Citrus Sinensis ID: 035860

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MASTPKQSKSNANKLQPKSQLSYFNPRIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLSFKNLK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHcccccHHHHHccHHHHHHHHHHHccccccccEEEEccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEccccccEEEcccccccccccccccccccccccEEEEEEccccccEEEEEEEccccccccEEEEEEccccccEEEEcccccccccccccccEEEcccEEEEEEEccccEEEEEEEEccccEEEEEcccccccccccccEEEEEccEEEEEEcccccccccccccEEEEEEEccccccccEEEEEEEcccccccccccccccEEEEEEEEEccEEEEEEEccccEEEEEccccccEEEEcccccccccccEEccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccccccEEccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEcccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEcccEEEEccccEEEEccccccEEEcccccccEEEccccccccccccEEEEEEEccccccEEEEEEEccccccccEEEEEEEcccccEEEEEccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEccccccccEcccccccccccEEEEEEEccEEEEEEEEccccccccccEEEEEEEEEccccccEEEEEEEEccccccccEEcccEEEEEEEEEcccEEEEEEcccccccEEEEEccccccEEEEEEEEcccccEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mastpkqsksnanklqpksqlsyfnpriQNQIQLTTIKlcsmefpsniiyNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAAteeshhlplnlsanrdgvfpyiydghalkqsehalfpyiyddnnalkpgeyptnldfsnerdtpiYFVAYGFicfgesschvkdhvhlwnplrrevlrlpklgyycdyqhdyydayrglrghfgmgydsatgtykivqsypvielsdYKIAVYTLgkddswriissslalrpdvsyefgvsaygdmhwisfdqnnihtcifsfdfnkeefkkidlpidcnmeprspslinlrgnlalvtfptddydgdteYIWIEIWVLKDHYERNEWSKAYKistdqdgdrieeeDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLenddchlricpvpknfdhhdtirftgsvlsfknlk
Flexible Loop (DISEMBL)
mastpkqsksnanklqpksqlsyfnPRIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPknfdhhdtirftgsvlsfknlk
Low Complexity Region (SEG)
MASTPKQSKSNANKLQPKSQLSYFNPRIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLSFKNLK
Disordered region (IsUnstruct)
**********************YFNPRIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLS*****
Disordered Region (DISOPRED)
*********************************************SNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLSFKNL*
Disordered Region (DISEMBL)
****************PKSQLSYFNPRIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLSFKNLK
Disordered Region (DISPRO)
****************************************SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLSFKNLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTPKQSKSNANKLQPKSQLSYFNPRIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHLRICPVPKNFDHHDTIRFTGSVLSFKNLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q9C6J3	396	Putative F-box protein At	yes	no	0.725	0.805	0.292	2e-16
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.656	0.676	0.273	2e-16
Q9FZF8	389	Putative F-box protein At	no	no	0.6	0.678	0.281	6e-16
Q9T0J4	426	Putative F-box protein At	no	no	0.654	0.676	0.265	5e-14
Q9SSQ2	423	F-box protein At1g52490 O	no	no	0.647	0.673	0.253	4e-13
Q9SJ06	396	F-box protein At2g21930 O	no	no	0.638	0.709	0.25	2e-12
Q3E7D1	403	F-box protein At2g40925 O	no	no	0.622	0.679	0.235	3e-12
Q9SS35	389	Putative F-box protein At	no	no	0.604	0.683	0.273	8e-12
Q9LMB0	350	Putative F-box protein At	no	no	0.584	0.734	0.276	2e-11
Q3EBI7	449	F-box protein At2g40910 O	no	no	0.702	0.688	0.231	2e-11

>sp|Q9C6J3|FB52_ARATH Putative F-box protein At1g50870 OS=Arabidopsis thaliana GN=At1g50870 PE=4 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 163/376 (43%), Gaps = 57/376 (15%)

Query: 27  RIQNQIQLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVM 86
           R  + I  TT  LC    P ++I  ILLR PVK +LRFRCVSK W +      F +++  
Sbjct: 18  RQSSSIPKTTTLLC----PLDLILEILLRLPVKSVLRFRCVSKLWLSTTTDPYFTNSY-- 71

Query: 87  AATEESHHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFS 146
            A   +    L    N+D +F + +  H     E   +    D  +     +YP    F 
Sbjct: 72  EARSSTRPSLLMFFKNKDKLFVFTFPHHNQNSKETHSYSQHVDSYHI----KYPKYCCF- 126

Query: 147 NERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRG 206
                P     +G I F  S+  +     +WNP  R+ L LPK             +++G
Sbjct: 127 -----PFTESVHGLISFRISTKPI-----IWNPTMRQFLILPKPE----------KSWKG 166

Query: 207 LRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGK-DDSWRIISSSLALRPDVSYE 265
           L     +GYD   G +K++        SD +  V TLG   + WR I S+L  R  + Y 
Sbjct: 167 L--SVFLGYDPVEGKHKLM-CMNRDNTSD-ECRVLTLGSAQEKWRRIKSNLKHRSILRY- 221

Query: 266 FGVSAYGDMHWISF-DQNNI--HTCIFSFDFNKEEFKKIDLPID--CNMEPRSPSLINLR 320
           +G    G +++ ++ DQ     +  I SF+   E+F  I LP     NM      LI  +
Sbjct: 222 YGQCINGVIYYQAYIDQMGFISNPTIMSFEVRSEKFDTITLPSGSFANM------LIPYQ 275

Query: 321 GNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYV 380
           G LA V    DD +G      I +W L+D  E++ WS    ++     DR  + DF   +
Sbjct: 276 GRLACVNNTMDDVNGG-----ITLWTLEDA-EKHIWSCKLFLAPLAHYDRSLKTDF--KL 327

Query: 381 CSIVVAGRWM-VLDTF 395
             I  AG ++ VL TF
Sbjct: 328 DGITHAGEFIYVLSTF 343

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 147/351 (41%), Gaps = 62/351 (17%)

Query: 41  SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHV--MAATEESHHLPLN 98
           S+  P  II  ILLR P K + RFRCVSK +  +     FA  H+  +   E    L   
Sbjct: 33  SLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRK 92

Query: 99  LSANRDGV----FPYIYDG-HALKQSEH--------ALFP---------YIYDDNNALKP 136
           L  +   +    F  I DG   L   EH        ++F          ++YDD   +  
Sbjct: 93  LIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVM-- 150

Query: 137 GEYPTNLDFSNERDTPIYFVAY--GFICF--GESSCHVKDHVHLWNPLRREVLRLPK--L 190
                 L+  + R   +  V    G +C   GE +      V L+NP   +  RLP+   
Sbjct: 151 ----LKLNAKSYRRNWVEIVGSSNGLVCISPGEGA------VFLYNPTTGDSKRLPENFR 200

Query: 191 GYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR 250
               +Y+ D +  Y       G G+D  T  YK+V+     E      +VY+L K DSWR
Sbjct: 201 PKSVEYERDNFQTY-------GFGFDGLTDDYKLVKLVATSE-DILDASVYSL-KADSWR 251

Query: 251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLP---IDC 307
            I +      D SY  GV   G +HW+  +  +    + +FD   EEF+++ +P    DC
Sbjct: 252 RICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDC 311

Query: 308 NMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK 358
           +    +  + +L G L +V    D +D        +IWV+ ++ E   WS+
Sbjct: 312 SHRFSNFVVGSLNGRLCVVNSCYDVHD--------DIWVMSEYGEAKSWSR 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 141/323 (43%), Gaps = 59/323 (18%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAH-VMAATEESHHLPLNLSAN 102
           FP ++   ILLR PVK ++RFRCVSK WS+II    F   +   ++T +S       S  
Sbjct: 25  FPLDLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQS-- 82

Query: 103 RDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPG------EYPTNLDFSNERDTPIYFV 156
            D +F +    H             YD N++ +        + P    + +  ++     
Sbjct: 83  -DKLFVFSIPKHH------------YDSNSSSQAAIDRFQVKLPQEFSYPSPTES----- 124

Query: 157 AYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYD 216
            +G ICF     HV   V +WNP  R+ L LPK             +++ L     +GYD
Sbjct: 125 VHGLICF-----HVLATVIVWNPSMRQFLTLPKPR----------KSWKELT--VFLGYD 167

Query: 217 SATGTYKIVQSYPVIELSDYKIAVYTLGK-DDSWRIISSSLALRPDVSYEFGVSAYGDMH 275
              G +K+V   P     D +  V TLG    SWR + +    R   +  +G    G ++
Sbjct: 168 PIEGKHKVV-CLPRNRTCD-ECQVLTLGSAQKSWRTVKTKHKHR-STNDTWGRCIKGVVY 224

Query: 276 WISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALV-TFPTDDYD 334
           +I++  +    CI SF    E+F  I LP++         +IN  G LA V    T + D
Sbjct: 225 YIAYVYHTRVWCIMSFHVKSEKFDMIKLPLE---NIYRDVMINYEGRLACVDKLYTLNND 281

Query: 335 GDTEYIWIEIWVLKDHYERNEWS 357
           G      I +W+L+D  E+++WS
Sbjct: 282 G------IRLWILEDA-EKHKWS 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0J4|FB249_ARATH Putative F-box protein At4g38870 OS=Arabidopsis thaliana GN=At4g38870 PE=4 SV=1

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 146/335 (43%), Gaps = 47/335 (14%)

Query: 33  QLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEES 92
           + T + + S   P ++I  IL +  +K L+RF CVSK W++II    F    +  + +  
Sbjct: 42  KFTKVSVNSELLPVDLIMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRP 101

Query: 93  HHLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTP 152
             L     A   G    I+    LK +       I   +++        ++    ++   
Sbjct: 102 KSLVFVFRAQSLG---SIFSSVHLKSTRE-----ISSSSSSSSASSITYHVTCYTQQRMT 153

Query: 153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFG 212
           I    +G IC+G  S  V     ++NP  R  + LPK+       + Y            
Sbjct: 154 ISPSVHGLICYGPPSSLV-----IYNPCTRRSITLPKIKAGRRAINQY------------ 196

Query: 213 MGYDSATGTYKIV---QSYPVIE----LSDYKIAVYTLG-KDDSWRIISSSLALRPDVSY 264
           +GYD   G YK+V   +  P++     L++ +I V TLG +D SWR+I   +     VS 
Sbjct: 197 IGYDPLDGNYKVVCITRGMPMLRNRRGLAE-EIQVLTLGTRDSSWRMIHDIIPPHSPVSE 255

Query: 265 EFGVSAYGDMHWISFDQNNIH-TCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNL 323
           E  ++  G +++ +F    ++ + I SFD   E+F  I +P  CN    S  L    G L
Sbjct: 256 ELCIN--GVLYYRAFIGTKLNESAIMSFDVRSEKFDLIKVP--CNFRSFS-KLAKYEGKL 310

Query: 324 ALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK 358
           A++      Y+  T  I I +W+L+D     EWSK
Sbjct: 311 AVIF-----YEKKTSGI-IGLWILEDA-SNGEWSK 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 134/335 (40%), Gaps = 50/335 (14%)

Query: 33  QLTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAAT--E 90
           QL   KL  +  P ++I  IL + P K L+RFRCVSK WS II         +MA +  +
Sbjct: 44  QLLLSKLKDVHLPLDLIVEILKKLPTKSLMRFRCVSKPWSFIISKRRDFVESIMARSLRQ 103

Query: 91  ESHHLPLNLSANRD-GVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNER 149
             H LP+ +    D G F  +           + F        ++ PG         N  
Sbjct: 104 PPHKLPVFIFHQCDPGTFFTV----------SSTFSQSTKPKVSIMPGR--------NHY 145

Query: 150 DTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRG 209
           +   Y    GFIC   S   V D V ++NP  R+ L LPK+         +   Y     
Sbjct: 146 NAFRYQYVRGFICCSSS---VYDLVTIYNPTTRQCLPLPKIESMVLSPKRHKHCY----- 197

Query: 210 HFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKD-DSWRIISSSLALRPDVSYEFGV 268
               GYD     YK++      +       V+TLG+D   WR I  ++          GV
Sbjct: 198 ---FGYDHVMNEYKVLAMVNDSQELTQTFHVFTLGRDCPQWRKIRGNIDYELISVSRAGV 254

Query: 269 SAYGDMHWISF----DQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSP--SLINLRGN 322
              G +++++     ++N     + SFD   E F  +  P +    P+     L N +G 
Sbjct: 255 CIDGTIYYVAVRRKDNENYGELFMMSFDVKSERFYHVRTP-ETLWSPKCTERGLFNHQGK 313

Query: 323 LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWS 357
           L  ++   ++         I +W++++  E+ EWS
Sbjct: 314 LGCISSNENN---------ISMWIMENA-EKQEWS 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ06|FB115_ARATH F-box protein At2g21930 OS=Arabidopsis thaliana GN=At2g21930 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 142/348 (40%), Gaps = 67/348 (19%)

Query: 34  LTTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESH 93
           L T    S++ P ++I  IL R PVK L RF  VSK +++II +  F  ++++ ++    
Sbjct: 15  LITCSGNSVQIPFDLIPEILKRLPVKTLARFLSVSKEYTSIIRNRDFMKSYLINSSTRPQ 74

Query: 94  HLPLNLSANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPI 153
            L   ++    G+              H  F  I  D         PT L          
Sbjct: 75  SLIFTIAGG--GI--------------HCFFSLI--DQGESTSSSKPTYLMNCPHLQLKT 116

Query: 154 YFVA-YGFICFGESSCHVKDHVHLW--NPLRREVLRLPKL--GYYCDYQHDYYDAYRGLR 208
           +  + +G IC G  S  +     L   NP  R  + LPK+   + C Y H          
Sbjct: 117 FAPSVHGLICHGPPSTLIVSSPRLIVSNPSTRRSIILPKIDANHECIYHH---------- 166

Query: 209 GHFGMGYDSATGTYKIVQSYPVIELSDYK-----IAVYTLGKDDSWRIISS------SLA 257
               MGYD   G YK++     + +   +     + V+TL K +SWR++           
Sbjct: 167 ----MGYDPIDGDYKVLCMMKGMHVYQRRYLAKELQVFTLRKGNSWRMVEDFPPHCLCHE 222

Query: 258 LRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLI 317
             PD+         G +++++      +  + SFD   E+F  I    D ++ P+   L 
Sbjct: 223 DTPDLCIN------GVLYYVAMLDTASNHAVMSFDVRSEKFDLIKGGPDGDLNPK---LT 273

Query: 318 NLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK-AYKIST 364
              G  AL+ FP  DY        I +WV++D   ++EWSK +Y +S+
Sbjct: 274 RYEGKPALL-FPGSDYR-------INLWVIED-AAKHEWSKMSYDVSS 312

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E7D1|FB131_ARATH F-box protein At2g40925 OS=Arabidopsis thaliana GN=At2g40925 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 129/331 (38%), Gaps = 57/331 (17%)

Query: 43  EFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSAN 102
           E P +++  IL+R P K  +RF+CVSK WS +I    F +      T +           
Sbjct: 26  EIPPDLMIEILIRLPTKSFMRFKCVSKQWSPLISGRYFCNRLFTCVTRQQQQQ------- 78

Query: 103 RDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAY--GF 160
                P +Y     K  +  L      DN           +    +   P YF A   G 
Sbjct: 79  -----PRLYMCLVAKDKQCVLLSSTSPDNTCF--------VLVDQDLSIPGYFFASVPGL 125

Query: 161 IC--FGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSA 218
           +C  FG  +C       ++NP  +++L LP +      Q             + +G D  
Sbjct: 126 LCFQFGTKAC-------IYNPSTKQLLTLPSVKSDITAQQGQLKT-----TQYYIGRDPV 173

Query: 219 TGTYKIVQSYPVIELSDYKIA----VYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDM 274
              YK+V +  +       ++    V+TL    SW+ +       P      G S  G +
Sbjct: 174 NDQYKLVCTILIYSKLFANMSSEHWVFTLELGGSWKKVVPLGNYHPHAPATAGRSIDGVV 233

Query: 275 HWISFDQNNIHTC-IFSFDFNKEEF------KKI-DLPIDCNMEPRSPSLINLRGNLALV 326
           H++++   +++ C + SF+   EE       +KI D+P+   M      LI   G LA+ 
Sbjct: 234 HYLAW--VDLYKCAVVSFNIRSEEVTTFLLPRKIWDVPVPALM--MKADLIEYDGKLAIF 289

Query: 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWS 357
           +      +G      +E+WVLKD   + +WS
Sbjct: 290 SHSYLKDEG-----LVELWVLKDAAGKKKWS 315

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 133/318 (41%), Gaps = 52/318 (16%)

Query: 45  PSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRD 104
           P +++  ILLR P K + RFRCVSK WS+I     F    +   T  S  L L   AN  
Sbjct: 28  PLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYF----INLLTTRSPRLLLCFKANEK 83

Query: 105 GVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDT-PIYFVAYGFICF 163
                I         +H      ++ +++        +++FS E +  P      G ICF
Sbjct: 84  FFVSSI--------PQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICF 135

Query: 164 GESSCHVKDHVHLWNPLRREVLRLPKL-GYYCDYQHDYYDAYRGLRGHFGMGYDSATGTY 222
            ES+      + +WNP  R++L LPK  G   D                 +GYD   G +
Sbjct: 136 QESA-----RLIVWNPSTRQLLILPKPNGNSNDLT-------------IFLGYDPVEGKH 177

Query: 223 KIVQSYPVIELSDY--KIAVYTLGKDDS-WRIISSSLALRPDVSYEFGVSAYGDMHWISF 279
           K++     +E S       V TLG     WR + +    R D  Y+ G    G ++ I++
Sbjct: 178 KVM----CMEFSATYDTCRVLTLGSAQKLWRTVKTHNKHRSDY-YDSGRCINGVVYHIAY 232

Query: 280 DQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEY 339
            ++     + SFD   E F  I+LP   + +     LI+  G LA V     + +G    
Sbjct: 233 VKDMCVWVLMSFDVRSEIFDMIELP---SSDVHKDVLIDYNGRLACVGREIIEKNG---- 285

Query: 340 IWIEIWVLKDHYERNEWS 357
             I +W+L+ H   N+WS
Sbjct: 286 --IRLWILEKH---NKWS 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMB0|FB10_ARATH Putative F-box protein At1g19160 OS=Arabidopsis thaliana GN=At1g19160 PE=4 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 138/325 (42%), Gaps = 68/325 (20%)

Query: 45  PSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAH-VMAATEESHHLPLNLSANR 103
           P + +  ILLR PVK L RF CVSK   +II S  F + +   A+T ES      + A R
Sbjct: 3   PEDPLVEILLRLPVKSLARFLCVSKRCYSIIRSRHFINLYQSRASTRESR----VMFAFR 58

Query: 104 DGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICF 163
           D    + ++  +L Q                 P    TN+D S     P+     G IC 
Sbjct: 59  DTNTFFRWNFFSLSQ-----------------PPSSVTNID-STSYCMPV--CVNGLIC- 97

Query: 164 GESSCHVKDHVHLW--NPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGT 221
                 V+    LW  NP+ +++   P  G    +   Y            MGYD     
Sbjct: 98  ------VEHMFRLWICNPVTKKITLFPDCGPRKQFTTWY------------MGYDPINYQ 139

Query: 222 YKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLAL-RPDVSYEFGVSAYGDMHWISFD 280
           YK++       ++ Y + V+T G + SWR+I +      P+     GV  +G +++ ++ 
Sbjct: 140 YKVLYLSREHLIAPYIVEVFTFGDEGSWRMIEADENFHSPETR---GVCTHGVLYYGAYT 196

Query: 281 QNNIHTCIFSFDFNKEEFKK-IDLPID-CNMEPRSPSLINL---RGNLALV-TFPTDDYD 334
            +     I  FD   E+F K I++P + C++      L  L   +G L L+ T  T  YD
Sbjct: 197 GDGAK--IVRFDVRTEKFGKFIEMPAEACSIHGVYLGLYTLLDYQGKLGLLATQATSTYD 254

Query: 335 GDTEYIWIEIWVLKDHYERNEWSKA 359
                    +WVL+D  E++EWSK 
Sbjct: 255 ---------LWVLEDA-EKHEWSKV 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EBI7|FB130_ARATH F-box protein At2g40910 OS=Arabidopsis thaliana GN=At2g40910 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 149/384 (38%), Gaps = 75/384 (19%)

Query: 7   QSKSNANKLQPKSQLSYFNPRIQNQIQLTTIKL----CSM--------EFPSNIIYNILL 54
           QS      L+   QL   + +  N + L   KL    CS         E P +++  I++
Sbjct: 20  QSVPQVVSLRDSDQLQIMDEKGDNSLALLPAKLPMRMCSTRERRKYTCEIPPDLLMEIVM 79

Query: 55  RQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESH-HLPLNLSANRDGVFPYIYDG 113
           R P K ++RF+C+SK WS++I    F ++   + T +   H+ + L           + G
Sbjct: 80  RLPAKSMVRFKCISKQWSSLISCRYFCNSLFTSVTRKKQPHIHMCLVD---------HGG 130

Query: 114 HALKQSEHALFP----YIYDDNNALKP-GEYPTNLDFSNERDTPIYFVAYGFICFGESSC 168
             +  S  +  P    Y+ D + +L   G +  NL               G +CF     
Sbjct: 131 QRVLLSLSSTSPDNTCYVVDQDLSLTGMGGFFLNL-------------VRGLLCFS---- 173

Query: 169 HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228
            V++   ++NP  R+ L LP +        D     R     + +G+D     YK+V + 
Sbjct: 174 -VREKACIYNPTTRQRLTLPAIKSDIIALKDERKDIR-----YYIGHDPVNDQYKLVCTI 227

Query: 229 PVIE--LSDYKIA--VYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGD----MHWISFD 280
            +     ++ K    V+ L    SWR + +  +  P      G    G     M W+  D
Sbjct: 228 GISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQFINGSVVYYMAWLDMD 287

Query: 281 QNNIHTC-IFSFDFNKEEFKKIDLPIDCN-----MEPRSPSLINLRGNLALVTFPTDDYD 334
                TC + SFD   EE   I + ++              LI   G +A+      D+ 
Sbjct: 288 -----TCAVVSFDITSEELTTIIVTLEAGDVALPAGRMKAGLIQYHGEIAVF-----DHT 337

Query: 335 GDTEYIWIEIWVLKDHYERNEWSK 358
              E   +++WVLKD   + +WSK
Sbjct: 338 HLKEKFLVDLWVLKDAGMK-KWSK 360

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
357473013	410	CCP-like protein [Medicago truncatula] g	0.654	0.702	0.260	1e-17
357456135	386	F-box/kelch-repeat protein [Medicago tru	0.688	0.784	0.256	7e-17
357487835	351	F-box/kelch-repeat protein [Medicago tru	0.622	0.780	0.278	3e-16
357455657	405	F-box protein [Medicago truncatula] gi|3	0.640	0.696	0.272	5e-16
357462553	426	F-box protein [Medicago truncatula] gi|3	0.675	0.697	0.248	5e-16
311334683	382	S-locus linked F-box protein type-3 [Pet	0.665	0.767	0.269	7e-16
357455665	405	F-box protein [Medicago truncatula] gi|3	0.640	0.696	0.272	7e-16
357456099	400	F-box protein [Medicago truncatula] gi|3	0.663	0.73	0.282	1e-15
162134187	394	S-locus F-box-like protein b [Petunia in	0.681	0.761	0.269	2e-15
148923044	388	class S F-box protein [Nicotiana alata]	0.675	0.765	0.252	4e-15

>gi|357473013|ref|XP_003606791.1| CCP-like protein [Medicago truncatula] gi|355507846|gb|AES88988.1| CCP-like protein [Medicago truncatula]

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 153/326 (46%), Gaps = 38/326 (11%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNL---S 100
            P +++  IL R PVK+L + RC SK+++ +I S  FA  H+  +    HHL +     S
Sbjct: 36  LPMDLVEEILCRLPVKLLFQLRCQSKSFNTLISSLEFARKHLSMSNMHHHHLIITYSHES 95

Query: 101 ANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVA-YG 159
            ++  VF   Y  H++    +++F      N+ +K    PT L++  +++  +Y  + +G
Sbjct: 96  YSKSRVFS--YPLHSIFYPRYSIF------NSIVK----PTELEYPFDKEKIVYGGSCHG 143

Query: 160 FICFG---ESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYD 216
            +C     +S   VKD V LWNP  ++    P   Y     +  Y+        FG GYD
Sbjct: 144 ILCLARKQDSRAKVKD-VILWNPAIKKFQLSPSFKYPPIRDNYEYNPI------FGFGYD 196

Query: 217 SATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHW 276
                YK+V  +  ++     + V+TLG   SWR+I+    L P+  Y     A G +HW
Sbjct: 197 HIFNLYKVVVIFDSVDGISKAVMVHTLG-TSSWRLINVEFPL-PNAHYRSLQFASGALHW 254

Query: 277 ISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGD 336
           I + ++  H+ + SFD   E +K++  P +  +E     ++ +  N  L  F        
Sbjct: 255 IPYRKDYTHS-VDSFDLVTESYKRLLQP-NYGVEDVYKVILGVSRN-CLCIFACKK---- 307

Query: 337 TEYIWIEIWVLKDHYERNEWSKAYKI 362
               + + W++K++     W+K +++
Sbjct: 308 ---TFFDAWLMKEYGNEGSWTKLFRV 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456135|ref|XP_003598348.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355487396|gb|AES68599.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 153/366 (41%), Gaps = 63/366 (17%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSAN- 102
            P +++  IL R PVK+L++ RC+ K ++++I    FA  H+  +T+  HHL +    N 
Sbjct: 39  LPFDVLPEILCRLPVKLLVQLRCLCKFFNSLISDPKFAKKHLQLSTKR-HHLMVTSKNNL 97

Query: 103 -----RDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVA 157
                 D   P ++    +  ++  L+P              PTNL   ++      F+ 
Sbjct: 98  GELVHHDSPIPSLFSTSTVI-TQTQLYP--------------PTNLTNGHK------FML 136

Query: 158 YGFICFGESSCHVKDHVH--LWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGY 215
               C G   C V + V   LWNP  R+   LP L           +  RG       GY
Sbjct: 137 VRCYCDGIFCCVVLNGVSFFLWNPSIRKFKLLPPL-----------ENSRGHVFQISFGY 185

Query: 216 DSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMH 275
           D     YK++        S+ +++VYTLG D   RI     +   D  Y  GV   G ++
Sbjct: 186 DHFIDDYKVIGVS-----SENEVSVYTLGTDYWTRIKDIPYS---DPIYGNGVFVSGTVN 237

Query: 276 WISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDG 335
           W++ D     +CI S D  KE ++++ LP   + E  + SLI       L  F T D   
Sbjct: 238 WLACDD----SCILSLDLEKESYQQLFLP---DFENENDSLILSVLRDCLCVFATIDR-- 288

Query: 336 DTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF 395
                 + +W++K++  R  W+K Y +   QD      ED   Y  S +     +++  F
Sbjct: 289 -----ILNVWIMKEYGNRESWTKLYSVPNMQDRGLDAYEDLEPYTVSYISEDDQLLVGFF 343

Query: 396 RHDNKF 401
              ++ 
Sbjct: 344 HFQSRI 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487835|ref|XP_003614205.1| F-box/kelch-repeat protein [Medicago truncatula] gi|357487837|ref|XP_003614206.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355515540|gb|AES97163.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355515541|gb|AES97164.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 145/327 (44%), Gaps = 53/327 (16%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANR 103
            P +++  IL R P+K+LL+ RC+SK+++++I    FA  H+  +T   HHL L    N 
Sbjct: 4   LPIDLVAEILCRLPIKLLLQLRCLSKSFNSLITDPKFAKKHLRLSTT-LHHLILESRDNL 62

Query: 104 DGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFICF 163
             +  ++ D      S   +          L    +P  L+  + R         G +CF
Sbjct: 63  GEL--HLIDSPISSFSNFRV---------TLTKLSHPFILNTFSWR----MCTCDGILCF 107

Query: 164 GESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYK 223
             S+    + V LWNP  R+  R+P LGY C          R    H+  GYD     YK
Sbjct: 108 TPSTSK-DNFVVLWNPSIRKFKRVPPLGYQC----------RLFSNHYSFGYDPFIDNYK 156

Query: 224 IVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYG-----DMHWIS 278
           I+  Y   E    +I+V+TLG  + WR I        D  +   +   G      ++W++
Sbjct: 157 IIVVYFSRESEKNEISVHTLGT-EYWRRIQ-------DFPFSGHIGGPGIFVKDTVNWLA 208

Query: 279 FDQ--NNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGD 336
           F+   NN    I S D   E ++ I +P D N + +  SL  LR  L +  + T D D D
Sbjct: 209 FENVDNNGLFAIVSLDLETESYEIISIP-DVNSD-KYWSLEVLRDCLCI--YVTSDLDLD 264

Query: 337 TEYIWIEIWVLKDHYERNEWSKAYKIS 363
                  +W++K++  +  W+K Y +S
Sbjct: 265 -------VWIMKEYGIKESWTKLYSVS 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455657|ref|XP_003598109.1| F-box protein [Medicago truncatula] gi|355487157|gb|AES68360.1| F-box protein [Medicago truncatula]

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 141/334 (42%), Gaps = 52/334 (15%)

Query: 48  IIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVF 107
           +I  IL R PVK+LL+ RC  K+WS++I +  FA  H+  +T   H L    S+  D + 
Sbjct: 56  LIEEILSRLPVKLLLQLRCACKSWSSLISNPKFAKKHLSMSTR--HVLHCISSSGGDILK 113

Query: 108 PYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAY--GFICFGE 165
            Y  D      +  A+                   L++S  R +  YF+    G +C   
Sbjct: 114 SYPLDSIYTNATTTAI-----------------PQLEYSVHRCSN-YFIGSCNGILCLAA 155

Query: 166 SSCHVK-DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKI 224
              H       LWNP  R+   LP LG   D Q   Y     +   +G GYD  +  YK+
Sbjct: 156 EGYHTNLVTFRLWNPFIRKFKELPPLG---DQQTSAY-----IIKMYGFGYDPVSDNYKV 207

Query: 225 VQSYPVIELSDY------KIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWI- 277
           V    V + S +      ++ VYTLG  +SW+ IS        V    G    G ++W+ 
Sbjct: 208 VTVLRVFDYSSHILVKSDEVKVYTLG-INSWKSISVFPYSVFPVQQLSGKCVSGTINWLA 266

Query: 278 SFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDT 337
           S D       I S D   E ++++ LP    ++  +  L  LR  L +       + GD 
Sbjct: 267 SKDSKQSKYFILSLDLMNESYQEVSLPNYGKVDACNFHLSVLRDCLIM-------FSGDV 319

Query: 338 EYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRI 371
                 +WV+K++  +  W+K + IS ++D   I
Sbjct: 320 ------VWVMKEYGNKESWTKLFTISYNRDPHTI 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462553|ref|XP_003601558.1| F-box protein [Medicago truncatula] gi|355490606|gb|AES71809.1| F-box protein [Medicago truncatula]

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 149/330 (45%), Gaps = 33/330 (10%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSA-- 101
            P  I+  IL R PV+ LLRFR  SK+  ++IDSH+F + H+          PLN S   
Sbjct: 6   LPPEILAEILSRLPVESLLRFRSTSKSLKSLIDSHNFINLHLKN--------PLNQSVII 57

Query: 102 -NRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAY-- 158
            N   ++    D +      +++ P     N+  K G  P N+D    RD+ +  +    
Sbjct: 58  RNNSDIYQLQIDDNDFSNRINSIIPL----NHPFK-GNSP-NIDPYTRRDSTMALIGSCN 111

Query: 159 GFICFGESSC-----HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGM 213
           G +            +  + + +WNP  R+ L +P L     Y  +  +  RG     G 
Sbjct: 112 GLLAISNGQIAFTHPNAANEITIWNPNTRKHLIIPFLPMPVPYIMESNNPNRGCLCVHGF 171

Query: 214 GYDSATGTYKIVQSYPVIELS----DYKIAVYTLGKDDSWRIISS-SLALRPDVSYEFGV 268
           G+DS TG YK+++   +++L     D  + +++  K +SW+I+ S   +L    +    +
Sbjct: 172 GFDSLTGDYKLLRISWLLDLQNPFYDPHVRLFS-SKTNSWKIVPSFPYSLEYCQTMGVFI 230

Query: 269 SAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTF 328
                +HW++ ++      IF+F+   E F ++ LP++ +    + S       L     
Sbjct: 231 DNSNSIHWVANNELFEPRLIFAFNLTFEIFNEVPLPVEISQIKSNKSFGLDVAVLGGCLC 290

Query: 329 PTDDYDGDTEYIWIEIWVLKDHYERNEWSK 358
            T +Y   T++   ++WV+K++  R+ W K
Sbjct: 291 MTVNYKKTTKF---DVWVMKEYGSRDSWCK 317

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311334683|dbj|BAJ24861.1| S-locus linked F-box protein type-3 [Petunia x hybrida]

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 143/341 (41%), Gaps = 48/341 (14%)

Query: 43  EFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSAN 102
           + P +++ NIL R PVK L RF+CV+K+W ++I S +F + H+  AT       L   + 
Sbjct: 3   KLPKDVVINILFRIPVKSLFRFKCVTKSWYSLIQSVNFNNHHLNRATTVKDEFILFKRSF 62

Query: 103 RDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAYGFIC 162
           ++            K     L   I DD+  L P        FS + D P    +Y  IC
Sbjct: 63  KEP--------EGFKNVMSFLLCGIGDDD--LDP--------FSPDVDVPYLSTSYSCIC 104

