12%), Positives = 66/207 (31%), Gaps = 18/207 (8%)

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTV 454
           +    + ++ ++T        + ++      ++      +  L++L  L++ +NQ+    
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79

Query: 455 SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLV 514
              +   ++ L        +++  A    +    L    +          +       L 
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 515 NL------------DISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLG 562
            +                 G           ++++   L   +N+I   I  L  +  L 
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASLPNLI 198

Query: 563 TLDLSANNLSGQLPLLA-SNVMVLDLS 588
            + L  N +S   PL   SN+ ++ L+
Sbjct: 199 EVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
            +VD +   +  ++P  +        L +++N+L    S+  F  L  L      RN LT
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT 536
                 +     ++EL L    +           + L  L++ D+ I   +    ++ + 
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLN 126

Query: 537 QFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSI 596
               L+L++N  +           L    L+        P    +V + DL  +      
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS------ 180

Query: 597 LHFVCHETNGT 607
             F C   N  
Sbjct: 181 -EFKCSSENSE 190

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 563 TLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG 622
           T+D +   L      +  +   L L+ N+L                L ++    + L  G
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLT-G 68

Query: 623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTEL 682
             P+ +    ++  L+L  NK           L  L++L+L +N +S  +P S  +   L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNL 741
            ++++  N F+ N        + R     L         P     +  ++I  L  +  
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 247 HNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW 306
                  +      GL  L  L+L DN     +P + ++  SL  L+L+SN F+      
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348
                 L   SL+    +    S     +  +Q  DL  +E 
Sbjct: 146 -WFAEWLRKKSLNGGAARCGAPS----KVRDVQIKDLPHSEF 182

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 13/194 (6%)

Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
                +  +L   +    +  T     S+  +  +++    +    +     +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ-LSHQKVSQ 379
           N+L        L+NL  +   +    +L         +  +L    +S I  L H    +
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 380 VLAIFSGCVSDVLESLDLSNTTLSGSLTNQI------GKFKVLNSVDLSENSISGQVPWS 433
            L + +  ++D+     L+         NQI           L ++ LS+N IS     +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 434 LGKLSSLRYLDISN 447
           L  L +L  L++ +
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 28/190 (14%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572
            +  ++    + D +      SI Q   +  +N+ I   +  +  +  +  L L+ N L+
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQ---IIANNSDIKS-VQGIQYLPNVTKLFLNGNKLT 81

Query: 573 GQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWR 632
              PL  +N+  L       +         +    +   + +   + + G +    +   
Sbjct: 82  DIKPL--ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 633 YLLVLRLDNNKFTGKL---------------PTSLGALSLLRSLHLRNNNLSGTLPVSLG 677
           YL   ++ +     +L                  L  L+ L++L+L  N++S  L  +L 
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALA 197

Query: 678 NCTELETIDI 687
               L+ +++
Sbjct: 198 GLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 46/211 (21%), Positives = 67/211 (31%), Gaps = 23/211 (10%)

Query: 110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLR 169
            F   I  NL             L S   +  +  + +    +    I  L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 170 PNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHF 229
            N L  +       L +L  L  L L    +  +S+   +                L H 
Sbjct: 77  GNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKS---------LSLEHN 122

Query: 230 PPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSL 289
               +     L  L+  +   +     T L  L  L  L L DN     +P  +   T L
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
           ++L LS NH S L    L     L+ L L S
Sbjct: 181 QNLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 22/185 (11%)

Query: 420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKA 479
           +L + S++  V  +  +L+S+  +  +N+ +    S      L ++T  + + N LT   
Sbjct: 30  NLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 480 NPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFN 539
               +       LD                ++  +  +            +        N
Sbjct: 85  PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144

Query: 540 YLS--------------LSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLAS--NVM 583
            ++                 +    +I  L  +++L  L LS N++S  L  LA   N+ 
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LRALAGLKNLD 203

Query: 584 VLDLS 588
           VL+L 
Sbjct: 204 VLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 16/177 (9%)

Query: 205 NGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCN 264
              +  N L S+  +      +     +      ++  L L+ N+  +      L  L  
Sbjct: 37  TDAVTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKPLANLKNLGW 94

Query: 265 LVFLDLSDNNFQGPIPDTIQNWTSLRH------LDLSSNHFSYLIPEWLNKFS------R 312
           L   +    +             SL H        L        +    NK +      R
Sbjct: 95  LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR 154

Query: 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369
           L  L   S         V L  L+ +Q+L LS N +     R+ +   NL  + L  
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 41/322 (12%), Positives = 93/322 (28%), Gaps = 31/322 (9%)

Query: 392 LESLDLSNTTLSG----SLTNQIGKFKVLNSVDLSENSISGQ----VPWSLGKLSSLRYL 443
           +E   L    ++     S+   + +   +  + LS N+I  +    +  ++     L   
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPF 503
           + S+        EI  A    L          T++ + N       E L        P  
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 504 PSWLHSQNHL-VNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLG 562
             +LH+              + +   N+  K+      +    N++          +   
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 563 TLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAG 622
              L    +                    +   +L  + +      L    N   +L + 
Sbjct: 185 HRLLHTVKMVQNGI-----------RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLG------ALSLLRSLHLRNNNLSGTLPVSL 676
            +     +W  L  L L++   + +   ++           L++L L+ N +      +L
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 677 -----GNCTELETIDIGENEFS 693
                    +L  +++  N FS
Sbjct: 294 KTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 6e-05
 Identities = 32/319 (10%), Positives = 72/319 (22%), Gaps = 22/319 (6%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSY----LIPEWLNKFSRLEYLSLS 319
           +L    ++  + +  +   +    S++ + LS N         + E +     LE    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 320 SNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQ 379
                 R+   + E L  +    L   +L        +     +   +  +         
Sbjct: 68  DIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 380 VLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSS 439
            L           +                    + +        + S +          
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK------ 180

Query: 440 LRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYL 499
                  +++L  TV  +                    +                 S   
Sbjct: 181 ----TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236

Query: 500 GPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN----- 554
                     +  L +  +S  G    +             L L  N+I  +        
Sbjct: 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 555 -LTEVSQLGTLDLSANNLS 572
              ++  L  L+L+ N  S
Sbjct: 297 IDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 38/323 (11%), Positives = 91/323 (28%), Gaps = 27/323 (8%)

Query: 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLYDLSLLENLDLS 196
           +L+   ++       +   +    +++ + L  N +G      L   +     LE  + S
Sbjct: 9   SLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 197 GVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIA 256
            +   +V +       L    +L+            +    +    +D          + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 257 TQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316
               GL       ++    +  +    +N   LR +    N       +   K  +   L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 317 SLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQK 376
             +   +Q  I                    +E  +    +    L+ + L     +H  
Sbjct: 188 LHTVKMVQNGIR----------------PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 231

Query: 377 VSQVLAIFSGCVSDVLESLDLSNTTLSGSL----TNQIGKFKVLNSVDLSENSISGQVPW 432
            S +        +     L+    +  G+          +   L ++ L  N I      
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 291

Query: 433 SL-----GKLSSLRYLDISNNQL 450
           +L      K+  L +L+++ N+ 
Sbjct: 292 TLKTVIDEKMPDLLFLELNGNRF 314

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 23/219 (10%), Positives = 52/219 (23%), Gaps = 8/219 (3%)

Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
           N + L       +         +  L  +++S N    +I   +       +        
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
                +                      I              +      +  +  +   
Sbjct: 90  NLLYIN---PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 146

Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
               +S     L L+   +           ++        N++           S    L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPN 482
           DIS  +++ ++      NL  L     +R++  LK  P 
Sbjct: 207 DISRTRIH-SLPSYGLENLKKLR----ARSTYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 14/80 (17%)

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR 322
                    +NN +    D     +    LD+S      L    L    +L   S     
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--- 233

Query: 323 LQGRISSVLLENLSSIQSLD 342
                      NL  + +L+
Sbjct: 234 -----------NLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 5/217 (2%)

Query: 128 QIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL 187
           +IP  L    N   L         +         +L+ + +  N +  +   D+      
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSH 247
                + +   +     N     N      +L              + +   ++     +
Sbjct: 80  L--HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 137

Query: 248 NQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWL 307
                    + +      V L L+ N  Q                   +N+   L  +  
Sbjct: 138 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVF 197

Query: 308 NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS 344
           +  S    L +S  R+   + S  LENL  +++    
Sbjct: 198 HGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 10/51 (19%), Positives = 15/51 (29%)

Query: 247 HNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
            N     L     +G    V LD+S           ++N   LR     + 
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 28/235 (11%), Positives = 61/235 (25%), Gaps = 7/235 (2%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
           S  V      +++  P        + + L     +    +      G  +L  +++S N+
Sbjct: 9   SNRVFLCQESKVTEIPS---DLPRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQND 64

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
               I   + +     H        + L        +      L  +     I  +   +
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS--NTGIKHLPDVH 122

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394
                   L   +    I           S     + L+   + ++    +   + + E 
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNCAFNGTQLDEL 181

Query: 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
               N  L     +          +D+S   I     + L  L  LR     N +
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 15/177 (8%)

Query: 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP------WSLGKLSSLRYLDISNNQLN 451
             TT+  ++     + K + + +  +  + G +P       +L  L + ++L +S N + 
Sbjct: 3   KATTIKDAIRI-FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI- 60

