Citrus Sinensis ID: 035870
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 842 | 2.2.26 [Sep-21-2011] | |||||||
| P31049 | 394 | Probable fatty acid methy | no | no | 0.300 | 0.642 | 0.375 | 2e-40 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.404 | 0.892 | 0.308 | 2e-39 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.404 | 0.892 | 0.308 | 2e-39 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | no | no | 0.302 | 0.888 | 0.320 | 3e-31 | |
| A5U866 | 287 | Cyclopropane mycolic acid | no | no | 0.302 | 0.888 | 0.320 | 3e-31 | |
| Q49807 | 308 | Cyclopropane mycolic acid | no | no | 0.302 | 0.827 | 0.327 | 2e-29 | |
| Q79FX6 | 287 | Cyclopropane mycolic acid | no | no | 0.312 | 0.916 | 0.297 | 2e-29 | |
| A5U029 | 287 | Cyclopropane mycolic acid | no | no | 0.312 | 0.916 | 0.297 | 2e-29 | |
| Q7U1J9 | 287 | Cyclopropane mycolic acid | no | no | 0.312 | 0.916 | 0.297 | 4e-29 | |
| Q7D9R5 | 287 | Cyclopropane mycolic acid | no | no | 0.309 | 0.909 | 0.304 | 8e-28 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 142/264 (53%), Gaps = 11/264 (4%)
Query: 577 ISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636
IS HYD+SN + L+LD+ M YSCA F+ D L AQ K L K R++ G +L++
Sbjct: 107 ISYHYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDV 166
Query: 637 GCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696
GCGWG LA + K GITLS+EQLK +VK GL D + L + DYR L + +
Sbjct: 167 GCGWGGLARFAAREYDAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGR 226
Query: 697 YDRIISCEMIEAVGHE----FMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-RLSSD 751
+D+++S M E VGH + ++ FG E GL++ I+ R + +
Sbjct: 227 FDKVVSVGMFEHVGHANLALYCQKLFGAVR----EGGLVMNHGITAKHVDGRPVGRGAGE 282
Query: 752 FIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILA 811
FI Y+FP G LP LS I++++ A L V VE++ +HY +TL W +N + K A
Sbjct: 283 FIDRYVFPHGELPHLSMISASICEAG-LEVVDVESLRLHYAKTLHHWSENLENQLHKAAA 341
Query: 812 LGFNDKFIRTWEYYFDYCAAGFKS 835
L +K +R W Y CA F+
Sbjct: 342 L-VPEKTLRIWRLYLAGCAYAFEK 364
|
Pseudomonas putida (taxid: 303) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 190/382 (49%), Gaps = 41/382 (10%)
Query: 465 IFTFEGTRKNCHLKTVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMI 524
+ + G N +R+ +P F+ +V+ + LGL ++Y++G + D+ L++F
Sbjct: 23 LLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWE-CDR----LDMFFS 77
Query: 525 LIANRDLDSSVSKLKQKRGWWSPMLF--TAGIASAKYFFRHISRQNTLTQARRNI--SRH 580
+ L++ + P F T IA A+ F N ++ R I H
Sbjct: 78 KVLRAGLENQL-----------PHHFKDTLRIAGARLF-------NLQSKKRAWIVGKEH 119
Query: 581 YDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGW 640
YDL N+LFS LD M YSCA +K D +L++AQ K+ ++ EK ++ G VL+IGCGW
Sbjct: 120 YDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIGCGW 178
Query: 641 GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRI 700
G LA + G+T+S EQ K A+ + + GL + + L DYR L +++DRI
Sbjct: 179 GGLAHYMASNYDVSVVGVTISAEQQKMAQERCE--GLD--VTILLQDYRDL--NDQFDRI 232
Query: 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG 760
+S M E VG + + +F + L +G+ +L I N +I +YIFP
Sbjct: 233 VSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN----VDPWINKYIFPN 288
Query: 761 GCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIR 820
GCLPS+ +I A S +E N G Y TL W + F+ +I A ++++F R
Sbjct: 289 GCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKR 345
Query: 821 TWEYYFDYCAAGFKSYTLGNYQ 842
+ YY + CA F++ + +Q
Sbjct: 346 MFTYYLNACAGAFRARDIQLWQ 367
|
Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 190/382 (49%), Gaps = 41/382 (10%)
Query: 465 IFTFEGTRKNCHLKTVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMI 524
+ + G N +R+ +P F+ +V+ + LGL ++Y++G + D+ L++F
Sbjct: 23 LLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWE-CDR----LDMFFS 77
Query: 525 LIANRDLDSSVSKLKQKRGWWSPMLF--TAGIASAKYFFRHISRQNTLTQARRNI--SRH 580
+ L++ + P F T IA A+ F N ++ R I H
Sbjct: 78 KVLRAGLENQL-----------PHHFKDTLRIAGARLF-------NLQSKKRAWIVGKEH 119
Query: 581 YDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGW 640
YDL N+LFS LD M YSCA +K D +L++AQ K+ ++ EK ++ G VL+IGCGW
Sbjct: 120 YDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIGCGW 178
Query: 641 GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRI 700
G LA + G+T+S EQ K A+ + + GL + + L DYR L +++DRI
Sbjct: 179 GGLAHYMASNYDVSVVGVTISAEQQKMAQERCE--GLD--VTILLQDYRDL--NDQFDRI 232
Query: 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG 760
+S M E VG + + +F + L +G+ +L I N +I +YIFP
Sbjct: 233 VSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN----VDPWINKYIFPN 288
Query: 761 GCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIR 820
GCLPS+ +I A S +E N G Y TL W + F+ +I A ++++F R
Sbjct: 289 GCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKR 345
Query: 821 TWEYYFDYCAAGFKSYTLGNYQ 842
+ YY + CA F++ + +Q
Sbjct: 346 MFTYYLNACAGAFRARDIQLWQ 367
|
Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 13/268 (4%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K + G +L+
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70
Query: 636 IGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695
+GCGWG + V++ G+TLS+ Q + + V + R+ L + Q +
Sbjct: 71 VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE-- 128
Query: 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS--IPDERYNEYRLSS--- 750
DRI+S E GHE + FF LL DG+++L I+ P E + S
Sbjct: 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF 188
Query: 751 ----DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806
FI IFPGG LPS+ + S A+ V +V+++ HY +TL W +
Sbjct: 189 ARFLKFIVTEIFPGGRLPSIPMVQECAS-ANGFTVTRVQSLQPHYAKTLDLWSAALQANK 247
Query: 807 SKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ +AL + + R + Y CA F+
Sbjct: 248 GQAIALQSEEVYER-YMKYLTGCAEMFR 274
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U866|CMAS1_MYCTA Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 133/268 (49%), Gaps = 13/268 (4%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K + G +L+
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70
Query: 636 IGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695
+GCGWG + V++ G+TLS+ Q + + V + R+ L + Q +
Sbjct: 71 VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE-- 128
Query: 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS--IPDERYNEYRLSS--- 750
DRI+S E GHE + FF LL DG+++L I+ P E + S
Sbjct: 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTF 188
Query: 751 ----DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806
FI IFPGG LPS+ + S A+ V +V+++ HY +TL W +