Query: 163 FGESS-CHV------KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGY 215
              +  CH         ++ L NP  R    LP   +    Q  +Y  + G+    G GY
Sbjct: 105 HQLTGPCHGLILLTDSTNLVLINPATRNYRLLPSSPF--GVQRGFYRCFAGV----GFGY 158

Query: 216 DSATGTYKIVQ--------SYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFG 267
           DS   TYK+V+         +    + ++K  VY     DSWR ++      P   Y F 
Sbjct: 159 DSIEKTYKVVRISEMYGEPPFNCPSVMEWKGEVYD-SSIDSWREVAGVDEELPR-PYNFP 216

Query: 268 VSAY---GDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDC-NMEPRSPSLINLRGNL 323
            S        HW  +   N+   I  FD N E F+ +++P  C N + +  SL+ L   L
Sbjct: 217 CSEIFYERAFHW--YAHRNV-VLILCFDINTETFRTMEVPETCANYDEKCHSLLVLDEFL 273

Query: 324 ALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIST 364
            L  +P    +       IEIW+++++     W K + I +
Sbjct: 274 TLFCYPDPRRESSPIQETIEIWIMQEYNVNESWIKKHTIKS 314

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455665|ref|XP_003598113.1| F-box protein [Medicago truncatula] gi|355487161|gb|AES68364.1| F-box protein [Medicago truncatula]

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 141/334 (42%), Gaps = 52/334 (15%)

Query: 48  IIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVF 107
           +I  IL R PVK+LL+ RC  K+WS++I +  FA  H+  +T   H L    S+  D + 
Sbjct: 56  LIEEILSRLPVKLLLQLRCACKSWSSLISNPKFAKKHLSMSTR--HVLHCISSSGGDILK 113

Query: 108 PYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFVAY--GFICFGE 165
            Y  D      +  A+                   L++S  R +  YF+    G +C   
Sbjct: 114 SYPLDSIYTNATTTAI-----------------PQLEYSFHRCSN-YFIGSCNGILCLAA 155

Query: 166 SSCHVK-DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKI 224
              H       LWNP  R+   LP LG   D Q   Y     +   +G GYD  +  YK+
Sbjct: 156 EGYHTNLVTFRLWNPFIRKFKELPPLG---DQQTSAY-----IIKMYGFGYDPVSDNYKV 207

Query: 225 VQSYPVIELSDY------KIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWI- 277
           V    V + S +      ++ VYTLG  +SW+ IS        V    G    G ++W+ 
Sbjct: 208 VTVLRVFDYSSHILVKNDEVKVYTLG-INSWKSISVFPYSVFPVQRLSGKCVSGTINWLA 266

Query: 278 SFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDT 337
           S D       I S D   E ++++ LP    ++  +  L  LR  L +       + GD 
Sbjct: 267 SKDSKQSKYFILSLDLMNESYQEVSLPNYGKVDACNFHLSVLRDCLIM-------FSGDV 319

Query: 338 EYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRI 371
                 +WV+K++  +  W+K + IS ++D   I
Sbjct: 320 ------VWVMKEYGNKESWTKLFTISYNRDPHTI 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456099|ref|XP_003598330.1| F-box protein [Medicago truncatula] gi|355487378|gb|AES68581.1| F-box protein [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 151/340 (44%), Gaps = 48/340 (14%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANR 103
            P +++  IL R PVK+LL+ RC  K+W+++I  H FA  H+  +T    H       + 
Sbjct: 33  LPFDLVAEILCRLPVKLLLQLRCFCKSWNSLITDHKFAKKHLSLSTTRCLH-----CVSY 87

Query: 104 DGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEY-PTNLDFSNERDTPIYFVAY--GF 160
            G FPY+Y    LK   + L P + +    +   EY P N+   + R     FV    G 
Sbjct: 88  TG-FPYLY---VLK--SYPLGPVLNNLTTNITEYEYSPYNIHGDHPRLCVDCFVGSCNGI 141

Query: 161 ICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATG 220
           +CF  ++   K  V LWNP  R++   P       +Q   +         FG GYDS   
Sbjct: 142 LCF--TAGIYKISVILWNPSIRKIKEFPL------FQKPNWSF---THMAFGFGYDSFND 190

Query: 221 TYKIVQSYP-VIELSDYKIAVYTLGK-----DDSWRIISSSL--ALRPDVSYEFGVSAYG 272
            YK+V     +I+ S   IA  T  K      + W+ I      ++ P+ S +F      
Sbjct: 191 NYKVVVVLQGLIQDSSGNIACKTEVKVHTSITNCWKNIQEFTFGSILPEQSGKFVSDTIN 250

Query: 273 DMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPID-----CNMEPRSPSLINLRGNLALVT 327
            +  I FD  +    I SFD  KE ++K+ LP       CN      +L  LR  L  VT
Sbjct: 251 WLAVIDFDGRSPRF-IISFDLEKESYQKVLLPDSGGVNVCNFL----ALFVLRDCLC-VT 304

Query: 328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQD 367
           +   D+D     +  ++W++K++  ++ W+K + +S   D
Sbjct: 305 YGDSDFDS----VLKDVWIMKEYGNKDSWTKLFTLSCRVD 340

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162134187|gb|ABX82525.1| S-locus F-box-like protein b [Petunia integrifolia subsp. inflata]

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 147/330 (44%), Gaps = 30/330 (9%)

Query: 44  FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANR 103
            P ++   IL R PVK LLRF+ +SKTWS +I+S +F + H+  AT  ++   L   + R
Sbjct: 10  LPEDVAMYILSRFPVKALLRFKFISKTWSTLIESSTFINIHLNRATTTNNEFLLFSRSYR 69

Query: 104 DGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIY-FVAYGFIC 162
           +       +    K +   L     +D++ +      ++LD      T  Y F      C
Sbjct: 70  E-------ETEGFKNALSIL--SCGNDDDLIHT---ISDLDLPYLTFTQRYLFNKLVGPC 117

Query: 163 FGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTY 222
            G       + + L+NP  +  + +P   + C         +R  RG  G G+DS    Y
Sbjct: 118 NGLIVLTDFEIIVLFNPATKIYMLIPPSPFVCPKGF-----HRSFRGGVGFGFDSIVKDY 172

Query: 223 KIVQSYPVIELSDY-------KIAVYTLGKDDSWRIISSSLALRPDVSYE--FGVSAYGD 273
           K+V    V + S++       K+ VY + + DSWR ++      P V Y   F     G 
Sbjct: 173 KLVAISEVFKDSEWGTDEKEQKVEVYDM-RIDSWRDLNHVDQQLPTVYYYPCFERLYNGA 231

Query: 274 MHWISFDQNNIHTCIFSFDFNKEEFKKIDLP-IDCNMEPRSPSLINLRGNLALVTFPTDD 332
            HW + +    H  I SFD + E F  I +P  D +   +  +LI L  +L L+ +P  D
Sbjct: 232 FHWYAINDRFDHV-ILSFDISTEIFHSIKMPATDKSSGGKKYALIVLNESLTLICYPNPD 290

Query: 333 YDGDTEYIWIEIWVLKDHYERNEWSKAYKI 362
            + D     ++IW+++++     W+K Y I
Sbjct: 291 CEMDPSKDSMDIWIMEEYGVYESWTKKYII 320

Source: Petunia integrifolia subsp. inflata

Species: Petunia integrifolia

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148923044|gb|ABR18786.1| class S F-box protein [Nicotiana alata]

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 40/337 (11%)

Query: 43  EFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSAN 102
           + P +++  IL R  VK LLRF+ +SK+W  +I S +F + H+  +T   +   L   + 
Sbjct: 9   KLPEDVVIYILSRFSVKSLLRFKFISKSWYTLIQSSTFINVHLNRSTITKNEFILFSRSF 68

Query: 103 RDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDTPIYFV------ 156
           R        +    K     +    Y+D N +       +LD      TP Y        
Sbjct: 69  R-------IETEGFKNVLSIISSDDYNDLNVVL-----QDLDLPYLTFTPNYHFNELVGP 116

Query: 157 AYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYD 216
             G I   +      D + L+NP  +  + LP   + C   +     +R   G  G G+D
Sbjct: 117 CNGLIVLTDDD----DIIVLFNPATKNYMLLPPSPFVCSKGY-----HRSFIGGVGFGFD 167

Query: 217 SATGTYKIVQSYPVI-------ELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYE--FG 267
           S    YK V+   V        E  + K+ VY L + DSWR ++      P + +   F 
Sbjct: 168 SIGNDYKFVRISEVFLDTYWGPEEREQKVEVYDL-RSDSWRDLNHVDQQLPTIFWNQCFE 226

Query: 268 VSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNM-EPRSPSLINLRGNLALV 326
           +   G  HW  +   ++   I  FDF+ E F+ + +P  CN  + +  SL  +  +L L+
Sbjct: 227 MLHNGAFHW--YAVGDLTYEILCFDFSTEIFRSMKMPESCNAYDGKRYSLAVVNESLTLI 284

Query: 327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS 363
            +P+ D + D     ++IW++ ++     W+K Y IS
Sbjct: 285 CYPSPDSEIDQTQNTMDIWIMMEYGVNESWTKKYIIS 321

Source: Nicotiana alata

Species: Nicotiana alata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.675	0.695	0.265	2.3e-16
TAIR|locus:2141801	426	AT4G38870 "AT4G38870" [Arabido	0.359	0.370	0.307	7.1e-14
TAIR|locus:2202425	389	AT1G47790 "AT1G47790" [Arabido	0.470	0.532	0.274	2.6e-13
TAIR|locus:2076309	389	AT3G10240 "AT3G10240" [Arabido	0.3	0.339	0.306	6.7e-12
TAIR|locus:2045039	376	AT2G04920 "AT2G04920" [Arabido	0.429	0.502	0.245	1.4e-11
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.411	0.497	0.253	1e-10
TAIR|locus:2041016	420	AT2G43260 [Arabidopsis thalian	0.425	0.445	0.254	1.2e-10
TAIR|locus:2202160	350	AT1G19160 "AT1G19160" [Arabido	0.386	0.485	0.260	1.7e-10
TAIR|locus:2029569	355	AT1G31080 "AT1G31080" [Arabido	0.306	0.380	0.3	2.4e-10
TAIR|locus:2203736	459	AT1G47340 "AT1G47340" [Arabido	0.447	0.429	0.291	2.5e-10

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 91/343 (26%), Positives = 145/343 (42%)

Query:    41 SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHV-MAATEES------- 92
             S+  P  II  ILLR P K + RFRCVSK +  +     FA  H+ +    ES       
Sbjct:    33 SLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRK 92

Query:    93 -----HHL-PLNLSANRDGV--FPYIYDGHALKQSEHALFPYI--YDDNNALKPGEYPTN 142
                  H+L  L+ ++  DG+     +   + LK         I  Y  ++          
Sbjct:    93 LIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLK 152

Query:   143 LDFSNERDTPIYFV--AYGFICFGESSCHVKDHVHLWNPLRREVLRLPK--LGYYCDYQH 198
             L+  + R   +  V  + G +C        +  V L+NP   +  RLP+       +Y+ 
Sbjct:   153 LNAKSYRRNWVEIVGSSNGLVCISPG----EGAVFLYNPTTGDSKRLPENFRPKSVEYER 208

Query:   199 DYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLAL 258
             D +  Y       G G+D  T  YK+V+     E      +VY+L K DSWR I +    
Sbjct:   209 DNFQTY-------GFGFDGLTDDYKLVKLVATSE-DILDASVYSL-KADSWRRICNLNYE 259

Query:   259 RPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPI---DCNMEPRSPS 315
               D SY  GV   G +HW+  +  +    + +FD   EEF+++ +P    DC+    +  
Sbjct:   260 HNDGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFV 319

Query:   316 LINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK 358
             + +L G L +V    D +D        +IWV+ ++ E   WS+
Sbjct:   320 VGSLNGRLCVVNSCYDVHD--------DIWVMSEYGEAKSWSR 354

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141801 AT4G38870 "AT4G38870" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
 Identities = 59/192 (30%), Positives = 92/192 (47%)

Query:   176 LWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIV---QSYPVIE 232
             ++NP  R  + LPK+            A R     + +GYD   G YK+V   +  P++ 
Sbjct:   172 IYNPCTRRSITLPKI-----------KAGRRAINQY-IGYDPLDGNYKVVCITRGMPMLR 219

Query:   233 ----LSDYKIAVYTLG-KDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIH-T 286
                 L++ +I V TLG +D SWR+I   +     VS E  ++  G +++ +F    ++ +
Sbjct:   220 NRRGLAE-EIQVLTLGTRDSSWRMIHDIIPPHSPVSEELCIN--GVLYYRAFIGTKLNES 276

Query:   287 CIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWV 346
              I SFD   E+F  I +P  CN    S  L    G LA++ F    Y+  T  I I +W+
Sbjct:   277 AIMSFDVRSEKFDLIKVP--CNFRSFS-KLAKYEGKLAVI-F----YEKKTSGI-IGLWI 327

Query:   347 LKDHYERNEWSK 358
             L+D     EWSK
Sbjct:   328 LEDA-SNGEWSK 338

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 65/237 (27%), Positives = 106/237 (44%)

Query:   169 HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY 228
             HV   V +WNP  R+ L LPK             +++ L     +GYD   G +K+V   
Sbjct:   132 HVLATVIVWNPSMRQFLTLPKPR----------KSWKELTVF--LGYDPIEGKHKVV-CL 178

Query:   229 PVIELSDYKIAVYTLGK-DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTC 287
             P     D +  V TLG    SWR + +    R   +  +G    G +++I++  +    C
Sbjct:   179 PRNRTCD-ECQVLTLGSAQKSWRTVKTKHKHR-STNDTWGRCIKGVVYYIAYVYHTRVWC 236

Query:   288 IFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVT-FPTDDYDGDTEYIWIEIWV 346
             I SF    E+F  I LP++ N+  R   +IN  G LA V    T + DG      I +W+
Sbjct:   237 IMSFHVKSEKFDMIKLPLE-NIY-RDV-MINYEGRLACVDKLYTLNNDG------IRLWI 287

Query:   347 LKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVL 403
             L+D  E+++WS    ++     D     +    +  +  AG ++ + T ++   FVL
Sbjct:   288 LEDA-EKHKWSSKQFLARYVHNDL--RTNTISKLTGVTHAGEFVYIST-QYLKSFVL 340

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 46/150 (30%), Positives = 68/150 (45%)

Query:    41 SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLS 100
             S   P +++  ILLR P K + RFRCVSK WS+I     F    +   T  S  L L   
Sbjct:    24 SSSIPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYF----INLLTTRSPRLLLCFK 79

Query:   101 ANRDGVFPYIYDGHALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNERDT-PIYFVAYG 159
             AN    F ++    ++ Q       +    + +     Y  +++FS E +  P      G
Sbjct:    80 ANEK--F-FV---SSIPQHRQTFETWNKSHSYSQLIDRY--HMEFSEEMNYFPPTESVNG 131

Query:   160 FICFGESSCHVKDHVHLWNPLRREVLRLPK 189
              ICF ES+      + +WNP  R++L LPK
Sbjct:   132 LICFQESA-----RLIVWNPSTRQLLILPK 156

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045039 AT2G04920 "AT2G04920" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 52/212 (24%), Positives = 96/212 (45%)

Query:   114 HALKQSEHALFPYIYDDNNALKPGEYPTNLDFSNER-DTPIYFVAYGFICFGESSCHVKD 172
             H L   ++ + P   + N +    E+ + L   +   ++   ++A  F C G   C  KD
Sbjct:    53 HVLLWKDYTVCPMSINLNFSGSSIEFKSVLSLKDSHYNSEQVYIAKVFHCDGLLLCTTKD 112

Query:   173 H-VHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGY--DSATGTYKIVQ--- 226
             H + +WNP   E         + ++++DY    R     F +GY  + +  +YKI++   
Sbjct:   113 HRLLVWNPCLGETR-------WINFENDYKPYSR-----FSLGYKNNKSCRSYKILRFWT 160

Query:   227 SYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPD-VSYEFGVSAYGDMHWISFDQNNIH 285
             SY        +  +Y     DSWR++   ++L    +  E GVS  G+ +W++ D+    
Sbjct:   161 SYLTPNHIGLRYNIYEF-TTDSWRVLIDKVSLNYFLIESENGVSFKGNTYWLALDEET-- 217

Query:   286 TCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLI 317
               +  FDF  E FK++ LP + N +    S++
Sbjct:   218 NFLLGFDFTMERFKRLCLPSNKNCDTMVLSVV 249

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 53/209 (25%), Positives = 92/209 (44%)

Query:   158 YGFICFGESSCHVK--DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGY 215
             +G +CF     HV     ++LWNP  +   RL       D +    +        +G GY
Sbjct:   117 HGLVCF-----HVDYDKSLYLWNPTIKLQQRLSS----SDLETSDDECVVT----YGFGY 163

Query:   216 DSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISS--SLALRPDVSYEFGVSAYGD 273
             D +   YK+V           +  +Y+  +   WR  +S  S  +  D S   G+   G 
Sbjct:   164 DESEDDYKVVALLQQRHQVKIETKIYST-RQKLWRSNTSFPSGVVVADKSRS-GIYINGT 221

Query:   274 MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDY 333
             ++W +   ++  T I S+D +++EFK++  P+ C     + +L +LRG L++V +     
Sbjct:   222 LNWAATSSSSSWT-IISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCY-CKGA 279

Query:   334 DGDTEYIWIEIWVLKDHYERNEWSKAYKI 362
             + D       +WV+K+  E   WSK   I
Sbjct:   280 NAD-------VWVMKEFGEVYSWSKLLSI 301

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 54/212 (25%), Positives = 91/212 (42%)

Query:   159 GFICFGESSCHVKDHVHLWNPLRREVLRLPK-LGYYCDYQHDYYDAYRGLRGHFGMGYDS 217
             G ICF E     +D + + NP   ++ R P  L + C ++   +  +       G G D 
Sbjct:   105 GVICFPE-----QDWIIVLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWVMGFGRDK 159

Query:   218 ATGTYKIVQ-SYPV--IELSDYKIAVYTLGKDDS-WRIISSSLALRPDVSYEFGVSAYGD 273
               G YK+V+ S+    +   +  +    L  D   WR +S    +  +V  +  V   G 
Sbjct:   160 VNGRYKVVRMSFAFWRVRQEEPVVECGVLDVDTGEWRKLSPPPYV-VNVGSK-SVCVNGS 217

Query:   274 MHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDY 333
             ++W+      ++  I + D +KEEF K+  P+          ++NL   L L        
Sbjct:   218 IYWLHIQ--TVYR-ILALDLHKEEFHKV--PVPPTQITVDTQMVNLEDRLVLAITRVSP- 271

Query:   334 DGDTEYIWIEIWVLKDHYERNEWSKAYKISTD 365
                 E+I +E+W + D Y + +WSK Y IS D
Sbjct:   272 ----EWI-LEVWGM-DTY-KEKWSKTYSISLD 296

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202160 AT1G19160 "AT1G19160" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 54/207 (26%), Positives = 94/207 (45%)

Query:   161 ICFGESSCHVKDHVHLW--NPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSA 218
             +C     C V+    LW  NP+ +++   P     C  +  +   Y        MGYD  
Sbjct:    90 VCVNGLIC-VEHMFRLWICNPVTKKITLFPD----CGPRKQFTTWY--------MGYDPI 136

Query:   219 TGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALR-PDVSYEFGVSAYGDMHWI 277
                YK++       ++ Y + V+T G + SWR+I +      P+     GV  +G +++ 
Sbjct:   137 NYQYKVLYLSREHLIAPYIVEVFTFGDEGSWRMIEADENFHSPETR---GVCTHGVLYYG 193

Query:   278 SFDQNNIHTCIFSFDFNKEEFKK-IDLPID-CNMEP---RSPSLINLRGNLALV-TFPTD 331
             ++  +     I  FD   E+F K I++P + C++        +L++ +G L L+ T  T 
Sbjct:   194 AYTGDGAK--IVRFDVRTEKFGKFIEMPAEACSIHGVYLGLYTLLDYQGKLGLLATQATS 251

Query:   332 DYDGDTEYIWIEIWVLKDHYERNEWSK 358
              YD         +WVL+D  E++EWSK
Sbjct:   252 TYD---------LWVLEDA-EKHEWSK 268

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2029569 AT1G31080 "AT1G31080" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 45/150 (30%), Positives = 75/150 (50%)

Query:   240 VYTLGKDD-SWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF 298
             + TLG ++  WR I    +  P    E  +   G +++IS    + ++ I  FD   E+F
Sbjct:   108 ILTLGTENVRWREIICPFSYDPP--REKPICINGVLYYISV--GSYYSLIGCFDVRSEKF 163

Query:   299 KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK 358
             K + L  DC     S  LIN +G L  VT   +DY G    + + +WVL+D  E+ EW++
Sbjct:   164 KFLYLSPDC-FPNWSRKLINYKGKLG-VTI-MEDYHGGFP-LKLRMWVLED-VEKEEWTR 218

Query:   359 -AYKISTDQDGDRIEEEDFFQYVCSIVVAG 387
              AY +  +   +++E+ D+  YV     +G
Sbjct:   219 YAYTLRPE---NKVEDNDYV-YVVGATASG 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203736 AT1G47340 "AT1G47340" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 69/237 (29%), Positives = 105/237 (44%)

Query:   200 YYDAYRGLRGHFGMGYDSATGTYKIV-QSYPVIELSDYKIAVYTLGKDD-SWRIISSSLA 257
             + + YR     FG  +D     YK++  +YP     D+   V T G  + SWR I  S+ 
Sbjct:   183 FLERYRKAFSFFG--FDPIEKQYKVLFMAYP--SGPDHH-TVLTFGTGEMSWRKIECSV- 236

Query:   258 LRPDVSYEFGVSAYGDMHWISFDQNNIHTC--IFSFDFNKEEFKKIDLPIDCNMEPRSPS 315
              + D+  + G+   G M+++  D +   T   +  FD   E F  I     C +      
Sbjct:   237 -KHDIVSD-GICINGVMYYLG-DTSEFMTAFVVVCFDVRSETFSFIYPGSYCEV------ 287

Query:   316 LINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK-AYKISTDQDGDRIEEE 374
              IN +G L LV F  DDY  D   I + +WVL+D  E+ EWSK AYK+         ++E
Sbjct:   288 -INYKGKLGLV-F-CDDYTDDA--IELRLWVLEDK-EKIEWSKYAYKL---------KDE 332

Query:   375 DFFQYVCSIV---VAGRWMV-LDTFRHDNKFVLDLENDDCHLRICPVPKNFD-HHDT 426
              F  +  SIV    AG  ++ +  F     F +   N + +   C   + F+ HH T
Sbjct:   333 KFSAHYVSIVGVSAAGEIVLSMADFTSKQPFYVFYYNPERNTLQCTEIQGFEEHHGT 389

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	3e-22
pfam08268	125	pfam08268, FBA_3, F-box associated domain	1e-08
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-06
pfam00646	48	pfam00646, F-box, F-box domain	2e-04

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 94.7 bits (236), Expect = 3e-22
 Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 28/208 (13%)

Query: 159 GFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSA 218
           G ICF      V     +WNP   +   LP        +             + +GYD  
Sbjct: 6   GLICFSYGKRLV-----VWNPSTGQSRWLPTPKSRRSNKE---------SDTYFLGYDPI 51

Query: 219 TGTYKIVQ-SYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWI 277
              YK++  S      +  +  VYTLG + SWR I  S           GV   G ++++
Sbjct: 52  EKQYKVLCFSDRSGNRNQSEHQVYTLGSN-SWRTIECSPP--HHPLKSRGVCINGVLYYL 108

Query: 278 SFDQN-NIHTCIFSFDFNKEEFKK-IDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDG 335
           ++    N    I SFD + E FK+ I LP   +      SLIN +G LA++    D  + 
Sbjct: 109 AYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNN- 167

Query: 336 DTEYIWIEIWVLKDHYERNEWSKAYKIS 363
                  ++WVL D   + EWSK + + 
Sbjct: 168 ------FDLWVLND-AGKQEWSKLFTVP 188

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 10/72 (13%)

Query: 287 CIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWV 346
            I SFD   E+F  I LP+       S +LIN +G LALV   T           IE+WV
Sbjct: 21  VIVSFDVRSEKFSFIKLPVPL-ANLLSSTLINYKGKLALV-SHTSLGG-------IELWV 71

Query: 347 LKDHYERNEWSK 358
           L+D  E++EWSK
Sbjct: 72  LEDA-EKHEWSK 82

Length = 125

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 44 FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF 80
           P  I+  IL +   K LLR R VS+ W ++IDSH F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 43 EFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF 80
          + P +++  IL R   K LLR   VSK W +++DS   
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.69
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.66
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.35
PHA02713	557	hypothetical protein; Provisional	98.99
PHA03098	534	kelch-like protein; Provisional	98.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.77
PHA02713	557	hypothetical protein; Provisional	98.76
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.75
PHA02790	480	Kelch-like protein; Provisional	98.73
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.65
PLN02193	470	nitrile-specifier protein	98.64
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.63
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.59
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.55
PLN02153	341	epithiospecifier protein	98.52
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.44
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.41
PHA03098	534	kelch-like protein; Provisional	98.33
PHA02790	480	Kelch-like protein; Provisional	98.32
PLN02193	470	nitrile-specifier protein	98.25
PLN02153	341	epithiospecifier protein	98.21
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.05
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.99
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.61
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.59
KOG1230	521	consensus Protein containing repeated kelch motifs	97.35
KOG4693	392	consensus Uncharacterized conserved protein, conta	96.63
KOG4693	392	consensus Uncharacterized conserved protein, conta	96.42
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.36
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.34
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.67
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	95.59
smart00284	255	OLF Olfactomedin-like domains.	95.35
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	94.23
PF13964	50	Kelch_6: Kelch motif	93.03
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	92.77
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	92.05
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	91.58
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.62
PF13964	50	Kelch_6: Kelch motif	89.98
KOG1230	521	consensus Protein containing repeated kelch motifs	89.48
smart00612	47	Kelch Kelch domain.	85.91
KOG4341	483	consensus F-box protein containing LRR [General fu	84.67
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	84.35
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	84.01
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	82.71
KOG3545	249	consensus Olfactomedin and related extracellular m	82.12
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	81.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	80.24

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=7.6e-35  Score=266.85  Aligned_cols=225  Identities=26%  Similarity=0.385  Sum_probs=161.7

Q ss_pred             EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecc-cc
Q 035860          154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPV-IE  232 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~-~~  232 (440)
                      ++|||||||+...     ..++||||+||+++.||+++......        ... .++||||+.+++||||++... ..
T Consensus         1 ~~sCnGLlc~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~--------~~~-~~~~G~d~~~~~YKVv~~~~~~~~   66 (230)
T TIGR01640         1 VVPCDGLICFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNK--------ESD-TYFLGYDPIEKQYKVLCFSDRSGN   66 (230)
T ss_pred             CcccceEEEEecC-----CcEEEECCCCCCEEecCCCCCccccc--------ccc-eEEEeecccCCcEEEEEEEeecCC
Confidence            4799999999865     68999999999999999765421111        001 359999999999999999622 22


Q ss_pred             CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEE-EeeCCCCCCCC
Q 035860          233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFK-KIDLPIDCNME  310 (440)
Q Consensus       233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~-~i~lP~~~~~~  310 (440)
                      .....++||+++ +++||.+...+......  ..+|++||++||++...... ...|++||+++|+|+ .+++|......
T Consensus        67 ~~~~~~~Vys~~-~~~Wr~~~~~~~~~~~~--~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~  143 (230)
T TIGR01640        67 RNQSEHQVYTLG-SNSWRTIECSPPHHPLK--SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDS  143 (230)
T ss_pred             CCCccEEEEEeC-CCCccccccCCCCcccc--CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccc
Confidence            356789999999 99999998544322212  23999999999999765422 138999999999999 58999754322


Q ss_pred             CCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEE
Q 035860          311 PRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWM  390 (440)
Q Consensus       311 ~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i  390 (440)
                      .....|++++|+||++....       ....++||+|+++++ ..|+|+++|+..........   ..+.+.+ .+|+ |
T Consensus       144 ~~~~~L~~~~G~L~~v~~~~-------~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~---~~~~~~~-~~g~-I  210 (230)
T TIGR01640       144 VDYLSLINYKGKLAVLKQKK-------DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDD---NFLSGFT-DKGE-I  210 (230)
T ss_pred             ccceEEEEECCEEEEEEecC-------CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhh---eeEeEEe-eCCE-E
Confidence            23568999999999999764       124599999999864 46999999997544433221   2344443 4565 5


Q ss_pred             EEeecCC-Cc-eEEEECCCC
Q 035860          391 VLDTFRH-DN-KFVLDLEND  408 (440)
Q Consensus       391 ~l~~~~~-~~-~~~yd~~~~  408 (440)
                      ++..... .. +++||++++
T Consensus       211 ~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       211 VLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEEeCCCCceEEEEEeccCC
Confidence            5533321 23 899999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.69  E-value=1.2e-15  Score=131.75  Aligned_cols=155  Identities=23%  Similarity=0.296  Sum_probs=99.3

Q ss_pred             cEEEcCeEEEEEecCCCCc-eEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEe-CCeEEEEEcCCCCCCCCCCccEEE
Q 035860          267 GVSAYGDMHWISFDQNNIH-TCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINL-RGNLALVTFPTDDYDGDTEYIWIE  343 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~~~-~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~~l~  343 (440)
                      ||++||++||++....... ..|++||+++|+| ..+++|...........|.+. +|+||++....       ....++
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~-------~~~~~~   73 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD-------ETSKIE   73 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc-------CCccEE
Confidence            6999999999998876542 3799999999999 888999866522356778655 57999997643       235699


Q ss_pred             EEEeeccC-CCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEE-eecCC----CceEEEECCCCcEEEEEecc
Q 035860          344 IWVLKDHY-ERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVL-DTFRH----DNKFVLDLENDDCHLRICPV  417 (440)
Q Consensus       344 IW~l~~~g-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l-~~~~~----~~~~~yd~~~~~~~~~~~~~  417 (440)
                      ||+|+++| +..+|+|.++|+..........-  ......+..+++.++. .....    +.+.+|+ +++.......+.
T Consensus        74 IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~--~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~  150 (164)
T PF07734_consen   74 IWVMKKYGYGKESWTKLFTIDLPPLPSLFFHF--RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIED  150 (164)
T ss_pred             EEEEeeeccCcceEEEEEEEecCCCCCccccc--ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccccc
Confidence            99999764 37899999999976665432210  0122223223333332 21111    3456776 555543211111


Q ss_pred             CCcccccceeecccc
Q 035860          418 PKNFDHHDTIRFTGS  432 (440)
Q Consensus       418 ~~~~~~~~~~~y~~S  432 (440)
                      .. ..+..+..|+||
T Consensus       151 ~~-~~~~~~~~YvpS  164 (164)
T PF07734_consen  151 KS-SCWPSICNYVPS  164 (164)
T ss_pred             CC-CCCCCEEEECCC
Confidence            12 345567789987

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.66  E-value=2.2e-15  Score=124.65  Aligned_cols=118  Identities=30%  Similarity=0.508  Sum_probs=82.8

Q ss_pred             cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEE
Q 035860          267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWV  346 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~  346 (440)
                      |+++||++||++.........|++||+++|+|+.|++|...........|++++|+||++.....     .....++||+
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~-----~~~~~~~iWv   75 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQ-----GEPDSIDIWV   75 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCC-----CCcceEEEEE
Confidence            68999999999998322247999999999999999999222222277899999999999997651     1135799999


Q ss_pred             eeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEE
Q 035860          347 LKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVL  392 (440)
Q Consensus       347 l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l  392 (440)
                      |+|++ +++|++.+.+-.......... ..+.+. ++..+|+.|+.
T Consensus        76 LeD~~-k~~Wsk~~~~lp~~~~~~~~~-~~~~~~-g~~~~Geiv~~  118 (129)
T PF08268_consen   76 LEDYE-KQEWSKKHIVLPPSWQHFVHD-CDFSFV-GVTDTGEIVFA  118 (129)
T ss_pred             eeccc-cceEEEEEEECChHHhcccCC-cEEEEE-EEcCCCEEEEE
Confidence            99985 589999866433322222111 222333 44567886666

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.35  E-value=7e-11  Score=112.56  Aligned_cols=319  Identities=11%  Similarity=0.081  Sum_probs=153.6

Q ss_pred             CCCCcHHHHHHHHhcCC-cccceeeeccccchhhhhCChhHHHHHHhhhccCCCccccccccCCCCCcceeecCCcccCC
Q 035860           41 SMEFPSNIIYNILLRQP-VKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATEESHHLPLNLSANRDGVFPYIYDGHALKQS  119 (440)
Q Consensus        41 ~~~LP~Dll~eIL~RLP-~~sL~R~r~VCK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (440)
                      +++||+|||..|..||| ..+++|||+||++||+.+....   +. ...+++++ +  ++.. ......+. +   +++.
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~-~--~~~~-~~~~~~~~-~---~~~~   71 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPL-I--LFNP-INPSETLT-D---DRSY   71 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccc-c--ccCc-ccCCCCcc-c---cccc
Confidence            47999999999999998 6799999999999999877410   00 00011111 1  1111 00000000 0   0000