Query: 452 GTVSEI-HFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510
               +I   + + +L      RN          +        +L   Y      S +   
Sbjct: 61  ---EKISSLSGMENLRILSLGRNL---IKKIENLDAVADTLEELWISYNQIASLSGIEKL 114

Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLS 567
            +L  L +S++ I +        ++ +   L L+ N ++ +       S+     + 
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 8/145 (5%)

Query: 203 VSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL 262
           +      TNA+R    L L G ++     L  A       +D S N+            L
Sbjct: 8   IEQAAQYTNAVR-DRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRK---LDGFPLL 62

Query: 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLS---SNHFSYLIPEWLNKFSRLEYLSLS 319
             L  L +++N          Q    L  L L+         L P    K      +  +
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 320 SNRLQGRISSVLLENLSSIQSLDLS 344
               +      ++  +  ++ LD  
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 629 MNWRYLLVLR-LDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687
           M+ RY    + LD      +    L A ++   L+ R++  + TL +   N  EL ++++
Sbjct: 16  MSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNL 72

Query: 688 GENEFSGNVP-AWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
             N        + I ++ P + IL L  N+      L+      L+ L L GN+LS T  
Sbjct: 73  SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 244 DLSHNQFDN-SLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYL 302
           +L   Q +   LI ++ Y       LDL            +        L+  S+  +  
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQA-LDLKGLRS----DPDLVAQNIDVVLNRRSS-MAAT 56

Query: 303 IPEWLNKFSRLEYLSLSSNRLQGRIS-SVLLENLSSIQSLDLSFNELEWKIPRSFSRFCN 361
           +         L  L+LS+NRL      S +++   +++ L+LS NEL+ +      +   
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 362 LRSISLSGIQLSH 374
           L  + L G  LS 
Sbjct: 117 LEELWLDGNSLSD 129

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 18/160 (11%)

Query: 118 NLSYNDFKGIQIPRFLGSMGNL--RFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGG 175
            L     +  Q+   +    +   + LDL G          +   +    LN R +    
Sbjct: 3   ELKPEQVE--QLKLIMSKRYDGSQQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAAT 56

Query: 176 LYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA 235
           L         ++  L +L+LS   L ++ +   +     +L +L L+G +L     L   
Sbjct: 57  L----RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI 112

Query: 236 NFSSLVTLDLSHNQFDNSLIATQLY------GLCNLVFLD 269
               L  L L  N   ++      Y          L+ LD
Sbjct: 113 KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG--PIPDTIQNWTSLRHLD 293
             +  V L+   +    + +      +  L+ L+LS+N       +   +Q   +L+ L+
Sbjct: 40  AQNIDVVLNRRSSM--AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRIS------SVLLENLSSIQSLD 342
           LS N           K  +LE L L  N L           S + E    +  LD
Sbjct: 98  LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 371 QLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQV 430
           +L  ++V Q+  I S       ++LDL        L  Q     VLN       ++    
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ-NIDVVLNRRSSMAATLRI-- 59

Query: 431 PWSLGKLSSLRYLDISNNQLNGTVS-EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQL 489
                 +  L  L++SNN+L              +L     S N L  +   + +   +L
Sbjct: 60  --IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNL 516
           EEL L    L   F       + +   
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRER 144

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 21/205 (10%)

Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
            L   +   L   N    +  +  +   +  L         +  + +   + L  ++ S+
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71

Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV 380
           N+L                        L   +    +         L+ +          
Sbjct: 72  NQLTDITP----------------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 115

Query: 381 LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSL 440
             I        L +L+      S ++++      + +   L+ +S        L  L++L
Sbjct: 116 NQITDIDPLKNLTNLN-RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTL 174

Query: 441 RYLDISNNQLNGTVSEIHFANLSSL 465
             LDIS+N+++         NL SL
Sbjct: 175 ERLDISSNKVSDISVLAKLTNLESL 199

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 2/148 (1%)

Query: 215 SLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
               L+             +    +L  L + + Q    L    L GL  L  L +  + 
Sbjct: 9   GSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
            +   PD       L  L+LS N    L  + +   S  E   LS N L    +   L+ 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL-VLSGNPLHCSCALRWLQR 126

Query: 335 LSSIQSLDLSFNELEWKIPRSFSRFCNL 362
                   +   +L+       +   N 
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	960
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.74

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7e-38  Score=339.57  Aligned_cols=293  Identities=27%  Similarity=0.448  Sum_probs=227.2

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc--cccceeeCCCC--CceEEEeCCCCCCcCCCccccccccccc--c
Q 035852           30 GCVESEREALLSFKQDLEDPSNRLATWIGDGDCC--KWAGVICDNFT--GHVLELHLGNPWEDDHGHQAKESSALVG--K  103 (960)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c--~w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~g--~  103 (960)
                      -|.++|++||++||+++.||. .+++|..++|||  .|+||+|+..+  +||++|+|++.             .+.|  .
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-------------~l~g~~~   67 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------------NLPKPYP   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------------CCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-------------CCCCCCC
Confidence            499999999999999998874 689997668999  49999998644  48999999986             5665  6


Q ss_pred             cCccccCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852          104 INPALLDFEHLIYLNLSY-NDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG  182 (960)
Q Consensus       104 i~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~  182 (960)
                      +|++++++++|++|+|++ |.++|. +|+.++++++|++|+|++|++.+..+..+.++.+|+++++++|.+...      
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~------  140 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT------  140 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC------
T ss_pred             CChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccccc------
Confidence            889999999999999986 788874 899999999999999999999998888889999999999988865422      


Q ss_pred             cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCC-cEEeCCCCCCCCChhHHhhcC
Q 035852          183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSL-VTLDLSHNQFDNSLIATQLYG  261 (960)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~~~~~l~~  261 (960)
                                             .+..+.+++.|+++++++|.+.+..|..+..+..+ +.+++++|+++ +..+..+..
T Consensus       141 -----------------------~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-~~~~~~~~~  196 (313)
T d1ogqa_         141 -----------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFAN  196 (313)
T ss_dssp             -----------------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGG
T ss_pred             -----------------------CchhhccCcccceeecccccccccccccccccccccccccccccccc-ccccccccc
Confidence                                   24455666667777777777776666666666664 67777777776 556666666


Q ss_pred             CCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852          262 LCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL  341 (960)
Q Consensus       262 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  341 (960)
                      +.. ..++++.+...+.+|..+..+++++.+++++|.+.+.+| .++.+++|+.|++++|+++|.+| ..++++++|++|
T Consensus       197 l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP-~~l~~L~~L~~L  273 (313)
T d1ogqa_         197 LNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSL  273 (313)
T ss_dssp             CCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEE
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCC-hHHhCCCCCCEE
Confidence            544 367777777777777777777788888888777776544 46777778888888888877777 667777888888


Q ss_pred             eCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852          342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ  371 (960)
Q Consensus       342 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  371 (960)
                      +|++|+++|.+|. ++++++|+.+++++|+
T Consensus       274 ~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            8888887777764 4566666666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.3e-34  Score=313.76  Aligned_cols=261  Identities=29%  Similarity=0.523  Sum_probs=239.0

Q ss_pred             CCcccEEecccccccC--CCCCcccCCCcccEEECCC-CccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852          607 TRLTQIINLEDNLLAG--EIPDCWMNWRYLLVLRLDN-NKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE  683 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  683 (960)
                      ...++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|.+|+++++|++|+|++|++.+..|..+..+..|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3467888999988887  5889999999999999986 889999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCC-CeEeecCCcCccccCccccccccchhccCCC
Q 035852          684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL-KILVLAGNNLSGTIPTCISNFTAMATFLGSD  762 (960)
Q Consensus       684 ~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~  762 (960)
                      .+++++|++.+.+|.++. .++.++.+++++|++.|.+|..+..+..+ +.+++++|+++|..|..+.++..        
T Consensus       129 ~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--------  199 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--------  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--------
T ss_pred             ccccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc--------
Confidence            999999999999999887 79999999999999999999999888776 88999999999988877654322        


Q ss_pred             CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852          763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF  842 (960)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  842 (960)
                                                                    ..+++++|.+.|.+|..++.++.++.+++++|.+
T Consensus       200 ----------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         200 ----------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ----------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ----------------------------------------------cccccccccccccccccccccccccccccccccc
Confidence                                                          5789999999999999999999999999999999


Q ss_pred             cccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccccCC
Q 035852          843 SGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKL  922 (960)
Q Consensus       843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~  922 (960)
                      ++.+| .++.+++|+.|||++|+++|.||+.++++++|++|||++|+|+|+||+.+++.+++...+.||+.+||.|++ .
T Consensus       234 ~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~  311 (313)
T d1ogqa_         234 AFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-A  311 (313)
T ss_dssp             CCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-C
T ss_pred             ccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-C
Confidence            99876 689999999999999999999999999999999999999999999999888999999999999999999986 6


Q ss_pred             cC
Q 035852          923 CT  924 (960)
Q Consensus       923 c~  924 (960)
                      |.
T Consensus       312 c~  313 (313)
T d1ogqa_         312 CT  313 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.8e-25  Score=246.38  Aligned_cols=356  Identities=22%  Similarity=0.277  Sum_probs=213.8