Sbjct: 189 ARFLKFIVTEIFPGGRLPSIPMVQECAS-ANGFTVTRVQSLQPHYAKTLDLWSAALQANK 247
Query: 807 SKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ +AL + + R + Y CA F+
Sbjct: 248 GQAIALQSEEVYER-YMKYLTGCAEMFR 274
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q49807|CMAS2_MYCLE Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 132/278 (47%), Gaps = 23/278 (8%)
Query: 577 ISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636
+ HYD SNE F L+LD SMTYSCA F+ D L+ AQ K L + K + G +L+I
Sbjct: 23 VQSHYDRSNEFFKLWLDPSMTYSCAYFERPDLTLEEAQRAKRDLALSKLGLEPGMTLLDI 82
Query: 637 GCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIR---LYLCDYRQLAK 693
GCGWG+ + +++ G+TLS QL + ++K E R + L + Q +
Sbjct: 83 GCGWGSTMLHAIEKYDVNVIGLTLSANQLAHNKLKFAEIDHTRTDRTKDVRLQGWEQFDE 142
Query: 694 ANKYDRIISCEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER-YNE 745
DRIIS E G E + FF C +L +DG ++L I +PD + E
Sbjct: 143 P--VDRIISLGAFEHFADGAGDAGFERYDSFFKMCYDVLPDDGRMLLHTIIVPDAKETKE 200
Query: 746 YRLSS--------DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRC 797
L++ FI IFPGG LP +S++ S A VE+ IG HY TL
Sbjct: 201 LGLTTPMSLLRFIKFILTEIFPGGRLPKISQVDHYSSNAG-FTVERYHRIGSHYVPTLNA 259
Query: 798 WRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKS 835
W + + +AL + T+ +Y C+ F+
Sbjct: 260 WAAALEAHKDEAIALQ-GRQIYDTYMHYLTGCSDLFRD 296
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium leprae (taxid: 1769) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q79FX6|MMAA2_MYCTU Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
N LT ++ HYDLS++ F LFLD + TYSCA F+ ED L+ AQ+ K+ L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L+IGCGWG + + G+TLS+ Q + + E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAG 122
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS-IPDERYNEY 746
+ Q + DRI+S E GH+ +FF +L DG+L+L I+ + ++ ++
Sbjct: 123 WEQFNEP--VDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 747 RLS--------SDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798
L FI IFPGG P++ + S + + + +++ HY +TL W
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV-EEQSAKTGFTLTRRQSLQPHYARTLDLW 239
Query: 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ E +S+ +A+ + + R + Y CA F+
Sbjct: 240 AEALQEHKSEAIAIQSEEVYER-YMKYLTGCAKLFR 274
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U029|MMAA2_MYCTA Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
N LT ++ HYDLS++ F LFLD + TYSCA F+ ED L+ AQ+ K+ L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L+IGCGWG + + G+TLS+ Q + + E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAG 122
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS-IPDERYNEY 746
+ Q + DRI+S E GH+ +FF +L DG+L+L I+ + ++ ++
Sbjct: 123 WEQFNEP--VDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 747 RLS--------SDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798
L FI IFPGG P++ + S + + + +++ HY +TL W
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV-EEQSAKTGFTLTRRQSLQPHYARTLDLW 239
Query: 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ E +S+ +A+ + + R + Y CA F+
Sbjct: 240 AEALQEHKSEAIAIQSEEVYER-YMKYLTGCAKLFR 274
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7U1J9|MMAA2_MYCBO Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
N LT ++ HYDLS++ F LFLD + TYSCA F+ ED L+ AQ+ K+ L + K +
Sbjct: 3 NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L+IGCGWG + + G+TLS+ Q + + E R+ L
Sbjct: 63 QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPLDRRVLLAG 122
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS-IPDERYNEY 746
+ Q + DRI+S E GH+ +FF +L DG+L+L I+ + ++ ++
Sbjct: 123 WEQFNEP--VDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 747 RLS--------SDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798
L FI IFPGG P++ + S + + + +++ HY +TL W
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV-EEQSAKTGFTLTRRQSLQPHYARTLDLW 239
Query: 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFK 834
+ E +S+ +A+ + + R + Y CA F+
Sbjct: 240 AEALQEHKSEAIAIQSEEVYER-YMKYLTGCAKLFR 274
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7D9R5|CMAS3_MYCTU Cyclopropane mycolic acid synthase 3 OS=Mycobacterium tuberculosis GN=pcaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 15/276 (5%)
Query: 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSK 629
LT N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K +
Sbjct: 5 LTPHFGNVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEP 64
Query: 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689
G +L+IGCGWG +++ G+TLSE Q + + + R+ L +
Sbjct: 65 GMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWE 124
Query: 690 QLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER------- 742
+ + DRI+S E GH+ FF L DG ++L I P +
Sbjct: 125 KFDEP--VDRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGL 182
Query: 743 --YNEYRLSSDFIKEYIFPGGCLPSLSRITS-AMSVASRLCVEQVENIGIHYYQTLRCWR 799
+E + FI IFPGG LPS+ + A V R V V+++ +HY +TL W
Sbjct: 183 TLTHELVHFTKFILAEIFPGGWLPSIPTVHEYAEKVGFR--VTAVQSLQLHYARTLDMWA 240
Query: 800 KNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKS 835
+ + +A+ + R + Y CA F+
Sbjct: 241 TALEANKDQAIAIQSQTVYDR-YMKYLTGCAKLFRQ 275
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the proximal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 842 | ||||||
| 224099967 | 862 | predicted protein [Populus trichocarpa] | 0.996 | 0.973 | 0.833 | 0.0 | |
| 225433227 | 865 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.973 | 0.818 | 0.0 | |
| 224107479 | 866 | predicted protein [Populus trichocarpa] | 1.0 | 0.972 | 0.816 | 0.0 | |
| 255575825 | 865 | methyltransferase, putative [Ricinus com | 1.0 | 0.973 | 0.806 | 0.0 | |
| 359477758 | 865 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.973 | 0.801 | 0.0 | |
| 296083708 | 898 | unnamed protein product [Vitis vinifera] | 1.0 | 0.937 | 0.780 | 0.0 | |
| 147791135 | 874 | hypothetical protein VITISV_025151 [Viti | 0.984 | 0.948 | 0.804 | 0.0 | |
| 50313464 | 865 | cyclopropane fatty acid synthase [Gossyp | 1.0 | 0.973 | 0.798 | 0.0 | |
| 296083705 | 881 | unnamed protein product [Vitis vinifera] | 1.0 | 0.955 | 0.773 | 0.0 | |
| 297831102 | 867 | hypothetical protein ARALYDRAFT_898865 [ | 0.996 | 0.967 | 0.766 | 0.0 |
| >gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1508 bits (3905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/842 (83%), Positives = 778/842 (92%), Gaps = 3/842 (0%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MRVAV+GAGISGLVSAYVLAKAGVEVVLYEK+DYLGGHAKTV+FDGVDLDLGFMVFNRVT