Q ss_pred             cccccccccCCCCCCCCCcCCCCCCCCCCCCc-cEEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCC
Q 035860          120 EHALFPYIYDDNNALKPGEYPTNLDFSNERDT-PIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQH  198 (440)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~  198 (440)
                      +            ......+... .   ..++ ..-++..|.|.-...+ .....+.+.||+++.-..+|+.......  
T Consensus        72 ~------------~~~~~~ls~~-~---~~r~~~~~~~~~~WLik~~~~-~~~~~~~Ll~PLsr~~~~~~~~~lnll~--  132 (373)
T PLN03215         72 I------------SRPGAFLSRA-A---FFRVTLSSSPSKGWLIKSDMD-VNSGRFHLLNPLSRLPLRHSSESVDLLE--  132 (373)
T ss_pred             c------------ccccceeeee-E---EEEeecCCCCCCCcEEEEecc-ccCCccEecCccccCccCCCCccceeee--
Confidence            0            0000000000 0   0000 0113568888765431 1357899999999997777753221100  


Q ss_pred             CcccccccccceEEE-eeeCC---CCCE--EEEEEeccccC-CcceEEEEEeCC-----CCCcceeccCCcccCCCCCcc
Q 035860          199 DYYDAYRGLRGHFGM-GYDSA---TGTY--KIVQSYPVIEL-SDYKIAVYTLGK-----DDSWRIISSSLALRPDVSYEF  266 (440)
Q Consensus       199 ~~~~~~~~~~~~~~~-g~d~~---~~~y--kVv~~~~~~~~-~~~~~~Vyss~~-----t~~W~~~~~~p~~~~~~~~~~  266 (440)
                        |....... .+.+ +.+..   ...|  |++.....++. ....+-|+.-+.     .++|..++....  .   ...
T Consensus       133 --f~v~ei~~-~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~--~---~~D  204 (373)
T PLN03215        133 --FTVSEIRE-AYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY--H---FSD  204 (373)
T ss_pred             --eEEEEccc-eEEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc--e---eeE
Confidence              00000000 0011 11100   0012  11111111111 112233332221     456777653222  1   223


Q ss_pred             cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCC--CCC-CC-CCCCEEEEeCCeEEEEEcCCC-CCC-------
Q 035860          267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPI--DCN-ME-PRSPSLINLRGNLALVTFPTD-DYD-------  334 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~--~~~-~~-~~~~~L~~~~G~L~lv~~~~~-~~~-------  334 (440)
                      -|+.+|.+|-+...+     .+.++|.+-+ ...+..+.  ... .. .....|+|+.|.|.||..... ...       
T Consensus       205 Ii~~kGkfYAvD~~G-----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~  278 (373)
T PLN03215        205 IIVHKGQTYALDSIG-----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGF  278 (373)
T ss_pred             EEEECCEEEEEcCCC-----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccc
Confidence            789999999985544     6777774321 22222111  011 00 144679999999999987421 000       


Q ss_pred             CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE--EEcCcEEEEeecCCCceEEEECCCCcE
Q 035860          335 GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI--VVAGRWMVLDTFRHDNKFVLDLENDDC  410 (440)
Q Consensus       335 ~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~g~~i~l~~~~~~~~~~yd~~~~~~  410 (440)
                      ....+..++|+.++..  ...|+++.+++-..+.  +.....+......  ...++.||+...  ...-+||++.++-
T Consensus       279 ~~~~t~~f~VfklD~~--~~~WveV~sLgd~aLF--lG~~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~  350 (373)
T PLN03215        279 EYSRTVGFKVYKFDDE--LAKWMEVKTLGDNAFV--MATDTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNG  350 (373)
T ss_pred             cccceeEEEEEEEcCC--CCcEEEecccCCeEEE--EECCccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCc
Confidence            0012357899999853  5789999888643221  1111111111000  125789999654  3567999999983

>PHA02713 hypothetical protein; Provisional

Probab=98.99  E-value=6.8e-08  Score=99.59  Aligned_cols=213  Identities=11%  Similarity=0.044  Sum_probs=131.1

Q ss_pred             EeeeccEEEeeecCC---CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c
Q 035860          154 YFVAYGFICFGESSC---HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P  229 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~  229 (440)
                      ++..+|-|.+.++..   .....+..+||.+++|..+|+++.....             ..+..++.     ||.+++ .
T Consensus       299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-------------~~~~~~~g-----~IYviGG~  360 (557)
T PHA02713        299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-------------FSLAVIDD-----TIYAIGGQ  360 (557)
T ss_pred             EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-------------eeEEEECC-----EEEEECCc
Confidence            455566665544311   1235688999999999999988754211             11222222     566664 2


Q ss_pred             cccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCC-------------------CceEEEE
Q 035860          230 VIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNN-------------------IHTCIFS  290 (440)
Q Consensus       230 ~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~Il~  290 (440)
                      .+......+++|+.. ++.|..++.+|......   ..+.++|.+|-+......                   ....+.+
T Consensus       361 ~~~~~~~sve~Ydp~-~~~W~~~~~mp~~r~~~---~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~  436 (557)
T PHA02713        361 NGTNVERTIECYTMG-DDKWKMLPDMPIALSSY---GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR  436 (557)
T ss_pred             CCCCCCceEEEEECC-CCeEEECCCCCcccccc---cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence            222234569999999 99999998887643322   267899999998764311                   0146899


Q ss_pred             EEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEE-EEEEeeccCCC-cccceeEEeecCCC
Q 035860          291 FDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWI-EIWVLKDHYER-NEWSKAYKISTDQD  367 (440)
Q Consensus       291 fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l-~IW~l~~~g~~-~~W~~~~~i~~~~~  367 (440)
                      ||+.+++|..+ ++|...    ....+++++|+|++++....      ..... .+...+-  .. ..|+.+..|+....
T Consensus       437 YDP~td~W~~v~~m~~~r----~~~~~~~~~~~IYv~GG~~~------~~~~~~~ve~Ydp--~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        437 YDTVNNIWETLPNFWTGT----IRPGVVSHKDDIYVVCDIKD------EKNVKTCIFRYNT--NTYNGWELITTTESRLS  504 (557)
T ss_pred             ECCCCCeEeecCCCCccc----ccCcEEEECCEEEEEeCCCC------CCccceeEEEecC--CCCCCeeEccccCcccc
Confidence            99999999987 444432    44568899999999986530      11111 2333332  23 47999887764321


Q ss_pred             CCccccccceeeEEEEEEcCcEEEEeecCC--CceEEEECCCCcEEE
Q 035860          368 GDRIEEEDFFQYVCSIVVAGRWMVLDTFRH--DNKFVLDLENDDCHL  412 (440)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~--~~~~~yd~~~~~~~~  412 (440)
                                  .+++..-|+.||+.-...  ..+-.||+.+++|..
T Consensus       505 ------------~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        505 ------------ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             ------------cceeEEECCEEEEEeeecceeehhhcCcccccccc
Confidence                        112222344576632111  246799999999973

>PHA03098 kelch-like protein; Provisional

Probab=98.92  E-value=2.8e-07  Score=95.29  Aligned_cols=198  Identities=14%  Similarity=0.125  Sum_probs=121.4

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCcc
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W~  250 (440)
                      ..++.+||.|++|..+|+++.....             ......+.     +|..++ ..+......+++|+.. ++.|+
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~-------------~~~~~~~~-----~lyv~GG~~~~~~~~~v~~yd~~-~~~W~  371 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKN-------------PGVTVFNN-----RIYVIGGIYNSISLNTVESWKPG-ESKWR  371 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCccccc-------------ceEEEECC-----EEEEEeCCCCCEecceEEEEcCC-CCcee
Confidence            4789999999999999987644211             10112221     455554 2222334568999999 99999


Q ss_pred             eeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEE
Q 035860          251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVT  327 (440)
Q Consensus       251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~  327 (440)
                      ..+.+|......   .++.++|.+|-+.......  ...+..||+.+++|..+ ++|...    .....+..+|+|++++
T Consensus       372 ~~~~lp~~r~~~---~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~G  444 (534)
T PHA03098        372 EEPPLIFPRYNP---CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIG  444 (534)
T ss_pred             eCCCcCcCCccc---eEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEEC
Confidence            988776533222   2678899999987643221  25789999999999987 445432    3345677899999998


Q ss_pred             cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEE
Q 035860          328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFV  402 (440)
Q Consensus       328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~  402 (440)
                      .....   ......-.+|..+-.  +..|+++..++...         .....+..  +|. |++.-..     .+.+..
T Consensus       445 G~~~~---~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r---------~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~  507 (534)
T PHA03098        445 GISYI---DNIKVYNIVESYNPV--TNKWTELSSLNFPR---------INASLCIF--NNK-IYVVGGDKYEYYINEIEV  507 (534)
T ss_pred             CccCC---CCCcccceEEEecCC--CCceeeCCCCCccc---------ccceEEEE--CCE-EEEEcCCcCCcccceeEE
Confidence            65310   000011236776653  56899875444221         11122322  444 5542111     246789


Q ss_pred             EECCCCcEEE
Q 035860          403 LDLENDDCHL  412 (440)
Q Consensus       403 yd~~~~~~~~  412 (440)
                      ||+++++|..
T Consensus       508 yd~~~~~W~~  517 (534)
T PHA03098        508 YDDKTNTWTL  517 (534)
T ss_pred             EeCCCCEEEe
Confidence            9999999875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.77  E-value=3.7e-07  Score=94.01  Aligned_cols=216  Identities=13%  Similarity=0.052  Sum_probs=140.5

Q ss_pred             ccEEeeeccEEEeeecCC---CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEE
Q 035860          151 TPIYFVAYGFICFGESSC---HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQS  227 (440)
Q Consensus       151 ~~i~~s~~GLlcl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~  227 (440)
                      ..-++..+|.|-+.++..   .....+..+||.|.+|..+|++...+...              +++.    -..+|.++
T Consensus       325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------------~v~~----l~g~iYav  386 (571)
T KOG4441|consen  325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------------GVAV----LDGKLYAV  386 (571)
T ss_pred             cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------------eeEE----ECCEEEEE
Confidence            345777888876665422   23467899999999999999987652111              2221    12356666


Q ss_pred             e-ccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eC
Q 035860          228 Y-PVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DL  303 (440)
Q Consensus       228 ~-~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~l  303 (440)
                      + .++......+|.|+.. ++.|..++.++.... ...  ++.++|.+|-+...+...  -..+-+||+.+++|+.+ ++
T Consensus       387 GG~dg~~~l~svE~YDp~-~~~W~~va~m~~~r~-~~g--v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M  462 (571)
T KOG4441|consen  387 GGFDGEKSLNSVECYDPV-TNKWTPVAPMLTRRS-GHG--VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM  462 (571)
T ss_pred             eccccccccccEEEecCC-CCcccccCCCCccee-eeE--EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc
Confidence            4 3445566679999999 999999998876222 222  778999999998755433  26899999999999987 55


Q ss_pred             CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE
Q 035860          304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI  383 (440)
Q Consensus       304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~  383 (440)
                      +...    ....+++++|+|++++..+.      ....-.|=..+-  ....|+.+..|......          .  ++
T Consensus       463 ~~~R----~~~g~a~~~~~iYvvGG~~~------~~~~~~VE~ydp--~~~~W~~v~~m~~~rs~----------~--g~  518 (571)
T KOG4441|consen  463 NTRR----SGFGVAVLNGKIYVVGGFDG------TSALSSVERYDP--ETNQWTMVAPMTSPRSA----------V--GV  518 (571)
T ss_pred             cccc----ccceEEEECCEEEEECCccC------CCccceEEEEcC--CCCceeEcccCcccccc----------c--cE
Confidence            5433    45569999999999998751      111112222222  34689998655543211          1  11


Q ss_pred             EEcCcEEEEe-----ecCCCceEEEECCCCcEEE
Q 035860          384 VVAGRWMVLD-----TFRHDNKFVLDLENDDCHL  412 (440)
Q Consensus       384 ~~~g~~i~l~-----~~~~~~~~~yd~~~~~~~~  412 (440)
                      ...++.||+.     ...-+.+-.||+++++|..
T Consensus       519 ~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  519 VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             EEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence            1234445542     1122456899999999975

>PHA02713 hypothetical protein; Provisional

Probab=98.76  E-value=7.9e-07  Score=91.75  Aligned_cols=132  Identities=12%  Similarity=0.023  Sum_probs=90.4

Q ss_pred             eEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec-c-ccCCcceEEEEEeCCCCCcc
Q 035860          173 HVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP-V-IELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       173 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-~-~~~~~~~~~Vyss~~t~~W~  250 (440)
                      .+..+||.|++|..+++++.....             ......+.     +|+.++- . +......++.|+.. ++.|.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-------------~~~a~l~~-----~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~  333 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-------------YASAIVDN-----EIIIAGGYNFNNPSLNKVYKINIE-NKIHV  333 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-------------eEEEEECC-----EEEEEcCCCCCCCccceEEEEECC-CCeEe
Confidence            567899999999999887654211             10111221     5666641 1 11224568999999 99999


Q ss_pred             eeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEc
Q 035860          251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTF  328 (440)
Q Consensus       251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~  328 (440)
                      .++.+|......   ..+.++|.+|-+....... ...+-.||+.+.+|..+ ++|...    .....++++|+|++++.
T Consensus       334 ~~~~m~~~R~~~---~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG  406 (557)
T PHA02713        334 ELPPMIKNRCRF---SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGG  406 (557)
T ss_pred             eCCCCcchhhce---eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeC
Confidence            988887533222   2788999999998754222 24689999999999987 555533    34567789999999986


Q ss_pred             CC
Q 035860          329 PT  330 (440)
Q Consensus       329 ~~  330 (440)
                      ..
T Consensus       407 ~~  408 (557)
T PHA02713        407 RT  408 (557)
T ss_pred             CC
Confidence            54

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.75  E-value=3.3e-09  Score=70.78  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=35.5

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHH
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAH   82 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~   82 (440)
                      ..||+|++.+||..||+++++++..|||+|+.++.++.+.+
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            57999999999999999999999999999999999875443

>PHA02790 Kelch-like protein; Provisional

Probab=98.73  E-value=1.8e-06  Score=87.77  Aligned_cols=184  Identities=14%  Similarity=0.055  Sum_probs=115.6

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcce
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRI  251 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~  251 (440)
                      ..+..+||.+++|..+|+++.....             ..+...+.     +|..++-.  .....++.|+.. ++.|..
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~-------------~~~v~~~~-----~iYviGG~--~~~~sve~ydp~-~n~W~~  345 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLY-------------ASGVPANN-----KLYVVGGL--PNPTSVERWFHG-DAAWVN  345 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhc-------------ceEEEECC-----EEEEECCc--CCCCceEEEECC-CCeEEE
Confidence            4577899999999999988654211             10112221     56666411  122458999999 999999


Q ss_pred             eccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEee-CCCCCCCCCCCCEEEEeCCeEEEEEcCC
Q 035860          252 ISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKID-LPIDCNMEPRSPSLINLRGNLALVTFPT  330 (440)
Q Consensus       252 ~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~~G~L~lv~~~~  330 (440)
                      ++.+|......   .++.++|.+|-+....... ..+-.||+.+++|..++ +|...    .....++.+|+|++++.. 
T Consensus       346 ~~~l~~~r~~~---~~~~~~g~IYviGG~~~~~-~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~~~~~IYv~GG~-  416 (480)
T PHA02790        346 MPSLLKPRCNP---AVASINNVIYVIGGHSETD-TTTEYLLPNHDQWQFGPSTYYPH----YKSCALVFGRRLFLVGRN-  416 (480)
T ss_pred             CCCCCCCCccc---EEEEECCEEEEecCcCCCC-ccEEEEeCCCCEEEeCCCCCCcc----ccceEEEECCEEEEECCc-
Confidence            98887533222   2788999999997754221 46788999999999874 33322    345677899999999832 


Q ss_pred             CCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC-----CCceEEEEC
Q 035860          331 DDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-----HDNKFVLDL  405 (440)
Q Consensus       331 ~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~yd~  405 (440)
                                 .++.-.    ....|+.+..|+.....         ...+   .-++.||+.-..     .+.+-.||+
T Consensus       417 -----------~e~ydp----~~~~W~~~~~m~~~r~~---------~~~~---v~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        417 -----------AEFYCE----SSNTWTLIDDPIYPRDN---------PELI---IVDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             -----------eEEecC----CCCcEeEcCCCCCCccc---------cEEE---EECCEEEEECCcCCCcccceEEEEEC
Confidence                       222211    24689987655432110         0111   233446663111     135789999


Q ss_pred             CCCcEEE
Q 035860          406 ENDDCHL  412 (440)
Q Consensus       406 ~~~~~~~  412 (440)
                      ++++|..
T Consensus       470 ~~~~W~~  476 (480)
T PHA02790        470 RTYSWNI  476 (480)
T ss_pred             CCCeEEe
Confidence            9999863

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.65  E-value=1.6e-05  Score=76.59  Aligned_cols=157  Identities=11%  Similarity=0.107  Sum_probs=95.9

Q ss_pred             eEEEE-ccccc-ccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCc
Q 035860          173 HVHLW-NPLRR-EVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSW  249 (440)
Q Consensus       173 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W  249 (440)
                      .+++. +|..+ +|..+++++......            . +..++.     +|+.++ ..+......++.|+.. ++.|
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~------------~-~~~~~~-----~lyviGG~~~~~~~~~v~~~d~~-~~~w  100 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYG------------A-SVSVEN-----GIYYIGGSNSSERFSSVYRITLD-ESKE  100 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccce------------E-EEEECC-----EEEEEcCCCCCCCceeEEEEEEc-CCce
Confidence            45655 45433 688887665442111            1 222221     466654 2222234578899999 9988


Q ss_pred             ----ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEee-CCCCCCCCCCCCEEEEeCCeE
Q 035860          250 ----RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKID-LPIDCNMEPRSPSLINLRGNL  323 (440)
Q Consensus       250 ----~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~~G~L  323 (440)
                          +.++.+|......   .++.++|.+|-+....... ...+.+||+.+++|..++ +|....   .....+..+|+|
T Consensus       101 ~~~~~~~~~lp~~~~~~---~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r---~~~~~~~~~~~i  174 (323)
T TIGR03548       101 ELICETIGNLPFTFENG---SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR---VQPVCVKLQNEL  174 (323)
T ss_pred             eeeeeEcCCCCcCccCc---eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC---CcceEEEECCEE
Confidence                5566666532221   2678899999997643221 257899999999999884 664221   344567889999


Q ss_pred             EEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEee
Q 035860          324 ALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS  363 (440)
Q Consensus       324 ~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~  363 (440)
                      +++....       .....++|..+-.  +.+|+++..++
T Consensus       175 Yv~GG~~-------~~~~~~~~~yd~~--~~~W~~~~~~~  205 (323)
T TIGR03548       175 YVFGGGS-------NIAYTDGYKYSPK--KNQWQKVADPT  205 (323)
T ss_pred             EEEcCCC-------CccccceEEEecC--CCeeEECCCCC
Confidence            9998654       1123456776642  46899876553

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=98.64  E-value=7.2e-06  Score=83.10  Aligned_cols=205  Identities=11%  Similarity=0.050  Sum_probs=119.8

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCcc
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W~  250 (440)
                      ..++++||.+.+|..+|+........   .      .......++.     +++.+. .........+++|+.. ++.|+
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~---~------~~~~~v~~~~-----~lYvfGG~~~~~~~ndv~~yD~~-t~~W~  257 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLS---C------LGVRMVSIGS-----TLYVFGGRDASRQYNGFYSFDTT-TNEWK  257 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCc---c------cceEEEEECC-----EEEEECCCCCCCCCccEEEEECC-CCEEE
Confidence            46899999999999887542211000   0      0111222221     455553 2222234568999999 99999


Q ss_pred             eeccC---CcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEE
Q 035860          251 IISSS---LALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALV  326 (440)
Q Consensus       251 ~~~~~---p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv  326 (440)
                      .+..+   |......   ..+.+++.+|.+....... ...+.+||+.+.+|..++.|...........++..+|+++++
T Consensus       258 ~l~~~~~~P~~R~~h---~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi  334 (470)
T PLN02193        258 LLTPVEEGPTPRSFH---SMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV  334 (470)
T ss_pred             EcCcCCCCCCCccce---EEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence            98755   3221111   2567899999887643221 246889999999999886553322222445677889999998


Q ss_pred             EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec-----------
Q 035860          327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF-----------  395 (440)
Q Consensus       327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~-----------  395 (440)
                      ....       ....-++|+++-.  +..|+++..+...+..      +.  ..+.+..++. |++.-.           
T Consensus       335 GG~~-------g~~~~dv~~yD~~--t~~W~~~~~~g~~P~~------R~--~~~~~~~~~~-iyv~GG~~~~~~~~~~~  396 (470)
T PLN02193        335 YGFN-------GCEVDDVHYYDPV--QDKWTQVETFGVRPSE------RS--VFASAAVGKH-IVIFGGEIAMDPLAHVG  396 (470)
T ss_pred             ECCC-------CCccCceEEEECC--CCEEEEeccCCCCCCC------cc--eeEEEEECCE-EEEECCccCCccccccC
Confidence            8643       1123567888753  5689998655322111      00  1111222444 544211           


Q ss_pred             ---CCCceEEEECCCCcEEE
Q 035860          396 ---RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       396 ---~~~~~~~yd~~~~~~~~  412 (440)
                         ..+.+..||+.+++|..
T Consensus       397 ~~~~~ndv~~~D~~t~~W~~  416 (470)
T PLN02193        397 PGQLTDGTFALDTETLQWER  416 (470)
T ss_pred             ccceeccEEEEEcCcCEEEE
Confidence               11357999999999874

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.63  E-value=1.5e-08  Score=68.01  Aligned_cols=43  Identities=33%  Similarity=0.489  Sum_probs=36.9

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHH
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAH   84 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~   84 (440)
                      ..||+|++.+||.+|+++++++++.|||+|++++.++.+...+
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            5799999999999999999999999999999999999886654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.59  E-value=1.2e-08  Score=65.87  Aligned_cols=39  Identities=46%  Similarity=0.788  Sum_probs=36.7

Q ss_pred             CcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHH
Q 035860           44 FPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAH   82 (440)
Q Consensus        44 LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~   82 (440)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999987754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.55  E-value=3.8e-05  Score=74.79  Aligned_cols=181  Identities=12%  Similarity=0.054  Sum_probs=105.5

Q ss_pred             EeeeccEEEeeecCCCcceeEEEEc--ccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860          154 YFVAYGFICFGESSCHVKDHVHLWN--PLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV  230 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~~~~~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~  230 (440)
                      .+..++-|.+....  ....+++.+  |.+++|..+|+++......            ......+.     +|.+++ ..
T Consensus        13 ~~~~~~~vyv~GG~--~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~------------~~~~~~~~-----~iYv~GG~~   73 (346)
T TIGR03547        13 GAIIGDKVYVGLGS--AGTSWYKLDLKKPSKGWQKIADFPGGPRNQ------------AVAAAIDG-----KLYVFGGIG   73 (346)
T ss_pred             EEEECCEEEEEccc--cCCeeEEEECCCCCCCceECCCCCCCCccc------------ceEEEECC-----EEEEEeCCC
Confidence            33455655554331  124577777  4788899999876321111            10112221     566664 11


Q ss_pred             c-c-----CCcceEEEEEeCCCCCcceecc-CCcccCCCCCcccE-EEcCeEEEEEecCCCC------------------
Q 035860          231 I-E-----LSDYKIAVYTLGKDDSWRIISS-SLALRPDVSYEFGV-SAYGDMHWISFDQNNI------------------  284 (440)
Q Consensus       231 ~-~-----~~~~~~~Vyss~~t~~W~~~~~-~p~~~~~~~~~~~v-~~~G~lywl~~~~~~~------------------  284 (440)
                      . .     .....++.|+.. ++.|+.+.. +|... .. . .++ .++|.||-+.......                  
T Consensus        74 ~~~~~~~~~~~~~v~~Yd~~-~~~W~~~~~~~p~~~-~~-~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  149 (346)
T TIGR03547        74 KANSEGSPQVFDDVYRYDPK-KNSWQKLDTRSPVGL-LG-A-SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK  149 (346)
T ss_pred             CCCCCCcceecccEEEEECC-CCEEecCCCCCCCcc-cc-e-eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence            1 0     023468999999 999999873 22211 11 1 133 5799999886543110                  


Q ss_pred             -----------------ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEE
Q 035860          285 -----------------HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWV  346 (440)
Q Consensus       285 -----------------~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~  346 (440)
                                       ...+..||+.+.+|..+ ++|....   ....++..+|+|+++.....     ......++|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~  221 (346)
T TIGR03547       150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIK-----PGLRTAEVKQ  221 (346)
T ss_pred             hhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC---CCceEEEECCEEEEEeeeeC-----CCccchheEE
Confidence                             13689999999999988 4553211   34567888999999986531     1123456676


Q ss_pred             eeccCCCcccceeEEeecC
Q 035860          347 LKDHYERNEWSKAYKISTD  365 (440)
Q Consensus       347 l~~~g~~~~W~~~~~i~~~  365 (440)
                      .+-..+...|+++..|+..
T Consensus       222 y~~~~~~~~W~~~~~m~~~  240 (346)
T TIGR03547       222 YLFTGGKLEWNKLPPLPPP  240 (346)
T ss_pred             EEecCCCceeeecCCCCCC
Confidence            5422234589988777643

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=98.52  E-value=9.5e-06  Score=78.85  Aligned_cols=189  Identities=9%  Similarity=0.033  Sum_probs=105.2

Q ss_pred             EeeeccEEEeeecCC----CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-
Q 035860          154 YFVAYGFICFGESSC----HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-  228 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~----~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-  228 (440)
                      +...++.|.+.....    .....++++||.+.+|..+|+........   .      .++....++.     +|+.++ 
T Consensus        28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~---~------~~~~~~~~~~-----~iyv~GG   93 (341)
T PLN02153         28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRIS---C------LGVRMVAVGT-----KLYIFGG   93 (341)
T ss_pred             EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCc---c------CceEEEEECC-----EEEEECC
Confidence            344566665543311    01247899999999999988654221110   0      0111112221     566664 


Q ss_pred             ccccCCcceEEEEEeCCCCCcceeccC-----CcccCCCCCcccEEEcCeEEEEEecCCCC-------ceEEEEEEcCCc
Q 035860          229 PVIELSDYKIAVYTLGKDDSWRIISSS-----LALRPDVSYEFGVSAYGDMHWISFDQNNI-------HTCIFSFDFNKE  296 (440)
Q Consensus       229 ~~~~~~~~~~~Vyss~~t~~W~~~~~~-----p~~~~~~~~~~~v~~~G~lywl~~~~~~~-------~~~Il~fD~~~e  296 (440)
                      ..+......+++|+.. ++.|+.++.+     |.... .  ...+..+|.+|-+.......       ...+.+||+.+.
T Consensus        94 ~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~p~~R~-~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153         94 RDEKREFSDFYSYDTV-KNEWTFLTKLDEEGGPEART-F--HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             CCCCCccCcEEEEECC-CCEEEEeccCCCCCCCCCce-e--eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            2222233468999999 9999988755     22111 1  12677899999886643211       136889999999


Q ss_pred             cEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCC--CCCCCccEEEEEEeeccCCCcccceeEEe
Q 035860          297 EFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDY--DGDTEYIWIEIWVLKDHYERNEWSKAYKI  362 (440)
Q Consensus       297 ~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~--~~~~~~~~l~IW~l~~~g~~~~W~~~~~i  362 (440)
                      +|..++.+...........++.++|+|+++.......  ........-+||+++-.  ...|+++...
T Consensus       170 ~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~  235 (341)
T PLN02153        170 KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETT  235 (341)
T ss_pred             eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC--CCcEEecccc
Confidence            9998754321111113445778899999987532000  00000112246666542  4679988644

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.44  E-value=6.2e-05  Score=74.13  Aligned_cols=181  Identities=12%  Similarity=0.018  Sum_probs=105.6

Q ss_pred             EEeeeccEEEeeecCCCcceeEEEEccc--ccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c
Q 035860          153 IYFVAYGFICFGESSCHVKDHVHLWNPL--RREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P  229 (440)
Q Consensus       153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~  229 (440)
                      ..+..++-|.+....  ....+++.++.  +++|..+|+++......            ......+   +  +|..++ .
T Consensus        33 ~~~~~~~~iyv~gG~--~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~------------~~~v~~~---~--~IYV~GG~   93 (376)
T PRK14131         33 TGAIDNNTVYVGLGS--AGTSWYKLDLNAPSKGWTKIAAFPGGPREQ------------AVAAFID---G--KLYVFGGI   93 (376)
T ss_pred             eEEEECCEEEEEeCC--CCCeEEEEECCCCCCCeEECCcCCCCCccc------------ceEEEEC---C--EEEEEcCC
Confidence            345567766654431  12456777764  57899998765321111            1011222   1  455553 1


Q ss_pred             cc-c-----CCcceEEEEEeCCCCCcceeccC-CcccCCCCCcccEE-EcCeEEEEEecCCC------------------
Q 035860          230 VI-E-----LSDYKIAVYTLGKDDSWRIISSS-LALRPDVSYEFGVS-AYGDMHWISFDQNN------------------  283 (440)
Q Consensus       230 ~~-~-----~~~~~~~Vyss~~t~~W~~~~~~-p~~~~~~~~~~~v~-~~G~lywl~~~~~~------------------  283 (440)
                      .. .     .....+++|+.. +++|+.+... |... ...  .++. .+|.||-+......                  
T Consensus        94 ~~~~~~~~~~~~~~v~~YD~~-~n~W~~~~~~~p~~~-~~~--~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~  169 (376)
T PRK14131         94 GKTNSEGSPQVFDDVYKYDPK-TNSWQKLDTRSPVGL-AGH--VAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP  169 (376)
T ss_pred             CCCCCCCceeEcccEEEEeCC-CCEEEeCCCCCCCcc-cce--EEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhh
Confidence            11 0     113468999999 9999998753 2221 111  1344 79999999764310                  


Q ss_pred             -----------------CceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEE
Q 035860          284 -----------------IHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIW  345 (440)
Q Consensus       284 -----------------~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW  345 (440)
                                       ....+..||+.+.+|..+ ++|....   ....++..+++|+++.....     ......++|
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~-----~~~~~~~~~  241 (376)
T PRK14131        170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIK-----PGLRTDAVK  241 (376)
T ss_pred             hhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeEC-----CCcCChhhe
Confidence                             013699999999999987 4553111   33457778999999996531     122456677


Q ss_pred             EeeccCCCcccceeEEeec
Q 035860          346 VLKDHYERNEWSKAYKIST  364 (440)
Q Consensus       346 ~l~~~g~~~~W~~~~~i~~  364 (440)
                      ..+-..++..|+++..|+.
T Consensus       242 ~~~~~~~~~~W~~~~~~p~  260 (376)
T PRK14131        242 QGKFTGNNLKWQKLPDLPP  260 (376)
T ss_pred             EEEecCCCcceeecCCCCC
Confidence            6653223568999887764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.41  E-value=1.6e-05  Score=82.06  Aligned_cols=196  Identities=13%  Similarity=0.069  Sum_probs=127.7

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc-ccCCcceEEEEEeCCCCC
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV-IELSDYKIAVYTLGKDDS  248 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~-~~~~~~~~~Vyss~~t~~  248 (440)
                      ...+..+||.+++|..+.+++......              +.+.-..    +|.+++ .. +......++.|+.. ++.
T Consensus       300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~--------------~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~-~~~  360 (571)
T KOG4441|consen  300 LRSVECYDPKTNEWSSLAPMPSPRCRV--------------GVAVLNG----KLYVVGGYDSGSDRLSSVERYDPR-TNQ  360 (571)
T ss_pred             cceeEEecCCcCcEeecCCCCcccccc--------------cEEEECC----EEEEEccccCCCcccceEEEecCC-CCc
Confidence            356778999999999998887653211              3332221    666664 22 33456789999999 999


Q ss_pred             cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEE
Q 035860          249 WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALV  326 (440)
Q Consensus       249 W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv  326 (440)
                      |..++.+.......   ..+.++|.+|-+...+... ...+-.||..+.+|..+ +++...    .....++++|+|+++
T Consensus       361 W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r----~~~gv~~~~g~iYi~  433 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR----SGHGVAVLGGKLYII  433 (571)
T ss_pred             eeccCCccCccccc---eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce----eeeEEEEECCEEEEE
Confidence            99988876633222   2678999999998776332 36799999999999988 455522    556789999999999


Q ss_pred             EcCCCCCCCCCCccEEEEEEeecc-CCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ecC----CCce
Q 035860          327 TFPTDDYDGDTEYIWIEIWVLKDH-YERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TFR----HDNK  400 (440)
Q Consensus       327 ~~~~~~~~~~~~~~~l~IW~l~~~-g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~----~~~~  400 (440)
                      +....      ...  .+=..+-| -....|+.+..|+.....         ..++.  .+| .||.. -+.    ...+
T Consensus       434 GG~~~------~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~---------~g~a~--~~~-~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  434 GGGDG------SSN--CLNSVECYDPETNTWTLIAPMNTRRSG---------FGVAV--LNG-KIYVVGGFDGTSALSSV  493 (571)
T ss_pred             cCcCC------Ccc--ccceEEEEcCCCCceeecCCccccccc---------ceEEE--ECC-EEEEECCccCCCccceE
Confidence            97651      111  11111212 135689998888754321         11222  244 45552 111    1236


Q ss_pred             EEEECCCCcEEE
Q 035860          401 FVLDLENDDCHL  412 (440)
Q Consensus       401 ~~yd~~~~~~~~  412 (440)
                      -.||+++++|..
T Consensus       494 E~ydp~~~~W~~  505 (571)
T KOG4441|consen  494 ERYDPETNQWTM  505 (571)
T ss_pred             EEEcCCCCceeE
Confidence            789999999975