Q ss_pred             ecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccC
Q 035852          420 DLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYL  499 (960)
Q Consensus       420 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l  499 (960)
                      .+..+.+++.+.  ...+.+|++|+++++.++. +.  .+..+++|++|++++|+++...+  +..+++|++|++++|.+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l~--gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-cc--ccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccc
Confidence            344555554433  3456677788887777662 32  35566677777777666654321  33344444444444443


Q ss_pred             CCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCC
Q 035852          500 GPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA  579 (960)
Q Consensus       500 ~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  579 (960)
                      ....  .+                         ..+++|+.|+++++.+++..+ ......+.......|.+....+...
T Consensus       101 ~~i~--~l-------------------------~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~  152 (384)
T d2omza2         101 ADIT--PL-------------------------ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSG  152 (384)
T ss_dssp             CCCG--GG-------------------------TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTT
T ss_pred             cccc--cc-------------------------ccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            3221  12                         334444444444444433221 1122233334443333332222111


Q ss_pred             ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCc
Q 035852          580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR  659 (960)
Q Consensus       580 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  659 (960)
                      ..............      ....+...+.........|...  .+..+..+++++.+++++|.+++..|  +..+++|+
T Consensus       153 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~  222 (384)
T d2omza2         153 LTSLQQLSFGNQVT------DLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLD  222 (384)
T ss_dssp             CTTCSEEEEEESCC------CCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             cccccccccccccc------hhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCC
Confidence            11000000000000      0011122333333444444332  33456667788888888888876544  45567888


Q ss_pred             EEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCC
Q 035852          660 SLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN  739 (960)
Q Consensus       660 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  739 (960)
                      +|++++|+++. + +.+..+++|+.|++++|++++..|  +. .+++|++|++++|++++..+  +..++.++.+++++|
T Consensus       223 ~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n  295 (384)
T d2omza2         223 ELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  295 (384)
T ss_dssp             EEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             EEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--cc-ccccCCEeeccCcccCCCCc--ccccccccccccccc
Confidence            88888888873 2 357778888888888888875333  33 57888888888888875433  667788888888888


Q ss_pred             cCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccc
Q 035852          740 NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFS  819 (960)
Q Consensus       740 ~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  819 (960)
                      .+++. + .+.                                                     .++.++.|++++|+++
T Consensus       296 ~l~~~-~-~~~-----------------------------------------------------~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         296 QLEDI-S-PIS-----------------------------------------------------NLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             CCSCC-G-GGG-----------------------------------------------------GCTTCSEEECCSSCCS
T ss_pred             ccccc-c-ccc-----------------------------------------------------hhcccCeEECCCCCCC
Confidence            77641 1 111                                                     2334589999999999


Q ss_pred             ccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852          820 GEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN  888 (960)
Q Consensus       820 g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N  888 (960)
                      +. + .+..+++|+.|+|++|++++ +| .++++++|+.||+++|++++.+|  +.++++|+.|++++|
T Consensus       321 ~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         321 DI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            64 3 38899999999999999985 55 69999999999999999998766  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.6e-23  Score=233.04  Aligned_cols=235  Identities=23%  Similarity=0.318  Sum_probs=140.7

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852          109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS  188 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~  188 (960)
                      ..+.+|++|+++++.++.  + +.++.+++|++|++++|++++..|  ++++++|++|++++|++.+++     .+.+++
T Consensus        41 ~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~-----~l~~l~  110 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-----PLANLT  110 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-----GGTTCT
T ss_pred             HHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc-----cccccc
Confidence            456788999999988875  3 457788999999999998876533  888999999999998876543     367788


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL  268 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  268 (960)
                      +|+.|+++++.+++...    ......+.......+.+........................      ..+.........
T Consensus       111 ~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  180 (384)
T d2omza2         111 NLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL------KPLANLTTLERL  180 (384)
T ss_dssp             TCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC------GGGTTCTTCCEE
T ss_pred             ccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccchh------hhhccccccccc
Confidence            88888888887776432    23445566666666655544432222222222222222111      223334444444


Q ss_pred             eccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852          269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL  348 (960)
Q Consensus       269 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l  348 (960)
                      ....|...  ....+..+++++.+++++|.+++..|  +...++|+.|++++|.++ .++  .+..+++|++|++++|.+
T Consensus       181 ~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l  253 (384)
T d2omza2         181 DISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQI  253 (384)
T ss_dssp             ECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCC
T ss_pred             cccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc--hhhcccccchhccccCcc
Confidence            44444433  23445566666666666666665433  344566666666666665 232  355666666666666666


Q ss_pred             CcccccccccCCCCCEEEcCCccc
Q 035852          349 EWKIPRSFSRFCNLRSISLSGIQL  372 (960)
Q Consensus       349 ~~~~p~~l~~l~~L~~L~L~~n~l  372 (960)
                      ++..  .+..+++|++|+++++++
T Consensus       254 ~~~~--~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         254 SNLA--PLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             CCCG--GGTTCTTCSEEECCSSCC
T ss_pred             CCCC--cccccccCCEeeccCccc
Confidence            5432  245555554444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.8e-23  Score=221.88  Aligned_cols=232  Identities=21%  Similarity=0.288  Sum_probs=164.2

Q ss_pred             ccCccccCCCCCCEEeCCCCCCCCCCCc-cccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCc
Q 035852          103 KINPALLDFEHLIYLNLSYNDFKGIQIP-RFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDL  181 (960)
Q Consensus       103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~  181 (960)
                      ++|+.+.  +.+++|+|++|.++.  +| ..+.++++|++|++++|.+....|..|.++++|++|++++|+++.++..  
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--   97 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--   97 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--
T ss_pred             ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--
Confidence            4566553  689999999999986  55 4789999999999999999988888899999999999999987755432  


Q ss_pred             ccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC-ChhHHhhc
Q 035852          182 GWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-SLIATQLY  260 (960)
Q Consensus       182 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~  260 (960)
                                                    ....++.|++.+|.+.+..+..+.....++.++...|.... ...+..+.
T Consensus        98 ------------------------------~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~  147 (305)
T d1xkua_          98 ------------------------------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ  147 (305)
T ss_dssp             ------------------------------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred             ------------------------------hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc
Confidence                                          12344555555555555555555556666666666654321 12234566


Q ss_pred             CCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCE
Q 035852          261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS  340 (960)
Q Consensus       261 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~  340 (960)
                      .+++|+++++++|.+. .+|..+  +++|++|++++|..++..+..+.+++.+++|++++|.+.+..+ ..+.++++|++
T Consensus       148 ~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~-~~~~~l~~L~~  223 (305)
T d1xkua_         148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRE  223 (305)
T ss_dssp             GCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCE
T ss_pred             cccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc-cccccccccee
Confidence            6777777777777766 344432  5677788888777777777777777778888888777774333 66777788888


Q ss_pred             EeCCCCCCCcccccccccCCCCCEEEcCCcccCCc
Q 035852          341 LDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQ  375 (960)
Q Consensus       341 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  375 (960)
                      |+|++|+++ .+|.++..+++|++|++++|+++..
T Consensus       224 L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             eeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            888888776 5577777777777777777766543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.5e-22  Score=217.14  Aligned_cols=264  Identities=17%  Similarity=0.247  Sum_probs=127.0

Q ss_pred             CCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852          561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD  640 (960)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  640 (960)
                      .+.++.+++.++...+..++++++|++++|+++...+    ..+.+++.|+.|++++|.+....|..|.+++.|++|+++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcCh----hHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            5556666666664433334555555555555443111    123344555555555555554444455555555555555


Q ss_pred             CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc--ccCchHHhhcCcccceeeecccccc
Q 035852          641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS--GNVPAWIGERFPRMIILILRSNKFH  718 (960)
Q Consensus       641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--g~ip~~~~~~l~~L~~L~L~~N~l~  718 (960)
                      +|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|...  +..+..+. .+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc-cccccCccccccCCcc
Confidence            55554 333322  234555555555554433333444444445555444322  11122222 3444555555555444


Q ss_pred             ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccc
Q 035852          719 GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKT  798 (960)
Q Consensus       719 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (960)
                      . +|..+  +++|+.|++++|..++..|..+..++.                                            
T Consensus       164 ~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~--------------------------------------------  196 (305)
T d1xkua_         164 T-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNN--------------------------------------------  196 (305)
T ss_dssp             S-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTT--------------------------------------------
T ss_pred             c-cCccc--CCccCEEECCCCcCCCCChhHhhcccc--------------------------------------------
Confidence            2 22221  344555555555544444433332222                                            


Q ss_pred             hhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC------
Q 035852          799 LTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK------  872 (960)
Q Consensus       799 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~------  872 (960)
                               ++.|++++|++++..|..+.++++|++|+|++|+|+ .||+.|+++++|+.|+|++|+++ .|+.      
T Consensus       197 ---------l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~  265 (305)
T d1xkua_         197 ---------LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPP  265 (305)
T ss_dssp             ---------CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCS
T ss_pred             ---------ccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCc
Confidence                     255566666666555555555666666666666655 45555666666666666666655 2221      


Q ss_pred             -CCCCCCCCCEEEcccCcc
Q 035852          873 -NTVNLVFLSHFNISYNNL  890 (960)
Q Consensus       873 -~l~~l~~L~~l~ls~N~l  890 (960)
                       ....+..|+.|++++|++
T Consensus       266 ~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSS
T ss_pred             chhcccCCCCEEECCCCcC
Confidence             123345555666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.2e-23  Score=216.56  Aligned_cols=226  Identities=19%  Similarity=0.154  Sum_probs=170.4