Sbjct: 1 MRVAVVGAGISGLVSAYVLAKAGVEVVLYEKEDYLGGHAKTVSFDGVDLDLGFMVFNRVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNMMEFFESLG+DME+SDMSFSVSL++G GCEWGSRNGLS LFAQKKN+LNPYFW+MLR
Sbjct: 61 YPNMMEFFESLGIDMELSDMSFSVSLDEGQGCEWGSRNGLSGLFAQKKNMLNPYFWKMLR 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
EIIKFKDDVL YLE LE+NPD+DR+ETLG+FV SRGYSELFQKAYLIP+CGSIWSCPSEG
Sbjct: 121 EIIKFKDDVLSYLEMLENNPDVDRNETLGKFVKSRGYSELFQKAYLIPVCGSIWSCPSEG 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V SFSAFSVLSFCRNHHLL++FGRPQWLTV RSHSYV+KVR++LESWGCQIRT E+ +
Sbjct: 181 VMSFSAFSVLSFCRNHHLLEVFGRPQWLTVTRRSHSYVDKVREKLESWGCQIRTGCEIQA 240
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFL 300
V D+ ++C DG E Y+ C+MA+HAPDAL +LG QATFDETRILGAFQY+YSDIFL
Sbjct: 241 VSTTDE---VLCRDGLLEMYSGCIMAVHAPDALALLGKQATFDETRILGAFQYMYSDIFL 297
Query: 301 HRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL 360
HRDK+FMPQN AAWSAWNFL S D+KVCLTYWLNVLQN+ ET LPFLVTLNPDH P+HTL
Sbjct: 298 HRDKKFMPQNSAAWSAWNFLGSTDNKVCLTYWLNVLQNIDETGLPFLVTLNPDHAPDHTL 357
Query: 361 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420
+KWSTGHPVPSVAA+KASLELDHIQGKR IWFCGAYQGYGFHEDGLK+GM AAHG+LG S
Sbjct: 358 VKWSTGHPVPSVAATKASLELDHIQGKRRIWFCGAYQGYGFHEDGLKSGMVAAHGLLGNS 417
Query: 421 CTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTV 480
C + SNP+HM PS+ ETGARLFV RFLG YISTG +ILLEEGGT+F+FEGT K C LKTV
Sbjct: 418 CAILSNPKHMAPSMLETGARLFVTRFLGHYISTGCLILLEEGGTVFSFEGTSKKCSLKTV 477
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
L++H+PQFYWK+MTQADLGLADAYINGDFSFV+KDEGLLNLFMILI NRD + S SKL +
Sbjct: 478 LKVHNPQFYWKIMTQADLGLADAYINGDFSFVNKDEGLLNLFMILIVNRDANKSASKLNK 537
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
KRGWW+P+LFTAGIASAK+F +HISRQNTLTQARRNISRHYDLSNELF+LFLDE+MTYSC
Sbjct: 538 KRGWWTPLLFTAGIASAKFFIQHISRQNTLTQARRNISRHYDLSNELFALFLDETMTYSC 597
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
VFK+EDEDLK AQMRK+SLLIEKAR+SK E+LEIGCGWGTLAIE V+RTGCKYTGITL
Sbjct: 598 GVFKTEDEDLKDAQMRKISLLIEKARISKDHEILEIGCGWGTLAIEAVQRTGCKYTGITL 657
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
SEEQLKYAEMKVKEAGLQD I +LCDYRQL K +KYDRIISCEMIEAVGHE+MEEFFGC
Sbjct: 658 SEEQLKYAEMKVKEAGLQDRIAFHLCDYRQLPKTHKYDRIISCEMIEAVGHEYMEEFFGC 717
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780
CES+LAE+GLLVLQFISIP+ERY+EYR SSDFIKEYIFPGGCLPSL+RITSAM+ +SRLC
Sbjct: 718 CESVLAENGLLVLQFISIPEERYDEYRQSSDFIKEYIFPGGCLPSLTRITSAMAASSRLC 777
Query: 781 VEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840
VE VENIGIHYYQTL+ WRKNF+EKQ KILALGFN+KFIRTWEYYFDYCAAGFK++TLGN
Sbjct: 778 VEHVENIGIHYYQTLKYWRKNFLEKQRKILALGFNEKFIRTWEYYFDYCAAGFKTHTLGN 837
Query: 841 YQ 842
YQ
Sbjct: 838 YQ 839
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1492 bits (3862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/842 (81%), Positives = 770/842 (91%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MR AVIGAG+SGLVSAYVLA+AG++VVLYEK+DYLGGHAKTVT DGV LDLGFMVFNRVT
Sbjct: 1 MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKEDYLGGHAKTVTVDGVPLDLGFMVFNRVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNMMEFFE+LGVDME+SDMSF+VSL++G GCEWGSRNGLSSLFAQKKN+LNPYFWQM+
Sbjct: 61 YPNMMEFFETLGVDMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQMIG 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
++IKFKDDVL YLEELE+NPD+DR++TLG F+ RGYSELFQKAYL+PIC SIWSCP+EG
Sbjct: 121 DVIKFKDDVLKYLEELENNPDMDRNQTLGDFIKCRGYSELFQKAYLVPICASIWSCPAEG 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V +FSAFSVLSFCRNHHLLQLFGRPQWLTV+WRSH YVNKVR++LES GCQIRT EV S
Sbjct: 181 VMTFSAFSVLSFCRNHHLLQLFGRPQWLTVKWRSHYYVNKVREELESKGCQIRTGCEVVS 240
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFL 300
V D GCT+ CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R+LGAFQYV SDIFL
Sbjct: 241 VSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDIFL 300
Query: 301 HRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL 360
H DK FMPQNPAAWSAWNFL + D+KVCLTYWLNVLQN+ +TS PFLVTLNP H P+HTL
Sbjct: 301 HCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNIDQTSRPFLVTLNPPHTPDHTL 360
Query: 361 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420
LKWST HP PSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGM AAHG+LGK
Sbjct: 361 LKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHGMLGKG 420
Query: 421 CTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTV 480
C + +NP+HM+PSL ETGARLFV RFLG YISTG +ILLEEGGTI+TFEG+RK C LK
Sbjct: 421 CAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSRKKCLLKVS 480
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
L+IH+PQFYWK+ TQADLGLADAYINGDFS VDKDEGL NLFMI IANRDLDSS+S+L
Sbjct: 481 LKIHNPQFYWKIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFIANRDLDSSLSRLNN 540
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
KRGWW+P+ FTAGIASA+YFF+H+SRQNTLTQARRNISRHYDLSNELFSLFLDE+MTYSC
Sbjct: 541 KRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDLSNELFSLFLDETMTYSC 600
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
AVFK+E EDLK AQ+RK+SLLIEK R+ K EVLEIGCGWG+LAIE+VKRTGCKYTGITL
Sbjct: 601 AVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKRTGCKYTGITL 660
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
SEEQLK+AEMKVKEAGLQD IR LCDYRQL+ + KYDRIISCEM+EAVGHE+MEEFFGC
Sbjct: 661 SEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYMEEFFGC 720
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780
CES+LAEDGLLVLQFISIPDERY+EYR SSDFIKEYIFPGGCLPSLSR+T+AM+ +SRLC
Sbjct: 721 CESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAASSRLC 780
Query: 781 VEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840
+E +ENIGIHYYQTLR WRKNF+E QSKI+ LGFN+KFIRTWEYYFDYCAAGFK++TLGN
Sbjct: 781 MEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKTHTLGN 840
Query: 841 YQ 842
YQ
Sbjct: 841 YQ 842
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1478 bits (3825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/843 (81%), Positives = 772/843 (91%), Gaps = 1/843 (0%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MRVAV+GAGISGLVSAYVLAKAG EVVLYEK+D LGGHAKTV FDGVDLDLGFMVFNRVT
Sbjct: 1 MRVAVVGAGISGLVSAYVLAKAGAEVVLYEKEDSLGGHAKTVCFDGVDLDLGFMVFNRVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNMMEFFE+LG+DME+SDMSFSVSL++G GCEWGSRNG S LFAQKKN LNPYFW+MLR
Sbjct: 61 YPNMMEFFENLGIDMELSDMSFSVSLDQGKGCEWGSRNGFSGLFAQKKNALNPYFWKMLR 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
EI+KFKDDVL YLE LE+NP +DR+ETLGQFV SRGYSELFQKAYL+P+CGSIWSCPSEG
Sbjct: 121 EIVKFKDDVLSYLEVLENNPVVDRNETLGQFVKSRGYSELFQKAYLVPVCGSIWSCPSEG 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V +FSAFSVLSFCRNHHLLQLFGRPQWLTVR RSHSYVNKVR++LESWGCQIRT EV +