>PHA03098 kelch-like protein; Provisional

Probab=98.33  E-value=3.7e-05  Score=79.51  Aligned_cols=177  Identities=15%  Similarity=0.057  Sum_probs=110.9

Q ss_pred             EEeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec-
Q 035860          153 IYFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP-  229 (440)
Q Consensus       153 i~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~-  229 (440)
                      .+.+.+|-|.+.++..  .....+.++||.|++|..+|+++.....             ..+..++.     +|..++- 
T Consensus       337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-------------~~~~~~~~-----~iYv~GG~  398 (534)
T PHA03098        337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-------------PCVVNVNN-----LIYVIGGI  398 (534)
T ss_pred             eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-------------ceEEEECC-----EEEEECCc
Confidence            3445566665444311  1234688999999999999887654211             11222221     4555541 


Q ss_pred             -cccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC----ceEEEEEEcCCccEEEee-C
Q 035860          230 -VIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI----HTCIFSFDFNKEEFKKID-L  303 (440)
Q Consensus       230 -~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~Il~fD~~~e~~~~i~-l  303 (440)
                       .+......+++|+.. ++.|+.+..+|......   .++..+|.+|-+.......    ...+..||+.+++|..++ +
T Consensus       399 ~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  474 (534)
T PHA03098        399 SKNDELLKTVECFSLN-TNKWSKGSPLPISHYGG---CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL  474 (534)
T ss_pred             CCCCcccceEEEEeCC-CCeeeecCCCCccccCc---eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC
Confidence             112224578999999 99999988776532222   2678899999887543211    135999999999999884 3


Q ss_pred             CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEee
Q 035860          304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS  363 (440)
Q Consensus       304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~  363 (440)
                      |...    ....++..+|+|++++....      ....-.||..+-.  ...|+.....|
T Consensus       475 ~~~r----~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~--~~~W~~~~~~p  522 (534)
T PHA03098        475 NFPR----INASLCIFNNKIYVVGGDKY------EYYINEIEVYDDK--TNTWTLFCKFP  522 (534)
T ss_pred             Cccc----ccceEEEECCEEEEEcCCcC------CcccceeEEEeCC--CCEEEecCCCc
Confidence            3321    34566778999999986541      1113357777653  56898876644

>PHA02790 Kelch-like protein; Provisional

Probab=98.32  E-value=3.7e-05  Score=78.14  Aligned_cols=143  Identities=12%  Similarity=-0.036  Sum_probs=96.2

Q ss_pred             EEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEecccc
Q 035860          153 IYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIE  232 (440)
Q Consensus       153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~  232 (440)
                      ..++.+|-|.+.++. .....+-.++|.+++|..+|+++.....             ..+..++.     +|.+++... 
T Consensus       313 ~~v~~~~~iYviGG~-~~~~sve~ydp~~n~W~~~~~l~~~r~~-------------~~~~~~~g-----~IYviGG~~-  372 (480)
T PHA02790        313 SGVPANNKLYVVGGL-PNPTSVERWFHGDAAWVNMPSLLKPRCN-------------PAVASINN-----VIYVIGGHS-  372 (480)
T ss_pred             eEEEECCEEEEECCc-CCCCceEEEECCCCeEEECCCCCCCCcc-------------cEEEEECC-----EEEEecCcC-
Confidence            345677877655442 1124567899999999999988754211             11223332     566664111 


Q ss_pred             CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCC
Q 035860          233 LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEP  311 (440)
Q Consensus       233 ~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~  311 (440)
                      .....+++|+.. ++.|..++.++......   ..+.++|.+|-+..       ..-.||+++++|+.+ ++|...    
T Consensus       373 ~~~~~ve~ydp~-~~~W~~~~~m~~~r~~~---~~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~~m~~~r----  437 (480)
T PHA02790        373 ETDTTTEYLLPN-HDQWQFGPSTYYPHYKS---CALVFGRRLFLVGR-------NAEFYCESSNTWTLIDDPIYPR----  437 (480)
T ss_pred             CCCccEEEEeCC-CCEEEeCCCCCCccccc---eEEEECCEEEEECC-------ceEEecCCCCcEeEcCCCCCCc----
Confidence            123568999999 99999988776533322   26789999998763       356799999999988 344322    


Q ss_pred             CCCEEEEeCCeEEEEEcCC
Q 035860          312 RSPSLINLRGNLALVTFPT  330 (440)
Q Consensus       312 ~~~~L~~~~G~L~lv~~~~  330 (440)
                      ....+++.+|+|++++...
T Consensus       438 ~~~~~~v~~~~IYviGG~~  456 (480)
T PHA02790        438 DNPELIIVDNKLLLIGGFY  456 (480)
T ss_pred             cccEEEEECCEEEEECCcC
Confidence            5567899999999999754

>PLN02193 nitrile-specifier protein

Probab=98.25  E-value=0.00037  Score=70.68  Aligned_cols=188  Identities=8%  Similarity=-0.057  Sum_probs=108.6

Q ss_pred             EeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860          154 YFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV  230 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~  230 (440)
                      ....++.|.+.....  .....++++||.|.+|..++++.......   +       .+ ++...    .=||+.+. ..
T Consensus       224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R---~-------~h-~~~~~----~~~iYv~GG~~  288 (470)
T PLN02193        224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR---S-------FH-SMAAD----EENVYVFGGVS  288 (470)
T ss_pred             EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc---c-------ce-EEEEE----CCEEEEECCCC
Confidence            445566665543311  12357899999999999998763211111   1       11 22211    12566664 22


Q ss_pred             ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeC----CCC
Q 035860          231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDL----PID  306 (440)
Q Consensus       231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~l----P~~  306 (440)
                      .......+++|+.. ++.|..+...............+.++|.+|.+..........+..||+.+.+|..++.    |..
T Consensus       289 ~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~  367 (470)
T PLN02193        289 ATARLKTLDSYNIV-DKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE  367 (470)
T ss_pred             CCCCcceEEEEECC-CCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC
Confidence            22234568999999 9999987642111011111125678999998865332112479999999999998842    322


Q ss_pred             CCCCCCCCEEEEeCCeEEEEEcCCCC-CCCCCCc--cEEEEEEeeccCCCcccceeEEee
Q 035860          307 CNMEPRSPSLINLRGNLALVTFPTDD-YDGDTEY--IWIEIWVLKDHYERNEWSKAYKIS  363 (440)
Q Consensus       307 ~~~~~~~~~L~~~~G~L~lv~~~~~~-~~~~~~~--~~l~IW~l~~~g~~~~W~~~~~i~  363 (440)
                      .    .....+..+++|+++...... ...+...  ..-++|.++-.  +..|+++..++
T Consensus       368 R----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~  421 (470)
T PLN02193        368 R----SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG  421 (470)
T ss_pred             c----ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence            1    344567888999999875310 0000001  12268999864  56899876654

>PLN02153 epithiospecifier protein

Probab=98.21  E-value=0.00028  Score=68.54  Aligned_cols=188  Identities=11%  Similarity=-0.004  Sum_probs=105.3

Q ss_pred             EeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCC-CCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c
Q 035860          154 YFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYC-DYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P  229 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~  229 (440)
                      +.+.+|.|.+.....  .....+.++||.|.+|..++++.... +..       +  ..+ ++....  +  |+++++ .
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-------R--~~~-~~~~~~--~--~iyv~GG~  146 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-------R--TFH-SMASDE--N--HVYVFGGV  146 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC-------c--eee-EEEEEC--C--EEEEECCc
Confidence            445566665443311  11347899999999999998652210 110       0  011 222111  1  466664 1


Q ss_pred             ccc------CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC-------C--CceEEEEEEcC
Q 035860          230 VIE------LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN-------N--IHTCIFSFDFN  294 (440)
Q Consensus       230 ~~~------~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~-------~--~~~~Il~fD~~  294 (440)
                      ...      .....+++|+.. ++.|..++.+............+.++|.+|-+.....       .  ....+.+||+.
T Consensus       147 ~~~~~~~~~~~~~~v~~yd~~-~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~  225 (341)
T PLN02153        147 SKGGLMKTPERFRTIEAYNIA-DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA  225 (341)
T ss_pred             cCCCccCCCcccceEEEEECC-CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC
Confidence            110      112468999999 9999988754321011111125678999998754221       0  01468999999


Q ss_pred             CccEEEee----CCCCCCCCCCCCEEEEeCCeEEEEEcCCCCC-CCC--CCccEEEEEEeeccCCCcccceeEEe
Q 035860          295 KEEFKKID----LPIDCNMEPRSPSLINLRGNLALVTFPTDDY-DGD--TEYIWIEIWVLKDHYERNEWSKAYKI  362 (440)
Q Consensus       295 ~e~~~~i~----lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~-~~~--~~~~~l~IW~l~~~g~~~~W~~~~~i  362 (440)
                      +.+|..++    +|...    .....+..+++|+++......- ..+  .....-+||.++-.  +..|+++...
T Consensus       226 ~~~W~~~~~~g~~P~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~  294 (341)
T PLN02153        226 SGKWTEVETTGAKPSAR----SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGEC  294 (341)
T ss_pred             CCcEEeccccCCCCCCc----ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCC
Confidence            99999884    34322    3345677889999998742000 000  01112379999863  5689987654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.05  E-value=0.00053  Score=66.08  Aligned_cols=138  Identities=10%  Similarity=-0.027  Sum_probs=84.0

Q ss_pred             eeEEEEccccccc----ccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCC
Q 035860          172 DHVHLWNPLRREV----LRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKD  246 (440)
Q Consensus       172 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t  246 (440)
                      ..+..+|+.+++|    ..+|+++.....             ..+..++.     +|..++ ..+......+++|+.. +
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-------------~~~~~~~~-----~iYv~GG~~~~~~~~~v~~yd~~-~  148 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFEN-------------GSACYKDG-----TLYVGGGNRNGKPSNKSYLFNLE-T  148 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccC-------------ceEEEECC-----EEEEEeCcCCCccCceEEEEcCC-C
Confidence            5788899999987    667776544211             11222322     566654 1122234578999999 9


Q ss_pred             CCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeC-CCC-CCCCC-CCCEEEEeCCeE
Q 035860          247 DSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDL-PID-CNMEP-RSPSLINLRGNL  323 (440)
Q Consensus       247 ~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~l-P~~-~~~~~-~~~~L~~~~G~L  323 (440)
                      +.|..++.+|......  ...+.++|.+|-+..........+.+||+.+++|..++. +.. ..... ....++..+|+|
T Consensus       149 ~~W~~~~~~p~~~r~~--~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~i  226 (323)
T TIGR03548       149 QEWFELPDFPGEPRVQ--PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLL  226 (323)
T ss_pred             CCeeECCCCCCCCCCc--ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEE
Confidence            9999988766421111  125678999999876542222346899999999998742 210 11000 223345557899


Q ss_pred             EEEEcCC
Q 035860          324 ALVTFPT  330 (440)
Q Consensus       324 ~lv~~~~  330 (440)
                      +++....
T Consensus       227 yv~GG~~  233 (323)
T TIGR03548       227 LCIGGFN  233 (323)
T ss_pred             EEECCcC
Confidence            9888654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.99  E-value=0.002  Score=63.55  Aligned_cols=92  Identities=15%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC----ceEEEEEEcCCccEEEe-eCCCCCCCC
Q 035860          236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI----HTCIFSFDFNKEEFKKI-DLPIDCNME  310 (440)
Q Consensus       236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~Il~fD~~~e~~~~i-~lP~~~~~~  310 (440)
                      ..+++|+.. ++.|..++.+|......  ...+.++|.||.+.......    ......||.++.+|..+ ++|......
T Consensus       189 ~~v~~YD~~-t~~W~~~~~~p~~~~~~--~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~  265 (376)
T PRK14131        189 KEVLSYDPS-TNQWKNAGESPFLGTAG--SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS  265 (376)
T ss_pred             ceEEEEECC-CCeeeECCcCCCCCCCc--ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence            468999999 99999988776522222  12577899999998643211    13455678899999887 555432111


Q ss_pred             -C---CCCEEEEeCCeEEEEEcCC
Q 035860          311 -P---RSPSLINLRGNLALVTFPT  330 (440)
Q Consensus       311 -~---~~~~L~~~~G~L~lv~~~~  330 (440)
                       .   .....+.++|+|+++....
T Consensus       266 ~~~~~~~~~a~~~~~~iyv~GG~~  289 (376)
T PRK14131        266 SQEGVAGAFAGYSNGVLLVAGGAN  289 (376)
T ss_pred             cCCccceEeceeECCEEEEeeccC
Confidence             0   1112466899999998653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.88  E-value=0.0033  Score=61.17  Aligned_cols=91  Identities=15%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEE--cCCccEEEe-eCCCCCCCC
Q 035860          236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFD--FNKEEFKKI-DLPIDCNME  310 (440)
Q Consensus       236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD--~~~e~~~~i-~lP~~~~~~  310 (440)
                      ..+++|+.. ++.|+.++.+|.......  ..+.++|.||-+.......  ...+..||  .++.+|..+ ++|......
T Consensus       168 ~~v~~YDp~-t~~W~~~~~~p~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~  244 (346)
T TIGR03547       168 KNVLSYDPS-TNQWRNLGENPFLGTAGS--AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS  244 (346)
T ss_pred             ceEEEEECC-CCceeECccCCCCcCCCc--eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence            469999999 999999987764212221  2567899999987653211  12344454  566799877 555422110


Q ss_pred             C---CCCEEEEeCCeEEEEEcC
Q 035860          311 P---RSPSLINLRGNLALVTFP  329 (440)
Q Consensus       311 ~---~~~~L~~~~G~L~lv~~~  329 (440)
                      .   .....++++|+|+++...
T Consensus       245 ~~~~~~~~a~~~~~~Iyv~GG~  266 (346)
T TIGR03547       245 QEGLAGAFAGISNGVLLVAGGA  266 (346)
T ss_pred             cccccEEeeeEECCEEEEeecC
Confidence            0   122367789999999864

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2e-05  Score=71.85  Aligned_cols=46  Identities=20%  Similarity=0.238  Sum_probs=39.5

Q ss_pred             hhccccCCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhH
Q 035860           35 TTIKLCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF   80 (440)
Q Consensus        35 ~~~~~~~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F   80 (440)
                      ..+-+.+..|||||++.||+.||.|+|+++..|||+|+++-++..-
T Consensus        92 ~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   92 NNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             cCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            3334446899999999999999999999999999999999887543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.59  E-value=0.0021  Score=59.70  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=40.1

Q ss_pred             CCCc----HHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHh
Q 035860           42 MEFP----SNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVM   86 (440)
Q Consensus        42 ~~LP----~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~   86 (440)
                      ..||    +++.+.||+.|...+|+.|..|||+|+++++++...+....
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie  124 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE  124 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence            4689    99999999999999999999999999999999877665543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.35  E-value=0.014  Score=55.89  Aligned_cols=221  Identities=10%  Similarity=0.117  Sum_probs=114.8

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe------cc--ccCCcceEEEEE
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY------PV--IELSDYKIAVYT  242 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~------~~--~~~~~~~~~Vys  242 (440)
                      .+.+|++|--+.+|+.+-.+..+.+..           ++ .+...++.    ++.++      +.  .-...--..+|+
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRs-----------sh-q~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd  160 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRS-----------SH-QAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFD  160 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCc-----------cc-eeEEeccC----eEEEeccccCCcchhhhhhhhheeeee
Confidence            367899999999999873222221111           11 22233322    22221      10  112233467899


Q ss_pred             eCCCCCcceec--cCCcccCCCCCcccEEEcCeEEEEEecCCCC----ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEE
Q 035860          243 LGKDDSWRIIS--SSLALRPDVSYEFGVSAYGDMHWISFDQNNI----HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSL  316 (440)
Q Consensus       243 s~~t~~W~~~~--~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L  316 (440)
                      +. ++.|..+.  +-|....-..  ..++-+-.+-+-...+...    -.-|.+||+++=+|+.+..+-........+++
T Consensus       161 ~~-trkweql~~~g~PS~RSGHR--MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~  237 (521)
T KOG1230|consen  161 LK-TRKWEQLEFGGGPSPRSGHR--MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF  237 (521)
T ss_pred             ec-cchheeeccCCCCCCCccce--eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE
Confidence            99 99999986  3333111110  0122222222222222111    14689999999999999765432222245566


Q ss_pred             EEe-CCeEEEEEcCCCCC---CCCCCccEEEEEEeecc---CCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860          317 INL-RGNLALVTFPTDDY---DGDTEYIWIEIWVLKDH---YERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW  389 (440)
Q Consensus       317 ~~~-~G~L~lv~~~~~~~---~~~~~~~~l~IW~l~~~---g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  389 (440)
                      .+. .|.+++........   ..+.+..+-++|.|+..   .++-.|+++..+...+-...       .+.|.+..++..
T Consensus       238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs-------gfsv~va~n~ka  310 (521)
T KOG1230|consen  238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS-------GFSVAVAKNHKA  310 (521)
T ss_pred             EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC-------ceeEEEecCCce
Confidence            666 78887776432111   01344567899999754   12457888876665443211       022222233333


Q ss_pred             EEEe-------------ecCCCceEEEECCCCcEEE-EEecc
Q 035860          390 MVLD-------------TFRHDNKFVLDLENDDCHL-RICPV  417 (440)
Q Consensus       390 i~l~-------------~~~~~~~~~yd~~~~~~~~-~~~~~  417 (440)
                      ++|.             .---+.++.||+..++|.. .+.+.
T Consensus       311 l~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~  352 (521)
T KOG1230|consen  311 LFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGK  352 (521)
T ss_pred             EEecceecccccchhhhhhhhhhhhheecccchhhHhhhccC
Confidence            3331             0012567899999999865 44433

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=96.63  E-value=0.073  Score=48.13  Aligned_cols=119  Identities=13%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             cceEEEEEeCCCCCcceec---cCCcccCCCCCcccEEEcCeEEEEEecCCCC----------ceEEEEEEcCCccEEEe
Q 035860          235 DYKIAVYTLGKDDSWRIIS---SSLALRPDVSYEFGVSAYGDMHWISFDQNNI----------HTCIFSFDFNKEEFKKI  301 (440)
Q Consensus       235 ~~~~~Vyss~~t~~W~~~~---~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~----------~~~Il~fD~~~e~~~~i  301 (440)
                      ...+++++.. |-.|+.+.   .+|....+. .  ++.++|.+|-...+....          -..|++||+.++.|..-
T Consensus       156 S~d~h~ld~~-TmtWr~~~Tkg~PprwRDFH-~--a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~  231 (392)
T KOG4693|consen  156 SQDTHVLDFA-TMTWREMHTKGDPPRWRDFH-T--ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT  231 (392)
T ss_pred             hccceeEecc-ceeeeehhccCCCchhhhhh-h--hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence            4557888888 99999886   344333332 2  677889999887655431          16899999999999765


Q ss_pred             eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEee
Q 035860          302 DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKIS  363 (440)
Q Consensus       302 ~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~  363 (440)
                      +--.-.......-...+++|+++++....    ......--++|..+.  ...-|+++..=.
T Consensus       232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYn----g~ln~HfndLy~FdP--~t~~W~~I~~~G  287 (392)
T KOG4693|consen  232 PENTMKPGGRRSHSTFVYNGKMYMFGGYN----GTLNVHFNDLYCFDP--KTSMWSVISVRG  287 (392)
T ss_pred             CCCCcCCCcccccceEEEcceEEEecccc----hhhhhhhcceeeccc--ccchheeeeccC
Confidence            21111111124556788999999999765    111223347788876  356798864433

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=96.42  E-value=0.21  Score=45.30  Aligned_cols=217  Identities=12%  Similarity=0.095  Sum_probs=117.1

Q ss_pred             cceeEEEEcccccccccCCCCCCC--CCCCCCccccccc--ccceEEEeeeCCCCCEEEEEEe-c-cccCCcceEEEEEe
Q 035860          170 VKDHVHLWNPLRREVLRLPKLGYY--CDYQHDYYDAYRG--LRGHFGMGYDSATGTYKIVQSY-P-VIELSDYKIAVYTL  243 (440)
Q Consensus       170 ~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~--~~~~~~~g~d~~~~~ykVv~~~-~-~~~~~~~~~~Vyss  243 (440)
                      ..-.+.|.|-.+-+|..+||--..  .+..   |. ..+  ..++....|+.     |+...+ . +++.......-|+.
T Consensus        42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~---yp-~VPyqRYGHtvV~y~d-----~~yvWGGRND~egaCN~Ly~fDp  112 (392)
T KOG4693|consen   42 DPIDVHVLNAENYRWTKMPPGITKATIESP---YP-AVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGACNLLYEFDP  112 (392)
T ss_pred             CcceeEEeeccceeEEecCcccccccccCC---CC-ccchhhcCceEEEEcc-----eEEEEcCccCcccccceeeeecc
Confidence            357899999999999999983211  1111   10 000  00122233332     333332 2 22445556788999


Q ss_pred             CCCCCcceec---cCCcccCCCCCcccEEEcCeEEEEEecCCCC---ceEEEEEEcCCccEEEe---eCCCCCCCCCCCC
Q 035860          244 GKDDSWRIIS---SSLALRPDVSYEFGVSAYGDMHWISFDQNNI---HTCIFSFDFNKEEFKKI---DLPIDCNMEPRSP  314 (440)
Q Consensus       244 ~~t~~W~~~~---~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~Il~fD~~~e~~~~i---~lP~~~~~~~~~~  314 (440)
                      + ++.|++.+   .+|... ...+  +++++..+|-......+.   ...+.++|+++.+|+.+   --|+.-.+   .-
T Consensus       113 ~-t~~W~~p~v~G~vPgaR-DGHs--AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD---FH  185 (392)
T KOG4693|consen  113 E-TNVWKKPEVEGFVPGAR-DGHS--ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD---FH  185 (392)
T ss_pred             c-cccccccceeeecCCcc-CCce--eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh---hh
Confidence            9 99998765   334322 2222  677788888776433221   25789999999999988   34554332   22


Q ss_pred             EEEEeCCeEEEEEcCCCCCC---CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEE
Q 035860          315 SLINLRGNLALVTFPTDDYD---GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMV  391 (440)
Q Consensus       315 ~L~~~~G~L~lv~~~~~~~~---~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  391 (440)
                      .-.+++|..+++.....+..   ...+...-.|-.|+-.  ++.|..-..-+..+. ++ ....      ....+|.+-+
T Consensus       186 ~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~-GR-RSHS------~fvYng~~Y~  255 (392)
T KOG4693|consen  186 TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPG-GR-RSHS------TFVYNGKMYM  255 (392)
T ss_pred             hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCC-cc-cccc------eEEEcceEEE
Confidence            34556788888876542211   1122233455566542  467987622222111 00 1111      1113555333


Q ss_pred             Eeec------CCCceEEEECCCCcEEE
Q 035860          392 LDTF------RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       392 l~~~------~~~~~~~yd~~~~~~~~  412 (440)
                      |.-+      .-+.+..||+++..|.+
T Consensus       256 FGGYng~ln~HfndLy~FdP~t~~W~~  282 (392)
T KOG4693|consen  256 FGGYNGTLNVHFNDLYCFDPKTSMWSV  282 (392)
T ss_pred             ecccchhhhhhhcceeecccccchhee
Confidence            3211      11467899999999986

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.36  E-value=0.25  Score=50.26  Aligned_cols=153  Identities=11%  Similarity=0.090  Sum_probs=94.7

Q ss_pred             eEEEEEeCCCCCcceecc---CCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEeeC----CCCC
Q 035860          237 KIAVYTLGKDDSWRIISS---SLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKIDL----PIDC  307 (440)
Q Consensus       237 ~~~Vyss~~t~~W~~~~~---~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i~l----P~~~  307 (440)
                      .+.+++.. +..|.....   .|.. ...  ...+.++..||.+.......  ...|.+||+.+.+|..+..    |+..
T Consensus        89 dl~~~d~~-~~~w~~~~~~g~~p~~-r~g--~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r  164 (482)
T KOG0379|consen   89 DLYVLDLE-SQLWTKPAATGDEPSP-RYG--HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR  164 (482)
T ss_pred             eeEEeecC-CcccccccccCCCCCc-ccc--eeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence            58888888 888876552   2321 111  22677888888887766321  2589999999999987732    3322


Q ss_pred             CCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcC
Q 035860          308 NMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAG  387 (440)
Q Consensus       308 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  387 (440)
                          ....++..+.+|.+......     .....-++|+++-.  ...|.++.+....+....       .+.+.+. ++
T Consensus       165 ----~~Hs~~~~g~~l~vfGG~~~-----~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~-------gH~~~~~-~~  225 (482)
T KOG0379|consen  165 ----AGHSATVVGTKLVVFGGIGG-----TGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRY-------GHAMVVV-GN  225 (482)
T ss_pred             ----ccceEEEECCEEEEECCccC-----cccceeeeeeeccc--cccceecccCCCCCCCCC-------CceEEEE-CC
Confidence                44566777789999887651     12257899999863  456999988876554211       1222321 22


Q ss_pred             cEEEEe-e----cCCCceEEEECCCCcEEE
Q 035860          388 RWMVLD-T----FRHDNKFVLDLENDDCHL  412 (440)
Q Consensus       388 ~~i~l~-~----~~~~~~~~yd~~~~~~~~  412 (440)
                      .++++. -    ...+.+..+|+.+.+|..
T Consensus       226 ~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~  255 (482)
T KOG0379|consen  226 KLLVFGGGDDGDVYLNDVHILDLSTWEWKL  255 (482)
T ss_pred             eEEEEeccccCCceecceEeeecccceeee
Confidence            222221 1    112456899999977653

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.34  E-value=0.34  Score=49.36  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=106.7

Q ss_pred             cEEeeeccEEEeeecC--CCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec
Q 035860          152 PIYFVAYGFICFGESS--CHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP  229 (440)
Q Consensus       152 ~i~~s~~GLlcl~~~~--~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~  229 (440)
                      .+++..+.|+++....  ......+...|+.|++|..+.+.....+..          .++....++.     ||+.++.
T Consensus       117 ~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r----------~~Hs~~~~g~-----~l~vfGG  181 (482)
T KOG0379|consen  117 SLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR----------AGHSATVVGT-----KLVVFGG  181 (482)
T ss_pred             eEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc----------ccceEEEECC-----EEEEECC
Confidence            3444445666665542  112348999999999999987655421111          1132333332     5666642


Q ss_pred             cc--cCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC-CC--ceEEEEEEcCCccEEEe---
Q 035860          230 VI--ELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN-NI--HTCIFSFDFNKEEFKKI---  301 (440)
Q Consensus       230 ~~--~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~-~~--~~~Il~fD~~~e~~~~i---  301 (440)
                      .+  ......++||+.. +..|..+....... .+....++.+-|.-+|+..... +.  -.-+..||+.+.+|..+   
T Consensus       182 ~~~~~~~~ndl~i~d~~-~~~W~~~~~~g~~P-~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~  259 (482)
T KOG0379|consen  182 IGGTGDSLNDLHIYDLE-TSTWSELDTQGEAP-SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTG  259 (482)
T ss_pred             ccCcccceeeeeeeccc-cccceecccCCCCC-CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecccc
Confidence            11  1246679999999 99999887322100 0112224444455555544433 22  26799999999888733   


Q ss_pred             -eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCc-cEEEEEEeeccCCCcccceeEEee
Q 035860          302 -DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEY-IWIEIWVLKDHYERNEWSKAYKIS  363 (440)
Q Consensus       302 -~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~-~~l~IW~l~~~g~~~~W~~~~~i~  363 (440)
                       ..|...    ....++..+..+.++.....     ... ..-++|.|+..  +..|.++..+.
T Consensus       260 g~~p~~R----~~h~~~~~~~~~~l~gG~~~-----~~~~~l~~~~~l~~~--~~~w~~~~~~~  312 (482)
T KOG0379|consen  260 GDLPSPR----SGHSLTVSGDHLLLFGGGTD-----PKQEPLGDLYGLDLE--TLVWSKVESVG  312 (482)
T ss_pred             CCCCCCc----ceeeeEEECCEEEEEcCCcc-----ccccccccccccccc--ccceeeeeccc
Confidence             122221    44556655668888886541     111 45678888764  57899987777

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.67  E-value=0.0036  Score=57.70  Aligned_cols=45  Identities=9%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             CCCcHHHHHHHHhcCC-----cccceeeeccccchhhhhCChhHHHHHHh
Q 035860           42 MEFPSNIIYNILLRQP-----VKVLLRFRCVSKTWSNIIDSHSFAHAHVM   86 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP-----~~sL~R~r~VCK~W~~li~s~~F~~~~~~   86 (440)
                      ..||||+|.+||.++=     ..+|-++.+|||.|+-...+|.|.+....
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            5799999999998864     58999999999999999999999876543

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=95.59  E-value=1.1  Score=41.17  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             cEEEcCeEEEEEecCCCCceEEEEEEcCCccEE-EeeCCCCCCCCC--------CCCEEEEeCCeEEEEEcCCCCCCCCC
Q 035860          267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFK-KIDLPIDCNMEP--------RSPSLINLRGNLALVTFPTDDYDGDT  337 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~-~i~lP~~~~~~~--------~~~~L~~~~G~L~lv~~~~~~~~~~~  337 (440)
                      .|..||.+|+-....    ..|+.||+.++.-. ...||.......        ....+++-+..|-++....      .
T Consensus        74 ~vVYngslYY~~~~s----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~------~  143 (250)
T PF02191_consen   74 HVVYNGSLYYNKYNS----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE------D  143 (250)
T ss_pred             eEEECCcEEEEecCC----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC------C
Confidence            678899999998866    68999999999998 889998654311        4566777777888887765      2


Q ss_pred             CccEEEEEEeec
Q 035860          338 EYIWIEIWVLKD  349 (440)
Q Consensus       338 ~~~~l~IW~l~~  349 (440)
                      ....|.|=.|+.
T Consensus       144 ~~g~ivvskld~  155 (250)
T PF02191_consen  144 NNGNIVVSKLDP  155 (250)
T ss_pred             CCCcEEEEeeCc
Confidence            234577777765

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>smart00284 OLF Olfactomedin-like domains

Probab=95.35  E-value=0.69  Score=42.42  Aligned_cols=74  Identities=19%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             cEEEcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCC--------CCCCEEEEeCCeEEEEEcCCCCCCCCC
Q 035860          267 GVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNME--------PRSPSLINLRGNLALVTFPTDDYDGDT  337 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~--------~~~~~L~~~~G~L~lv~~~~~~~~~~~  337 (440)
                      .|+.||.||+-....    ..|+.||+.++.... -.||......        ...+.|++-+..|-++....      .
T Consensus        79 ~VVYngslYY~~~~s----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~------~  148 (255)
T smart00284       79 VVVYNGSLYFNKFNS----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE------Q  148 (255)
T ss_pred             EEEECceEEEEecCC----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc------C
Confidence            789999999977665    589999999999964 4678532111        15578888888998888765      2


Q ss_pred             CccEEEEEEeecc
Q 035860          338 EYIWIEIWVLKDH  350 (440)
Q Consensus       338 ~~~~l~IW~l~~~  350 (440)
                      ....|.|=.|+..
T Consensus       149 ~~g~ivvSkLnp~  161 (255)
T smart00284      149 NAGKIVISKLNPA  161 (255)
T ss_pred             CCCCEEEEeeCcc
Confidence            3477888888764

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=94.23  E-value=0.42  Score=39.20  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             EEEEEEcCCc--cEEEeeCCCCCCCCC----------CCCEEEEeCCeEEEEEcCCCCCCC-CCCccEEEEEEeecc-CC
Q 035860          287 CIFSFDFNKE--EFKKIDLPIDCNMEP----------RSPSLINLRGNLALVTFPTDDYDG-DTEYIWIEIWVLKDH-YE  352 (440)
Q Consensus       287 ~Il~fD~~~e--~~~~i~lP~~~~~~~----------~~~~L~~~~G~L~lv~~~~~~~~~-~~~~~~l~IW~l~~~-g~  352 (440)
                      +|+.+|+-.+  .++.|+||.......          ....++..+|+|-+|......... ......+.+|.|... ++
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~   86 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS   86 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence            6888998765  677889997653221          344677889999999876521110 024678999999884 23


Q ss_pred             CcccceeEEeecCCCC
Q 035860          353 RNEWSKAYKISTDQDG  368 (440)
Q Consensus       353 ~~~W~~~~~i~~~~~~  368 (440)
                      ...|.+-+++....+.
T Consensus        87 ~~~W~~d~~v~~~diw  102 (131)
T PF07762_consen   87 SWEWKKDCEVDLSDIW  102 (131)
T ss_pred             CCCEEEeEEEEhhhcc
Confidence            5789999999987654

>PF13964 Kelch_6: Kelch motif

Probab=93.03  E-value=0.22  Score=33.06  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             cEEEcCeEEEEEecCCC-C-ceEEEEEEcCCccEEEe-eCC
Q 035860          267 GVSAYGDMHWISFDQNN-I-HTCIFSFDFNKEEFKKI-DLP  304 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~-~-~~~Il~fD~~~e~~~~i-~lP  304 (440)
                      .|.++|.||.+...... . ...+..||+++.+|..+ ++|
T Consensus         7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            78899999999876652 1 36899999999999998 444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=92.77  E-value=4.9  Score=41.47  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHH
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHA   83 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~   83 (440)
                      ..||.++...||..|+.++|++++.||+.|+.++.+......
T Consensus       109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~  150 (537)
T KOG0274|consen  109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR  150 (537)
T ss_pred             hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence            579999999999999999999999999999999998776654