Q ss_pred             EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCC-Cc
Q 035852          613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE-NE  691 (960)
Q Consensus       613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~  691 (960)
                      ++.+++.++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|++.+..+..+..++.++.++... |.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            455555555 4565543  5678888888888766566788888888888888888877777777788888877654 44


Q ss_pred             ccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCC
Q 035852          692 FSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPS  771 (960)
Q Consensus       692 l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~  771 (960)
                      ++ .++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..+..++.                 
T Consensus        93 ~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-----------------  154 (284)
T d1ozna_          93 LR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-----------------  154 (284)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred             cc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc-----------------
Confidence            44 454443447788888888888887777777777888888888888887554544444333                 


Q ss_pred             CCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhc
Q 035852          772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIG  851 (960)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~  851 (960)
                                                          |+.|++++|++++..|..+.++++|+.+++++|++++..|..|+
T Consensus       155 ------------------------------------L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         155 ------------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             ------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ------------------------------------hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhh
Confidence                                                37888888888877777888888888888888888888888888


Q ss_pred             cCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852          852 AMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP  895 (960)
Q Consensus       852 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP  895 (960)
                      .+++|+.||+++|++++..|..++++.+|++|++++|++.+.-+
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            88888888888888888777788888888888888888876543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-23  Score=218.92  Aligned_cols=232  Identities=20%  Similarity=0.239  Sum_probs=123.8

Q ss_pred             ccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECC-CCeecccCCcCCcCCCCCcEEecC
Q 035852          610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLR-NNNLSGTLPVSLGNCTELETIDIG  688 (960)
Q Consensus       610 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~Ls  688 (960)
                      ++.|+|++|++++..+..|.++++|++|++++|++.+..+..+..+..++.+... .|.++...|..|.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            3444444444444444455555556666666555555555555555555555543 334444445555556666666666


Q ss_pred             CCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccccc
Q 035852          689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQ  768 (960)
Q Consensus       689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~  768 (960)
                      +|.+.+ ++...+...++|+.+++++|++++..+..+..+++|+.|++++|++++..|..+.+++.|             
T Consensus       114 ~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-------------  179 (284)
T d1ozna_         114 RCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-------------  179 (284)
T ss_dssp             TSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-------------
T ss_pred             Cccccc-ccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-------------
Confidence            665543 222222245556666666666655545555556666666666666654444444333322             


Q ss_pred             CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCch
Q 035852          769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPE  848 (960)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~  848 (960)
                                                              +.+++++|++++..|..|+.+++|+.||+++|.+++..|.
T Consensus       180 ----------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         180 ----------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             ----------------------------------------chhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence                                                    5566666666666666666666666666666666666666


Q ss_pred             hhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852          849 NIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD  896 (960)
Q Consensus       849 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~  896 (960)
                      .|+.+++|+.|+|++|.+.+.-+.. .-...++.+....+++....|.
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             ccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            6666666666666666665543211 0011233444455555555553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.7e-22  Score=205.76  Aligned_cols=198  Identities=22%  Similarity=0.231  Sum_probs=125.0

Q ss_pred             cccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeee
Q 035852          633 YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILIL  712 (960)
Q Consensus       633 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L  712 (960)
                      .+.+.+.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++ .+|..  ..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccccccc
Confidence            3444455555554 3444432  34555555555555444445555556666666666555 34432  14566666666


Q ss_pred             ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852          713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI  792 (960)
Q Consensus       713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (960)
                      ++|++++ .+..+..+++|+.|++++|.+.+..+..+..+                                        
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l----------------------------------------  123 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL----------------------------------------  123 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC----------------------------------------
T ss_pred             ccccccc-cccccccccccccccccccccceeeccccccc----------------------------------------
Confidence            6666653 34456667777777777777654333332222                                        


Q ss_pred             EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852          793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK  872 (960)
Q Consensus       793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~  872 (960)
                                   .+++.|++++|++++..|..+..++.|+.|++++|++++..|+.|+.+++|+.|||++|+|+ .||+
T Consensus       124 -------------~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         124 -------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             -------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             -------------cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh
Confidence                         23367777777777655666677778888888888888777777788888888888888887 7888


Q ss_pred             CCCCCCCCCEEEcccCcce
Q 035852          873 NTVNLVFLSHFNISYNNLS  891 (960)
Q Consensus       873 ~l~~l~~L~~l~ls~N~l~  891 (960)
                      ++..+++|+.|+|++|++.
T Consensus       190 ~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBC
T ss_pred             hHCCCCCCCEEEecCCCCC
Confidence            8888888888888888664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=203.37  Aligned_cols=201  Identities=22%  Similarity=0.230  Sum_probs=170.3

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      ...+..++.++++++ .+|+.+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +| .++.+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            445566788888888 4676664  579999999999997666789999999999999999984 44 357899999999


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT  766 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~  766 (960)
                      +++|++++ +|..+. .+++|+.|++++|++.+..+..+..+.+++.|++++|.+++..|..+..++             
T Consensus        84 Ls~N~l~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-------------  148 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-------------  148 (266)
T ss_dssp             CCSSCCSS-CCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------
T ss_pred             cccccccc-cccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccc-------------
Confidence            99999984 555554 799999999999999988888889999999999999999855444444333             


Q ss_pred             ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852          767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI  846 (960)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  846 (960)
                                                              .++.+++++|++++..|..++.+++|+.|||++|+|+ .|
T Consensus       149 ----------------------------------------~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         149 ----------------------------------------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             ----------------------------------------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ----------------------------------------cchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                                                    3489999999999888888999999999999999999 89


Q ss_pred             chhhccCCCCCEEECcCCcccc
Q 035852          847 PENIGAMALLESLDFSSNRLEG  868 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g  868 (960)
                      |+.+..+++|+.|+|++|.+..
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhHCCCCCCCEEEecCCCCCC
Confidence            9999999999999999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.8e-16  Score=172.87  Aligned_cols=100  Identities=30%  Similarity=0.327  Sum_probs=46.7

Q ss_pred             ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852          628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM  707 (960)
Q Consensus       628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  707 (960)
                      +..++.++.+++++|.... ++..   ....+.+...++.+. .+| .+..++.|+.+++++|... .+|.    ...++
T Consensus       158 l~~l~~l~~L~l~~n~~~~-~~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l  226 (353)
T d1jl5a_         158 LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSL  226 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTC
T ss_pred             ccccccceecccccccccc-cccc---ccccccccccccccc-ccc-ccccccccccccccccccc-cccc----ccccc
Confidence            3344555555555555442 2211   122344444444443 222 2445566666666666554 3332    23455


Q ss_pred             ceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852          708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      ..+.+.++++... +.   ..+.+...++..+.+.
T Consensus       227 ~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         227 EALNVRDNYLTDL-PE---LPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             ccccccccccccc-cc---cccccccccccccccc
Confidence            5566666655422 11   1334555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.4e-15  Score=165.83  Aligned_cols=138  Identities=22%  Similarity=0.251  Sum_probs=76.2

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccc
Q 035852          112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLE  191 (960)
Q Consensus       112 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~  191 (960)
                      .++++|||+++.++.  +|+.   .++|++|+|++|+++ .+|..   +.+|++|++++|.++.++              
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~--------------   94 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS--------------   94 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC--------------
T ss_pred             cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh--------------
Confidence            468889999998874  6753   467888888888877 45654   346777777777655332              


Q ss_pred             eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852          192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS  271 (960)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls  271 (960)
                                   .++      +.|++|++++|.+...+.  ++.+++|++|+++++.+. . .+   .....+..+.+.
T Consensus        95 -------------~lp------~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~-~-~~---~~~~~l~~l~~~  148 (353)
T d1jl5a_          95 -------------DLP------PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLK-K-LP---DLPPSLEFIAAG  148 (353)
T ss_dssp             -------------SCC------TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS-C-CC---CCCTTCCEEECC
T ss_pred             -------------hhc------cccccccccccccccccc--hhhhccceeecccccccc-c-cc---cccccccchhhc
Confidence                         111      234455555554444332  344555555555555543 1 11   122344455554


Q ss_pred             CcccCCCCcccccCCCCCCEEeCCCCcCC
Q 035852          272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFS  300 (960)
Q Consensus       272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  300 (960)
                      .+...  .+..+..++.++.++++.|...
T Consensus       149 ~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         149 NNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccc--ccccccccccceeccccccccc
Confidence            44332  1233445555555665555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-19  Score=205.89  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=95.7

Q ss_pred             ccCcEEEcccccccccccchhhccc-CCCCcccEEecccccccCCCC----CcccCCCcccEEECCCCccccC----CCc
Q 035852          580 SNVMVLDLSKNKLSGSILHFVCHET-NGTRLTQIINLEDNLLAGEIP----DCWMNWRYLLVLRLDNNKFTGK----LPT  650 (960)
Q Consensus       580 ~~L~~L~ls~n~l~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~----~p~  650 (960)
                      +.++.+++++|.+.......++..+ .....|+.+++++|.++....    ..+...++|++|+|++|++++.    +++
T Consensus       283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence            4556666666665433222222221 123567777777777664322    2334456788899998888642    333