Sbjct: 181 VMNFSAFSVLSFCRNHHLLQLFGRPQWLTVRRRSHSYVNKVREKLESWGCQIRTGCEVQA 240
Query: 241 VLPADK-GCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIF 299
V D+ GC ++C DG E Y+ C+MA+HAPDAL +LG QATFDETRILGAFQY+YS+IF
Sbjct: 241 VSTTDEAGCAVLCIDGLLEMYSGCIMAVHAPDALGLLGEQATFDETRILGAFQYMYSEIF 300
Query: 300 LHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHT 359
LHRDK +MPQN AAWSAWNFL S ++KVCLTYWLNVLQN+ ET LPFLVTLNPD+ P+HT
Sbjct: 301 LHRDKTYMPQNSAAWSAWNFLGSTENKVCLTYWLNVLQNIDETGLPFLVTLNPDNAPDHT 360
Query: 360 LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGK 419
LLKWSTG PVPSVAA+KASLELDHIQGKR IWF GAYQGYGF+EDGLK+GM AAHG+LGK
Sbjct: 361 LLKWSTGRPVPSVAATKASLELDHIQGKRRIWFGGAYQGYGFYEDGLKSGMVAAHGLLGK 420
Query: 420 SCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKT 479
SC + NP+HM+PS+ ETGARLFV RFLG +ISTG + LLE+GGT+F+FEGT K C LKT
Sbjct: 421 SCDILRNPKHMVPSMLETGARLFVTRFLGHHISTGCLTLLEDGGTVFSFEGTSKKCSLKT 480
Query: 480 VLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLK 539
VL++H+PQFYWK+MTQADLGLADAYINGDFSFVDKDEGL+NLFMILI NRD D+S SKL
Sbjct: 481 VLKVHNPQFYWKIMTQADLGLADAYINGDFSFVDKDEGLINLFMILIVNRDADNSTSKLN 540
Query: 540 QKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYS 599
+KRGWW+P+LFTAGIASAK+F +H+SRQNTLTQARRNISRHYDLSNELF+LFLDE+MTYS
Sbjct: 541 KKRGWWTPLLFTAGIASAKFFIQHVSRQNTLTQARRNISRHYDLSNELFALFLDETMTYS 600
Query: 600 CAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGIT 659
CA+FK EDEDLKAAQ+RK+SLLIEKARV+K EVLEIGCGWGTLAIE+V+RTGCKYTGIT
Sbjct: 601 CALFKKEDEDLKAAQIRKISLLIEKARVNKDHEVLEIGCGWGTLAIEVVQRTGCKYTGIT 660
Query: 660 LSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFG 719
LSEEQLKYAE+KVKEAGLQD I+ +LCDYRQL K +KYD IISCEMIEAVGHE+MEEFFG
Sbjct: 661 LSEEQLKYAELKVKEAGLQDSIKFHLCDYRQLPKTHKYDTIISCEMIEAVGHEYMEEFFG 720
Query: 720 CCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779
CCES+LAE+GL VLQFISIP+ERY+EYR SSDFIKEYIFPGGCLPSL+RITSAM+ +SRL
Sbjct: 721 CCESVLAENGLFVLQFISIPEERYDEYRKSSDFIKEYIFPGGCLPSLTRITSAMASSSRL 780
Query: 780 CVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLG 839
CVE VENIGI YYQTLR WRKNF+E Q +IL+LGFN+KFIRTWEYYFDYCAAGFK++TLG
Sbjct: 781 CVEHVENIGIQYYQTLRYWRKNFLENQREILSLGFNEKFIRTWEYYFDYCAAGFKTHTLG 840
Query: 840 NYQ 842
NYQ
Sbjct: 841 NYQ 843
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575825|ref|XP_002528810.1| methyltransferase, putative [Ricinus communis] gi|223531722|gb|EEF33544.1| methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1464 bits (3791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/842 (80%), Positives = 766/842 (90%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MRVAV+G GISGLVSAYVLAK GVEVVLYEK++YLGGHAKTV FDGVDLDLGFMVFN VT
Sbjct: 1 MRVAVVGGGISGLVSAYVLAKDGVEVVLYEKEEYLGGHAKTVCFDGVDLDLGFMVFNCVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNMMEFFESLGVDME+SDMSFSVSL+ G G EWGSRNGL LFAQK N NPYFWQM+R
Sbjct: 61 YPNMMEFFESLGVDMELSDMSFSVSLDNGKGYEWGSRNGLPGLFAQKTNAFNPYFWQMIR 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
E+IKFKDDVL YLE LE+NPDIDR+ETLG F+ SRGYSELFQKAYL+P+CGSIWSCPSE
Sbjct: 121 EVIKFKDDVLSYLEVLENNPDIDRNETLGNFIKSRGYSELFQKAYLVPMCGSIWSCPSEK 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V SFSA+S+LSFCRNHHLLQLFGRPQWLTV+ RSHSYV+KVR++LESWGC IRT EV
Sbjct: 181 VMSFSAYSILSFCRNHHLLQLFGRPQWLTVKCRSHSYVHKVREKLESWGCVIRTGHEVHL 240
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFL 300
V DKGCT++CGDGS E Y+ C++ +HAPDALK+LGNQATFDE R+LGAFQY+YS+IFL
Sbjct: 241 VSTNDKGCTVLCGDGSEEQYSRCIIGVHAPDALKLLGNQATFDEKRVLGAFQYLYSEIFL 300
Query: 301 HRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL 360
HRDK+FMPQ P AWSAWNFL + D+KVCLTYWLNVLQNLGET+LPFLVTLNPDH P++TL
Sbjct: 301 HRDKKFMPQKPTAWSAWNFLGNTDNKVCLTYWLNVLQNLGETNLPFLVTLNPDHTPDNTL 360
Query: 361 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420
LKW+TGHPVPSVAASKASLEL+HIQG+RG+WFCGAYQGYGFHEDGLK+GM AAH +L KS
Sbjct: 361 LKWTTGHPVPSVAASKASLELEHIQGRRGLWFCGAYQGYGFHEDGLKSGMVAAHSLLEKS 420
Query: 421 CTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTV 480
C + SNP+HM+PSL ETGARLFV+RFLGQYISTG +ILLEEGGTIFTFEGT K C +TV
Sbjct: 421 CAILSNPKHMVPSLLETGARLFVSRFLGQYISTGRVILLEEGGTIFTFEGTAKKCFSQTV 480
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
+++H+PQFYWK+MTQADLGLADAYINGDFSFVDKDEGLLNLFM+LI NRD + S+L +
Sbjct: 481 MKVHNPQFYWKIMTQADLGLADAYINGDFSFVDKDEGLLNLFMVLIVNRDANKPESELNK 540
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
++GWW+PMLFTA IASAK+FFRH+SRQN+LTQARRNISRHYDLSN+LFSLFLDE+MTYS
Sbjct: 541 RKGWWTPMLFTASIASAKFFFRHVSRQNSLTQARRNISRHYDLSNDLFSLFLDETMTYSS 600
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
AVFK+EDEDLKAAQMRK+SLLI KAR++K E+LEIGCGWGTLAIE+VKRTGCKYTGITL
Sbjct: 601 AVFKTEDEDLKAAQMRKISLLIGKARINKEHEILEIGCGWGTLAIEVVKRTGCKYTGITL 660
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
SEEQLKYAE +VKEAGLQD IR L DYRQL KYDRIISCEMIEAVGHE+ME+FF C
Sbjct: 661 SEEQLKYAEERVKEAGLQDSIRFQLRDYRQLPDTCKYDRIISCEMIEAVGHEYMEKFFSC 720
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780
CES+LA+DG++VLQFISIP+ERY EYR SSDFIKEYIFPGGCLPSL+RIT+AM+ ++RLC
Sbjct: 721 CESVLAKDGVIVLQFISIPEERYEEYRRSSDFIKEYIFPGGCLPSLTRITTAMAASTRLC 780
Query: 781 VEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840
VE VENIGIHYYQTLR WRKNF+E +SKI+ALGFN+KFIRTWEYYFDYCAAGFK+ TLGN
Sbjct: 781 VEHVENIGIHYYQTLRYWRKNFVENKSKIMALGFNEKFIRTWEYYFDYCAAGFKTLTLGN 840
Query: 841 YQ 842
YQ
Sbjct: 841 YQ 842
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477758|ref|XP_002281923.2| PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1456 bits (3770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/842 (80%), Positives = 762/842 (90%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MR AVIGAG+SGLVSAYVLA+AG++VVLYEK++YLGGHAKTVT DGV L+LGFM FN+VT
Sbjct: 1 MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKENYLGGHAKTVTVDGVPLNLGFMAFNQVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNM+EFFE+LG+DME+S MSF+VSL++G GCEWGSRNGLSSLFAQKKN+LNPYFWQM+
Sbjct: 61 YPNMLEFFETLGIDMELSAMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQMIG 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
E+IKFKDDVL YLEELE+NPDIDR++TLG F+ RGYSELFQKAYL+PIC SIW C +EG
Sbjct: 121 EMIKFKDDVLKYLEELENNPDIDRNQTLGDFIKCRGYSELFQKAYLVPICASIWPCSAEG 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V SFSAF VLSFCRNHHLLQLFG PQWLTV+ SH YVNKVR++LES GCQIRT+ EV S
Sbjct: 181 VMSFSAFLVLSFCRNHHLLQLFGHPQWLTVKCCSHYYVNKVREELESKGCQIRTACEVVS 240
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFL 300