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=92.05  E-value=4.9  Score=38.98  Aligned_cols=138  Identities=17%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe--ccc-cCC---cceEEEE--Ee
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY--PVI-ELS---DYKIAVY--TL  243 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~--~~~-~~~---~~~~~Vy--ss  243 (440)
                      ...+|+++.|+....+|.+.......            + .+..   .+  +|.++.  ... ...   ...+|++  +.
T Consensus        86 ~~t~vyDt~t~av~~~P~l~~pk~~p------------i-sv~V---G~--~LY~m~~~~~~~~~~~~~~~~FE~l~~~~  147 (342)
T PF07893_consen   86 GRTLVYDTDTRAVATGPRLHSPKRCP------------I-SVSV---GD--KLYAMDRSPFPEPAGRPDFPCFEALVYRP  147 (342)
T ss_pred             CCeEEEECCCCeEeccCCCCCCCcce------------E-EEEe---CC--eEEEeeccCccccccCccceeEEEecccc
Confidence            66899999999999999865432111            1 1111   12  244443  110 000   0144444  31


Q ss_pred             ------C-CCCCcceeccCCcccCCC-----CCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe---eCCCCCC
Q 035860          244 ------G-KDDSWRIISSSLALRPDV-----SYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI---DLPIDCN  308 (440)
Q Consensus       244 ------~-~t~~W~~~~~~p~~~~~~-----~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i---~lP~~~~  308 (440)
                            . .+-+|+.++.+|......     -...+|+ +|.--|+...+..  ..-.+||+++.+|+..   .||-.-.
T Consensus       148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~--~GTysfDt~~~~W~~~GdW~LPF~G~  224 (342)
T PF07893_consen  148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR--WGTYSFDTESHEWRKHGDWMLPFHGQ  224 (342)
T ss_pred             ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc--eEEEEEEcCCcceeeccceecCcCCc
Confidence                  1 134688877766522111     1223666 8998999777611  2699999999999987   7785321


Q ss_pred             CCC---CCCEEE--EeC--CeEEEEEcCC
Q 035860          309 MEP---RSPSLI--NLR--GNLALVTFPT  330 (440)
Q Consensus       309 ~~~---~~~~L~--~~~--G~L~lv~~~~  330 (440)
                      ...   ....++  ..+  |.||.+....
T Consensus       225 a~y~~el~~W~Gls~~~~~~~lca~dv~~  253 (342)
T PF07893_consen  225 AEYVPELDLWFGLSSDGGGGHLCACDVSS  253 (342)
T ss_pred             cEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence            111   222233  333  3777776654

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=91.58  E-value=0.73  Score=29.87  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             cEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCC
Q 035860          267 GVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLP  304 (440)
Q Consensus       267 ~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP  304 (440)
                      .+.++|.+|-+.......  ...+..||+.+.+|..+ ++|
T Consensus         7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            788999999998766522  48999999999999988 444

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.62  E-value=9.8  Score=35.16  Aligned_cols=226  Identities=13%  Similarity=0.065  Sum_probs=114.0

Q ss_pred             cEEeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCC------CcccccccccceEEEeeeCCCCCEEEE
Q 035860          152 PIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQH------DYYDAYRGLRGHFGMGYDSATGTYKIV  225 (440)
Q Consensus       152 ~i~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~------~~~~~~~~~~~~~~~g~d~~~~~ykVv  225 (440)
                      .+.-+-+|-|-+....   ...+-=.||.|++....|...-..+...      ..+   ..-.+....-+|+.+..++=+
T Consensus        66 dvapapdG~VWft~qg---~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~W---itd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          66 DVAPAPDGAVWFTAQG---TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAW---ITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             ccccCCCCceEEecCc---cccceecCCCCCceEEEecCCCCCCceEEECCCCCee---EecCcceeEEecCcccceEEe
Confidence            4455667777665441   3456668999999999887655433320      000   000000011123333333322


Q ss_pred             EEeccccCCcceEEEEEeCCCCCcceec-----cC-Cc-----cc--CCCCCcccEE--EcCeEEEEEecCCCCceEEEE
Q 035860          226 QSYPVIELSDYKIAVYTLGKDDSWRIIS-----SS-LA-----LR--PDVSYEFGVS--AYGDMHWISFDQNNIHTCIFS  290 (440)
Q Consensus       226 ~~~~~~~~~~~~~~Vyss~~t~~W~~~~-----~~-p~-----~~--~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~  290 (440)
                      -+-.+-....+..-||+-. .+-|=+-.     .+ |.     .+  .......+++  -||.+|+....+    ..|..
T Consensus       140 ~lp~~~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiar  214 (353)
T COG4257         140 PLPLEHADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIAR  214 (353)
T ss_pred             ecccccCCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEE
Confidence            2211223456777888888 77784322     11 11     01  1111112444  469999987776    68999


Q ss_pred             EEcCCccEEEeeCCCCCCCCCCCCEEE-EeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCC
Q 035860          291 FDFNKEEFKKIDLPIDCNMEPRSPSLI-NLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGD  369 (440)
Q Consensus       291 fD~~~e~~~~i~lP~~~~~~~~~~~L~-~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~  369 (440)
                      .|..+..-.+++.|.......  ..+. ..-|++-.-..-.         ..+  -..+-  ...+|.. +.+|-..-. 
T Consensus       215 idp~~~~aev~p~P~~~~~gs--Rriwsdpig~~wittwg~---------g~l--~rfdP--s~~sW~e-ypLPgs~ar-  277 (353)
T COG4257         215 IDPFAGHAEVVPQPNALKAGS--RRIWSDPIGRAWITTWGT---------GSL--HRFDP--SVTSWIE-YPLPGSKAR-  277 (353)
T ss_pred             cccccCCcceecCCCcccccc--cccccCccCcEEEeccCC---------cee--eEeCc--cccccee-eeCCCCCCC-
Confidence            999999888889998743211  1111 1112332221110         111  11111  1235655 344422211 


Q ss_pred             ccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcEEE-EE
Q 035860          370 RIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDCHL-RI  414 (440)
Q Consensus       370 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~~~-~~  414 (440)
                            .+ .+ .+. +-+.|.+.....+.+.-||+++.+..+ ++
T Consensus       278 ------py-s~-rVD-~~grVW~sea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         278 ------PY-SM-RVD-RHGRVWLSEADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             ------cc-ee-eec-cCCcEEeeccccCceeecCcccceEEEecC
Confidence                  00 11 222 334588877777788999999999876 54

>PF13964 Kelch_6: Kelch motif

Probab=89.98  E-value=0.97  Score=29.85  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=26.1

Q ss_pred             eeeccEEEeeecCC---CcceeEEEEcccccccccCCCCCC
Q 035860          155 FVAYGFICFGESSC---HVKDHVHLWNPLRREVLRLPKLGY  192 (440)
Q Consensus       155 ~s~~GLlcl~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~  192 (440)
                      .+.+|-|.+.....   .....+.++||.|++|..+|+++.
T Consensus         8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            44555554443321   235789999999999999998764

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=89.48  E-value=4.2  Score=39.55  Aligned_cols=118  Identities=13%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             eEEEEEeCCCCCcceeccCCcccCCCCCcccEEEc-CeEEEEEecCCCC------c-eEEEEEEcCCccEEEeeCCCCCC
Q 035860          237 KIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAY-GDMHWISFDQNNI------H-TCIFSFDFNKEEFKKIDLPIDCN  308 (440)
Q Consensus       237 ~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~-G~lywl~~~~~~~------~-~~Il~fD~~~e~~~~i~lP~~~~  308 (440)
                      ...+|+.. ++.|+.+.++....... +..+|.+- |.+|.....-...      + --+..||+.+.+|..+.++.. .
T Consensus        99 dLy~Yn~k-~~eWkk~~spn~P~pRs-shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~-P  175 (521)
T KOG1230|consen   99 DLYSYNTK-KNEWKKVVSPNAPPPRS-SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG-P  175 (521)
T ss_pred             eeeEEecc-ccceeEeccCCCcCCCc-cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC-C
Confidence            35789999 99999987432211111 12245444 6444443332211      1 468999999999999987762 2


Q ss_pred             CCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEE
Q 035860          309 MEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYK  361 (440)
Q Consensus       309 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~  361 (440)
                      .......++.+...|.++..-.+.  ......-=+||+.+-  +...|+++..
T Consensus       176 S~RSGHRMvawK~~lilFGGFhd~--nr~y~YyNDvy~FdL--dtykW~Klep  224 (521)
T KOG1230|consen  176 SPRSGHRMVAWKRQLILFGGFHDS--NRDYIYYNDVYAFDL--DTYKWSKLEP  224 (521)
T ss_pred             CCCccceeEEeeeeEEEEcceecC--CCceEEeeeeEEEec--cceeeeeccC
Confidence            222556788889999988854310  000111236777664  2568999865

>smart00612 Kelch Kelch domain

Probab=85.91  E-value=1.5  Score=28.01  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=18.7

Q ss_pred             cceEEEEEeCCCCCcceeccCCc
Q 035860          235 DYKIAVYTLGKDDSWRIISSSLA  257 (440)
Q Consensus       235 ~~~~~Vyss~~t~~W~~~~~~p~  257 (440)
                      ...+++|+.. ++.|+.++.++.
T Consensus        14 ~~~v~~yd~~-~~~W~~~~~~~~   35 (47)
T smart00612       14 LKSVEVYDPE-TNKWTPLPSMPT   35 (47)
T ss_pred             eeeEEEECCC-CCeEccCCCCCC
Confidence            4568999999 999999887765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=84.67  E-value=0.3  Score=47.36  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=34.4

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCCh
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSH   78 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~   78 (440)
                      -.||.|++..||+-|..++++|++.||+.|+-+..+.
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            5799999999999999999999999999999987763

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=84.35  E-value=2.5  Score=27.72  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=29.0

Q ss_pred             cEEEcCeEEEEEec--CCCC--ceEEEEEEcCCccEEEeeC
Q 035860          267 GVSAYGDMHWISFD--QNNI--HTCIFSFDFNKEEFKKIDL  303 (440)
Q Consensus       267 ~v~~~G~lywl~~~--~~~~--~~~Il~fD~~~e~~~~i~l  303 (440)
                      .+.++|.||.+...  ....  ...+..||+++.+|..++.
T Consensus         7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            67899999999776  2111  3689999999999998754

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=84.01  E-value=36  Score=31.52  Aligned_cols=145  Identities=10%  Similarity=0.022  Sum_probs=83.8

Q ss_pred             ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCc-cEEEeeCCCCCCC
Q 035860          231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKE-EFKKIDLPIDCNM  309 (440)
Q Consensus       231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e-~~~~i~lP~~~~~  309 (440)
                      +.-+...+..|+.. ++.=.....+|... +.  ..-..+|+.+|-++...    ...+.||..+- .-..++.|.    
T Consensus        63 G~yG~S~l~~~d~~-tg~~~~~~~l~~~~-Fg--EGit~~~d~l~qLTWk~----~~~f~yd~~tl~~~~~~~y~~----  130 (264)
T PF05096_consen   63 GLYGQSSLRKVDLE-TGKVLQSVPLPPRY-FG--EGITILGDKLYQLTWKE----GTGFVYDPNTLKKIGTFPYPG----  130 (264)
T ss_dssp             CSTTEEEEEEEETT-TSSEEEEEE-TTT---E--EEEEEETTEEEEEESSS----SEEEEEETTTTEEEEEEE-SS----
T ss_pred             CCCCcEEEEEEECC-CCcEEEEEECCccc-cc--eeEEEECCEEEEEEecC----CeEEEEccccceEEEEEecCC----
Confidence            44457788899999 88755444555422 11  22467899999999998    68999999852 333445553    


Q ss_pred             CCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcE
Q 035860          310 EPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRW  389 (440)
Q Consensus       310 ~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  389 (440)
                        ....|+.-+..|.|...+            =.|+.++.    .......+|....--..      ...+.-...-++.
T Consensus       131 --EGWGLt~dg~~Li~SDGS------------~~L~~~dP----~~f~~~~~i~V~~~g~p------v~~LNELE~i~G~  186 (264)
T PF05096_consen  131 --EGWGLTSDGKRLIMSDGS------------SRLYFLDP----ETFKEVRTIQVTDNGRP------VSNLNELEYINGK  186 (264)
T ss_dssp             --S--EEEECSSCEEEE-SS------------SEEEEE-T----TT-SEEEEEE-EETTEE---------EEEEEEETTE
T ss_pred             --cceEEEcCCCEEEEECCc------------cceEEECC----cccceEEEEEEEECCEE------CCCcEeEEEEcCE
Confidence              334566555566666543            34555653    24666677765422111      1122222222345


Q ss_pred             EEEeecCCCceEEEECCCCcEE
Q 035860          390 MVLDTFRHDNKFVLDLENDDCH  411 (440)
Q Consensus       390 i~l~~~~~~~~~~yd~~~~~~~  411 (440)
                      |+-+.+..+.++..|++|+++.
T Consensus       187 IyANVW~td~I~~Idp~tG~V~  208 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVV  208 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEE
Confidence            8888888889999999999964

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=82.71  E-value=28  Score=35.03  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=47.8

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCC--Cc
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDD--SW  249 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~--~W  249 (440)
                      .++.|+|-+|+||. +|....+.+.+   +       +.+||.+|.    -||++++---+-+.+.-+.|.+. ..  .|
T Consensus        57 DELHvYNTatnqWf-~PavrGDiPpg---c-------AA~GfvcdG----trilvFGGMvEYGkYsNdLYELQ-asRWeW  120 (830)
T KOG4152|consen   57 DELHVYNTATNQWF-APAVRGDIPPG---C-------AAFGFVCDG----TRILVFGGMVEYGKYSNDLYELQ-ASRWEW  120 (830)
T ss_pred             hhhhhhccccceee-cchhcCCCCCc---h-------hhcceEecC----ceEEEEccEeeeccccchHHHhh-hhhhhH
Confidence            46899999999996 45444443333   1       233666664    36777641111234445666666 44  46


Q ss_pred             ceec-c-----CCcccCCCCCcccEEEcCeEEEEEe
Q 035860          250 RIIS-S-----SLALRPDVSYEFGVSAYGDMHWISF  279 (440)
Q Consensus       250 ~~~~-~-----~p~~~~~~~~~~~v~~~G~lywl~~  279 (440)
                      +++. .     +|++.....+  =+.++...|.+..
T Consensus       121 krlkp~~p~nG~pPCPRlGHS--Fsl~gnKcYlFGG  154 (830)
T KOG4152|consen  121 KRLKPKTPKNGPPPCPRLGHS--FSLVGNKCYLFGG  154 (830)
T ss_pred             hhcCCCCCCCCCCCCCccCce--eEEeccEeEEecc
Confidence            6654 2     2222222221  2445667777654

>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]

Probab=82.12  E-value=31  Score=31.41  Aligned_cols=91  Identities=12%  Similarity=-0.022  Sum_probs=59.4

Q ss_pred             CCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCC--------CCCEE
Q 035860          246 DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEP--------RSPSL  316 (440)
Q Consensus       246 t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~--------~~~~L  316 (440)
                      .+.|...-.+|....   ...-|..||.+|+.....    ..|+.||+.++.- ....+|.......        ....+
T Consensus        55 ~~~~~~~~~lp~~~~---gTg~VVynGs~yynk~~t----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~  127 (249)
T KOG3545|consen   55 RGRKAEKYRLPYSWD---GTGHVVYNGSLYYNKAGT----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDL  127 (249)
T ss_pred             ccCcceEEeCCCCcc---ccceEEEcceEEeeccCC----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccc
Confidence            455666656665221   223789999999988666    6899999999543 4456676432211        45677


Q ss_pred             EEeCCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860          317 INLRGNLALVTFPTDDYDGDTEYIWIEIWVLKD  349 (440)
Q Consensus       317 ~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~  349 (440)
                      ++-+..|-++....      .....+.|=.|+.
T Consensus       128 avDE~GLWviYat~------~~~g~iv~skLdp  154 (249)
T KOG3545|consen  128 AVDENGLWVIYATP------ENAGTIVLSKLDP  154 (249)
T ss_pred             eecccceeEEeccc------ccCCcEEeeccCH
Confidence            77777888777655      2445666677765

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=81.24  E-value=44  Score=32.38  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             EEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCC-CCCccEEEEEEeec----cCCCcccceeEE
Q 035860          287 CIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDG-DTEYIWIEIWVLKD----HYERNEWSKAYK  361 (440)
Q Consensus       287 ~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~-~~~~~~l~IW~l~~----~g~~~~W~~~~~  361 (440)
                      ..+.||.++....  .+|. +.........+..+|+|+++......... +.....+++-....    ......|+=. .
T Consensus        87 ~t~vyDt~t~av~--~~P~-l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~-~  162 (342)
T PF07893_consen   87 RTLVYDTDTRAVA--TGPR-LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR-S  162 (342)
T ss_pred             CeEEEECCCCeEe--ccCC-CCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE-c
Confidence            5888998888776  4444 22111334455568899988865310000 00001555544331    1123344432 2


Q ss_pred             eecCCCCCccccccceeeEEEEEEcCcEEEEeecC-CCceEEEECCCCcEEE
Q 035860          362 ISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR-HDNKFVLDLENDDCHL  412 (440)
Q Consensus       362 i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~-~~~~~~yd~~~~~~~~  412 (440)
                      +|.+++...........-...+. +|.-|++.... ..+.+.||.++.+|+.
T Consensus       163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~  213 (342)
T PF07893_consen  163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRK  213 (342)
T ss_pred             CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceee
Confidence            55544432211111101112232 68889996543 1368999999998864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=80.24  E-value=59  Score=31.44  Aligned_cols=121  Identities=16%  Similarity=0.209  Sum_probs=70.8

Q ss_pred             cCeEEEEEecCCCCceEEEEEEcCCcc--EE---EeeCCCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEE
Q 035860          271 YGDMHWISFDQNNIHTCIFSFDFNKEE--FK---KIDLPIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIE  343 (440)
Q Consensus       271 ~G~lywl~~~~~~~~~~Il~fD~~~e~--~~---~i~lP~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~  343 (440)
                      +|...|.+..+.   ..|..|++..+.  +.   .+.+|...    ....++.. +|+ ++++...         ...+.
T Consensus       154 dg~~v~v~dlG~---D~v~~~~~~~~~~~l~~~~~~~~~~G~----GPRh~~f~pdg~~~Yv~~e~---------s~~v~  217 (345)
T PF10282_consen  154 DGRFVYVPDLGA---DRVYVYDIDDDTGKLTPVDSIKVPPGS----GPRHLAFSPDGKYAYVVNEL---------SNTVS  217 (345)
T ss_dssp             TSSEEEEEETTT---TEEEEEEE-TTS-TEEEEEEEECSTTS----SEEEEEE-TTSSEEEEEETT---------TTEEE
T ss_pred             CCCEEEEEecCC---CEEEEEEEeCCCceEEEeeccccccCC----CCcEEEEcCCcCEEEEecCC---------CCcEE
Confidence            466666665543   478888887665  53   34667643    22344444 454 5555533         37899


Q ss_pred             EEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEEC--CCCcEEE
Q 035860          344 IWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDL--ENDDCHL  412 (440)
Q Consensus       344 IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~--~~~~~~~  412 (440)
                      ++.++..  +..++.+.+++...-. . .....-.-+ .+..+|+.+|+.....+.+.+|++  ++++...
T Consensus       218 v~~~~~~--~g~~~~~~~~~~~~~~-~-~~~~~~~~i-~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~  283 (345)
T PF10282_consen  218 VFDYDPS--DGSLTEIQTISTLPEG-F-TGENAPAEI-AISPDGRFLYVSNRGSNSISVFDLDPATGTLTL  283 (345)
T ss_dssp             EEEEETT--TTEEEEEEEEESCETT-S-CSSSSEEEE-EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred             EEeeccc--CCceeEEEEeeecccc-c-cccCCceeE-EEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence            9988842  3478888888754321 1 111111122 344589999998777788999988  4455544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 57/384 (14%), Positives = 104/384 (27%), Gaps = 101/384 (26%)

Query: 82  HAHVMAATEESHH-----LPLNLSA-NRDGVFPYIYD--GHALKQSEHALFPYIYDDNNA 133
           H H+   T E  +     L +   A   +     + D     L + E        D    
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-------IDHIIM 56

Query: 134 LKPGEYPTNLDFSNERDTPIYFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYY 193
            K     T   F          V      F E      ++  L +P++ E  R P +   
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK----FVEEV-LRINYKFLMSPIKTE-QRQPSMMT- 109

Query: 194 CDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPV-------------IELSDYK-IA 239
                  Y   R          D      ++   Y V             +EL   K + 
Sbjct: 110 -----RMYIEQR----------DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 240 VYTL---GKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKE 296
           +  +   GK  +W  +   L+ +     +F +       W++    N    +       E
Sbjct: 155 IDGVLGSGK--TWVALDVCLSYKVQCKMDFKI------FWLNLKNCNSPETVL------E 200

Query: 297 EFKKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEW 356
             +K+   ID N   RS    N++  +                  I+   L+   +   +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIH----------------SIQAE-LRRLLKSKPY 243

Query: 357 SKAYKISTD-QDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDD--CHLR 413
                +  + Q+       + F   C I++        T R   K V D  +     H+ 
Sbjct: 244 ENCLLVLLNVQNAKAW---NAFNLSCKILL--------TTR--FKQVTDFLSAATTTHIS 290

Query: 414 ICPVPKNFDHHDTIRFTGSVLSFK 437
           +          +        L  +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCR 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.02
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.0
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.91
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.85
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.74
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.63
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.6
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.58
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.45
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.66
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.66
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.31
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.28
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	91.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	89.18
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	89.11
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	88.71
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	87.23
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	87.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	84.97
3jro_A	753	Fusion protein of protein transport protein SEC13	83.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	83.03
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	82.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	81.67
3jrp_A	379	Fusion protein of protein transport protein SEC13	80.15

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.16  E-value=4e-09  Score=99.25  Aligned_cols=215  Identities=15%  Similarity=0.053  Sum_probs=134.7

Q ss_pred             EEeeeccEEEeeecC-CCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860          153 IYFVAYGFICFGESS-CHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV  230 (440)
Q Consensus       153 i~~s~~GLlcl~~~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~  230 (440)
                      .....+|.|.+.... ......+.++||.|++|..+|+++.....             +.+..++.     +|+.++ ..
T Consensus        50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~iyv~GG~~  111 (306)
T 3ii7_A           50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-------------LAACAAEG-----KIYTSGGSE  111 (306)
T ss_dssp             EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-------------CEEEEETT-----EEEEECCBB
T ss_pred             EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-------------eeEEEECC-----EEEEECCCC
Confidence            344456666554431 12346789999999999999876654211             11222221     566664 22


Q ss_pred             -ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-----ceEEEEEEcCCccEEEe-eC
Q 035860          231 -IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-----HTCIFSFDFNKEEFKKI-DL  303 (440)
Q Consensus       231 -~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~Il~fD~~~e~~~~i-~l  303 (440)
                       +......+++|+.. ++.|+.++.+|......   ..+.++|.+|.+.......     ...+..||+.+++|..+ ++
T Consensus       112 ~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  187 (306)
T 3ii7_A          112 VGNSALYLFECYDTR-TESWHTKPSMLTQRCSH---GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM  187 (306)
T ss_dssp             TTBSCCCCEEEEETT-TTEEEEECCCSSCCBSC---EEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC
T ss_pred             CCCcEeeeEEEEeCC-CCceEeCCCCcCCccee---EEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc
Confidence             33445679999999 99999998777633222   2678899999987543221     25699999999999998 45


Q ss_pred             CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE
Q 035860          304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI  383 (440)
Q Consensus       304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~  383 (440)
                      |...    ....++.++|+|+++....      .....-+||+++-.  ...|+++..+|...         .. ..+.+
T Consensus       188 p~~r----~~~~~~~~~~~i~v~GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~-~~~~~  245 (306)
T 3ii7_A          188 IEAR----KNHGLVFVKDKIFAVGGQN------GLGGLDNVEYYDIK--LNEWKMVSPMPWKG---------VT-VKCAA  245 (306)
T ss_dssp             SSCC----BSCEEEEETTEEEEECCEE------TTEEBCCEEEEETT--TTEEEECCCCSCCB---------SC-CEEEE
T ss_pred             cchh----hcceEEEECCEEEEEeCCC------CCCCCceEEEeeCC--CCcEEECCCCCCCc---------cc-eeEEE
Confidence            5432    4567788899999998643      11223467777753  46799875444221         11 11222


Q ss_pred             EEcCcEEEEeec----CCCceEEEECCCCcEEE
Q 035860          384 VVAGRWMVLDTF----RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       384 ~~~g~~i~l~~~----~~~~~~~yd~~~~~~~~  412 (440)
                       .++.++++.-.    ..+.+..||+++++|..
T Consensus       246 -~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          246 -VGSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             -ETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             -ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence             25543344211    23467999999999976

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.16  E-value=7.3e-09  Score=97.69  Aligned_cols=215  Identities=11%  Similarity=0.005  Sum_probs=133.5

Q ss_pred             EEeeeccEEEeeecC----C--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEE
Q 035860          153 IYFVAYGFICFGESS----C--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQ  226 (440)
Q Consensus       153 i~~s~~GLlcl~~~~----~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~  226 (440)
                      .+...+|.|.+....    .  .....+.++||.|++|..+|+++.....             .....++.     +|+.
T Consensus        65 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~iyv  126 (308)
T 1zgk_A           65 AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-------------IGVGVIDG-----HIYA  126 (308)
T ss_dssp             EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-------------CEEEEETT-----EEEE
T ss_pred             eEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-------------cEEEEECC-----EEEE
Confidence            344556766655431    0  1134689999999999999977654211             11222221     5666


Q ss_pred             Ee-ccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eC
Q 035860          227 SY-PVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DL  303 (440)
Q Consensus       227 ~~-~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~l  303 (440)
                      ++ ..+......+++|+.. ++.|+.+..+|......   ..+.++|.+|.+....... ...+..||+.+++|..+ ++
T Consensus       127 ~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  202 (308)
T 1zgk_A          127 VGGSHGCIHHNSVERYEPE-RDEWHLVAPMLTRRIGV---GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM  202 (308)
T ss_dssp             ECCEETTEECCCEEEEETT-TTEEEECCCCSSCCBSC---EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC
T ss_pred             EcCCCCCcccccEEEECCC-CCeEeECCCCCccccce---EEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC
Confidence            64 2222334568999999 99999998776532222   2677899999987544221 25799999999999988 44


Q ss_pred             CCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEE
Q 035860          304 PIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSI  383 (440)
Q Consensus       304 P~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~  383 (440)
                      |...    .....+.++|+|+++....      .....-++|+++-.  ...|+++..++...         .....+. 
T Consensus       203 p~~r----~~~~~~~~~~~iyv~GG~~------~~~~~~~v~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~-  260 (308)
T 1zgk_A          203 NTIR----SGAGVCVLHNCIYAAGGYD------GQDQLNSVERYDVE--TETWTFVAPMKHRR---------SALGITV-  260 (308)
T ss_dssp             SSCC----BSCEEEEETTEEEEECCBC------SSSBCCCEEEEETT--TTEEEECCCCSSCC---------BSCEEEE-
T ss_pred             CCcc----ccceEEEECCEEEEEeCCC------CCCccceEEEEeCC--CCcEEECCCCCCCc---------cceEEEE-
Confidence            4432    4456778899999998654      12234567777753  46899876443211         1111222 


Q ss_pred             EEcCcEEEEeec----CCCceEEEECCCCcEEE
Q 035860          384 VVAGRWMVLDTF----RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       384 ~~~g~~i~l~~~----~~~~~~~yd~~~~~~~~  412 (440)
                       .++.++++.-.    ..+.+..||+++++|..
T Consensus       261 -~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          261 -HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             -ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             -ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence             25543344211    13467899999999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.15  E-value=9.6e-09  Score=96.35  Aligned_cols=214  Identities=10%  Similarity=0.014  Sum_probs=133.0

Q ss_pred             EEeeeccEEEeeecCC--CcceeEEEEcccccc---cccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEE
Q 035860          153 IYFVAYGFICFGESSC--HVKDHVHLWNPLRRE---VLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQS  227 (440)
Q Consensus       153 i~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~  227 (440)
                      .....+|.|.+.....  .....++++||.|++   |..+++++.....             .....++    . +|+.+
T Consensus        57 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-------------~~~~~~~----~-~lyv~  118 (301)
T 2vpj_A           57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-------------AGATTLG----D-MIYVS  118 (301)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-------------CEEEEET----T-EEEEE
T ss_pred             cEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-------------eeEEEEC----C-EEEEE
Confidence            3444566665543311  124579999999999   9999877654211             1122222    1 56666


Q ss_pred             e-ccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCC
Q 035860          228 Y-PVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLP  304 (440)
Q Consensus       228 ~-~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP  304 (440)
                      + ..+......+++|+.. ++.|+.++.+|......   ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|
T Consensus       119 GG~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p  194 (301)
T 2vpj_A          119 GGFDGSRRHTSMERYDPN-IDQWSMLGDMQTAREGA---GLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA  194 (301)
T ss_dssp             CCBCSSCBCCEEEEEETT-TTEEEEEEECSSCCBSC---EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred             cccCCCcccceEEEEcCC-CCeEEECCCCCCCcccc---eEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC
Confidence            4 2222335679999999 99999998776532222   2677899999987543221 25799999999999988 445


Q ss_pred             CCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEE
Q 035860          305 IDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIV  384 (440)
Q Consensus       305 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~  384 (440)
                      ...    ....++..+|+|+++.....      ....-+||+++-.  ...|+++..+|...         .....+.  
T Consensus       195 ~~r----~~~~~~~~~~~i~v~GG~~~------~~~~~~v~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--  251 (301)
T 2vpj_A          195 TKR----SGAGVALLNDHIYVVGGFDG------TAHLSSVEAYNIR--TDSWTTVTSMTTPR---------CYVGATV--  251 (301)
T ss_dssp             SCC----BSCEEEEETTEEEEECCBCS------SSBCCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--
T ss_pred             ccc----ccceEEEECCEEEEEeCCCC------CcccceEEEEeCC--CCcEEECCCCCCcc---------cceeEEE--
Confidence            432    45577888999999986541      1123467777653  46899875443221         1112222  


Q ss_pred             EcCcEEEE-eecC----CCceEEEECCCCcEEE
Q 035860          385 VAGRWMVL-DTFR----HDNKFVLDLENDDCHL  412 (440)
Q Consensus       385 ~~g~~i~l-~~~~----~~~~~~yd~~~~~~~~  412 (440)
                      .+|. |++ .-..    .+.+..||+++++|..
T Consensus       252 ~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          252 LRGR-LYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             ETTE-EEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             ECCE-EEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            2555 554 2111    1356899999999875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.14  E-value=1.1e-08  Score=95.97  Aligned_cols=214  Identities=10%  Similarity=0.031  Sum_probs=132.7

Q ss_pred             EeeeccEEEeeecCC--CcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc
Q 035860          154 YFVAYGFICFGESSC--HVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV  230 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~  230 (440)
                      +...+|.|.+.....  .....+.++||.|++|..+|+++.....             +.+..++    . +|+.++ ..
T Consensus        57 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~----~-~iyv~GG~~  118 (302)
T 2xn4_A           57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-------------LGAAVLN----G-LLYAVGGFD  118 (302)
T ss_dssp             EEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-------------CEEEEET----T-EEEEEEEEC
T ss_pred             EEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-------------eEEEEEC----C-EEEEEcCCC
Confidence            344566665544311  1235789999999999999977654211             1122222    1 566554 22


Q ss_pred             ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC---ceEEEEEEcCCccEEEe-eCCCC
Q 035860          231 IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI---HTCIFSFDFNKEEFKKI-DLPID  306 (440)
Q Consensus       231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~Il~fD~~~e~~~~i-~lP~~  306 (440)
                      +......+++|+.. ++.|+.++.+|......   ..+.++|.+|-+.......   ...+..||+.+++|..+ ++|..
T Consensus       119 ~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  194 (302)
T 2xn4_A          119 GSTGLSSVEAYNIK-SNEWFHVAPMNTRRSSV---GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR  194 (302)
T ss_dssp             SSCEEEEEEEEETT-TTEEEEECCCSSCCBSC---EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC
T ss_pred             CCccCceEEEEeCC-CCeEeecCCCCCcccCc---eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc
Confidence            22334578999999 99999998776532222   2678899999986543221   24699999999999988 45543


Q ss_pred             CCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEc
Q 035860          307 CNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVA  386 (440)
Q Consensus       307 ~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  386 (440)
                      .    ....++..+|+|+++....      .....-++|+++-.  ...|+++..++...         .....+.  .+
T Consensus       195 r----~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~~~~r---------~~~~~~~--~~  251 (302)
T 2xn4_A          195 R----SGAGVGVLNNLLYAVGGHD------GPLVRKSVEVYDPT--TNAWRQVADMNMCR---------RNAGVCA--VN  251 (302)
T ss_dssp             C----BSCEEEEETTEEEEECCBS------SSSBCCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ET
T ss_pred             c----ccccEEEECCEEEEECCCC------CCcccceEEEEeCC--CCCEeeCCCCCCcc---------ccCeEEE--EC
Confidence            2    4457788899999998654      11223467887753  46899876443221         1112222  25