Q ss_pred             CcC-CCCCCcEEECCCCeeccc----CCcCCcCCCCCcEEecCCCcccccCchHHh----hcCcccceeeeccccccccC
Q 035852          651 SLG-ALSLLRSLHLRNNNLSGT----LPVSLGNCTELETIDIGENEFSGNVPAWIG----ERFPRMIILILRSNKFHGVF  721 (960)
Q Consensus       651 ~l~-~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~----~~l~~L~~L~L~~N~l~~~~  721 (960)
                      .+. ..+.|++|+|++|+++..    ++..+..+++|++|+|++|+++......+.    ...+.|+.|++.+|.+....
T Consensus       363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            333 356789999999988742    455667778899999999988754333332    23347899999999887554


Q ss_pred             chhh----cCCCCCCeE
Q 035852          722 PLEL----CHLAFLKIL  734 (960)
Q Consensus       722 p~~l----~~l~~L~~L  734 (960)
                      ...+    ...++|++|
T Consensus       443 ~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         443 EDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHhCCCCEEe
Confidence            4433    344666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.6e-17  Score=166.25  Aligned_cols=203  Identities=21%  Similarity=0.284  Sum_probs=145.2

Q ss_pred             EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852          613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF  692 (960)
Q Consensus       613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (960)
                      ++++.+++++.+  .+..+.+|+.|++.+|.++. + +.+..+++|++|++++|++++..|  +..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            345555555443  34556778888888888773 4 357778888888888888875433  77788888888888877


Q ss_pred             cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCC
Q 035852          693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD  772 (960)
Q Consensus       693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~  772 (960)
                      + .++. +. .+++|+.++++++...+..  .+...+.++.++++++.+....+  +.                      
T Consensus        98 ~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~----------------------  148 (227)
T d1h6ua2          98 K-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LA----------------------  148 (227)
T ss_dssp             S-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GG----------------------
T ss_pred             c-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hc----------------------
Confidence            6 4553 43 5778888888877776543  24556777778777776643221  11                      


Q ss_pred             CCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhcc
Q 035852          773 FSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA  852 (960)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~  852 (960)
                                                     ..+.|+.|++++|++++..  .++++++|+.|||++|++++ +| .+++
T Consensus       149 -------------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~  193 (227)
T d1h6ua2         149 -------------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLAS  193 (227)
T ss_dssp             -------------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             -------------------------------cccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcC
Confidence                                           1234588999999887433  38889999999999999985 54 3889


Q ss_pred             CCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      +++|+.|+|++|++++ +|. +++++.|++|++++
T Consensus       194 l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             CCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            9999999999999985 442 78899999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.5e-19  Score=200.86  Aligned_cols=388  Identities=20%  Similarity=0.175  Sum_probs=184.9

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccC----CchhhhcCCCCCcEEeCCCCCCCCCccCCcc-ccc-C
Q 035852          113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVG----MIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLY-D  186 (960)
Q Consensus       113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~-~l~-~  186 (960)
                      .|++||++++++++..+.+.+..++++|+|+|++|+++.    .++..+..+++|++|||++|.|++.....+. .+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            356666666666654444555556666666666666553    2344556666666666666655422111111 111 2


Q ss_pred             CCccceeecCCCCCCCCC--CCcccccCCCCCCEEEccCCcCCCCCCCCc-----cCCCCCcEEeCCCCCCCCC---hhH
Q 035852          187 LSLLENLDLSGVDLSKVS--NGPLVTNALRSLLVLQLAGCQLSHFPPLSV-----ANFSSLVTLDLSHNQFDNS---LIA  256 (960)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~---~~~  256 (960)
                      ..+|++|++++|++++..  ..+..+..+++|++|++++|.++......+     ...............+...   ...
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            235666666666665431  123345566667777777666543211111     1112233333333332211   111


Q ss_pred             HhhcCCCCCCEEeccCcccCCC----Ccccc-cCCCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEeeeCccccccc
Q 035852          257 TQLYGLCNLVFLDLSDNNFQGP----IPDTI-QNWTSLRHLDLSSNHFSYL----IPEWLNKFSRLEYLSLSSNRLQGRI  327 (960)
Q Consensus       257 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l-~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i  327 (960)
                      ..+.....++.++++++.....    ....+ ..-.....+++..+.+...    ....+...+.++.+++.+|.+....
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            2233445566666655543311    00011 1123444555555544322    1122334555666666665543211


Q ss_pred             ----cHHHHhcCCCCCEEeCCCCCCCcc----cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCC
Q 035852          328 ----SSVLLENLSSIQSLDLSFNELEWK----IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN  399 (960)
Q Consensus       328 ----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  399 (960)
                          ..........++.+++++|.+...    ....+...+.++.+++++|.++......+...+.. ....|+.+++++
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~-~~~~L~~l~l~~  321 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE-PGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS-TTCCCCEEECTT
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccc-cccccccccccc
Confidence                011223345566666666655422    11233445566666666666655444444333221 123456666666


Q ss_pred             CCCCCchhh----hhcCCCCCCEEecCCCcCCCC----Cccccc-CCCCCcEEecCCcccccccc---hhhhcCCCCCcE
Q 035852          400 TTLSGSLTN----QIGKFKVLNSVDLSENSISGQ----VPWSLG-KLSSLRYLDISNNQLNGTVS---EIHFANLSSLTF  467 (960)
Q Consensus       400 n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~L~~n~l~~~i~---~~~~~~l~~L~~  467 (960)
                      +.++.....    .+...++|++|+|++|++++.    ++..+. ..+.|++|++++|+++..-.   ...+..+++|++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            666543222    223445666666666666532    222232 24556666666666653211   012445566666


Q ss_pred             eeccCccccccCCCCC-----cccccceEEecccccCCC
Q 035852          468 FYASRNSLTLKANPNW-----VPVFQLEELDLRSCYLGP  501 (960)
Q Consensus       468 L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~~~l~~  501 (960)
                      |++++|+++......+     .....|+.|++.++.+..
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            6666666653222211     122357777777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.7e-16  Score=159.60  Aligned_cols=189  Identities=25%  Similarity=0.332  Sum_probs=103.0

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCC
Q 035852          108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL  187 (960)
Q Consensus       108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l  187 (960)
                      +.++++|++|++.+|.++.  + +.++.+++|++|++++|++++..|  +.++++|+++++++|.++.+     ..+.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i-----~~l~~l  106 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-----SAIAGL  106 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-----GGGTTC
T ss_pred             HHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc-----cccccc
Confidence            3556778888888887774  4 346778888888888887766443  77777888888777765433     335566


Q ss_pred             CccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852          188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF  267 (960)
Q Consensus       188 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  267 (960)
                      ++|+.++++++...+.    ..+...+.++.+.++.+.+....  .+.++++|++|++++|.+. ..  ..+.++++|++
T Consensus       107 ~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~-~~--~~l~~l~~L~~  177 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVS-DL--TPLANLSKLTT  177 (227)
T ss_dssp             TTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCC-CC--GGGTTCTTCCE
T ss_pred             cccccccccccccccc----chhccccchhhhhchhhhhchhh--hhccccccccccccccccc-cc--hhhccccccee
Confidence            6666666666655442    22334445555555555444332  2344445555555555443 11  12444445555


Q ss_pred             EeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeee
Q 035852          268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS  319 (960)
Q Consensus       268 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  319 (960)
                      |++++|++++ ++ .++++++|++|++++|++++..|  ++++++|+.|+++
T Consensus       178 L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         178 LKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             cccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            5555544442 22 14444444444444444443221  4444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.8e-16  Score=156.04  Aligned_cols=130  Identities=24%  Similarity=0.294  Sum_probs=97.6

Q ss_pred             ccEEecccccccCCCCCcccCCCcccEEECCCCccccCC-CcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecC
Q 035852          610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL-PTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIG  688 (960)
Q Consensus       610 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  688 (960)
                      .+.+++++++++ .+|..+.  +++++|+|++|+|++.+ +..|..+++|+.|+|++|++.+..+..|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            456788888887 5666553  57888888888887544 4566778888888888888887777888888888888888


Q ss_pred             CCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcc
Q 035852          689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG  743 (960)
Q Consensus       689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  743 (960)
                      +|++++ +|...+.++++|++|+|++|+|++..|..|..+++|++|+|++|++.+
T Consensus        87 ~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            888874 444444467888888888888887777777777888888888777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.5e-16  Score=157.36  Aligned_cols=73  Identities=23%  Similarity=0.336  Sum_probs=44.4

Q ss_pred             cEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      +.+++++|++++  +..+..+++|+.+++++|++++ ++ .++++++|+.|||++|+++ .|| .+.++++|++|+|++
T Consensus       137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            556666666553  2245556666666666666664 33 2666667777777777665 344 366667777776653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3.4e-16  Score=154.03  Aligned_cols=176  Identities=18%  Similarity=0.140  Sum_probs=138.0

Q ss_pred             CCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852          561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD  640 (960)
Q Consensus       561 L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  640 (960)
                      .+.++.++++++.+.+..++++++|++++|++++.++.   ..+.++++|+.|++++|.+.+..+..+..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~---~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccc---cccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            34566666666644444456777788888877654432   234568899999999999999999999999999999999