V D GCTI CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R+LGAFQYV SDIFL
Sbjct: 241 VSTTDDGCTIFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDIFL 300
Query: 301 HRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL 360
HRDK FMPQNPAAWSAWNFL + ++KVCL+YWLNVLQN+ +TSLPFLVTLNP H P+HTL
Sbjct: 301 HRDKNFMPQNPAAWSAWNFLGTIENKVCLSYWLNVLQNIDQTSLPFLVTLNPSHTPDHTL 360
Query: 361 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420
LKWST HPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGM AAH +LGK
Sbjct: 361 LKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHSILGKG 420
Query: 421 CTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTV 480
C + +NP+HM+PSL ETGARLFV RFLG YISTG +ILLEEGGTI+TFEG+ K C LK
Sbjct: 421 CAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSGKKCLLKVA 480
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
L+IH+PQFYWKV TQADLGLADAYINGDFS VDKDEGL +LFMI IANRDLDSS+S+L +
Sbjct: 481 LKIHNPQFYWKVATQADLGLADAYINGDFSLVDKDEGLQSLFMIFIANRDLDSSLSRLNK 540
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
KRGWW+P+ FTAGIASAKY+F+H+SRQNTLTQARRN+SRHYDLSNELFSLFLDE+MTYSC
Sbjct: 541 KRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDLSNELFSLFLDETMTYSC 600
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
AVFK+E EDLK AQ+RK+SLLIEKAR+ K EVLEIGCGWG+LAIE+VK+TGCKYTGIT
Sbjct: 601 AVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKQTGCKYTGITP 660
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
S+EQLK+AEMKVKEAGLQD IR LCDYRQL + KYDRIISC M+E+VGHE+MEEFFGC
Sbjct: 661 SKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISCGMLESVGHEYMEEFFGC 720
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780
CES+LAEDGLLVLQFISIPDERY+EYR SSDFIKEYIFPGGCLPSLSR+T+AM+ ASRLC
Sbjct: 721 CESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMATASRLC 780
Query: 781 VEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840
VE +ENIGIHYYQTLR WRKNF+E QSKI+ LGFN+KFIRTWEYYFDYCAAGFK+ TLG+
Sbjct: 781 VEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKTRTLGD 840
Query: 841 YQ 842
YQ
Sbjct: 841 YQ 842
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083708|emb|CBI23697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1455 bits (3767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/875 (78%), Positives = 765/875 (87%), Gaps = 33/875 (3%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGF------- 53
MR AVIGAG+SGLVSAYVLA+AG++VVLYEK+DYLGGHAKTVT DGV LGF
Sbjct: 1 MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKEDYLGGHAKTVTVDGVTGILGFRNGTIMS 60
Query: 54 ----------------MVFNRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSR 97
M+ VTYPNMMEFFE+LGVDME+SDMSF+VSL++G GCEWGSR
Sbjct: 61 VNFVLLGTYILLDLIGMMARDVTYPNMMEFFETLGVDMELSDMSFAVSLDEGRGCEWGSR 120
Query: 98 NGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGY 157
NGLSSLFAQKKN+LNPYFWQM+ ++IKFKDDVL YLEELE+NPD+DR++TLG F+ RGY
Sbjct: 121 NGLSSLFAQKKNILNPYFWQMIGDVIKFKDDVLKYLEELENNPDMDRNQTLGDFIKCRGY 180
Query: 158 SELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSY 217
SELFQKAYL+PIC SIWSCP+EGV +FSAFSVLSFCRNHHLLQLFGRPQWLTV+WRSH Y
Sbjct: 181 SELFQKAYLVPICASIWSCPAEGVMTFSAFSVLSFCRNHHLLQLFGRPQWLTVKWRSHYY 240
Query: 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILG 277
VNKVR++LES GCQIRT EV SV D GCT+ CGDGS+E ++ C+MA+HAPDAL ILG
Sbjct: 241 VNKVREELESKGCQIRTGCEVVSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILG 300
Query: 278 NQATFDETRILGAFQYVYSDIFLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQ 337
N+ATFDE R+LGAFQYV SDIFLH DK FMPQNPAAWSAWNFL + D+KVCLTYWLNVLQ
Sbjct: 301 NKATFDEMRVLGAFQYVSSDIFLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQ 360
Query: 338 NLGETSLPFLVTLNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQ 397
N+ +TS PFLVTLNP H P+HTLLKWST HP PSVAASKASLELDHIQGKRGIWFCGAYQ
Sbjct: 361 NIDQTSRPFLVTLNPPHTPDHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQ 420
Query: 398 GYGFHEDGLKAGMTAAHGVLGKSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMI 457
GYGFHEDGLKAGM AAHG+LGK C + +NP+HM+PSL ETGARLFV RFLG YISTG +I
Sbjct: 421 GYGFHEDGLKAGMVAAHGMLGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLI 480
Query: 458 LLEEGGTIFTFEGTRKNCHLKTVLRIHSPQFYWK----------VMTQADLGLADAYING 507
LLEEGGTI+TFEG+RK C LK L+IH+PQFYWK + TQADLGLADAYING
Sbjct: 481 LLEEGGTIYTFEGSRKKCLLKVSLKIHNPQFYWKAWPFHLHSLQIATQADLGLADAYING 540
Query: 508 DFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQKRGWWSPMLFTAGIASAKYFFRHISRQ 567
DFS VDKDEGL NLFMI IANRDLDSS+S+L KRGWW+P+ FTAGIASA+YFF+H+SRQ
Sbjct: 541 DFSLVDKDEGLQNLFMIFIANRDLDSSLSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQ 600
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
NTLTQARRNISRHYDLSNELFSLFLDE+MTYSCAVFK+E EDLK AQ+RK+SLLIEK R+
Sbjct: 601 NTLTQARRNISRHYDLSNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRI 660
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
K EVLEIGCGWG+LAIE+VKRTGCKYTGITLSEEQLK+AEMKVKEAGLQD IR LCD
Sbjct: 661 DKKHEVLEIGCGWGSLAIEVVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLCD 720
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR 747
YRQL+ + KYDRIISCEM+EAVGHE+MEEFFGCCES+LAEDGLLVLQFISIPDERY+EYR
Sbjct: 721 YRQLSDSYKYDRIISCEMLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYR 780
Query: 748 LSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQS 807
SSDFIKEYIFPGGCLPSLSR+T+AM+ +SRLC+E +ENIGIHYYQTLR WRKNF+E QS
Sbjct: 781 RSSDFIKEYIFPGGCLPSLSRVTTAMAASSRLCMEHLENIGIHYYQTLRHWRKNFLENQS 840
Query: 808 KILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
KI+ LGFN+KFIRTWEYYFDYCAAGFK++TLGNYQ
Sbjct: 841 KIIELGFNEKFIRTWEYYFDYCAAGFKTHTLGNYQ 875
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791135|emb|CAN68017.1| hypothetical protein VITISV_025151 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/842 (80%), Positives = 758/842 (90%), Gaps = 13/842 (1%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MR AVIGAG+SGLVSAYVLA+AG++VVLYEK+DYLGGHAKTVT DGV LDLGFMVFNRVT
Sbjct: 1 MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKEDYLGGHAKTVTVDGVPLDLGFMVFNRVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNMMEFFE+LGVBME+SDMSF+VSL++G GCEWGSRNGLSSLFAQKKN+LNPYFWQM+
Sbjct: 61 YPNMMEFFETLGVBMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQMIG 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
++IKFKDDVL YLEELE+NPD+DR++TLG F+ RGYSELFQKAYL+PIC SIWSCP+EG
Sbjct: 121 DVIKFKDDVLKYLEELENNPDMDRNQTLGDFIKCRGYSELFQKAYLVPICASIWSCPAEG 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V +FSAFSVLSFCRNHHLLQLFGRPQWLTV+WRSH YV+KVR++LES GC+IRT EV S