Q ss_pred             CcEEEEeec----CCCceEEEECCCCcEEE
Q 035860          387 GRWMVLDTF----RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       387 g~~i~l~~~----~~~~~~~yd~~~~~~~~  412 (440)
                      |.++++.-.    ..+.+..||+++++|..
T Consensus       252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          252 GLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            543334211    12457999999999875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.08  E-value=2.1e-08  Score=94.92  Aligned_cols=195  Identities=12%  Similarity=0.110  Sum_probs=124.3

Q ss_pred             eEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-cc--ccCCcceEEEEEeCCCCCc
Q 035860          173 HVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PV--IELSDYKIAVYTLGKDDSW  249 (440)
Q Consensus       173 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~--~~~~~~~~~Vyss~~t~~W  249 (440)
                      .++++||.|++|..+|+++.....             + ++...   +. +|+.++ ..  +......+++|+.. ++.|
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W  139 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPSARCL-------------F-GLGEV---DD-KIYVVAGKDLQTEASLDSVLCYDPV-AAKW  139 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSSCBCS-------------C-EEEEE---TT-EEEEEEEEBTTTCCEEEEEEEEETT-TTEE
T ss_pred             cEEEEeCCCCcEEECCCCCccccc-------------c-ceEEE---CC-EEEEEcCccCCCCcccceEEEEeCC-CCCE
Confidence            388999999999999876654211             1 22222   11 466664 11  22344578999999 9999


Q ss_pred             ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEE
Q 035860          250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALV  326 (440)
Q Consensus       250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv  326 (440)
                      +.+..+|......   ..+.++|.+|.+.......  ...+..||+.+.+|..+ ++|...    .....+..+|+|+++
T Consensus       140 ~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~  212 (318)
T 2woz_A          140 SEVKNLPIKVYGH---NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----SMFGVAIHKGKIVIA  212 (318)
T ss_dssp             EEECCCSSCEESC---EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEE
T ss_pred             eECCCCCCccccc---EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----ccceEEEECCEEEEE
Confidence            9998777633222   2677999999987542211  25699999999999988 445432    445678889999999


Q ss_pred             EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEee------------
Q 035860          327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDT------------  394 (440)
Q Consensus       327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~------------  394 (440)
                      ....      .....-++|+++-.  ...|+++..+|...         ....++.  .+|.++++.-            
T Consensus       213 GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~  273 (318)
T 2woz_A          213 GGVT------EDGLSASVEAFDLK--TNKWEVMTEFPQER---------SSISLVS--LAGSLYAIGGFAMIQLESKEFA  273 (318)
T ss_dssp             EEEE------TTEEEEEEEEEETT--TCCEEECCCCSSCC---------BSCEEEE--ETTEEEEECCBCCBC----CCB
T ss_pred             cCcC------CCCccceEEEEECC--CCeEEECCCCCCcc---------cceEEEE--ECCEEEEECCeeccCCCCceec
Confidence            8654      12234578888753  56899975544321         1112222  2454333311            


Q ss_pred             -cCCCceEEEECCCCcEEE
Q 035860          395 -FRHDNKFVLDLENDDCHL  412 (440)
Q Consensus       395 -~~~~~~~~yd~~~~~~~~  412 (440)
                       ...+.+..||+++++|..
T Consensus       274 ~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          274 PTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             CCBCCCEEEEETTTTEEEE
T ss_pred             cceeeeEEEEeCCCCEehh
Confidence             112567899999999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.06  E-value=2.1e-08  Score=94.76  Aligned_cols=196  Identities=13%  Similarity=0.041  Sum_probs=126.1

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c---cccCCcceEEEEEeCCCC
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P---VIELSDYKIAVYTLGKDD  247 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~---~~~~~~~~~~Vyss~~t~  247 (440)
                      ..++++||.|++|..+|+++.....             + ++...   +. +|+.++ .   .+......+++|+.. ++
T Consensus        67 ~~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~lyv~GG~~~~~~~~~~~~~~~~d~~-~~  127 (315)
T 4asc_A           67 AYFLQFDHLDSEWLGMPPLPSPRCL-------------F-GLGEA---LN-SIYVVGGREIKDGERCLDSVMCYDRL-SF  127 (315)
T ss_dssp             EEEEEEETTTTEEEECCCBSSCEES-------------C-EEEEE---TT-EEEEECCEESSTTCCBCCCEEEEETT-TT
T ss_pred             cceEEecCCCCeEEECCCCCcchhc-------------e-eEEEE---CC-EEEEEeCCcCCCCCcccceEEEECCC-CC
Confidence            3489999999999999887654211             1 22222   11 566664 1   123455679999999 99


Q ss_pred             CcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEE
Q 035860          248 SWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLA  324 (440)
Q Consensus       248 ~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~  324 (440)
                      +|+.++.+|......   ..+.++|.+|.+.......  ...+..||+.+.+|..+ ++|...    .....+..+|+|+
T Consensus       128 ~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iy  200 (315)
T 4asc_A          128 KWGESDPLPYVVYGH---TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----SLFGATVHDGRII  200 (315)
T ss_dssp             EEEECCCCSSCCBSC---EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEE
T ss_pred             cEeECCCCCCcccce---eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----hceEEEEECCEEE
Confidence            999998777633222   2678999999997652221  25799999999999988 455432    4556788899999


Q ss_pred             EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec---------
Q 035860          325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF---------  395 (440)
Q Consensus       325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~---------  395 (440)
                      ++....      .....-++|+++-.  ...|+.+..+|....         ....+.  .+|.++++.-.         
T Consensus       201 v~GG~~------~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~---------~~~~~~--~~~~l~v~GG~~~~~~~~~~  261 (315)
T 4asc_A          201 VAAGVT------DTGLTSSAEVYSIT--DNKWAPFEAFPQERS---------SLSLVS--LVGTLYAIGGFATLETESGE  261 (315)
T ss_dssp             EEEEEC------SSSEEEEEEEEETT--TTEEEEECCCSSCCB---------SCEEEE--ETTEEEEEEEEEEEECTTSC
T ss_pred             EEeccC------CCCccceEEEEECC--CCeEEECCCCCCccc---------ceeEEE--ECCEEEEECCccccCcCCcc
Confidence            998764      12234578888763  568998854432211         111222  24443333111         


Q ss_pred             ----CCCceEEEECCCCcEEE
Q 035860          396 ----RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       396 ----~~~~~~~yd~~~~~~~~  412 (440)
                          ..+.+..||+++++|..
T Consensus       262 ~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          262 LVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEEEEEEEEEEEETTTTEEEE
T ss_pred             ccccccCcEEEecCCCChhhh
Confidence                11356899999999874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.03  E-value=5.6e-08  Score=91.06  Aligned_cols=196  Identities=12%  Similarity=0.080  Sum_probs=125.0

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCC-
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDS-  248 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~-  248 (440)
                      ...+.++||.|++|..+|.++.....             +.....+.     +|+.++ ..+......+++|+.. ++. 
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~l~v~GG~~~~~~~~~~~~~d~~-~~~~   90 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRY-------------VASVSLHD-----RIYVIGGYDGRSRLSSVECLDYT-ADED   90 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS-------------CEEEEETT-----EEEEECCBCSSCBCCCEEEEETT-CCTT
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhcc-------------ccEEEECC-----EEEEEcCCCCCccCceEEEEECC-CCCC
Confidence            35789999999999999876553211             11222221     566664 2223344578999999 999 


Q ss_pred             --cceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEE
Q 035860          249 --WRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLA  324 (440)
Q Consensus       249 --W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~  324 (440)
                        |+.+..+|......   ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|...    .....+..+|+|+
T Consensus        91 ~~W~~~~~~p~~r~~~---~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iy  163 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLA---GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR----EGAGLVVASGVIY  163 (301)
T ss_dssp             CCCEEECCCSSCCBSC---EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC----BSCEEEEETTEEE
T ss_pred             CeeEECCCCCCCccce---eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc----ccceEEEECCEEE
Confidence              99998777633222   2677899999987644322 25799999999999988 555432    4456778899999


Q ss_pred             EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ecC----CCc
Q 035860          325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TFR----HDN  399 (440)
Q Consensus       325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~~----~~~  399 (440)
                      ++....      .....-++|+++-.  ...|+++..+|...         .. ..+.. .++. |++. -..    .+.
T Consensus       164 v~GG~~------~~~~~~~~~~~d~~--~~~W~~~~~~p~~r---------~~-~~~~~-~~~~-i~v~GG~~~~~~~~~  223 (301)
T 2vpj_A          164 CLGGYD------GLNILNSVEKYDPH--TGHWTNVTPMATKR---------SG-AGVAL-LNDH-IYVVGGFDGTAHLSS  223 (301)
T ss_dssp             EECCBC------SSCBCCCEEEEETT--TTEEEEECCCSSCC---------BS-CEEEE-ETTE-EEEECCBCSSSBCCC
T ss_pred             EECCCC------CCcccceEEEEeCC--CCcEEeCCCCCccc---------cc-ceEEE-ECCE-EEEEeCCCCCcccce
Confidence            998654      11234467777753  46899874433211         11 11122 2454 5542 111    356


Q ss_pred             eEEEECCCCcEEE
Q 035860          400 KFVLDLENDDCHL  412 (440)
Q Consensus       400 ~~~yd~~~~~~~~  412 (440)
                      +..||+++++|..
T Consensus       224 v~~yd~~~~~W~~  236 (301)
T 2vpj_A          224 VEAYNIRTDSWTT  236 (301)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             EEEEeCCCCcEEE
Confidence            8999999999874

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.02  E-value=8.4e-08  Score=89.93  Aligned_cols=199  Identities=12%  Similarity=0.039  Sum_probs=124.8

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCc
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSW  249 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W  249 (440)
                      ...+.++||.+++|..+++++.....             . ++...   +. +|+.++ ..+......+++|+.. ++.|
T Consensus        29 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~lyv~GG~~~~~~~~~~~~~d~~-~~~W   89 (302)
T 2xn4_A           29 IRSVECYDFKEERWHQVAELPSRRCR-------------A-GMVYM---AG-LVFAVGGFNGSLRVRTVDSYDPV-KDQW   89 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBS-------------C-EEEEE---TT-EEEEESCBCSSSBCCCEEEEETT-TTEE
T ss_pred             CCcEEEEcCcCCcEeEcccCCccccc-------------c-eEEEE---CC-EEEEEeCcCCCccccceEEECCC-CCce
Confidence            35689999999999999876654211             1 22221   11 466664 2222334578999999 9999


Q ss_pred             ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEE
Q 035860          250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVT  327 (440)
Q Consensus       250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~  327 (440)
                      +.+..+|......   ..+.++|.+|-+....... ...+..||+.+.+|..+ ++|...    .....+.++|+|+++.
T Consensus        90 ~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~G  162 (302)
T 2xn4_A           90 TSVANMRDRRSTL---GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR----SSVGVGVVGGLLYAVG  162 (302)
T ss_dssp             EEECCCSSCCBSC---EEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEEC
T ss_pred             eeCCCCCccccce---EEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc----cCceEEEECCEEEEEe
Confidence            9998877633322   2677899999997654332 25789999999999998 445432    4456778899999998


Q ss_pred             cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec----CCCceEEE
Q 035860          328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF----RHDNKFVL  403 (440)
Q Consensus       328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~----~~~~~~~y  403 (440)
                      ....    ......-++|.++-.  ...|+++..+|...         .....+.  .++.++++.-.    ..+.+..|
T Consensus       163 G~~~----~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~y  225 (302)
T 2xn4_A          163 GYDV----ASRQCLSTVECYNAT--TNEWTYIAEMSTRR---------SGAGVGV--LNNLLYAVGGHDGPLVRKSVEVY  225 (302)
T ss_dssp             CEET----TTTEECCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ETTEEEEECCBSSSSBCCCEEEE
T ss_pred             CCCC----CCCccccEEEEEeCC--CCcEEECCCCcccc---------ccccEEE--ECCEEEEECCCCCCcccceEEEE
Confidence            6531    000113357777653  46899985443211         1111222  25543334211    13468999


Q ss_pred             ECCCCcEEE
Q 035860          404 DLENDDCHL  412 (440)
Q Consensus       404 d~~~~~~~~  412 (440)
                      |+++++|..
T Consensus       226 d~~~~~W~~  234 (302)
T 2xn4_A          226 DPTTNAWRQ  234 (302)
T ss_dssp             ETTTTEEEE
T ss_pred             eCCCCCEee
Confidence            999999874

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.01  E-value=8.9e-11  Score=79.71  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=38.8

Q ss_pred             CCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHH
Q 035860           41 SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAH   82 (440)
Q Consensus        41 ~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~   82 (440)
                      ...||+|++.+||++||+++++++++|||+|+.++.++.|.+
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            479999999999999999999999999999999999988754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.00  E-value=4.8e-08  Score=91.78  Aligned_cols=200  Identities=10%  Similarity=0.032  Sum_probs=125.2

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~  250 (440)
                      ...+.++||.|++|..+++++.....             +....++.     +|+.++-........+++|+.. ++.|+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~~~~~~~~-----~lyv~GG~~~~~~~~~~~~d~~-~~~W~   83 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRD-------------AACVFWDN-----VVYILGGSQLFPIKRMDCYNVV-KDSWY   83 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBS-------------CEEEEETT-----EEEEECCBSSSBCCEEEEEETT-TTEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccce-------------eEEEEECC-----EEEEEeCCCCCCcceEEEEeCC-CCeEE
Confidence            36789999999999999877654211             11222221     4666641113445678999999 99999


Q ss_pred             eeccCCcccCCCCCcccEEEcCeEEEEEecCCCC--ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEE
Q 035860          251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI--HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVT  327 (440)
Q Consensus       251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~  327 (440)
                      .+..+|......   ..+.++|.+|.+.......  ...+..||+.+.+|..+ ++|...    .....+.++|+|+++.
T Consensus        84 ~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~G  156 (306)
T 3ii7_A           84 SKLGPPTPRDSL---AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CSHGMVEANGLIYVCG  156 (306)
T ss_dssp             EEECCSSCCBSC---EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEEC
T ss_pred             ECCCCCccccce---eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ceeEEEEECCEEEEEC
Confidence            998877533322   2678899999987654221  25799999999999988 455432    4456778899999998


Q ss_pred             cCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe-ec----CCCceEE
Q 035860          328 FPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD-TF----RHDNKFV  402 (440)
Q Consensus       328 ~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~-~~----~~~~~~~  402 (440)
                      .....  .......-++|+++-.  ...|+++..++...         .....+.  .++. |++. -.    ..+.+..
T Consensus       157 G~~~~--~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~~~-i~v~GG~~~~~~~~~~~~  220 (306)
T 3ii7_A          157 GSLGN--NVSGRVLNSCEVYDPA--TETWTELCPMIEAR---------KNHGLVF--VKDK-IFAVGGQNGLGGLDNVEY  220 (306)
T ss_dssp             CEESC--TTTCEECCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ETTE-EEEECCEETTEEBCCEEE
T ss_pred             CCCCC--CCcccccceEEEeCCC--CCeEEECCCccchh---------hcceEEE--ECCE-EEEEeCCCCCCCCceEEE
Confidence            64310  0000014467777653  46899875433211         1111222  2454 5442 11    1246799


Q ss_pred             EECCCCcEEE
Q 035860          403 LDLENDDCHL  412 (440)
Q Consensus       403 yd~~~~~~~~  412 (440)
                      ||+++++|..
T Consensus       221 yd~~~~~W~~  230 (306)
T 3ii7_A          221 YDIKLNEWKM  230 (306)
T ss_dssp             EETTTTEEEE
T ss_pred             eeCCCCcEEE
Confidence            9999999875

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.00  E-value=1.2e-10  Score=107.47  Aligned_cols=48  Identities=19%  Similarity=0.387  Sum_probs=45.3

Q ss_pred             CCCCcHHHHHHHHhcCCcccce-eeeccccchhhhhCChhHHHHHHhhh
Q 035860           41 SMEFPSNIIYNILLRQPVKVLL-RFRCVSKTWSNIIDSHSFAHAHVMAA   88 (440)
Q Consensus        41 ~~~LP~Dll~eIL~RLP~~sL~-R~r~VCK~W~~li~s~~F~~~~~~~~   88 (440)
                      ...||+|||.+||+|||+++|+ ||++|||+|++||+++.|.+.+..+.
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            4789999999999999999999 99999999999999999999988765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.98  E-value=5.1e-08  Score=91.85  Aligned_cols=196  Identities=13%  Similarity=0.064  Sum_probs=123.5

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c----cccCCcceEEEEEeCC
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P----VIELSDYKIAVYTLGK  245 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~----~~~~~~~~~~Vyss~~  245 (440)
                      ...+.++||.|++|..+++++.....             . ++...   +. +|+.++ .    .+......+++|+.. 
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~-------------~-~~~~~---~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~-   98 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSG-------------L-AGCVV---GG-LLYAVGGRNNSPDGNTDSSALDCYNPM-   98 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS-------------C-EEEEE---TT-EEEEECCEEEETTEEEECCCEEEEETT-
T ss_pred             cceEEEEcCCCCeEeECCCCCccccc-------------c-eEEEE---CC-EEEEECCCcCCCCCCeecceEEEECCC-
Confidence            46789999999999999876654211             1 22211   11 455553 1    222234568999999 


Q ss_pred             CCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeE
Q 035860          246 DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNL  323 (440)
Q Consensus       246 t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L  323 (440)
                      ++.|+.+..+|......   ..+.++|.+|.+....... ...+..||+.+.+|..+ ++|...    .....+.++|+|
T Consensus        99 ~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~i  171 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRI---GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR----IGVGVAVLNRLL  171 (308)
T ss_dssp             TTEEEECCCCSSCCBTC---EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEE
T ss_pred             CCeEeECCCCCcCcccc---EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc----cceEEEEECCEE
Confidence            99999998777633222   2677899999986533221 24689999999999988 555432    445677789999


Q ss_pred             EEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEee-c----CCC
Q 035860          324 ALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDT-F----RHD  398 (440)
Q Consensus       324 ~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~-~----~~~  398 (440)
                      +++.....      ....-++|.++-.  ...|+++..+|..         ......+.  .++. |++.- .    ..+
T Consensus       172 yv~GG~~~------~~~~~~~~~yd~~--~~~W~~~~~~p~~---------r~~~~~~~--~~~~-iyv~GG~~~~~~~~  231 (308)
T 1zgk_A          172 YAVGGFDG------TNRLNSAECYYPE--RNEWRMITAMNTI---------RSGAGVCV--LHNC-IYAAGGYDGQDQLN  231 (308)
T ss_dssp             EEECCBCS------SCBCCCEEEEETT--TTEEEECCCCSSC---------CBSCEEEE--ETTE-EEEECCBCSSSBCC
T ss_pred             EEEeCCCC------CCcCceEEEEeCC--CCeEeeCCCCCCc---------cccceEEE--ECCE-EEEEeCCCCCCccc
Confidence            99986541      1123457777653  4689987544321         11111222  2444 55421 1    135


Q ss_pred             ceEEEECCCCcEEE
Q 035860          399 NKFVLDLENDDCHL  412 (440)
Q Consensus       399 ~~~~yd~~~~~~~~  412 (440)
                      .+..||+++++|..
T Consensus       232 ~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          232 SVERYDVETETWTF  245 (308)
T ss_dssp             CEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCcEEE
Confidence            68999999999875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.91  E-value=1.3e-07  Score=90.92  Aligned_cols=180  Identities=12%  Similarity=0.045  Sum_probs=110.5

Q ss_pred             EEeeeccEEEeeecCCCcceeEEEEccc--ccccccCCCCC-CCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-
Q 035860          153 IYFVAYGFICFGESSCHVKDHVHLWNPL--RREVLRLPKLG-YYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-  228 (440)
Q Consensus       153 i~~s~~GLlcl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-  228 (440)
                      ..+..+|-|.+....  ....++++||.  +++|..+|+++ .....             ..+..++.     +|+.++ 
T Consensus        14 ~~~~~~~~iyv~GG~--~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-------------~~~~~~~~-----~lyv~GG   73 (357)
T 2uvk_A           14 TGAIDNDTVYIGLGS--AGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-------------ATSAFIDG-----NLYVFGG   73 (357)
T ss_dssp             EEEEETTEEEEECGG--GTTCEEEEETTSSSCCEEECCCCTTCCCBS-------------CEEEEETT-----EEEEECC
T ss_pred             EEEEECCEEEEEeCc--CCCeEEEEccccCCCCeeECCCCCCCcCcc-------------ceEEEECC-----EEEEEcC
Confidence            444457777665541  23579999998  49999998866 33211             11222221     466664 


Q ss_pred             c-c----ccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCC--------------------
Q 035860          229 P-V----IELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNN--------------------  283 (440)
Q Consensus       229 ~-~----~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~--------------------  283 (440)
                      . .    .......+++|+.. ++.|+.+..+++.....  ...+.++|.+|.+......                    
T Consensus        74 ~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  150 (357)
T 2uvk_A           74 IGKNSEGLTQVFNDVHKYNPK-TNSWVKLMSHAPMGMAG--HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID  150 (357)
T ss_dssp             EEECTTSCEEECCCEEEEETT-TTEEEECSCCCSSCCSS--EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCCCccceeeccEEEEeCC-CCcEEECCCCCCccccc--ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchh
Confidence            1 1    11234568999999 99999998776211111  1256799999998864311                    


Q ss_pred             ---------------CceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEe
Q 035860          284 ---------------IHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVL  347 (440)
Q Consensus       284 ---------------~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l  347 (440)
                                     ....+..||+.+.+|..+ ++|....   ....++..+|+|+++.....     .....-++|.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~~~~iyv~GG~~~-----~~~~~~~v~~~  222 (357)
T 2uvk_A          151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNKGDKTWLINGEAK-----PGLRTDAVFEL  222 (357)
T ss_dssp             HHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC---BSCEEEEETTEEEEECCEEE-----TTEECCCEEEE
T ss_pred             hhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc---ccccEEEECCEEEEEeeecC-----CCcccCceEEE
Confidence                           014899999999999988 5564321   23578888999999975430     11123467776


Q ss_pred             eccCCCcccceeEEee
Q 035860          348 KDHYERNEWSKAYKIS  363 (440)
Q Consensus       348 ~~~g~~~~W~~~~~i~  363 (440)
                      +-......|+++..++
T Consensus       223 d~d~~~~~W~~~~~~~  238 (357)
T 2uvk_A          223 DFTGNNLKWNKLAPVS  238 (357)
T ss_dssp             ECC---CEEEECCCSS
T ss_pred             EecCCCCcEEecCCCC
Confidence            5211246899876553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.85  E-value=3.9e-07  Score=85.95  Aligned_cols=198  Identities=9%  Similarity=0.057  Sum_probs=118.4

Q ss_pred             eeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-c----ccc--CCcceEEEEEeC
Q 035860          172 DHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-P----VIE--LSDYKIAVYTLG  244 (440)
Q Consensus       172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~----~~~--~~~~~~~Vyss~  244 (440)
                      ..+.++||.|++|.. ++++...+..           .+ +....  .+  +|+.++ .    ...  .....+++|+..
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~-----------~~-~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~   75 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKN-----------HV-SLVTK--EN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHL   75 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSS-----------EE-EEECT--TC--CEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred             CceEEECCCCCeEec-CCCCCCCCcc-----------ce-EEEEE--CC--EEEEEcCcccCCCCCccccccceEEecCC
Confidence            578999999999986 3332211111           01 22221  11  344443 1    111  112338899999


Q ss_pred             CCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC----CCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe
Q 035860          245 KDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN----NIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL  319 (440)
Q Consensus       245 ~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~  319 (440)
                       +++|+.++.+|......   ..+.++|.+|.+.....    .....+..||+.+.+|..+ ++|...    .....+..
T Consensus        76 -~~~W~~~~~~p~~r~~~---~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~  147 (315)
T 4asc_A           76 -DSEWLGMPPLPSPRCLF---GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----YGHTVLSH  147 (315)
T ss_dssp             -TTEEEECCCBSSCEESC---EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE
T ss_pred             -CCeEEECCCCCcchhce---eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----cceeEEEE
Confidence             99999998777533222   26788999999876431    1135799999999999988 555533    45567789


Q ss_pred             CCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecC---
Q 035860          320 RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFR---  396 (440)
Q Consensus       320 ~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~---  396 (440)
                      +|+|+++.....     .....-++|+++-.  ...|+++..+|...         .. ..+.+ .++.++++.-..   
T Consensus       148 ~~~iyv~GG~~~-----~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~-~~~~~-~~~~iyv~GG~~~~~  209 (315)
T 4asc_A          148 MDLVYVIGGKGS-----DRKCLNKMCVYDPK--KFEWKELAPMQTAR---------SL-FGATV-HDGRIIVAAGVTDTG  209 (315)
T ss_dssp             TTEEEEECCBCT-----TSCBCCCEEEEETT--TTEEEECCCCSSCC---------BS-CEEEE-ETTEEEEEEEECSSS
T ss_pred             CCEEEEEeCCCC-----CCcccceEEEEeCC--CCeEEECCCCCCch---------hc-eEEEE-ECCEEEEEeccCCCC
Confidence            999999987531     12234567888753  46899875443211         11 11112 255433332111   


Q ss_pred             -CCceEEEECCCCcEEE
Q 035860          397 -HDNKFVLDLENDDCHL  412 (440)
Q Consensus       397 -~~~~~~yd~~~~~~~~  412 (440)
                       .+.+..||+++++|..
T Consensus       210 ~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          210 LTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEEEEEEETTTTEEEE
T ss_pred             ccceEEEEECCCCeEEE
Confidence             1357899999999874

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.74  E-value=3.5e-07  Score=86.40  Aligned_cols=207  Identities=9%  Similarity=0.073  Sum_probs=121.2

Q ss_pred             ccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEec---cc-c-
Q 035860          158 YGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYP---VI-E-  232 (440)
Q Consensus       158 ~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~---~~-~-  232 (440)
                      ++.|++...     ..+.++||.|++|...|.+. ..+..           .. ++...   + =+|+.++-   .. . 
T Consensus        15 ~~~i~~~GG-----~~~~~yd~~~~~W~~~~~~~-~~~r~-----------~~-~~~~~---~-~~lyv~GG~~~~~~~~   72 (318)
T 2woz_A           15 KDLILLVND-----TAAVAYDPMENECYLTALAE-QIPRN-----------HS-SIVTQ---Q-NQVYVVGGLYVDEENK   72 (318)
T ss_dssp             EEEEEEECS-----SEEEEEETTTTEEEEEEECT-TSCSS-----------EE-EEECS---S-SCEEEEESSCC-----
T ss_pred             cchhhhccc-----cceEEECCCCCceecccCCc-cCCcc-----------ce-EEEEE---C-CEEEEECCcccCcccc
Confidence            345554444     35789999999998843221 11111           01 22211   1 13555531   00 0 


Q ss_pred             --CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCC--CC-ceEEEEEEcCCccEEEe-eCCCC
Q 035860          233 --LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQN--NI-HTCIFSFDFNKEEFKKI-DLPID  306 (440)
Q Consensus       233 --~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~--~~-~~~Il~fD~~~e~~~~i-~lP~~  306 (440)
                        .....+++|+.. ++.|+.++.+|......   ..+.++|.+|.+.....  .. ...+..||+.+.+|..+ ++|..
T Consensus        73 ~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  148 (318)
T 2woz_A           73 DQPLQSYFFQLDNV-SSEWVGLPPLPSARCLF---GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK  148 (318)
T ss_dssp             --CCCBEEEEEETT-TTEEEECSCBSSCBCSC---EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC
T ss_pred             CCCccccEEEEeCC-CCcEEECCCCCcccccc---ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc
Confidence              112238899999 99999998777633222   26778999999987642  11 36799999999999988 55553


Q ss_pred             CCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEc
Q 035860          307 CNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVA  386 (440)
Q Consensus       307 ~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  386 (440)
                      .    .....+..+|+|+++.....     .....-++|+++-.  ...|+++..++...         .....+.  .+
T Consensus       149 r----~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~yd~~--~~~W~~~~~~p~~r---------~~~~~~~--~~  206 (318)
T 2woz_A          149 V----YGHNVISHNGMIYCLGGKTD-----DKKCTNRVFIYNPK--KGDWKDLAPMKTPR---------SMFGVAI--HK  206 (318)
T ss_dssp             E----ESCEEEEETTEEEEECCEES-----SSCBCCCEEEEETT--TTEEEEECCCSSCC---------BSCEEEE--ET
T ss_pred             c----cccEEEEECCEEEEEcCCCC-----CCCccceEEEEcCC--CCEEEECCCCCCCc---------ccceEEE--EC
Confidence            3    34466778999999986431     11123457888753  46899875443211         1111222  24


Q ss_pred             CcEEEEeecC----CCceEEEECCCCcEEE
Q 035860          387 GRWMVLDTFR----HDNKFVLDLENDDCHL  412 (440)
Q Consensus       387 g~~i~l~~~~----~~~~~~yd~~~~~~~~  412 (440)
                      +.+.++.-..    .+.+..||+++++|..
T Consensus       207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEV  236 (318)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred             CEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence            5433332111    1356799999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.63  E-value=1.9e-05  Score=77.78  Aligned_cols=46  Identities=13%  Similarity=0.163  Sum_probs=42.1

Q ss_pred             CCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHh
Q 035860           41 SMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVM   86 (440)
Q Consensus        41 ~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~   86 (440)
                      ...||+|++.+||+.|++++|+|+.+|||+|+.++.++.+.+....
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            3689999999999999999999999999999999999988776654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.60  E-value=2.8e-06  Score=83.65  Aligned_cols=46  Identities=22%  Similarity=0.251  Sum_probs=40.9

Q ss_pred             CCCcHH----HHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHhh
Q 035860           42 MEFPSN----IIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMA   87 (440)
Q Consensus        42 ~~LP~D----ll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~~   87 (440)
                      ..||+|    |+..||+.|++++|+|+.+|||+|+.++.++.+.+....+
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~   61 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence            469999    9999999999999999999999999999988777665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.58  E-value=4.7e-06  Score=79.89  Aligned_cols=225  Identities=11%  Similarity=0.076  Sum_probs=125.0

Q ss_pred             cEEeeeccEEEeeecC-C------CcceeEEEEcccccccccCCCCC-CCCCCCCCcccccccccceEEEeeeCCCCCEE
Q 035860          152 PIYFVAYGFICFGESS-C------HVKDHVHLWNPLRREVLRLPKLG-YYCDYQHDYYDAYRGLRGHFGMGYDSATGTYK  223 (440)
Q Consensus       152 ~i~~s~~GLlcl~~~~-~------~~~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~yk  223 (440)
                      ...+..+|-|.+.... .      .....+.++||.|++|..+++++ ..  ..           ...+..++.     +
T Consensus        59 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--r~-----------~~~~~~~~~-----~  120 (357)
T 2uvk_A           59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMG--MA-----------GHVTFVHNG-----K  120 (357)
T ss_dssp             CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSC--CS-----------SEEEEEETT-----E
T ss_pred             ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcc--cc-----------cceEEEECC-----E
Confidence            3445557766654431 0      11357899999999999998866 22  11           121222322     5


Q ss_pred             EEEEe-cccc----------------------------------CCcceEEEEEeCCCCCcceeccCCcccCCCCCcccE
Q 035860          224 IVQSY-PVIE----------------------------------LSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGV  268 (440)
Q Consensus       224 Vv~~~-~~~~----------------------------------~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v  268 (440)
                      |+.++ ....                                  .....+++|+.. ++.|+.+..+|.......  ..+
T Consensus       121 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~~~~~~--~~~  197 (357)
T 2uvk_A          121 AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS-TQQWSYAGESPWYGTAGA--AVV  197 (357)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT-TTEEEEEEECSSCCCBSC--EEE
T ss_pred             EEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC-CCcEEECCCCCCCCcccc--cEE
Confidence            66664 1110                                  123589999999 999999987775322212  267


Q ss_pred             EEcCeEEEEEecCCCC--ceEEEEEEc--CCccEEEe-eCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCC---------
Q 035860          269 SAYGDMHWISFDQNNI--HTCIFSFDF--NKEEFKKI-DLPIDCNMEPRSPSLINLRGNLALVTFPTDDYD---------  334 (440)
Q Consensus       269 ~~~G~lywl~~~~~~~--~~~Il~fD~--~~e~~~~i-~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~---------  334 (440)
                      .++|.+|.+.......  ...+..||+  .+.+|..+ ++|.....  .....+..+|+|+++........         
T Consensus       198 ~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~  275 (357)
T 2uvk_A          198 NKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV--AGGFAGISNDSLIFAGGAGFKGSRENYQNGKN  275 (357)
T ss_dssp             EETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC--BSCEEEEETTEEEEECCEECTTHHHHHHTTCS
T ss_pred             EECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc--ccceEEEECCEEEEEcCccccCCcccccccce
Confidence            8899999986532111  145778877  89999987 44432211  34568889999999986420000         


Q ss_pred             --CCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeec--C---CCceEEEECCC
Q 035860          335 --GDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTF--R---HDNKFVLDLEN  407 (440)
Q Consensus       335 --~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~--~---~~~~~~yd~~~  407 (440)
                        ........++|+++-.  ...|+++..+|....         . ..+ +..++.++++.-.  .   .+.+..|++++
T Consensus       276 ~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~---------~-~~~-~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~  342 (357)
T 2uvk_A          276 YAHEGLKKSYSTDIHLWH--NGKWDKSGELSQGRA---------Y-GVS-LPWNNSLLIIGGETAGGKAVTDSVLITVKD  342 (357)
T ss_dssp             STTTTCCCEECCEEEECC-----CEEEEECSSCCB---------S-SEE-EEETTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred             eccccccceeeEEEEecC--CCceeeCCCCCCCcc---------c-cee-EEeCCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence              0001123567777653  468999866553211         1 111 2235554444211  1   13467799999