Q ss_pred             CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc
Q 035852          641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV  720 (960)
Q Consensus       641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~  720 (960)
                      +|++++..|.+|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+....+....  ...++.+.+..+.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeC
Confidence            9999988888899999999999999999988888899999999999999999854443222  23567777888888877


Q ss_pred             CchhhcCCCCCCeEeecCCcCccc
Q 035852          721 FPLELCHLAFLKILVLAGNNLSGT  744 (960)
Q Consensus       721 ~p~~l~~l~~L~~L~Ls~N~l~g~  744 (960)
                      .|..   +..++.++++.|.+...
T Consensus       165 ~p~~---l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         165 APSK---VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             SSTT---TTTSBGGGSCTTTCCCC
T ss_pred             CChh---hcCCEeeecCHhhCcCC
Confidence            7765   45577888999888643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-16  Score=161.84  Aligned_cols=220  Identities=15%  Similarity=0.102  Sum_probs=123.1

Q ss_pred             cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCC
Q 035852          611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGE  689 (960)
Q Consensus       611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~  689 (960)
                      +.++.++..++ .+|+.+.  +++++|++++|+++...+..|.++++|++|++++|.+...+| ..|.+++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34555555555 4554432  356666666666664434456666666666666666654333 3455666666666543


Q ss_pred             -CcccccCchHHhhcCcccceeeeccccccccCch-hhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852          690 -NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL-ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI  767 (960)
Q Consensus       690 -N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~  767 (960)
                       |.+....+..+ ..+++|+.+++++|++....+. .+..+..+..+..+++.+...-+..+..                
T Consensus        88 ~n~l~~~~~~~~-~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~----------------  150 (242)
T d1xwdc1          88 ANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG----------------  150 (242)
T ss_dssp             CTTCCEECTTSE-ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT----------------
T ss_pred             cccccccccccc-cccccccccccchhhhccccccccccccccccccccccccccccccccccc----------------
Confidence             44443333333 2556666666666655432221 1222333333333444333111111111                


Q ss_pred             cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccce-eecCcccCcccC
Q 035852          768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRS-LNLSHNFFSGRI  846 (960)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~i  846 (960)
                                                          ....++.|++++|+++ .++.......+++. +++++|+++..-
T Consensus       151 ------------------------------------~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~  193 (242)
T d1xwdc1         151 ------------------------------------LSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELP  193 (242)
T ss_dssp             ------------------------------------SBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCC
T ss_pred             ------------------------------------ccccceeeeccccccc-ccccccccchhhhcccccccccccccc
Confidence                                                1123578999999998 45555555555544 467888888433


Q ss_pred             chhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852          847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY  887 (960)
Q Consensus       847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~  887 (960)
                      +..|.++++|+.|||++|+++...+..+.++..|+++++.+
T Consensus       194 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            44578899999999999999844444677777777666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.5e-16  Score=156.32  Aligned_cols=181  Identities=23%  Similarity=0.330  Sum_probs=143.7

Q ss_pred             EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852          613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF  692 (960)
Q Consensus       613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (960)
                      ..+..+.+++.++.  ..+.+|++|++++|.++.. + .+..+++|++|++++|++++. + .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccc
Confidence            35566666665543  3577899999999999843 3 478899999999999999864 3 367899999999999999


Q ss_pred             cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCC
Q 035852          693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD  772 (960)
Q Consensus       693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~  772 (960)
                      + .+|. +. .+++|+.|++++|.+.. + ..+..++.++.+++++|.+++.  ..+..                     
T Consensus       103 ~-~l~~-l~-~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~---------------------  154 (210)
T d1h6ta2         103 K-DLSS-LK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSR---------------------  154 (210)
T ss_dssp             C-CGGG-GT-TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGG---------------------
T ss_pred             c-cccc-cc-ccccccccccccccccc-c-cccccccccccccccccccccc--ccccc---------------------
Confidence            8 4663 44 68999999999998864 2 3578889999999999988632  12222                     


Q ss_pred             CCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhcc
Q 035852          773 FSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA  852 (960)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~  852 (960)
                                                      +++|+.+++++|++++ ++ .++++++|+.|+|++|+++. +| .+.+
T Consensus       155 --------------------------------l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~  198 (210)
T d1h6ta2         155 --------------------------------LTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAG  198 (210)
T ss_dssp             --------------------------------CTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTT
T ss_pred             --------------------------------cccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcC
Confidence                                            3456899999999995 54 38999999999999999984 66 5999


Q ss_pred             CCCCCEEECcC
Q 035852          853 MALLESLDFSS  863 (960)
Q Consensus       853 l~~L~~L~Ls~  863 (960)
                      +++|+.|+|++
T Consensus       199 l~~L~~L~Ls~  209 (210)
T d1h6ta2         199 LKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEEEEE
T ss_pred             CCCCCEEEccC
Confidence            99999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.4e-16  Score=159.96  Aligned_cols=201  Identities=15%  Similarity=0.106  Sum_probs=135.1

Q ss_pred             cccEEecccccccCCCCCcccCCCcccEEECCCCccccCC-CcCcCCCCCCcEEECCC-CeecccCCcCCcCCCCCcEEe
Q 035852          609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL-PTSLGALSLLRSLHLRN-NNLSGTLPVSLGNCTELETID  686 (960)
Q Consensus       609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~  686 (960)
                      .++.|++++|+++...+..|.++++|++|++++|.+...+ +..|..++.++++.+.. |++....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3455555555555444556777888888888888776544 34577788888887654 567767777788888888888


Q ss_pred             cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCC-CCCeEeecCCcCccccCccccccccchhccCCCCcc
Q 035852          687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA-FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIY  765 (960)
Q Consensus       687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~  765 (960)
                      +++|++...-+......+..+..+...++++....+..+..++ .++.|++++|+++ .++....+...+          
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l----------  178 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQL----------  178 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCE----------
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhh----------
Confidence            8888887332222222445555666677777765556666554 7888999999887 344333222222          


Q ss_pred             cccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCch-hhhhhcccceeecCcccCcc
Q 035852          766 TIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPA-EITVLRELRSLNLSHNFFSG  844 (960)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g  844 (960)
                                                                .+.+++++|+++ .||. .|.++++|+.|||++|+++.
T Consensus       179 ------------------------------------------~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         179 ------------------------------------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             ------------------------------------------EEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             ------------------------------------------hccccccccccc-cccHHHhcCCCCCCEEECCCCcCCc
Confidence                                                      145567888898 5654 57889999999999999995


Q ss_pred             cCchhhccCCCCCEEECcC
Q 035852          845 RIPENIGAMALLESLDFSS  863 (960)
Q Consensus       845 ~iP~~l~~l~~L~~L~Ls~  863 (960)
                      ..+..|.+++.|+.|++++
T Consensus       216 l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         216 LPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCSSSCTTCCEEESSSEES
T ss_pred             cCHHHHcCCcccccCcCCC
Confidence            4444567777777666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6.5e-15  Score=145.61  Aligned_cols=163  Identities=28%  Similarity=0.390  Sum_probs=102.3

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852          109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS  188 (960)
Q Consensus       109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~  188 (960)
                      .++.++++|++++|.++..   +.++.+++|++|++++|++++..|  ++++++|++|++++|.+..++     .+.+  
T Consensus        37 ~~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~-----~l~~--  104 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-----PLAN--  104 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-----GGTT--
T ss_pred             HHhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc-----cccc--
Confidence            3466777888888777642   346677788888888877766433  777777777777777654322     2334  


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL  268 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  268 (960)
                                              +++|+.|++++|.+....  .+.++++|++|++++|.+. . + +.+..+++|++|
T Consensus       105 ------------------------l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~-~-~-~~l~~~~~L~~L  155 (199)
T d2omxa2         105 ------------------------LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTIS-D-I-SALSGLTSLQQL  155 (199)
T ss_dssp             ------------------------CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-C-C-GGGTTCTTCSEE
T ss_pred             ------------------------cccccccccccccccccc--ccchhhhhHHhhhhhhhhc-c-c-cccccccccccc
Confidence                                    444555555544444332  3555666666666666664 2 2 246666777777


Q ss_pred             eccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEE
Q 035852          269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL  316 (960)
Q Consensus       269 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  316 (960)
                      ++.+|++++. + .++++++|++|++++|++++. + .++++++|+.|
T Consensus       156 ~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             ccccccccCC-c-cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            7777776642 2 366777777777777777653 2 46677777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=7.6e-15  Score=145.14  Aligned_cols=140  Identities=31%  Similarity=0.452  Sum_probs=108.9

Q ss_pred             CCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCC
Q 035852          186 DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNL  265 (960)
Q Consensus       186 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  265 (960)
                      .+++|++|++++|+++++.    .+.++++|++|++++|.+....  .++++++|++|+++++.+. .  ...+..+++|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~-~--~~~~~~l~~L  130 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQIT-D--IDPLKNLTNL  130 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-C--CGGGTTCTTC
T ss_pred             cCCCcCcCccccccccCcc----cccCCccccccccccccccccc--ccccccccccccccccccc-c--ccccchhhhh
Confidence            3444444444444444421    2567777888888888776654  4889999999999999886 3  2457889999