Sbjct: 181 VMTFSAFSVLSFCRNHHLLQLFGRPQWLTVKWRSHYYVHKVREELESKGCRIRTGCEVVS 240
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFL 300
V D GCT+ CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R+LGAFQYV SDIFL
Sbjct: 241 VSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDIFL 300
Query: 301 HRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL 360
H DK FMPQNPAAWSAWNFL + D+KVCLTYWLNVLQN+ +TS PFLVTLNP H P+HTL
Sbjct: 301 HCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNIDQTSRPFLVTLNPPHTPDHTL 360
Query: 361 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420
LKWST HP PSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGM AAHG+LGK
Sbjct: 361 LKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHGMLGKG 420
Query: 421 CTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTV 480
C + +NP+HM+PSL ETGARLFV RFLG YISTG +ILLEEGGTI+T EG+RK C L
Sbjct: 421 CAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTVEGSRKKCLL--- 477
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
K+ TQADLGLADAYINGDFS VDKDEGL NLFMI IANRDLDSS+S+L
Sbjct: 478 ----------KIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFIANRDLDSSLSRLNN 527
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
KRGWW+P+ FTAGIASAKYFF+H+SRQNTLTQARRNISRHYDLSNELFSLFLDE+MTYSC
Sbjct: 528 KRGWWTPLFFTAGIASAKYFFQHVSRQNTLTQARRNISRHYDLSNELFSLFLDETMTYSC 587
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
AVFK+E EDLK AQ+RK+SLLIEK R+ K EVLEIGCGWG+LAIE+VK+TGCKYTGITL
Sbjct: 588 AVFKTEREDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKQTGCKYTGITL 647
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
SEEQLK+AEMKVKEAGLQD IR LCDYRQL+ + KYDRIISCEM+EAVGHE+MEEFFGC
Sbjct: 648 SEEQLKFAEMKVKEAGLQDNIRFLLCDYRQLSDSYKYDRIISCEMLEAVGHEYMEEFFGC 707
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780
CES+LAEDGLLVLQFISIPDERY+EYR SSDFIKEYIFPGGCLPSLSR+T+AM+ ASRLC
Sbjct: 708 CESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAAASRLC 767
Query: 781 VEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840
+E +ENIGIHYYQTLR WRKNF+E QSKI+ LGFN+KFIRTWEYYFDYCAAGFK++TLGN
Sbjct: 768 MEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEYYFDYCAAGFKTHTLGN 827
Query: 841 YQ 842
YQ
Sbjct: 828 YQ 829
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50313464|gb|AAT74602.1| cyclopropane fatty acid synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1449 bits (3750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/842 (79%), Positives = 755/842 (89%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
M++AVIG GISG+VSAY LAKAG VVLYEK++YLGGH+KTV FDGVDLDLGFMVFNRVT
Sbjct: 1 MKIAVIGGGISGVVSAYTLAKAGANVVLYEKEEYLGGHSKTVHFDGVDLDLGFMVFNRVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNMME FESLG+DME DMS SVSL +G GCEWGSRNGLS+LFAQK N+ NPYFWQMLR
Sbjct: 61 YPNMMELFESLGIDMEPFDMSLSVSLNEGKGCEWGSRNGLSALFAQKSNLFNPYFWQMLR 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
EI+KFK+DV+ YLE LE+NPDIDR+ETLGQF+ S+GYS+LFQKAYL+P+CGSIWSCP+E
Sbjct: 121 EILKFKNDVISYLELLENNPDIDRNETLGQFIKSKGYSDLFQKAYLVPVCGSIWSCPTER 180
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
V FSAFS+LSFCRNHHLLQ+FGRPQW+TVRWRSH YVNKVR++LES GCQIRT EV S
Sbjct: 181 VMDFSAFSILSFCRNHHLLQIFGRPQWMTVRWRSHRYVNKVREELESTGCQIRTGCEVHS 240
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFL 300
VL +GCT++CGD S E Y C+MA+HAP AL++LGNQAT+DE+ +LGAFQYVYSDI+L
Sbjct: 241 VLSDAEGCTVLCGDDSHELYQGCIMAVHAPYALRLLGNQATYDESTVLGAFQYVYSDIYL 300
Query: 301 HRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL 360
HRDK MP+NPAAWSAWNFL S D V LTYWLNVLQNLGETSLPFLVTLNPD+ P+HTL
Sbjct: 301 HRDKNLMPKNPAAWSAWNFLGSTDKNVSLTYWLNVLQNLGETSLPFLVTLNPDYTPKHTL 360
Query: 361 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420
LKW TGHPVPSVAA+KASLELD IQGKRGIWFCGAY GYGFHEDGLKAGM AA+G+LGKS
Sbjct: 361 LKWRTGHPVPSVAATKASLELDRIQGKRGIWFCGAYLGYGFHEDGLKAGMIAANGLLGKS 420
Query: 421 CTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTV 480
C + SNP+HM+PSL ETGARLFV RFL +ISTG +ILLEEGGT+FTFEGT C LKTV
Sbjct: 421 CNILSNPKHMVPSLMETGARLFVTRFLSHFISTGCVILLEEGGTMFTFEGTSNKCSLKTV 480
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
+++HSP FYWKVMT+ADLGLAD+YINGDFSFVDK +GLLNL MILIANRDL SS SKL +
Sbjct: 481 IKVHSPHFYWKVMTEADLGLADSYINGDFSFVDKKDGLLNLVMILIANRDLISSNSKLSK 540
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
KRGWW+P+LFTAG+ SAKYFF+H+ RQNTLTQARRNISRHYDLSN+LF+LFLDE+MTYSC
Sbjct: 541 KRGWWTPLLFTAGLTSAKYFFKHVLRQNTLTQARRNISRHYDLSNDLFALFLDETMTYSC 600
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
AVFK+EDEDLK AQ RK+SLLIEKAR+ E+LEIGCGW +LAIE+VKRTGCKYTGITL
Sbjct: 601 AVFKTEDEDLKDAQHRKISLLIEKARIDSKHEILEIGCGWXSLAIEVVKRTGCKYTGITL 660
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
SEEQLK AE +VKEAGLQ+ IR LCDYRQL KYDRIISCEMIEAVGHE+ME+FFGC
Sbjct: 661 SEEQLKLAEKRVKEAGLQENIRFQLCDYRQLPSTYKYDRIISCEMIEAVGHEYMEDFFGC 720
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780
CES+LA+DGLLVLQFISIP+ERYNEYR SSDFIKEYIFPGGCLPSL+RIT+AM+ AS+LC
Sbjct: 721 CESVLADDGLLVLQFISIPEERYNEYRRSSDFIKEYIFPGGCLPSLARITTAMNAASKLC 780
Query: 781 VEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840
VE VENIG+HYYQTLR WRKNF+EKQSKI ALGFNDKFIRTWEYYFDYCAAGFKS TLGN
Sbjct: 781 VEHVENIGLHYYQTLRYWRKNFLEKQSKIHALGFNDKFIRTWEYYFDYCAAGFKSNTLGN 840
Query: 841 YQ 842
YQ
Sbjct: 841 YQ 842
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083705|emb|CBI23694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1415 bits (3662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/858 (77%), Positives = 754/858 (87%), Gaps = 16/858 (1%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
MR AVIGAG+SGLVSAYVLA+AG++VVLYEK++YLGGHAKTVT DGV L+LGFM FN+VT
Sbjct: 1 MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKENYLGGHAKTVTVDGVPLNLGFMAFNQVT 60
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
YPNM+EFFE+LG+DME+S MSF+VSL++G GCEWGSRNGLSSLFAQKKN+LNPYFWQM+
Sbjct: 61 YPNMLEFFETLGIDMELSAMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQMIG 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSEL-FQKAYLIPICGSIWSCPSE 179
E+IKFKDDVL YLEELE+NPDIDR++TLG F+ YS + ++PIC SIW C +E
Sbjct: 121 EMIKFKDDVLKYLEELENNPDIDRNQTLGDFIKCPLYSVISLSFKLIVPICASIWPCSAE 180
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVC 239
GV SFSAF VLSFCRNHHLLQLFG PQWLTV+ SH YVNKVR++LES GCQIRT+ EV
Sbjct: 181 GVMSFSAFLVLSFCRNHHLLQLFGHPQWLTVKCCSHYYVNKVREELESKGCQIRTACEVV 240
Query: 240 SVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIF 299
SV D GCTI CGDGS+E ++ C+MA+HAPDAL ILGN+ATFDE R+LGAFQYV SDIF