Q ss_pred             CcEEE
Q 035860          408 DDCHL  412 (440)
Q Consensus       408 ~~~~~  412 (440)
                      ++|..
T Consensus       343 ~~~~~  347 (357)
T 2uvk_A          343 NKVTV  347 (357)
T ss_dssp             CSCEE
T ss_pred             cEeEe
Confidence            99753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.45  E-value=3.1e-05  Score=76.52  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCC-hhHHHHH
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDS-HSFAHAH   84 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s-~~F~~~~   84 (440)
                      ..||+||+.+||+.||+++|+|+..|||+|+.++.+ +...+.+
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~   59 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   59 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            479999999999999999999999999999999998 6554443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.45  E-value=1.3e-05  Score=83.97  Aligned_cols=219  Identities=10%  Similarity=0.023  Sum_probs=123.3

Q ss_pred             eccEEEeeecCC-CcceeEEEEcccccccccCC-CCCCC-CCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccc-
Q 035860          157 AYGFICFGESSC-HVKDHVHLWNPLRREVLRLP-KLGYY-CDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVI-  231 (440)
Q Consensus       157 ~~GLlcl~~~~~-~~~~~~~V~NP~T~~~~~LP-~~~~~-~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~-  231 (440)
                      .+|-|.+..+.. .....+.++||.|++|..++ +.+.. .+..       +  ..+ +...... +. +|+.++ ... 
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~-------R--~~h-s~~~~~~-~~-~lyv~GG~~~~  463 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA-------R--MCH-TFTTISR-NN-QLLLIGGRKAP  463 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCC-------C--BSC-EEEEETT-TT-EEEEECCBSST
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcc-------c--cce-EEEEEcc-CC-EEEEEcCCCCC
Confidence            566555544311 22457899999999999988 52210 0000       0  012 2222210 11 466664 211 


Q ss_pred             cCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE-cCeEEEEEecCCCCceEEEEEEcCCccEEEee----CCCC
Q 035860          232 ELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA-YGDMHWISFDQNNIHTCIFSFDFNKEEFKKID----LPID  306 (440)
Q Consensus       232 ~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~----lP~~  306 (440)
                      ......+++|+.. ++.|+.+..+|......   .++.+ +|.+|.+.......  .+..||+.+.+|..+.    +|..
T Consensus       464 ~~~~~dv~~yd~~-t~~W~~~~~~p~~R~~h---~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~  537 (695)
T 2zwa_A          464 HQGLSDNWIFDMK-TREWSMIKSLSHTRFRH---SACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQN  537 (695)
T ss_dssp             TCBCCCCEEEETT-TTEEEECCCCSBCCBSC---EEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGS
T ss_pred             CCccccEEEEeCC-CCcEEECCCCCCCcccc---eEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCc
Confidence            1134568999999 99999998877633322   14554 99999987654332  6999999999999885    4543


Q ss_pred             CCCCCCCCEEEEeC---CeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcc------cceeEEeecCCCCCccccccce
Q 035860          307 CNMEPRSPSLINLR---GNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNE------WSKAYKISTDQDGDRIEEEDFF  377 (440)
Q Consensus       307 ~~~~~~~~~L~~~~---G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~------W~~~~~i~~~~~~~~~~~~~~~  377 (440)
                      .    .....+.++   |+|++++....    +.....-++|+++-.  ...      |+++..+|....        ..
T Consensus       538 r----~~~~a~v~~~~~~~iyv~GG~~~----~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~~~R--------~~  599 (695)
T 2zwa_A          538 S----LVSAGLEFDPVSKQGIILGGGFM----DQTTVSDKAIIFKYD--AENATEPITVIKKLQHPLFQR--------YG  599 (695)
T ss_dssp             C----CBSCEEEEETTTTEEEEECCBCT----TSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGGGCC--------BS
T ss_pred             c----cceeEEEEeCCCCEEEEECCcCC----CCCeeeCcEEEEEcc--CCccccceEEEEcCCCCCCCc--------cc
Confidence            3    222333434   88999986531    011123456666543  234      887766442211        11


Q ss_pred             eeEEEEEEcCcEEEEeec-------CCCceEEEECCCCcEEE
Q 035860          378 QYVCSIVVAGRWMVLDTF-------RHDNKFVLDLENDDCHL  412 (440)
Q Consensus       378 ~~~~~~~~~g~~i~l~~~-------~~~~~~~yd~~~~~~~~  412 (440)
                      ...+.. .+|.++++.-.       ..+.+..||+++++|..
T Consensus       600 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~  640 (695)
T 2zwa_A          600 SQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS  640 (695)
T ss_dssp             CEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred             ceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence            122222 22543344211       23568999999999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.66  E-value=0.0017  Score=67.58  Aligned_cols=226  Identities=9%  Similarity=0.004  Sum_probs=116.6

Q ss_pred             EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEee-eCCCCCEEEEEEec--c
Q 035860          154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGY-DSATGTYKIVQSYP--V  230 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~-d~~~~~ykVv~~~~--~  230 (440)
                      ....+|-|.+....  ....+.++||.|++|..+++++..+..             ..+..+ |.     ||++++-  .
T Consensus       249 ~~~~~g~lyv~GG~--~~~~v~~yd~~t~~W~~~~~~~~~R~~-------------~s~~~~~dg-----~iyv~GG~~~  308 (656)
T 1k3i_A          249 SMDGNGQIVVTGGN--DAKKTSLYDSSSDSWIPGPDMQVARGY-------------QSSATMSDG-----RVFTIGGSWS  308 (656)
T ss_dssp             EECTTSCEEEECSS--STTCEEEEEGGGTEEEECCCCSSCCSS-------------CEEEECTTS-----CEEEECCCCC
T ss_pred             cCCCCCCEEEeCCC--CCCceEEecCcCCceeECCCCCccccc-------------cceEEecCC-----eEEEEeCccc
Confidence            33467777666541  134799999999999999876654211             112222 21     4666641  2


Q ss_pred             ccCCcceEEEEEeCCCCCcceeccCCc-ccCCCCCcccEEEcCeEEEEEecCCC-----CceEEEEEEcCCccEEEeeCC
Q 035860          231 IELSDYKIAVYTLGKDDSWRIISSSLA-LRPDVSYEFGVSAYGDMHWISFDQNN-----IHTCIFSFDFNKEEFKKIDLP  304 (440)
Q Consensus       231 ~~~~~~~~~Vyss~~t~~W~~~~~~p~-~~~~~~~~~~v~~~G~lywl~~~~~~-----~~~~Il~fD~~~e~~~~i~lP  304 (440)
                      +......+++|+.. ++.|+.+..... ..........+..+|.+|.+...+..     ....+..||+.++.|.....+
T Consensus       309 ~~~~~~~~e~yd~~-t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~  387 (656)
T 1k3i_A          309 GGVFEKNGEVYSPS-SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK  387 (656)
T ss_dssp             SSSCCCCEEEEETT-TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred             CCcccccceEeCCC-CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence            22244679999999 999998753211 00000111133466777776643211     114789999999998643111


Q ss_pred             CCC----CCCCCCCEEE---EeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeE--EeecCCCCCcccccc
Q 035860          305 IDC----NMEPRSPSLI---NLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAY--KISTDQDGDRIEEED  375 (440)
Q Consensus       305 ~~~----~~~~~~~~L~---~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~--~i~~~~~~~~~~~~~  375 (440)
                      ...    ........-+   ..+|+|+++.................|++.+-  ....|+++.  .|+..         +
T Consensus       388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~mp~~---------R  456 (656)
T 1k3i_A          388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNTVFASNGLYFA---------R  456 (656)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEEEECTTCCSSC---------C
T ss_pred             cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCeeEEccCCCCCC---------c
Confidence            100    0000111222   24789999986431000000112234555543  245798764  33321         1


Q ss_pred             ceeeEEEEEEcCcEEEEeecC----------CCceEEEECCCCcEEE
Q 035860          376 FFQYVCSIVVAGRWMVLDTFR----------HDNKFVLDLENDDCHL  412 (440)
Q Consensus       376 ~~~~~~~~~~~g~~i~l~~~~----------~~~~~~yd~~~~~~~~  412 (440)
                      ..... .+..+|.++++.-..          ...+.+||+++++|..
T Consensus       457 ~~~~~-~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~  502 (656)
T 1k3i_A          457 TFHTS-VVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK  502 (656)
T ss_dssp             BSCEE-EECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred             ccCCe-EECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence            11111 121255544442111          2457999999999875

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.66  E-value=1.6e-05  Score=72.57  Aligned_cols=49  Identities=10%  Similarity=0.179  Sum_probs=44.8

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHhhhcc
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMAATE   90 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~~~~~   90 (440)
                      ..||+|++..||+.|++++|+|+.+|||+|+.+..++.-.+.++.+..+
T Consensus         6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            5799999999999999999999999999999999999988887776544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.63  E-value=0.00032  Score=73.03  Aligned_cols=203  Identities=6%  Similarity=-0.079  Sum_probs=110.8

Q ss_pred             EEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccc------cCCcceEEEEEeCCC
Q 035860          174 VHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVI------ELSDYKIAVYTLGKD  246 (440)
Q Consensus       174 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~------~~~~~~~~Vyss~~t  246 (440)
                      +...+|.+++|..+++++..   .            . +..+.+..+  ||+.++ ...      ......+++|+.. +
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~---~------------~-~~av~~~~g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t  228 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIV---P------------A-AAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPS-T  228 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSC---C------------S-EEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTT-T
T ss_pred             cccCCCCCCeeeeeccCCCC---c------------e-eEEEEecCC--EEEEEecccccccccCCCCeEEEEEEeCC-C
Confidence            34568999999987765542   1            1 222222111  566654 111      1122368999999 9


Q ss_pred             CCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe-CCeEE
Q 035860          247 DSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL-RGNLA  324 (440)
Q Consensus       247 ~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~  324 (440)
                      +.|+.+..+|......+....+..||.+|-+.....   ..+..||+.+++|..+ ++|...    .....+.+ +|+|+
T Consensus       229 ~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~---~~v~~yd~~t~~W~~~~~~~~~R----~~~s~~~~~dg~iy  301 (656)
T 1k3i_A          229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVAR----GYQSSATMSDGRVF  301 (656)
T ss_dssp             CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSCC----SSCEEEECTTSCEE
T ss_pred             CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC---CceEEecCcCCceeECCCCCccc----cccceEEecCCeEE
Confidence            999998766553333332112346899998876442   2699999999999987 344322    45567788 89999


Q ss_pred             EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCC-Cc---cccccceeeEEEEEEcCcEEEEeecCCCce
Q 035860          325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDG-DR---IEEEDFFQYVCSIVVAGRWMVLDTFRHDNK  400 (440)
Q Consensus       325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~-~~---~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~  400 (440)
                      ++.....     .....-++|+.+-.  ...|+.+..+...++. ..   .....-..++.+. .+|. ++.. ...+.+
T Consensus       302 v~GG~~~-----~~~~~~~~e~yd~~--t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~-~~~~-~~~~~v  371 (656)
T 1k3i_A          302 TIGGSWS-----GGVFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGS-VFQA-GPSTAM  371 (656)
T ss_dssp             EECCCCC-----SSSCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGC-EEEC-CSSSEE
T ss_pred             EEeCccc-----CCcccccceEeCCC--CCcceeCCCccccccccccccceeecCCceEEEEC-CCCc-EEEe-cCccce
Confidence            9987321     11112234444432  4579886322111111 00   0000001122221 1333 3322 223578


Q ss_pred             EEEECCCCcEEE
Q 035860          401 FVLDLENDDCHL  412 (440)
Q Consensus       401 ~~yd~~~~~~~~  412 (440)
                      .+||+++++|+.
T Consensus       372 ~~yd~~~~~w~~  383 (656)
T 1k3i_A          372 NWYYTSGSGDVK  383 (656)
T ss_dssp             EEEECSTTCEEE
T ss_pred             eeeecCCcceee
Confidence            999999999764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.31  E-value=5.3e-05  Score=71.73  Aligned_cols=42  Identities=19%  Similarity=0.354  Sum_probs=37.8

Q ss_pred             ccCCCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhH
Q 035860           39 LCSMEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF   80 (440)
Q Consensus        39 ~~~~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F   80 (440)
                      .....||+|++.+||.+|+.+++++++.|||+|+.++.++..
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            335899999999999999999999999999999999877653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.30  E-value=0.0038  Score=65.27  Aligned_cols=175  Identities=9%  Similarity=-0.025  Sum_probs=104.9

Q ss_pred             cEEeee--ccEEEeeecCCC---cceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEE
Q 035860          152 PIYFVA--YGFICFGESSCH---VKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQ  226 (440)
Q Consensus       152 ~i~~s~--~GLlcl~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~  226 (440)
                      ......  +|-|.+..+...   ....+.++||.|++|..+++++.....             + +...-.   +=+|+.
T Consensus       443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-------------h-~~~~~~---~~~iyv  505 (695)
T 2zwa_A          443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-------------H-SACSLP---DGNVLI  505 (695)
T ss_dssp             CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-------------C-EEEECT---TSCEEE
T ss_pred             eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-------------c-eEEEEc---CCEEEE
Confidence            334444  776655543211   235789999999999999877654211             1 222210   114666


Q ss_pred             EeccccCCcceEEEEEeCCCCCcceecc---CCcccCCCCCcccEEEc---CeEEEEEecCCCC---ceEEEEEEcCCcc
Q 035860          227 SYPVIELSDYKIAVYTLGKDDSWRIISS---SLALRPDVSYEFGVSAY---GDMHWISFDQNNI---HTCIFSFDFNKEE  297 (440)
Q Consensus       227 ~~~~~~~~~~~~~Vyss~~t~~W~~~~~---~p~~~~~~~~~~~v~~~---G~lywl~~~~~~~---~~~Il~fD~~~e~  297 (440)
                      ++-.... . .+++|+.. ++.|..+..   +|......   .++.++   |.+|.+.......   ...+..||+.+.+
T Consensus       506 ~GG~~~~-~-~v~~yd~~-t~~W~~~~~~g~~p~~r~~~---~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          506 LGGVTEG-P-AMLLYNVT-EEIFKDVTPKDEFFQNSLVS---AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCSS-C-SEEEEETT-TTEEEECCCSSGGGGSCCBS---CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCCCCC-C-CEEEEECC-CCceEEccCCCCCCCcccce---eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            6411111 1 89999999 999999875   44322211   146667   8899987653221   2589999999999


Q ss_pred             ------EEEe-eCCCCCCCCCCCCEEEEeC-CeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccc
Q 035860          298 ------FKKI-DLPIDCNMEPRSPSLINLR-GNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWS  357 (440)
Q Consensus       298 ------~~~i-~lP~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~  357 (440)
                            |..+ +.|.. ..  .....+..+ |+|++++.....   ......-+||+++-.  ...|+
T Consensus       580 w~~~~~W~~~~~~p~~-~R--~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~v~~yd~~--t~~W~  639 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLF-QR--YGSQIKYITPRKLLIVGGTSPS---GLFDRTNSIISLDPL--SETLT  639 (695)
T ss_dssp             SSCCEEEEEEEECGGG-CC--BSCEEEEEETTEEEEECCBCSS---CCCCTTTSEEEEETT--TTEEE
T ss_pred             cccceEEEEcCCCCCC-Cc--ccceEEEeCCCEEEEECCccCC---CCCCCCCeEEEEECC--CCeEE
Confidence                  8777 33321 11  445677788 999999865410   000123457777653  46898

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.28  E-value=0.00077  Score=68.91  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CCCCcHHHHHHHHhcCC-cccceeeeccccchhhh
Q 035860           41 SMEFPSNIIYNILLRQP-VKVLLRFRCVSKTWSNI   74 (440)
Q Consensus        41 ~~~LP~Dll~eIL~RLP-~~sL~R~r~VCK~W~~l   74 (440)
                      ...||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            37899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.98  E-value=0.0014  Score=67.08  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=32.0

Q ss_pred             CCCCcHHHHHHHHhcC-Ccccceeeeccccchhhh
Q 035860           41 SMEFPSNIIYNILLRQ-PVKVLLRFRCVSKTWSNI   74 (440)
Q Consensus        41 ~~~LP~Dll~eIL~RL-P~~sL~R~r~VCK~W~~l   74 (440)
                      ...||||++.+||.+| |.+++.++..|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3689999999999999 899999999999999988

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=91.82  E-value=6.5  Score=34.77  Aligned_cols=157  Identities=10%  Similarity=0.004  Sum_probs=93.3

Q ss_pred             EEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEE
Q 035860          212 GMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSF  291 (440)
Q Consensus       212 ~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~f  291 (440)
                      |+.|+.   . .+. . ..+......+.+++.. ++.=.....++.. .+.  ..-...++.+|-++...    ..+..|
T Consensus        25 GL~~~~---~-~Ly-e-stG~~g~S~v~~vD~~-tgkv~~~~~l~~~-~fg--eGi~~~~~~ly~ltw~~----~~v~v~   90 (243)
T 3mbr_X           25 GLFYLR---G-HLY-E-STGETGRSSVRKVDLE-TGRILQRAEVPPP-YFG--AGIVAWRDRLIQLTWRN----HEGFVY   90 (243)
T ss_dssp             EEEEET---T-EEE-E-EECCTTSCEEEEEETT-TCCEEEEEECCTT-CCE--EEEEEETTEEEEEESSS----SEEEEE
T ss_pred             cEEEEC---C-EEE-E-ECCCCCCceEEEEECC-CCCEEEEEeCCCC-cce--eEEEEeCCEEEEEEeeC----CEEEEE
Confidence            788875   2 122 2 1233345788999999 8754333333321 111  11345678899998777    689999


Q ss_pred             EcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCc
Q 035860          292 DFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDR  370 (440)
Q Consensus       292 D~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~  370 (440)
                      |..+.+- ..++.|.      ....|..-+++|++....          .  .|++++-.    .-..+.+|+...... 
T Consensus        91 D~~tl~~~~ti~~~~------~Gwglt~dg~~L~vSdgs----------~--~l~~iDp~----t~~~~~~I~V~~~g~-  147 (243)
T 3mbr_X           91 DLATLTPRARFRYPG------EGWALTSDDSHLYMSDGT----------A--VIRKLDPD----TLQQVGSIKVTAGGR-  147 (243)
T ss_dssp             ETTTTEEEEEEECSS------CCCEEEECSSCEEEECSS----------S--EEEEECTT----TCCEEEEEECEETTE-
T ss_pred             ECCcCcEEEEEeCCC------CceEEeeCCCEEEEECCC----------C--eEEEEeCC----CCeEEEEEEEccCCc-
Confidence            9987554 5667664      234566556688877532          3  37777642    344556666542110 


Q ss_pred             cccccceeeEEEEEE-cCcEEEEeecCCCceEEEECCCCcEE
Q 035860          371 IEEEDFFQYVCSIVV-AGRWMVLDTFRHDNKFVLDLENDDCH  411 (440)
Q Consensus       371 ~~~~~~~~~~~~~~~-~g~~i~l~~~~~~~~~~yd~~~~~~~  411 (440)
                           .+..+..+.. +| .||...+..+.+.+.|++++++.
T Consensus       148 -----~~~~lNeLe~~~G-~lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          148 -----PLDNLNELEWVNG-ELLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             -----ECCCEEEEEEETT-EEEEEETTTTEEEEECTTTCBEE
T ss_pred             -----ccccceeeEEeCC-EEEEEECCCCeEEEEECCCCCEE
Confidence                 0011111112 45 48888888889999999999953

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=89.18  E-value=12  Score=33.46  Aligned_cols=140  Identities=9%  Similarity=0.013  Sum_probs=83.2

Q ss_pred             CcceEEEEEeCCCCCcceeccCCcccCCCCCccc-EEEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCC
Q 035860          234 SDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFG-VSAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEP  311 (440)
Q Consensus       234 ~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~  311 (440)
                      ....+.+++.. ++.=.....++.. .+.   .+ ...++.+|-++...    ..+.+||.++.+- ..++.|.      
T Consensus        63 g~S~v~~vD~~-Tgkv~~~~~l~~~-~Fg---eGit~~g~~ly~ltw~~----~~v~v~D~~t~~~~~ti~~~~------  127 (262)
T 3nol_A           63 GRSSIRKVDIE-SGKTLQQIELGKR-YFG---EGISDWKDKIVGLTWKN----GLGFVWNIRNLRQVRSFNYDG------  127 (262)
T ss_dssp             TEEEEEEECTT-TCCEEEEEECCTT-CCE---EEEEEETTEEEEEESSS----SEEEEEETTTCCEEEEEECSS------
T ss_pred             CCceEEEEECC-CCcEEEEEecCCc-cce---eEEEEeCCEEEEEEeeC----CEEEEEECccCcEEEEEECCC------
Confidence            35678899998 8754322223221 111   13 35677898888766    6899999987554 5677764      


Q ss_pred             CCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEE-EcCcEE
Q 035860          312 RSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIV-VAGRWM  390 (440)
Q Consensus       312 ~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~g~~i  390 (440)
                      ....|..-+++|++....          .  .||+++-.    .-..+.+|+...-..      .+..+..+. .+| .|
T Consensus       128 eG~glt~dg~~L~~SdGs----------~--~i~~iDp~----T~~v~~~I~V~~~g~------~~~~lNELe~~~G-~l  184 (262)
T 3nol_A          128 EGWGLTHNDQYLIMSDGT----------P--VLRFLDPE----SLTPVRTITVTAHGE------ELPELNELEWVDG-EI  184 (262)
T ss_dssp             CCCCEEECSSCEEECCSS----------S--EEEEECTT----TCSEEEEEECEETTE------ECCCEEEEEEETT-EE
T ss_pred             CceEEecCCCEEEEECCC----------C--eEEEEcCC----CCeEEEEEEeccCCc------cccccceeEEECC-EE
Confidence            123455445577766421          2  47888642    344566776542110      001111111 155 58


Q ss_pred             EEeecCCCceEEEECCCCcEE
Q 035860          391 VLDTFRHDNKFVLDLENDDCH  411 (440)
Q Consensus       391 ~l~~~~~~~~~~yd~~~~~~~  411 (440)
                      +...+..+.+...|++++++.
T Consensus       185 yan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEE
T ss_pred             EEEEccCCeEEEEECCCCcEE
Confidence            888888889999999999964

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=89.11  E-value=12  Score=33.57  Aligned_cols=135  Identities=8%  Similarity=0.060  Sum_probs=80.5

Q ss_pred             EEEEEeCCCCCcceeccCCcccCCCCCcccE-EEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCE
Q 035860          238 IAVYTLGKDDSWRIISSSLALRPDVSYEFGV-SAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPS  315 (440)
Q Consensus       238 ~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~  315 (440)
                      +.+++.. ++.=.... ++.. .+.   .|+ ..++.+|-++...    ..+.+||.++.+- ..|+.+.      ....
T Consensus        77 v~~iD~~-Tgkv~~~~-l~~~-~Fg---eGit~~g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~~------eGwG  140 (268)
T 3nok_A           77 LRQLSLE-SAQPVWME-RLGN-IFA---EGLASDGERLYQLTWTE----GLLFTWSGMPPQRERTTRYSG------EGWG  140 (268)
T ss_dssp             EEECCSS-CSSCSEEE-ECTT-CCE---EEEEECSSCEEEEESSS----CEEEEEETTTTEEEEEEECSS------CCCC
T ss_pred             EEEEECC-CCcEEeEE-CCCC-cce---eEEEEeCCEEEEEEccC----CEEEEEECCcCcEEEEEeCCC------ceeE
Confidence            7888888 77543222 3321 111   134 4567788887766    6899999987554 5667654      2234


Q ss_pred             EEEeCCeEEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEE-EcCcEEEEee
Q 035860          316 LINLRGNLALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIV-VAGRWMVLDT  394 (440)
Q Consensus       316 L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~l~~  394 (440)
                      |..-+++|++... .         .  .|++++-.    .=..+.+|+.......      +..+..+. .+| .|+...
T Consensus       141 Lt~Dg~~L~vSdG-s---------~--~l~~iDp~----T~~v~~~I~V~~~g~~------v~~lNeLe~~dG-~lyanv  197 (268)
T 3nok_A          141 LCYWNGKLVRSDG-G---------T--MLTFHEPD----GFALVGAVQVKLRGQP------VELINELECANG-VIYANI  197 (268)
T ss_dssp             EEEETTEEEEECS-S---------S--EEEEECTT----TCCEEEEEECEETTEE------CCCEEEEEEETT-EEEEEE
T ss_pred             EecCCCEEEEECC-C---------C--EEEEEcCC----CCeEEEEEEeCCCCcc------cccccccEEeCC-EEEEEE
Confidence            6655667777653 1         2  57777642    3345666665431110      01111111 155 588888


Q ss_pred             cCCCceEEEECCCCcEE
Q 035860          395 FRHDNKFVLDLENDDCH  411 (440)
Q Consensus       395 ~~~~~~~~yd~~~~~~~  411 (440)
                      +..+.+...|++++++.
T Consensus       198 w~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             TTCSEEEEECTTTCBEE
T ss_pred             CCCCeEEEEeCCCCcEE
Confidence            88889999999999953

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=88.71  E-value=8.1  Score=35.34  Aligned_cols=122  Identities=8%  Similarity=0.079  Sum_probs=65.5

Q ss_pred             cCeEEEEEecCCCCceEEEEEEcCCccEEEeeC-CCCCCCCCCCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEe
Q 035860          271 YGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDL-PIDCNMEPRSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVL  347 (440)
Q Consensus       271 ~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~l-P~~~~~~~~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l  347 (440)
                      +|.+|........  ..|..||+.+++...+.. +....   ....|... +|+ |++.....         ..+.+|.+
T Consensus        50 dg~l~~~~~~~~~--~~v~~~~~~~g~~~~~~~~~~~~~---~p~~~a~spdg~~l~~~~~~~---------~~v~v~~~  115 (347)
T 3hfq_A           50 KDCLYSVDKEDDE--GGIAAWQIDGQTAHKLNTVVAPGT---PPAYVAVDEARQLVYSANYHK---------GTAEVMKI  115 (347)
T ss_dssp             TCEEEEEEEETTE--EEEEEEEEETTEEEEEEEEEEESC---CCSEEEEETTTTEEEEEETTT---------TEEEEEEE
T ss_pred             CCeEEEEEecCCC--ceEEEEEecCCcEEEeeeeecCCC---CCEEEEECCCCCEEEEEeCCC---------CEEEEEEe
Confidence            6888777764111  489999998887766532 22111   23345544 465 55555333         78999999


Q ss_pred             eccCCCcccceeEEeecCCCCCccccccceeeE-EEEEEcCcEEEEeecCCCceEEEECC-CCcEE
Q 035860          348 KDHYERNEWSKAYKISTDQDGDRIEEEDFFQYV-CSIVVAGRWMVLDTFRHDNKFVLDLE-NDDCH  411 (440)
Q Consensus       348 ~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~l~~~~~~~~~~yd~~-~~~~~  411 (440)
                      +..|   ....+..+........ .......+. .....+|+ +++.....+.+.+||+. +++..
T Consensus       116 ~~~g---~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A          116 AADG---ALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             CTTS---CEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCCC---CeeecceeecCCCCCC-ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE
Confidence            7532   3444555543221110 000000111 12334677 77766655678899988 55543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=87.23  E-value=20  Score=33.82  Aligned_cols=147  Identities=12%  Similarity=0.118  Sum_probs=78.1

Q ss_pred             eeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCc
Q 035860          156 VAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSD  235 (440)
Q Consensus       156 s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~  235 (440)
                      |.+++|.+...     ..++|||..|++...+-.....  ..   .        +.++.|.+. +.|-++.-      ..
T Consensus       114 S~~n~lAvgld-----~tV~lWd~~tg~~~~~~~~~~~--~~---~--------V~sv~fspd-g~~lasgs------~D  168 (420)
T 4gga_A          114 SSGNVLAVALD-----NSVYLWSASSGDILQLLQMEQP--GE---Y--------ISSVAWIKE-GNYLAVGT------SS  168 (420)
T ss_dssp             CTTSEEEEEET-----TEEEEEETTTCCEEEEEECCST--TC---C--------EEEEEECTT-SSEEEEEE------TT
T ss_pred             CCCCEEEEEeC-----CEEEEEECCCCCEEEEEEecCC--CC---c--------EEEEEECCC-CCEEEEEE------CC
Confidence            45677766655     7899999999987654322111  00   1        347777763 44433321      24


Q ss_pred             ceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEeeCCCCCCCCCCCCE
Q 035860          236 YKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKIDLPIDCNMEPRSPS  315 (440)
Q Consensus       236 ~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~  315 (440)
                      -.+.||+.. ++.-  +..+..   ....-..+..+|.+-..+..+    ..+..+|..........+.....   ....
T Consensus       169 g~v~iWd~~-~~~~--~~~~~~---h~~~v~~~s~~~~~l~sgs~d----~~i~~~d~~~~~~~~~~~~~h~~---~~~~  235 (420)
T 4gga_A          169 AEVQLWDVQ-QQKR--LRNMTS---HSARVGSLSWNSYILSSGSRS----GHIHHHDVRVAEHHVATLSGHSQ---EVCG  235 (420)
T ss_dssp             SCEEEEETT-TTEE--EEEECC---CSSCEEEEEEETTEEEEEETT----SEEEEEETTSSSCEEEEEECCSS---CEEE
T ss_pred             CeEEEEEcC-CCcE--EEEEeC---CCCceEEEeeCCCEEEEEeCC----CceeEeeecccceeeEEeccccc---ceee
Confidence            568899988 6632  111111   000111445566554444444    47888888765544333322111   1122


Q ss_pred             EEEe-CCeEEEEEcCCCCCCCCCCccEEEEEEeec
Q 035860          316 LINL-RGNLALVTFPTDDYDGDTEYIWIEIWVLKD  349 (440)
Q Consensus       316 L~~~-~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~  349 (440)
                      +... .|.+.+....+         ..+.||-+..
T Consensus       236 ~~~~~~g~~l~s~~~D---------~~v~i~~~~~  261 (420)
T 4gga_A          236 LRWAPDGRHLASGGND---------NLVNVWPSAP  261 (420)
T ss_dssp             EEECTTSSEEEEEETT---------SCEEEEESSC
T ss_pred             eeecCCCCeeeeeecc---------ccceEEeecc
Confidence            2222 45655555444         6789998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=87.09  E-value=15  Score=34.04  Aligned_cols=176  Identities=10%  Similarity=0.072  Sum_probs=89.8

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~  250 (440)
                      ...+.|||..+++....-.....                ..++.+++.. .+ ++...    ...-.+.+|+.. ++.-.
T Consensus        11 d~~v~v~d~~~~~~~~~~~~~~~----------------~~~~~~s~dg-~~-l~~~~----~~d~~i~v~d~~-~~~~~   67 (391)
T 1l0q_A           11 SDNISVIDVTSNKVTATIPVGSN----------------PMGAVISPDG-TK-VYVAN----AHSNDVSIIDTA-TNNVI   67 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSS----------------EEEEEECTTS-SE-EEEEE----GGGTEEEEEETT-TTEEE
T ss_pred             CCEEEEEECCCCeEEEEeecCCC----------------cceEEECCCC-CE-EEEEC----CCCCeEEEEECC-CCeEE
Confidence            47899999998876542111110                2266676643 33 32222    123478889988 76543


Q ss_pred             eeccCCcccCCCCCcccEEE--cCe-EEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe-CCe-EE
Q 035860          251 IISSSLALRPDVSYEFGVSA--YGD-MHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL-RGN-LA  324 (440)
Q Consensus       251 ~~~~~p~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~-~G~-L~  324 (440)
                      ..-....    .  -.++.+  +|. +|.....+    ..|..+|+.+.+.... ....      ....+... +|+ |+
T Consensus        68 ~~~~~~~----~--v~~~~~spdg~~l~~~~~~~----~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           68 ATVPAGS----S--PQGVAVSPDGKQVYVTNMAS----STLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEECSS----S--EEEEEECTTSSEEEEEETTT----TEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEE
T ss_pred             EEEECCC----C--ccceEECCCCCEEEEEECCC----CEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEE
Confidence            2211111    0  012222  355 44443333    4799999998766433 3221      11233333 455 44


Q ss_pred             EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEE
Q 035860          325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLD  404 (440)
Q Consensus       325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd  404 (440)
                      +....+         ..+.+|-++..      ..+..+.....         ...+ ....+|+.+++.......+.+||
T Consensus       132 ~~~~~~---------~~v~~~d~~~~------~~~~~~~~~~~---------~~~~-~~~~dg~~l~~~~~~~~~v~~~d  186 (391)
T 1l0q_A          132 VTNNGD---------KTVSVINTVTK------AVINTVSVGRS---------PKGI-AVTPDGTKVYVANFDSMSISVID  186 (391)
T ss_dssp             EEETTT---------TEEEEEETTTT------EEEEEEECCSS---------EEEE-EECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEeCCC---------CEEEEEECCCC------cEEEEEecCCC---------cceE-EECCCCCEEEEEeCCCCEEEEEE
Confidence            554333         68999976531      22333332210         0111 22236776766555556788999


Q ss_pred             CCCCcE
Q 035860          405 LENDDC  410 (440)
Q Consensus       405 ~~~~~~  410 (440)
                      +.+++.
T Consensus       187 ~~~~~~  192 (391)
T 1l0q_A          187 TVTNSV  192 (391)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            998874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=84.97  E-value=20  Score=31.61  Aligned_cols=110  Identities=11%  Similarity=0.120  Sum_probs=72.3