Q ss_pred             CEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852          266 VFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL  341 (960)
Q Consensus       266 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  341 (960)
                      +.|++++|++.. + +.+..+++|++|++++|++++..  .++++++|++|++++|+++ .++  .++.+++|++|
T Consensus       131 ~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         131 NRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS-DIS--VLAKLTNLESL  199 (199)
T ss_dssp             SEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCSEE
T ss_pred             HHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC-CCc--cccCCCCCCcC
Confidence            999999999874 3 46889999999999999998753  4899999999999999998 454  47899999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.3e-15  Score=155.81  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=43.3

Q ss_pred             hcCCCCCEEeCCCCC-CCcccccccccCCCCCEEEcCCc-ccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhh
Q 035852          333 ENLSSIQSLDLSFNE-LEWKIPRSFSRFCNLRSISLSGI-QLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQI  410 (960)
Q Consensus       333 ~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l  410 (960)
                      .++++|++|++++|. +++.....+..+++|++|++++| .+++..+..+..      .++|+.|+++++.-.+.+....
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~------~~~L~~L~l~~~~~d~~l~~l~  245 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE------IPTLKTLQVFGIVPDGTLQLLK  245 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG------CTTCCEEECTTSSCTTCHHHHH
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc------CCCCCEEeeeCCCCHHHHHHHH
Confidence            445555555555542 44444444555555555555553 343333322211      2345666666552222233323


Q ss_pred             cCCCCCCEEecCCCcCCCCCcccccC
Q 035852          411 GKFKVLNSVDLSENSISGQVPWSLGK  436 (960)
Q Consensus       411 ~~l~~L~~L~L~~n~l~~~~p~~l~~  436 (960)
                      ..+++|+   +..+.+++..++.++.
T Consensus       246 ~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         246 EALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             HHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HhCcccc---ccCccCCCCCCCccCc
Confidence            3344443   4555565554444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.9e-15  Score=154.75  Aligned_cols=217  Identities=21%  Similarity=0.189  Sum_probs=117.8

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCC-CCCCccCCcccccCCC
Q 035852          110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNY-LGGLYVEDLGWLYDLS  188 (960)
Q Consensus       110 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~l~  188 (960)
                      ....|++||++++.++...+...+..+++|++|+|++|.+.+..+..++++++|++|++++|. +++   ..+       
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd---~~l-------  113 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---FAL-------  113 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---HHH-------
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc---ccc-------
Confidence            344566666666665543344555666666666666666665566666666666666666542 211   111       


Q ss_pred             ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCc-CCCC-CCCCc-cCCCCCcEEeCCCC--CCCCChhHHhhcCCC
Q 035852          189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQ-LSHF-PPLSV-ANFSSLVTLDLSHN--QFDNSLIATQLYGLC  263 (960)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l-~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~  263 (960)
                                        ......+++|++|++++|. ++.. ....+ ...++|+.|+++++  .+++..+.....+++
T Consensus       114 ------------------~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~  175 (284)
T d2astb2         114 ------------------QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  175 (284)
T ss_dssp             ------------------HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             ------------------chhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccc
Confidence                              1112234444444444432 2111 00111 12356666666653  344233444455677


Q ss_pred             CCCEEeccCcc-cCCCCcccccCCCCCCEEeCCCC-cCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852          264 NLVFLDLSDNN-FQGPIPDTIQNWTSLRHLDLSSN-HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL  341 (960)
Q Consensus       264 ~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  341 (960)
                      +|++|++++|. +++.....+.++++|++|++++| .+++.....++++++|+.|+++++ ++...-......+++|+  
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~--  252 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ--  252 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE--
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc--
Confidence            78888887753 55556666777778888888774 466555556777778888888776 33222213334555554  


Q ss_pred             eCCCCCCCccccccccc
Q 035852          342 DLSFNELEWKIPRSFSR  358 (960)
Q Consensus       342 ~Ls~n~l~~~~p~~l~~  358 (960)
                       +..+.++...++.++.
T Consensus       253 -i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         253 -INCSHFTTIARPTIGN  268 (284)
T ss_dssp             -ESCCCSCCTTCSSCSS
T ss_pred             -ccCccCCCCCCCccCc
Confidence             3555555544444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.2e-14  Score=157.57  Aligned_cols=142  Identities=20%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             CCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEeeeCccccccc----cHHHHhcCCCCCEEeCCCCCCCcc----cc
Q 035852          286 WTSLRHLDLSSNHFSYL----IPEWLNKFSRLEYLSLSSNRLQGRI----SSVLLENLSSIQSLDLSFNELEWK----IP  353 (960)
Q Consensus       286 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i----~~~~l~~l~~L~~L~Ls~n~l~~~----~p  353 (960)
                      .+.|+.+++++|.++..    +...+...+.|+.|++++|.+....    ....+..+++|++|++++|.+...    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            44556666665555422    2223445556666666666654221    012234556666666666665422    23


Q ss_pred             cccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCch----hhhhc-CCCCCCEEecCCCcCC
Q 035852          354 RSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL----TNQIG-KFKVLNSVDLSENSIS  427 (960)
Q Consensus       354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~-~l~~L~~L~L~~n~l~  427 (960)
                      ..+..+++|++|++++|.++......+...+.......|++|++++|.++...    ...+. +++.|+.|++++|.+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            34556666777777777666666666655555444455566666666554321    12221 3444555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=5.4e-14  Score=152.27  Aligned_cols=216  Identities=19%  Similarity=0.219  Sum_probs=114.1

Q ss_pred             ccCCCCCcEEeCCCCCCCC---------ChhHHhhcCCCCCCEEeccCcccCCC----CcccccCCCCCCEEeCCCCcCC
Q 035852          234 VANFSSLVTLDLSHNQFDN---------SLIATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFS  300 (960)
Q Consensus       234 l~~l~~L~~L~Ls~n~l~~---------~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  300 (960)
                      +...++|+.|+++++....         ..+...+..+++|++|++++|.+...    +...+..+++|++|++++|.+.
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            3444555566655543321         01234455667777777777776644    2333445677777777777654


Q ss_pred             Ccchhh-------------hcCCCCCCEEeeeCcccccccc---HHHHhcCCCCCEEeCCCCCCCcc-----cccccccC
Q 035852          301 YLIPEW-------------LNKFSRLEYLSLSSNRLQGRIS---SVLLENLSSIQSLDLSFNELEWK-----IPRSFSRF  359 (960)
Q Consensus       301 ~~~p~~-------------l~~l~~L~~L~L~~n~l~~~i~---~~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l  359 (960)
                      ......             ....+.|+.+.+++|.+.....   ...+...+.|++|++++|.+...     +...+..+
T Consensus       135 ~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~  214 (344)
T d2ca6a1         135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  214 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             ccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch
Confidence            221111             1345677777777776653211   12345567777777777776532     23345566


Q ss_pred             CCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhh----hcC--CCCCCEEecCCCcCCCC----
Q 035852          360 CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ----IGK--FKVLNSVDLSENSISGQ----  429 (960)
Q Consensus       360 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~--l~~L~~L~L~~n~l~~~----  429 (960)
                      ++|++|++++|.++......+...+..+  +.|++|++++|.+++.....    +..  .+.|++|++++|.++..    
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~--~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSW--PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGC--TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             hhhccccccccccccccccccccccccc--ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            7777777777766655555554444332  33566666666655432222    221  24455555555555432    


Q ss_pred             Cccccc-CCCCCcEEecCCcccc
Q 035852          430 VPWSLG-KLSSLRYLDISNNQLN  451 (960)
Q Consensus       430 ~p~~l~-~l~~L~~L~L~~n~l~  451 (960)
                      +...+. ++++|++|++++|++.
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHccCCCCCEEECCCCcCC
Confidence            111221 3445555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=122.69  Aligned_cols=108  Identities=20%  Similarity=0.163  Sum_probs=48.7

Q ss_pred             CCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEE
Q 035852          213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL  292 (960)
Q Consensus       213 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  292 (960)
                      +.++++|+|++|+|+.+. ..+..+++|++|++++|.++ . + +.+..+++|++|++++|+++...+..+..+++|++|
T Consensus        17 ~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~-~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCC-c-c-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            334444444444444442 23344455555555555553 1 1 224444555555555555543333333445555555


Q ss_pred             eCCCCcCCCcch-hhhcCCCCCCEEeeeCcccc
Q 035852          293 DLSSNHFSYLIP-EWLNKFSRLEYLSLSSNRLQ  324 (960)
Q Consensus       293 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  324 (960)
                      ++++|+++.... ..+..+++|++|++++|.++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            555555443211 23444445555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=3.5e-12  Score=114.29  Aligned_cols=101  Identities=30%  Similarity=0.349  Sum_probs=48.8

Q ss_pred             EEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCC
Q 035852          218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN  297 (960)
Q Consensus       218 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  297 (960)
                      +|+|++|+++...  .+.++++|++|++++|.++  .+|+.++.+++|++|++++|.++. +| .++.+++|++|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            3444444444332  2444555555555555553  234445555555555555555542 22 2455555555555555


Q ss_pred             cCCCcc-hhhhcCCCCCCEEeeeCcccc
Q 035852          298 HFSYLI-PEWLNKFSRLEYLSLSSNRLQ  324 (960)
Q Consensus       298 ~l~~~~-p~~l~~l~~L~~L~L~~n~l~  324 (960)
                      +++... ...+..+++|+.|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554432 133455555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1e-12  Score=124.08  Aligned_cols=109  Identities=18%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852          630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII  709 (960)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  709 (960)
                      ++.++++|+|++|+|+ .+|..+..+++|+.|+|++|+++. ++ .+..+++|++|++++|+++ .+|..++..+++|+.
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc-CCCcccccccccccc
Confidence            3444555555555554 233333444555555555555542 22 3445555555555555554 233333324555555