Sbjct: 241 SVSTTDDGCTIFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDIF 300
Query: 300 LHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHT 359
LHRDK FMPQNPAAWSAWNFL + ++KVCL+YWLNVLQN+ +TSLPFLVTLNP H P+HT
Sbjct: 301 LHRDKNFMPQNPAAWSAWNFLGTIENKVCLSYWLNVLQNIDQTSLPFLVTLNPSHTPDHT 360
Query: 360 LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLK----------AG 409
LLKWST HPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLK AG
Sbjct: 361 LLKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKVAIIKHPCSQAG 420
Query: 410 MTAAHGVLGKSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFE 469
M AAH +LGK C + +NP+HM+PSL ETGARLFV RFLG YISTG +ILLEEGGTI+TFE
Sbjct: 421 MVAAHSILGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFE 480
Query: 470 GTRKNCHLKTVLRIHSPQFYWK-----VMTQADLGLADAYINGDFSFVDKDEGLLNLFMI 524
G+ K C LK L+IH+PQFYWK + TQADLGLADAYINGDFS VDKDEGL +LFMI
Sbjct: 481 GSGKKCLLKVALKIHNPQFYWKESKKRIATQADLGLADAYINGDFSLVDKDEGLQSLFMI 540
Query: 525 LIANRDLDSSVSKLKQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLS 584
IANRDLDSS+S+L +KRGWW+P+ FTAGIASAKY+F+H+SRQNTLTQARRN+SRHYDLS
Sbjct: 541 FIANRDLDSSLSRLNKKRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDLS 600
Query: 585 NELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLA 644
NELFSLFLDE+MTYSCAVFK+E EDLK AQ+RK+SLLIEKAR+ K EVLEIGCGWG+LA
Sbjct: 601 NELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLA 660
Query: 645 IEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704
IE+VK+TGCKYTGIT S+EQLK+AEMKVKEAGLQD IR LCDYRQL + KYDRIISC
Sbjct: 661 IEVVKQTGCKYTGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQLPNSYKYDRIISCG 720
Query: 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLP 764
M+E+VGHE+MEEFFGCCES+LAEDGLLVLQFISIPDERY+EYR SSDFIKEYIFPGGCLP
Sbjct: 721 MLESVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLP 780
Query: 765 SLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEY 824
SLSR+T+AM+ ASRLCVE +ENIGIHYYQTLR WRKNF+E QSKI+ LGFN+KFIRTWEY
Sbjct: 781 SLSRVTTAMATASRLCVEHLENIGIHYYQTLRHWRKNFLENQSKIIELGFNEKFIRTWEY 840
Query: 825 YFDYCAAGFKSYTLGNYQ 842
YFDYCAAGFK+ TLG+YQ
Sbjct: 841 YFDYCAAGFKTRTLGDYQ 858
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831102|ref|XP_002883433.1| hypothetical protein ARALYDRAFT_898865 [Arabidopsis lyrata subsp. lyrata] gi|297329273|gb|EFH59692.1| hypothetical protein ARALYDRAFT_898865 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/844 (76%), Positives = 740/844 (87%), Gaps = 5/844 (0%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
M+VAVIG+GISGL SAYVLA GV EVVLYEK++ LGGHAKTV FDGVDLDLGFMVFNRV
Sbjct: 1 MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGGHAKTVRFDGVDLDLGFMVFNRV 60
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
TYPNMMEFFE+LGV+ME+SDMSF+VSL+ G GCEWGSRNG+S LFAQKKNVLNPYFWQM+
Sbjct: 61 TYPNMMEFFENLGVEMEVSDMSFAVSLDNGKGCEWGSRNGISGLFAQKKNVLNPYFWQMI 120
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
REI++FK+DVL Y+EELE NPDIDR ETLG+F+N+RGYSELFQKAYL+PICGSIWSCPS+
Sbjct: 121 REIVRFKEDVLKYIEELEGNPDIDRKETLGEFLNARGYSELFQKAYLVPICGSIWSCPSD 180
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVC 239
GV SFSA+SVLSFC NHHLLQ+FGRPQWLTV RS +YV KVR +LE GC I+TS ++
Sbjct: 181 GVLSFSAYSVLSFCCNHHLLQIFGRPQWLTVAGRSQTYVAKVRAELERLGCTIKTSCDIK 240
Query: 240 SVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI 298
SV ++ GC T+ GDGS E ++ C++A+HAPDAL++LG + TFDE+R+LGAF+YVYSDI
Sbjct: 241 SVSTSEDGCVTVTSGDGSEEVFDRCILAMHAPDALRLLGEEVTFDESRVLGAFRYVYSDI 300
Query: 299 FLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH 358
+LH D MP+N AAWSAWNFL S + KVC+TYWLN+LQNLGE PF VTLNPD P+
Sbjct: 301 YLHHDIDLMPRNQAAWSAWNFLGSTEKKVCVTYWLNILQNLGENREPFFVTLNPDETPKK 360
Query: 359 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLG 418
TLLKW+TGHPVPSVAA AS EL IQGKR +WFCGAYQGYGFHEDGLKAGM AA G+LG
Sbjct: 361 TLLKWTTGHPVPSVAAWTASQELHKIQGKRNLWFCGAYQGYGFHEDGLKAGMAAARGLLG 420
Query: 419 KSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLK 478
K L +NPRHM+PSL ETGARLFV RFLGQ+ISTGS+ +LEEGGT+FTFEG C LK
Sbjct: 421 KETALLNNPRHMVPSLTETGARLFVTRFLGQFISTGSVTILEEGGTMFTFEGKDSTCPLK 480
Query: 479 TVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKL 538
++L+IHSPQFYWKVMTQADLGLADAYINGDFSFVDKD GLLNL MILIANRD S+++K
Sbjct: 481 SILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDSGLLNLIMILIANRDTKSNLTK- 539
Query: 539 KQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTY 598
KRGWW+PM TAG+ASAKYF +H+SRQNTLTQARRNISRHYDLSNELF FLD++MTY
Sbjct: 540 --KRGWWTPMFLTAGLASAKYFLKHVSRQNTLTQARRNISRHYDLSNELFGFFLDDTMTY 597
Query: 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658
S AVF+S+DEDL+ AQMRK+SLLI+KAR+ K EVLEIGCGWGTLAIE+V+RTGCKYTGI
Sbjct: 598 SSAVFQSDDEDLRTAQMRKISLLIDKARIEKNHEVLEIGCGWGTLAIEVVRRTGCKYTGI 657
Query: 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFF 718
TLS EQLKYAE KVKEAGLQD I L DYRQL+ A+KYDRIISCEM+EAVGHEFME FF
Sbjct: 658 TLSIEQLKYAEEKVKEAGLQDRITFELRDYRQLSDAHKYDRIISCEMLEAVGHEFMEMFF 717
Query: 719 GCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778
CE+ LAE+GL+VLQFISIP+ERYNEYRLSSDFIKEYIFPGGCLPSL+R+TSAMS +SR
Sbjct: 718 SRCEAALAENGLIVLQFISIPEERYNEYRLSSDFIKEYIFPGGCLPSLARVTSAMSSSSR 777
Query: 779 LCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTL 838
LC+E VENIGIHYYQTLR WRKNF+E+Q +I+ALGF+DKFIRTWEYYFDYCAAGFK+ TL
Sbjct: 778 LCIEHVENIGIHYYQTLRVWRKNFLERQKQIMALGFDDKFIRTWEYYFDYCAAGFKTLTL 837
Query: 839 GNYQ 842
GNYQ
Sbjct: 838 GNYQ 841
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 842 | ||||||
| TAIR|locus:2088070 | 867 | AT3G23530 [Arabidopsis thalian | 0.996 | 0.967 | 0.768 | 0.0 | |
| TAIR|locus:2088712 | 867 | AT3G23510 [Arabidopsis thalian | 0.996 | 0.967 | 0.763 | 0.0 | |
| TAIR|locus:2088717 | 461 | AT3G23470 [Arabidopsis thalian | 0.514 | 0.939 | 0.699 | 2e-168 | |
| TAIR|locus:2090915 | 305 | AT3G23460 [Arabidopsis thalian | 0.251 | 0.695 | 0.628 | 2.7e-92 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.401 | 0.786 | 0.435 | 3.1e-74 | |
| UNIPROTKB|Q0C192 | 438 | HNE_1797 "Putative uncharacter | 0.477 | 0.917 | 0.389 | 6.7e-72 | |
| UNIPROTKB|Q5LTD2 | 447 | SPO1482 "Uncharacterized prote | 0.469 | 0.883 | 0.390 | 1.7e-68 | |
| TIGR_CMR|SPO_1482 | 447 | SPO_1482 "conserved hypothetic | 0.469 | 0.883 | 0.390 | 1.7e-68 | |
| UNIPROTKB|Q48MU4 | 415 | PSPPH_1007 "Uncharacterized pr | 0.475 | 0.963 | 0.363 | 8.5e-65 | |
| UNIPROTKB|Q74AM5 | 414 | GSU2327 "Uncharacterized prote | 0.470 | 0.956 | 0.375 | 1.1e-64 |
| TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3510 (1240.6 bits), Expect = 0., P = 0.