Q ss_pred             cE-EEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEE
Q 035860          267 GV-SAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEI  344 (440)
Q Consensus       267 ~v-~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~I  344 (440)
                      |+ +.+|.||--+.....  ..|..+|+++++- ..+++|...    ....+...+++|+++...+         .  .+
T Consensus        25 GL~~~~~~LyestG~~g~--S~v~~vD~~tgkv~~~~~l~~~~----fgeGi~~~~~~ly~ltw~~---------~--~v   87 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETGR--SSVRKVDLETGRILQRAEVPPPY----FGAGIVAWRDRLIQLTWRN---------H--EG   87 (243)
T ss_dssp             EEEEETTEEEEEECCTTS--CEEEEEETTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSS---------S--EE
T ss_pred             cEEEECCEEEEECCCCCC--ceEEEEECCCCCEEEEEeCCCCc----ceeEEEEeCCEEEEEEeeC---------C--EE
Confidence            55 455666665554322  4899999998877 467888744    2234667788999997543         3  45


Q ss_pred             EEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860          345 WVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC  410 (440)
Q Consensus       345 W~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~  410 (440)
                      |+.+-    ..-.++.+|+...       ..+  -+|   .+|+.+++.+. ++++.++|+++.+.
T Consensus        88 ~v~D~----~tl~~~~ti~~~~-------~Gw--glt---~dg~~L~vSdg-s~~l~~iDp~t~~~  136 (243)
T 3mbr_X           88 FVYDL----ATLTPRARFRYPG-------EGW--ALT---SDDSHLYMSDG-TAVIRKLDPDTLQQ  136 (243)
T ss_dssp             EEEET----TTTEEEEEEECSS-------CCC--EEE---ECSSCEEEECS-SSEEEEECTTTCCE
T ss_pred             EEEEC----CcCcEEEEEeCCC-------Cce--EEe---eCCCEEEEECC-CCeEEEEeCCCCeE
Confidence            66653    3467788888752       111  222   36777777664 67899999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=83.03  E-value=46  Score=34.39  Aligned_cols=127  Identities=9%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             eEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEE--c--CeEEEEEecCCCCc
Q 035860          210 HFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSA--Y--GDMHWISFDQNNIH  285 (440)
Q Consensus       210 ~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~--~--G~lywl~~~~~~~~  285 (440)
                      +.++.+.+..+.-.++...     ..-.+.+|+.. ++.|..+........ .  -..+.+  +  |.+...+..+    
T Consensus        56 V~~l~~s~~~~~~~l~s~s-----~Dg~I~vwd~~-~~~~~~~~~~~~h~~-~--V~~v~~sp~~~~~~l~sgs~d----  122 (753)
T 3jro_A           56 VWRVDWAHPKFGTILASCS-----YDGKVLIWKEE-NGRWSQIAVHAVHSA-S--VNSVQWAPHEYGPLLLVASSD----  122 (753)
T ss_dssp             EEEEEECCTTSCSEEEEEE-----TTSCEEEEEEE-TTEEEEEEEECCCSS-C--EEEEEECCGGGCSEEEEEETT----
T ss_pred             eEEEEecCCCCCCEEEEEe-----CCCeEEEEECC-CCcccccccccCCCC-C--eEEEEECCCCCCCEEEEEeCC----
Confidence            3477776654232333332     24568999999 888766553322000 0  002222  2  4444444444    


Q ss_pred             eEEEEEEcCCccEE-EeeCCCCCCCCCCCCEEEEe--------------CCeEEEEEcCCCCCCCCCCccEEEEEEeecc
Q 035860          286 TCIFSFDFNKEEFK-KIDLPIDCNMEPRSPSLINL--------------RGNLALVTFPTDDYDGDTEYIWIEIWVLKDH  350 (440)
Q Consensus       286 ~~Il~fD~~~e~~~-~i~lP~~~~~~~~~~~L~~~--------------~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~  350 (440)
                      ..|..+|+.+..-. .+.+.....   ....+...              +|.+.++...+         ..+.||-+...
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~---~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~  190 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSD  190 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSS---CEEEEEECCCC---------CGGGCCEEEEETT---------SCEEEEEEETT
T ss_pred             CcEEEEEeecCCCcceeEeecCCC---ceEEEEecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCC
Confidence            47888998776221 111111000   11112221              35555555544         67999999863


Q ss_pred             CCCcccceeEEee
Q 035860          351 YERNEWSKAYKIS  363 (440)
Q Consensus       351 g~~~~W~~~~~i~  363 (440)
                        ...+.....+.
T Consensus       191 --~~~~~~~~~~~  201 (753)
T 3jro_A          191 --AQTYVLESTLE  201 (753)
T ss_dssp             --TTEEEEEEEEC
T ss_pred             --cccceeeeeec
Confidence              34555555554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=83.03  E-value=25  Score=31.31  Aligned_cols=108  Identities=10%  Similarity=0.038  Sum_probs=70.7

Q ss_pred             EEcCeEEEEEecCCCCceEEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEeCCeEEEEEcCCCCCCCCCCccEEEEEEe
Q 035860          269 SAYGDMHWISFDQNNIHTCIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINLRGNLALVTFPTDDYDGDTEYIWIEIWVL  347 (440)
Q Consensus       269 ~~~G~lywl~~~~~~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~~l~IW~l  347 (440)
                      +.+|.||--+.....  ..|..+|+++++- ..+++|+..    ....+...+++|+++...+         .  .+|+.
T Consensus        50 ~~~~~LyestG~~g~--S~v~~vD~~Tgkv~~~~~l~~~~----FgeGit~~g~~ly~ltw~~---------~--~v~v~  112 (262)
T 3nol_A           50 YRNGYFYESTGLNGR--SSIRKVDIESGKTLQQIELGKRY----FGEGISDWKDKIVGLTWKN---------G--LGFVW  112 (262)
T ss_dssp             EETTEEEEEEEETTE--EEEEEECTTTCCEEEEEECCTTC----CEEEEEEETTEEEEEESSS---------S--EEEEE
T ss_pred             EECCEEEEECCCCCC--ceEEEEECCCCcEEEEEecCCcc----ceeEEEEeCCEEEEEEeeC---------C--EEEEE
Confidence            457777776655321  4899999998876 566887643    2234667788999987543         3  45666


Q ss_pred             eccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEeecCCCceEEEECCCCcE
Q 035860          348 KDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLDLENDDC  410 (440)
Q Consensus       348 ~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd~~~~~~  410 (440)
                      +-    .+-.++.+|+... .+      +  .+|   .+|+.+++.+. .+.+.++|+++.+.
T Consensus       113 D~----~t~~~~~ti~~~~-eG------~--glt---~dg~~L~~SdG-s~~i~~iDp~T~~v  158 (262)
T 3nol_A          113 NI----RNLRQVRSFNYDG-EG------W--GLT---HNDQYLIMSDG-TPVLRFLDPESLTP  158 (262)
T ss_dssp             ET----TTCCEEEEEECSS-CC------C--CEE---ECSSCEEECCS-SSEEEEECTTTCSE
T ss_pred             EC----ccCcEEEEEECCC-Cc------e--EEe---cCCCEEEEECC-CCeEEEEcCCCCeE
Confidence            53    3466778888743 11      1  122   36776777654 57899999999874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=82.91  E-value=26  Score=31.38  Aligned_cols=195  Identities=14%  Similarity=0.081  Sum_probs=96.6

Q ss_pred             eccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcc
Q 035860          157 AYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDY  236 (440)
Q Consensus       157 ~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~  236 (440)
                      ..+.+.+....   ...+.|||+.|++....-.....               .. ++.+++..+ + ++....    ..-
T Consensus         8 ~~~~~~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~---------------~~-~~~~s~dg~-~-l~~~~~----~~~   62 (331)
T 3u4y_A            8 TSNFGIVVEQH---LRRISFFSTDTLEILNQITLGYD---------------FV-DTAITSDCS-N-VVVTSD----FCQ   62 (331)
T ss_dssp             CCCEEEEEEGG---GTEEEEEETTTCCEEEEEECCCC---------------EE-EEEECSSSC-E-EEEEES----TTC
T ss_pred             CCCEEEEEecC---CCeEEEEeCcccceeeeEEccCC---------------cc-eEEEcCCCC-E-EEEEeC----CCC
Confidence            34455444431   47899999999987543221111               13 566666433 3 333321    133


Q ss_pred             eEEEEEeCCCCCc--ceeccCCcccCCCCCcccEE--EcCeEEEEEecCCCCceEEEEEEcCCccEEE-eeCCCCCCCCC
Q 035860          237 KIAVYTLGKDDSW--RIISSSLALRPDVSYEFGVS--AYGDMHWISFDQNNIHTCIFSFDFNKEEFKK-IDLPIDCNMEP  311 (440)
Q Consensus       237 ~~~Vyss~~t~~W--~~~~~~p~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~  311 (440)
                      .+.+|+.. ++.-  +.+....    .+.  .++.  -+|...+..... +....|..+|+.+.+... ++...      
T Consensus        63 ~i~~~d~~-~~~~~~~~~~~~~----~~~--~~~~~s~dg~~l~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~------  128 (331)
T 3u4y_A           63 TLVQIETQ-LEPPKVVAIQEGQ----SSM--ADVDITPDDQFAVTVTGL-NHPFNMQSYSFLKNKFISTIPIPY------  128 (331)
T ss_dssp             EEEEEECS-SSSCEEEEEEECS----SCC--CCEEECTTSSEEEECCCS-SSSCEEEEEETTTTEEEEEEECCT------
T ss_pred             eEEEEECC-CCceeEEecccCC----CCc--cceEECCCCCEEEEecCC-CCcccEEEEECCCCCeEEEEECCC------
Confidence            78888888 7764  1111110    110  0122  245533333222 111279999998876543 33322      


Q ss_pred             CCCEEEEe-CCe-EEEEEcCCCCCCCCCCccEEEEEEeeccCCCcccce-eEEeecCCCCCccccccceeeEEEEEEcCc
Q 035860          312 RSPSLINL-RGN-LALVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSK-AYKISTDQDGDRIEEEDFFQYVCSIVVAGR  388 (440)
Q Consensus       312 ~~~~L~~~-~G~-L~lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  388 (440)
                      ....+... +|+ |++.....        ...+.+|.++..+.  .... ...++..         ..... .....+|+
T Consensus       129 ~~~~~~~spdg~~l~~~~~~~--------~~~i~~~~~~~~g~--~~~~~~~~~~~~---------~~~~~-~~~spdg~  188 (331)
T 3u4y_A          129 DAVGIAISPNGNGLILIDRSS--------ANTVRRFKIDADGV--LFDTGQEFISGG---------TRPFN-ITFTPDGN  188 (331)
T ss_dssp             TEEEEEECTTSSCEEEEEETT--------TTEEEEEEECTTCC--EEEEEEEEECSS---------SSEEE-EEECTTSS
T ss_pred             CccceEECCCCCEEEEEecCC--------CceEEEEEECCCCc--EeecCCccccCC---------CCccc-eEECCCCC
Confidence            11233333 464 66665433        23399999986431  1111 1112111         00111 12334777


Q ss_pred             EEEEeecCCCceEEEECCCCcE
Q 035860          389 WMVLDTFRHDNKFVLDLENDDC  410 (440)
Q Consensus       389 ~i~l~~~~~~~~~~yd~~~~~~  410 (440)
                      .+++.....+.+.+||+++++.
T Consensus       189 ~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          189 FAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEEEEETTTTEEEEEECSSTTS
T ss_pred             EEEEEeCCCCeEEEEECCCCcc
Confidence            7777665556789999998774

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=81.67  E-value=32  Score=31.62  Aligned_cols=180  Identities=12%  Similarity=0.069  Sum_probs=92.7

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcc
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~  250 (440)
                      ...+.|||+.+++....-.....                ..++.+++. +.+-++..     ...-.+.+|+.. ++...
T Consensus        95 ~~~v~v~d~~~~~~~~~~~~~~~----------------~~~~~~s~d-g~~l~~~~-----~~~~~v~~~d~~-~~~~~  151 (391)
T 1l0q_A           95 SSTLSVIDTTSNTVAGTVKTGKS----------------PLGLALSPD-GKKLYVTN-----NGDKTVSVINTV-TKAVI  151 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSS----------------EEEEEECTT-SSEEEEEE-----TTTTEEEEEETT-TTEEE
T ss_pred             CCEEEEEECCCCeEEEEEeCCCC----------------cceEEECCC-CCEEEEEe-----CCCCEEEEEECC-CCcEE
Confidence            36899999999876543221110                236677664 33332222     124478889988 77543


Q ss_pred             eeccCCcccCCCCCcccEEE--cCeEEEEEecCCCCceEEEEEEcCCccEEEe-eCCCCCCCCCCCCEEEEe-CCeEEEE
Q 035860          251 IISSSLALRPDVSYEFGVSA--YGDMHWISFDQNNIHTCIFSFDFNKEEFKKI-DLPIDCNMEPRSPSLINL-RGNLALV  326 (440)
Q Consensus       251 ~~~~~p~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~lv  326 (440)
                      ..-....   ..   ..+.+  +|...+++....   ..|..+|+.+.+.... ....      ....+... +|+..++
T Consensus       152 ~~~~~~~---~~---~~~~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~  216 (391)
T 1l0q_A          152 NTVSVGR---SP---KGIAVTPDGTKVYVANFDS---MSISVIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYV  216 (391)
T ss_dssp             EEEECCS---SE---EEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEECSS------EEEEEEECTTSSEEEE
T ss_pred             EEEecCC---Cc---ceEEECCCCCEEEEEeCCC---CEEEEEECCCCeEEEEEecCC------CccceEECCCCCEEEE
Confidence            3221111   00   12222  354444433221   4799999988765433 3221      11123333 4554444


Q ss_pred             EcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEE-EEEEcCcEEEEeecCCCceEEEEC
Q 035860          327 TFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVC-SIVVAGRWMVLDTFRHDNKFVLDL  405 (440)
Q Consensus       327 ~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~l~~~~~~~~~~yd~  405 (440)
                      ....      .....+.+|-++.      ...+..++....           +.+ ....+|+.|++.....+.+.+||+
T Consensus       217 ~~~~------~~~~~v~~~d~~~------~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          217 TNVD------KYFNTVSMIDTGT------NKITARIPVGPD-----------PAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             EEEC------SSCCEEEEEETTT------TEEEEEEECCSS-----------EEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EecC------cCCCcEEEEECCC------CeEEEEEecCCC-----------ccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            4321      0136888887753      233445553211           111 223467777776555578899999


Q ss_pred             CCCcEE
Q 035860          406 ENDDCH  411 (440)
Q Consensus       406 ~~~~~~  411 (440)
                      .+++..
T Consensus       274 ~~~~~~  279 (391)
T 1l0q_A          274 ATNTIT  279 (391)
T ss_dssp             TTTEEE
T ss_pred             CCCcEE
Confidence            998843

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=80.15  E-value=34  Score=30.98  Aligned_cols=126  Identities=9%  Similarity=0.091  Sum_probs=63.5

Q ss_pred             EEEeeeCCCCCEEEEEEeccccCCcceEEEEEeCCCCCcceeccCCcccCCCCCcccEEEc----CeEEEEEecCCCCce
Q 035860          211 FGMGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAY----GDMHWISFDQNNIHT  286 (440)
Q Consensus       211 ~~~g~d~~~~~ykVv~~~~~~~~~~~~~~Vyss~~t~~W~~~~~~p~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~  286 (440)
                      ..+.+.+..+.-.++...     ..-.+.+|+.. ++.|..+........ ..  ..+.+.    |.+...+..+    .
T Consensus        59 ~~~~~~~~~~~~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~l~~~~~d----~  125 (379)
T 3jrp_A           59 WRVDWAHPKFGTILASCS-----YDGKVLIWKEE-NGRWSQIAVHAVHSA-SV--NSVQWAPHEYGPLLLVASSD----G  125 (379)
T ss_dssp             EEEEECCGGGCSEEEEEE-----TTSCEEEEEEE-TTEEEEEEEECCCSS-CE--EEEEECCGGGCSEEEEEETT----S
T ss_pred             EEEEeCCCCCCCEEEEec-----cCCEEEEEEcC-CCceeEeeeecCCCc-ce--EEEEeCCCCCCCEEEEecCC----C
Confidence            366665543222333332     23568999999 888766553322000 00  022222    4444444444    4


Q ss_pred             EEEEEEcCCccE-EEeeCCCCCCCCCCCCEEEEe--------------CCeEEEEEcCCCCCCCCCCccEEEEEEeeccC
Q 035860          287 CIFSFDFNKEEF-KKIDLPIDCNMEPRSPSLINL--------------RGNLALVTFPTDDYDGDTEYIWIEIWVLKDHY  351 (440)
Q Consensus       287 ~Il~fD~~~e~~-~~i~lP~~~~~~~~~~~L~~~--------------~G~L~lv~~~~~~~~~~~~~~~l~IW~l~~~g  351 (440)
                      .|..+|+.+..- ..+.+.....   ....+...              +|.+.++...+         ..+.||-+... 
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~-  192 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAI---GVNSASWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSD-  192 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTT---CEEEEEECCCC----------CTTCEEEEEETT---------SCEEEEEEETT-
T ss_pred             cEEEEecCCCCceeeEEecCCCC---ceEEEEEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCC-
Confidence            788899887632 2222211110   11122222              36666666544         68999999753 


Q ss_pred             CCcccceeEEee
Q 035860          352 ERNEWSKAYKIS  363 (440)
Q Consensus       352 ~~~~W~~~~~i~  363 (440)
                       ...|.....+.
T Consensus       193 -~~~~~~~~~~~  203 (379)
T 3jrp_A          193 -AQTYVLESTLE  203 (379)
T ss_dssp             -TTEEEEEEEEC
T ss_pred             -CcceeeEEEEe
Confidence             34566665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-05

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 43 EFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF 80
            P  ++  I     +  LL+   V K W  +    S 
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.55
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.52
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.45
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.37
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.57
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.44

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.7e-12  Score=79.47  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhH
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSF   80 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F   80 (440)
                      ..||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.5e-06  Score=74.82  Aligned_cols=198  Identities=11%  Similarity=0.001  Sum_probs=118.9

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-ccccCCcceEEEEEeCCCCCc
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-PVIELSDYKIAVYTLGKDDSW  249 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-~~~~~~~~~~~Vyss~~t~~W  249 (440)
                      ...+.++||.|.+|..+|+++.....             .....++.     |++.+. ..+......+++|+.. ++.|
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~-------------~~~~~~~~-----~i~~~gg~~~~~~~~~~~~~~~~-~~~~  129 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNR-------------IGVGVIDG-----HIYAVGGSHGCIHHNSVERYEPE-RDEW  129 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBT-------------CEEEEETT-----EEEEECCEETTEECCCEEEEETT-TTEE
T ss_pred             cchhhhcccccccccccccccceecc-------------eeccccce-----eeEEecceecccccceeeeeccc-cCcc
Confidence            35789999999999999987654221             11222221     455553 2233445568899999 9999


Q ss_pred             ceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEEEEEc
Q 035860          250 RIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLALVTF  328 (440)
Q Consensus       250 ~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~lv~~  328 (440)
                      ......+......   ..+..++.+|-+....... ...+..||+.+++|...+.+....   ........+++|.++..
T Consensus       130 ~~~~~~~~~r~~~---~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~GG  203 (288)
T d1zgka1         130 HLVAPMLTRRIGV---GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR---SGAGVCVLHNCIYAAGG  203 (288)
T ss_dssp             EECCCCSSCCBSC---EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEEEECC
T ss_pred             ccccccccccccc---eeeeeeecceEecCcccccccceEEEeecccccccccccccccc---ccccccceeeeEEEecC
Confidence            8877665532221   2567788888765443222 257899999999999875544322   45577888999998876


Q ss_pred             CCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe----ecCCCceEEEE
Q 035860          329 PTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD----TFRHDNKFVLD  404 (440)
Q Consensus       329 ~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~----~~~~~~~~~yd  404 (440)
                      ..      .....-.+|..+-.  ...|+.+..++..         +....++.  .+|.+.++.    ....+.+.+||
T Consensus       204 ~~------~~~~~~~~~~~~~~--~~~~~~~~~~p~~---------r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd  264 (288)
T d1zgka1         204 YD------GQDQLNSVERYDVE--TETWTFVAPMKHR---------RSALGITV--HQGRIYVLGGYDGHTFLDSVECYD  264 (288)
T ss_dssp             BC------SSSBCCCEEEEETT--TTEEEECCCCSSC---------CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEE
T ss_pred             cc------ccccccceeeeeec--ceeeecccCccCc---------ccceEEEE--ECCEEEEEecCCCCeecceEEEEE
Confidence            54      12233455555542  3467665332211         11112222  355544442    12224578999


Q ss_pred             CCCCcEEE
Q 035860          405 LENDDCHL  412 (440)
Q Consensus       405 ~~~~~~~~  412 (440)
                      +++++|..
T Consensus       265 ~~~~~W~~  272 (288)
T d1zgka1         265 PDTDTWSE  272 (288)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCEEEE
Confidence            99999875

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.3e-08  Score=77.30  Aligned_cols=46  Identities=13%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHhh
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMA   87 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~~   87 (440)
                      ..||+||+.+||+.||+++|+|+.+|||+|+.++.++.+-+.+..+
T Consensus        20 ~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r   65 (102)
T d2ovrb1          20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (102)
T ss_dssp             TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             hhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            6799999999999999999999999999999999999988776543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-05  Score=72.13  Aligned_cols=198  Identities=13%  Similarity=0.040  Sum_probs=117.8

Q ss_pred             ceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe-----ccccCCcceEEEEEeCC
Q 035860          171 KDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY-----PVIELSDYKIAVYTLGK  245 (440)
Q Consensus       171 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~-----~~~~~~~~~~~Vyss~~  245 (440)
                      -..+.++||.|++|..+|+++..+..             + +.....   . ++++++     ..+......+++|+.. 
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~-------------~-~~~~~~---~-~iyv~GG~~~~~~~~~~~~~~~~yd~~-   78 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSG-------------L-AGCVVG---G-LLYAVGGRNNSPDGNTDSSALDCYNPM-   78 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS-------------C-EEEEET---T-EEEEECCEEEETTEEEECCCEEEEETT-
T ss_pred             CceEEEEECCCCeEEECCCCCCccce-------------e-EEEEEC---C-EEEEEeCcccCCCCccccchhhhcccc-
Confidence            35688999999999999877654211             2 222221   2 566663     1112335578999999 


Q ss_pred             CCCcceeccCCcccCCCCCcccEEEcCeEEEEEecCCCC-ceEEEEEEcCCccEEEeeCCCCCCCCCCCCEEEEeCCeEE
Q 035860          246 DDSWRIISSSLALRPDVSYEFGVSAYGDMHWISFDQNNI-HTCIFSFDFNKEEFKKIDLPIDCNMEPRSPSLINLRGNLA  324 (440)
Q Consensus       246 t~~W~~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~Il~fD~~~e~~~~i~lP~~~~~~~~~~~L~~~~G~L~  324 (440)
                      ++.|+.++.+|......   ..+.++|.+|.+....... ......+|..++.|...+.+....   .....+...+.+.
T Consensus        79 ~~~w~~~~~~p~~r~~~---~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~  152 (288)
T d1zgka1          79 TNQWSPCAPMSVPRNRI---GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR---IGVGVAVLNRLLY  152 (288)
T ss_dssp             TTEEEECCCCSSCCBTC---EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEE
T ss_pred             cccccccccccceecce---eccccceeeEEecceecccccceeeeeccccCcccccccccccc---ccceeeeeeecce
Confidence            99999998877533322   2678899999875433221 245778999999998774433221   4556778889999


Q ss_pred             EEEcCCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCccccccceeeEEEEEEcCcEEEEe----ecCCCce
Q 035860          325 LVTFPTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDRIEEEDFFQYVCSIVVAGRWMVLD----TFRHDNK  400 (440)
Q Consensus       325 lv~~~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~i~l~----~~~~~~~  400 (440)
                      ++.....      ....-.+|.++..  ...|......+....           ..+....++.+.++.    ....+..
T Consensus       153 ~~GG~~~------~~~~~~~~~~d~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~i~GG~~~~~~~~~~  213 (288)
T d1zgka1         153 AVGGFDG------TNRLNSAECYYPE--RNEWRMITAMNTIRS-----------GAGVCVLHNCIYAAGGYDGQDQLNSV  213 (288)
T ss_dssp             EECCBCS------SCBCCCEEEEETT--TTEEEECCCCSSCCB-----------SCEEEEETTEEEEECCBCSSSBCCCE
T ss_pred             EecCccc------ccccceEEEeecc--ccccccccccccccc-----------cccccceeeeEEEecCccccccccce
Confidence            8876541      1223345555542  345665432222110           011111244433331    1122456


Q ss_pred             EEEECCCCcEEE
Q 035860          401 FVLDLENDDCHL  412 (440)
Q Consensus       401 ~~yd~~~~~~~~  412 (440)
                      ..||..+++|..
T Consensus       214 ~~~~~~~~~~~~  225 (288)
T d1zgka1         214 ERYDVETETWTF  225 (288)
T ss_dssp             EEEETTTTEEEE
T ss_pred             eeeeecceeeec
Confidence            899999999865

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=3.1e-08  Score=74.85  Aligned_cols=41  Identities=24%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             CCCcHHHHHHHHhcCCcccceeeeccccchhhhhC-ChhHHH
Q 035860           42 MEFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIID-SHSFAH   82 (440)
Q Consensus        42 ~~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~-s~~F~~   82 (440)
                      ..||+||+++||+.|++++|+|++.|||+|+.+++ ++..-+
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr   48 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWK   48 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            57999999999999999999999999999999985 566443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-07  Score=73.90  Aligned_cols=45  Identities=20%  Similarity=0.140  Sum_probs=39.7

Q ss_pred             CCcHHHHHHHHhcCCcccceeeeccccchhhhhCChhHHHHHHhh
Q 035860           43 EFPSNIIYNILLRQPVKVLLRFRCVSKTWSNIIDSHSFAHAHVMA   87 (440)
Q Consensus        43 ~LP~Dll~eIL~RLP~~sL~R~r~VCK~W~~li~s~~F~~~~~~~   87 (440)
                      .|++||+..||+.|++++|+++.+|||+|+.+++++.+-+....+
T Consensus        17 ~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          17 RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             GTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            345799999999999999999999999999999999887766544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.57  E-value=0.00038  Score=64.50  Aligned_cols=153  Identities=11%  Similarity=0.093  Sum_probs=84.7

Q ss_pred             EeeeccEEEeeecCCCcceeEEEEcccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe--ccc
Q 035860          154 YFVAYGFICFGESSCHVKDHVHLWNPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY--PVI  231 (440)
Q Consensus       154 ~~s~~GLlcl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~--~~~  231 (440)
                      +...+|.+.+...  .......++||.|++|..+|.++.....+              +..... .+  +|+.+.  ...
T Consensus        82 ~~~~~g~i~v~Gg--~~~~~~~~yd~~~~~w~~~~~~~~~r~~~--------------~~~~~~-dG--~v~v~GG~~~~  142 (387)
T d1k3ia3          82 SMDGNGQIVVTGG--NDAKKTSLYDSSSDSWIPGPDMQVARGYQ--------------SSATMS-DG--RVFTIGGSWSG  142 (387)
T ss_dssp             EECTTSCEEEECS--SSTTCEEEEEGGGTEEEECCCCSSCCSSC--------------EEEECT-TS--CEEEECCCCCS
T ss_pred             EEecCCcEEEeec--CCCcceeEecCccCccccccccccccccc--------------ceeeec-CC--ceeeecccccc
Confidence            3445777766553  12457889999999999999877653211              222211 12  455554  122


Q ss_pred             cCCcceEEEEEeCCCCCcceeccCCccc---CCC-----C-CcccEE--EcCeEEEEEecCCCCceEEEEEEcCCccEEE
Q 035860          232 ELSDYKIAVYTLGKDDSWRIISSSLALR---PDV-----S-YEFGVS--AYGDMHWISFDQNNIHTCIFSFDFNKEEFKK  300 (440)
Q Consensus       232 ~~~~~~~~Vyss~~t~~W~~~~~~p~~~---~~~-----~-~~~~v~--~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~  300 (440)
                      ......+++|+.. ++.|..+.......   ...     . ...-++  .+|.+|......    ..+..+|..+..|..
T Consensus       143 ~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~----~~~~~~~~~~~~~~~  217 (387)
T d1k3ia3         143 GVFEKNGEVYSPS-SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPST----AMNWYYTSGSGDVKS  217 (387)
T ss_dssp             SSCCCCEEEEETT-TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSS----EEEEEECSTTCEEEE
T ss_pred             ccccceeeeecCC-CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcC----CcEEecCcccCcEee
Confidence            3344568999999 99999887543210   000     0 000111  156666544333    578889999999976


Q ss_pred             e-eCCCCCCCCC-----CCCEEEEeCCeEEEEEcCC
Q 035860          301 I-DLPIDCNMEP-----RSPSLINLRGNLALVTFPT  330 (440)
Q Consensus       301 i-~lP~~~~~~~-----~~~~L~~~~G~L~lv~~~~  330 (440)
                      . ..|.......     ....+...+|++.++....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~  253 (387)
T d1k3ia3         218 AGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  253 (387)
T ss_dssp             EEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             ccccccCcccCcccccccEEEeeccCCceEEEEecc
Confidence            5 2222111000     1122333468888877543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.44  E-value=0.0004  Score=64.32  Aligned_cols=200  Identities=6%  Similarity=-0.043  Sum_probs=106.0

Q ss_pred             cccccccccCCCCCCCCCCCCCcccccccccceEEEeeeCCCCCEEEEEEe--c-----cccCCcceEEEEEeCCCCCcc
Q 035860          178 NPLRREVLRLPKLGYYCDYQHDYYDAYRGLRGHFGMGYDSATGTYKIVQSY--P-----VIELSDYKIAVYTLGKDDSWR  250 (440)
Q Consensus       178 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~--~-----~~~~~~~~~~Vyss~~t~~W~  250 (440)
                      .|.+++|...++.+...               . +....+..+  ||+.+.  .     ........+++|+.. +++|.
T Consensus         5 ~p~~g~W~~~~~~p~~~---------------~-~~a~~~~~g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~   65 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVP---------------A-AAAIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVS   65 (387)
T ss_dssp             CTTSCEEEEEEECSSCC---------------S-EEEEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBC
T ss_pred             CCCCCccCCcCCCCccc---------------c-EEEEEeeCC--EEEEEEeecCcccCCCCCceeEEEEEECC-CCcEe
Confidence            48899998776554431               1 222223223  677774  1     112233458899999 99998


Q ss_pred             eeccCCcccCCCCCcccEEEcCeEEEEEecCCCCceEEEEEEcCCccEEEee-CCCCCCCCCCCCEEEEe-CCeEEEEEc
Q 035860          251 IISSSLALRPDVSYEFGVSAYGDMHWISFDQNNIHTCIFSFDFNKEEFKKID-LPIDCNMEPRSPSLINL-RGNLALVTF  328 (440)
Q Consensus       251 ~~~~~p~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~Il~fD~~~e~~~~i~-lP~~~~~~~~~~~L~~~-~G~L~lv~~  328 (440)
                      ....++......+....+..+|.+|.....+.   ..+-.||+.+++|..++ +|...    .....+.+ +|+++++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~---~~~~~yd~~~~~w~~~~~~~~~r----~~~~~~~~~dG~v~v~GG  138 (387)
T d1k3ia3          66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVAR----GYQSSATMSDGRVFTIGG  138 (387)
T ss_dssp             CCEEEECSCCCSSCEEEECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSSCC----SSCEEEECTTSCEEEECC
T ss_pred             ecCCCCCCcccceeEEEEecCCcEEEeecCCC---cceeEecCccCcccccccccccc----cccceeeecCCceeeecc
Confidence            77644332222233224456899988765443   35788999999998773 33321    33445555 689988886


Q ss_pred             CCCCCCCCCCccEEEEEEeeccCCCcccceeEEeecCCCCCc----cccccceeeEEEEEEcCcEEEEeecCCCceEEEE
Q 035860          329 PTDDYDGDTEYIWIEIWVLKDHYERNEWSKAYKISTDQDGDR----IEEEDFFQYVCSIVVAGRWMVLDTFRHDNKFVLD  404 (440)
Q Consensus       329 ~~~~~~~~~~~~~l~IW~l~~~g~~~~W~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~yd  404 (440)
                      ...     .....-+++..+-  ...+|+.+..+........    .........+... .+|. ++...........||
T Consensus       139 ~~~-----~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~-~~~~g~~~~~~~~~~  209 (387)
T d1k3ia3         139 SWS-----GGVFEKNGEVYSP--SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGS-VFQAGPSTAMNWYYT  209 (387)
T ss_dssp             CCC-----SSSCCCCEEEEET--TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGC-EEECCSSSEEEEEEC
T ss_pred             ccc-----cccccceeeeecC--CCCceeecCCCcccccccccccceeeccceeEEEEe-CCCC-EEEecCcCCcEEecC
Confidence            431     1111223444443  2457987644432211110    0001111122221 2444 444322334567889


Q ss_pred             CCCCcEEE
Q 035860          405 LENDDCHL  412 (440)
Q Consensus       405 ~~~~~~~~  412 (440)
                      ..+..|..
T Consensus       210 ~~~~~~~~  217 (387)
T d1k3ia3         210 SGSGDVKS  217 (387)
T ss_dssp             STTCEEEE
T ss_pred             cccCcEee
Confidence            99888754