Q ss_pred             eeeccccccccCc-hhhcCCCCCCeEeecCCcCc
Q 035852          710 LILRSNKFHGVFP-LELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       710 L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      |++++|+++.... ..+..+++|+.|++++|+++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc
Confidence            5555555542211 23444555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.7e-12  Score=115.02  Aligned_cols=100  Identities=23%  Similarity=0.360  Sum_probs=49.3

Q ss_pred             EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCc
Q 035852          612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENE  691 (960)
Q Consensus       612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (960)
                      .|++++|+++ .++ .+..+++|++|++++|+++ .+|+.++.+++|+.|++++|++++ +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            3445555554 222 2455555555555555554 345455555555555555555552 22 25555555555555555


Q ss_pred             ccccCch--HHhhcCcccceeeecccccc
Q 035852          692 FSGNVPA--WIGERFPRMIILILRSNKFH  718 (960)
Q Consensus       692 l~g~ip~--~~~~~l~~L~~L~L~~N~l~  718 (960)
                      ++ .+|.  .+. .+++|+.|++++|+++
T Consensus        77 i~-~~~~~~~l~-~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQ-QSAAIQPLV-SCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CC-SSSTTGGGG-GCTTCCEEECTTSGGG
T ss_pred             cC-CCCCchhhc-CCCCCCEEECCCCcCC
Confidence            54 2221  222 3445555555555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1.5e-12  Score=127.52  Aligned_cols=131  Identities=24%  Similarity=0.287  Sum_probs=90.1

Q ss_pred             cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCC
Q 035852          695 NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFS  774 (960)
Q Consensus       695 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~  774 (960)
                      .+|..+. .+++|+.|+|++|+++. ++ .+..+++|+.|++++|+++ .+|....                        
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~------------------------   90 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA------------------------   90 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHH------------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccc------------------------
Confidence            3455555 57777777777777763 33 4667788888888888775 3332211                        


Q ss_pred             CCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc-hhhccC
Q 035852          775 FPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP-ENIGAM  853 (960)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l  853 (960)
                                                   .++.|+.|++++|+++. + +.+..+++|+.|+|++|+++..-. +.++.+
T Consensus        91 -----------------------------~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l  139 (198)
T d1m9la_          91 -----------------------------VADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL  139 (198)
T ss_dssp             -----------------------------HHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTT
T ss_pred             -----------------------------ccccccccccccccccc-c-ccccccccccccccccchhccccccccccCC
Confidence                                         12345888888888884 4 358888889999999998875321 467888


Q ss_pred             CCCCEEECcCCcccccCCCC----------CCCCCCCCEEE
Q 035852          854 ALLESLDFSSNRLEGEIPKN----------TVNLVFLSHFN  884 (960)
Q Consensus       854 ~~L~~L~Ls~N~l~g~iP~~----------l~~l~~L~~l~  884 (960)
                      ++|+.|+|++|++....+..          +..+++|+.||
T Consensus       140 ~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88999999999887666554          34566777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.2e-11  Score=112.00  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=76.2

Q ss_pred             CCcccEEecccccccCCCCCcccCCCcccEEECCCC-ccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852          607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNN-KFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI  685 (960)
Q Consensus       607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (960)
                      +...+.++++++.+. .+|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++...|..|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334455666666665 35666777778888888655 4665555667778888888888888876667777888888888


Q ss_pred             ecCCCcccccCchHHhhcCcccceeeecccccc
Q 035852          686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFH  718 (960)
Q Consensus       686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~  718 (960)
                      +|++|+++ .+|..++ ...+|+.|+|++|++.
T Consensus        86 ~Ls~N~l~-~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             eccCCCCc-ccChhhh-ccccccccccCCCccc
Confidence            88888887 6666655 3446777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=1.7e-12  Score=127.18  Aligned_cols=111  Identities=25%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             CcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCc
Q 035852          626 DCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFP  705 (960)
Q Consensus       626 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~  705 (960)
                      ..+..+++|++|+|++|+++ .++ .+..+++|++|+|++|.++ .+|.....+++|++|++++|+++ .++. +. .++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~-~~-~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IE-KLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHH-HH-HHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cccc-cc-ccc
Confidence            34455555555555555555 232 3455555555555555554 33433333344555555555554 2222 22 345


Q ss_pred             ccceeeeccccccccCc-hhhcCCCCCCeEeecCCcCc
Q 035852          706 RMIILILRSNKFHGVFP-LELCHLAFLKILVLAGNNLS  742 (960)
Q Consensus       706 ~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  742 (960)
                      +|+.|++++|+++.... ..+..+++|+.|++++|++.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            55555555555543211 23444555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.2e-10  Score=102.65  Aligned_cols=104  Identities=23%  Similarity=0.200  Sum_probs=60.1

Q ss_pred             EEEccCCcCCCCCCCCccCCCCCcEEeCCCCC-CCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCC
Q 035852          218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQ-FDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSS  296 (960)
Q Consensus       218 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  296 (960)
                      .++..++++...+ ..+..+++|++|++++|+ ++ ...+..|.++++|+.|++++|+++...+.+|..+++|++|+|++
T Consensus        12 ~l~c~~~~~~~~p-~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          12 GLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             CEECCSSCCCTTT-TTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             eEEecCCCCccCc-ccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3444444444332 245555666666665443 54 44445566666666666666666655566666666666666666


Q ss_pred             CcCCCcchhhhcCCCCCCEEeeeCcccc
Q 035852          297 NHFSYLIPEWLNKFSRLEYLSLSSNRLQ  324 (960)
Q Consensus       297 n~l~~~~p~~l~~l~~L~~L~L~~n~l~  324 (960)
                      |+++...+..+..+ +|+.|+|++|.+.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCccc
Confidence            66665444444333 5667777766664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.4e-07  Score=84.67  Aligned_cols=13  Identities=38%  Similarity=0.345  Sum_probs=5.8

Q ss_pred             cceeecCcccCcc
Q 035852          832 LRSLNLSHNFFSG  844 (960)
Q Consensus       832 L~~L~Ls~N~l~g  844 (960)
                      |+.|++++|.+++
T Consensus       117 L~~L~L~~Npl~~  129 (162)
T d1koha1         117 LEELWLDGNSLSD  129 (162)
T ss_dssp             CSSCCCTTSTTSS
T ss_pred             cceeecCCCCcCc
Confidence            4444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.5e-07  Score=86.31  Aligned_cols=63  Identities=27%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             CCCCCEEeCCCCcCCCc--chhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC
Q 035852          286 WTSLRHLDLSSNHFSYL--IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE  349 (960)
Q Consensus       286 l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~  349 (960)
                      +++|++|+|++|+++..  ++..+..+++|+.|++++|.++ .++........+|++|++++|++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            44444444444444432  1222334444444444444444 222122222334455555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=1.1e-05  Score=75.19  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=27.1

Q ss_pred             CCCCCCEEeCCCC-CCCCCC---CccccCCCCCCCEEeCCCCcccCC----chhhhcCCCCCcEEeCCCCCC
Q 035852          110 DFEHLIYLNLSYN-DFKGIQ---IPRFLGSMGNLRFLDLSGAGFVGM----IPNQIGNLSNLQYLNLRPNYL  173 (960)
Q Consensus       110 ~l~~L~~L~Ls~n-~~~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~i  173 (960)
                      +.++|+.|+|+++ .++...   +-..+...++|++|+|++|.+...    +...+...+.|++|++++|.+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            3455666666543 232210   122334445555555555544322    222233334444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=0.00012  Score=67.97  Aligned_cols=39  Identities=13%  Similarity=-0.034  Sum_probs=17.8

Q ss_pred             hcCCCCCCEEecCCCcCCCC-------CcccccCCCCCcEEecCCc
Q 035852          410 IGKFKVLNSVDLSENSISGQ-------VPWSLGKLSSLRYLDISNN  448 (960)
Q Consensus       410 l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n  448 (960)
                      +...+.|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            33445555555555543311       2223334455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=0.00051  Score=63.41  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=28.5

Q ss_pred             CCCCcEEeCCC-CCCCCCh---hHHhhcCCCCCCEEeccCcccCCC----CcccccCCCCCCEEeCCCCcCC
Q 035852          237 FSSLVTLDLSH-NQFDNSL---IATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFS  300 (960)
Q Consensus       237 l~~L~~L~Ls~-n~l~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  300 (960)
                      .+.|++|++++ +.+++..   +...+...++|++|++++|.+...    +.+.+...++++.+++++|.+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34555555554 2343111   223334455555555555554422    1222334455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.74  E-value=0.0008  Score=62.04  Aligned_cols=15  Identities=20%  Similarity=0.107  Sum_probs=7.4

Q ss_pred             ccCCCCCcEEecCCc
Q 035852          434 LGKLSSLRYLDISNN  448 (960)
Q Consensus       434 l~~l~~L~~L~L~~n  448 (960)
                      +...++|+.|+++.+
T Consensus       128 L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         128 LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHCSSCCEEECCCS
T ss_pred             HHhCCCcCEEeCcCC
Confidence            334455555555444