Identities = 649/844 (76%), Positives = 740/844 (87%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
M+VAVIG+GISGL SAYVLA GV EVVLYEK++ LGGHAKTV FDGVDLDLGFMVFNRV
Sbjct: 1 MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGGHAKTVRFDGVDLDLGFMVFNRV 60
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
TYPNMMEFFE+LGV+ME+SDMSF+VSL+ G GCEWGSRNG+S LFAQKKNVLNPYFWQM+
Sbjct: 61 TYPNMMEFFENLGVEMEVSDMSFAVSLDNGKGCEWGSRNGVSGLFAQKKNVLNPYFWQMI 120
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
REI++FK+DVL Y+EELE NPDIDR ETLG+F+NSRGYSELFQ+AYL+PICGSIWSCPS+
Sbjct: 121 REIVRFKEDVLKYIEELEGNPDIDRKETLGEFLNSRGYSELFQQAYLVPICGSIWSCPSD 180
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVC 239
GV SFSA+SVLSFC NHHLLQ+FGRPQWLTV RS +YV KVR +LE GC+IRTS +V
Sbjct: 181 GVLSFSAYSVLSFCCNHHLLQIFGRPQWLTVAGRSQTYVAKVRTELERLGCRIRTSCDVK 240
Query: 240 SVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI 298
SV ++ GC T+ GDGS+E ++ C++A+HAPDAL++LG + TFDE+R+LGAFQYVYSDI
Sbjct: 241 SVSTSENGCVTVTSGDGSKEVFDRCILAMHAPDALRLLGEEVTFDESRVLGAFQYVYSDI 300
Query: 299 FLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH 358
+LH D MP+N AAWSAWNFL S + KVC+TYWLN+LQNLGE S PF VTLNPD P+
Sbjct: 301 YLHHDIDLMPRNQAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSEPFFVTLNPDETPKK 360
Query: 359 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLG 418
TLLKW+TGHPVPSVAA AS EL IQGKR IWFCGAYQGYGFHEDGLKAGM AA G+LG
Sbjct: 361 TLLKWTTGHPVPSVAAWTASQELHKIQGKRNIWFCGAYQGYGFHEDGLKAGMAAARGLLG 420
Query: 419 KSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLK 478
K L +NPRHM+PSL ETGARLFV RFLGQ+ISTGS+ +LEEGGT+FTF G C LK
Sbjct: 421 KETALLNNPRHMVPSLTETGARLFVTRFLGQFISTGSVTILEEGGTMFTFGGKDSTCPLK 480
Query: 479 TVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKL 538
++L+IHSPQFYWKVMTQADLGLADAYINGDFSFVDK+ GLLNL MILIANRD S++SK
Sbjct: 481 SILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKESGLLNLIMILIANRDTKSNLSK- 539
Query: 539 KQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTY 598
KRGWW+PM TAG+ASAKYF +H+SRQNTLTQARRNISRHYDLSNELF FLD++MTY
Sbjct: 540 --KRGWWTPMFLTAGLASAKYFLKHVSRQNTLTQARRNISRHYDLSNELFGFFLDDTMTY 597
Query: 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658
S AVFKS+DEDL+ AQMRK+SLLI+KAR+ K EVLEIGCGWGTLAIE+V+RTGCKYTGI
Sbjct: 598 SSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKYTGI 657
Query: 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFF 718
TLS EQLKYAE KVKEAGLQD I L DYRQL+ A KYDRIISCEM+EAVGHEFME FF
Sbjct: 658 TLSIEQLKYAEEKVKEAGLQDWITFELRDYRQLSDAQKYDRIISCEMLEAVGHEFMEMFF 717
Query: 719 GCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778
CE+ LAE+GL+VLQFISIP+ERYNEYRLSSDFIKEYIFPGGCLPSL+R+T+AMS +SR
Sbjct: 718 SRCEAALAENGLIVLQFISIPEERYNEYRLSSDFIKEYIFPGGCLPSLARVTTAMSSSSR 777
Query: 779 LCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTL 838
LC+E VENIGIHYYQTLR WRKNF+ +Q +I+ALGF+DKF+RTWEYYFDYCAAGFK+ TL
Sbjct: 778 LCIEHVENIGIHYYQTLRLWRKNFLARQKQIMALGFDDKFVRTWEYYFDYCAAGFKTLTL 837
Query: 839 GNYQ 842
GNYQ
Sbjct: 838 GNYQ 841
|
|
| TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3493 (1234.7 bits), Expect = 0., P = 0.
Identities = 644/844 (76%), Positives = 740/844 (87%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
M+VAVIG+GISGL SAYVLA GV EVVLYEK++ LGGHAKTV FDGVDLDLGFMVFNRV
Sbjct: 1 MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGGHAKTVRFDGVDLDLGFMVFNRV 60
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
TYPNM+EFFE+LGV+ME+SDMSF+VSL+ G GCEWGSRNG+S LFAQKKNVLNPYFWQM+
Sbjct: 61 TYPNMIEFFENLGVEMEVSDMSFAVSLDNGKGCEWGSRNGVSGLFAQKKNVLNPYFWQMI 120
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
REI++FK+DVL Y+E+LE NPDIDR ETLG+F+N+RGYSELFQ+AYL+PICGSIWSCPS+
Sbjct: 121 REIVRFKEDVLNYIEKLEGNPDIDRKETLGEFLNTRGYSELFQQAYLVPICGSIWSCPSD 180
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVC 239
GV SFSA+SVLSFC NHHLLQ+FGRPQWLTV RS +YV KVR +LE GC+IRTS +V
Sbjct: 181 GVLSFSAYSVLSFCCNHHLLQIFGRPQWLTVAGRSQTYVAKVRAELERLGCKIRTSCDVK 240
Query: 240 SVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI 298
SV ++ GC T+ GDGS E ++ C++A+HAPDAL++LG + TFDE+R+LGAFQYVYSDI
Sbjct: 241 SVSTSENGCVTVTSGDGSEEVFDRCILAMHAPDALRLLGEEVTFDESRVLGAFQYVYSDI 300
Query: 299 FLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH 358
+LH D MP+N AAWSAWNFL S + KVC+TYWLN+LQNLGE S PF VTLNPD P+
Sbjct: 301 YLHHDIDLMPRNKAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSEPFFVTLNPDETPKK 360
Query: 359 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLG 418
LLKW+TGHPVPSVAAS AS EL IQGKR IWFCGAYQGYGFHEDGLKAGM AA G+LG
Sbjct: 361 ALLKWTTGHPVPSVAASIASQELHQIQGKRNIWFCGAYQGYGFHEDGLKAGMAAARGLLG 420
Query: 419 KSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLK 478
K L +NPRHM+PSL ETGARLFV RFLGQ+ISTGS+ +LEEGGT+FTF G C LK
Sbjct: 421 KETALLNNPRHMVPSLTETGARLFVTRFLGQFISTGSVTILEEGGTMFTFGGKDSTCPLK 480
Query: 479 TVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKL 538
++L+IHSPQFYWKVMTQADLGLADAYINGDFSFVDK+ GLLNL MILIANRD S+++K
Sbjct: 481 SILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKESGLLNLIMILIANRDTKSNLTK- 539
Query: 539 KQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTY 598
KRGWW+PM TAG+ASAKYF +H+SRQNTLTQARRNISRHYDLSNELF LFLD++MTY
Sbjct: 540 --KRGWWTPMFLTAGLASAKYFLKHVSRQNTLTQARRNISRHYDLSNELFGLFLDDTMTY 597
Query: 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658
S AVFKS+DEDL+ AQMRK+SLLI+KAR+ K EVLEIGCGWGTLAIE+V+RTGCKYTGI
Sbjct: 598 SSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKYTGI 657
Query: 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFF 718
TLS EQLKYAE KVKEAGLQD I L DYRQL+ A+KYDRIISCEM+EAVGHEFME FF
Sbjct: 658 TLSIEQLKYAEEKVKEAGLQDRITFELRDYRQLSDAHKYDRIISCEMLEAVGHEFMEMFF 717
Query: 719 GCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778
CE+ LAEDGL+VLQFIS P+ERYNEYRLSSDFIKEYIFPG C+PSL+++TSAMS +SR
Sbjct: 718 SRCEAALAEDGLMVLQFISTPEERYNEYRLSSDFIKEYIFPGACVPSLAKVTSAMSSSSR 777
Query: 779 LCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTL 838
LC+E VENIGIHYYQTLR WRKNF+E+Q +I+ALGF+DKF+RTWEYYFDYCAAGFK+ TL
Sbjct: 778 LCIEHVENIGIHYYQTLRLWRKNFLERQKQIMALGFDDKFVRTWEYYFDYCAAGFKTRTL 837
Query: 839 GNYQ 842
G+YQ
Sbjct: 838 GDYQ 841
|
|
| TAIR|locus:2088717 AT3G23470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
Identities = 303/433 (69%), Positives = 357/433 (82%)
Query: 410 MTAAHGVLGKSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFE 469
M A +L K TL +HM+ SL E+GARLFV RFL Q+IS G + +LEEGGT+F F
Sbjct: 1 MVIAQSLLWKEITLLKKIQHMVLSLTESGARLFVTRFLEQFISIGCVTILEEGGTMFIFG 60
Query: 470 GTRKNCHLKTVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANR 529
C LK++L+IHSPQFYWKVMTQADLGLADAYI+GDFSFVDKD GLLNL MILIANR
Sbjct: 61 EKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYISGDFSFVDKDSGLLNLIMILIANR 120
Query: 530 DLDSSVSKLKQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFS 589
D S S L +KRGWW+P+ TAG+AS KY+ +H+ +QNTLTQAR+NIS HYDLSNE F
Sbjct: 121 DQRSPKSNLVKKRGWWTPVFLTAGLASVKYYLKHVLKQNTLTQARKNISSHYDLSNEFFG 180
Query: 590 LFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVK 649
LF+D++M YS A+FKSE+ED + AQMRK+SLLIEKAR+ K EVLE+GCGWGT AIE+VK
Sbjct: 181 LFMDDTMMYSSAIFKSENEDPRTAQMRKISLLIEKARIEKNHEVLEMGCGWGTFAIEVVK 240
Query: 650 RTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV 709
RTGCKYTGITLS EQLKYA+ KVKEAGLQ I LCDYRQL+ A KYDRII+CEMIEAV
Sbjct: 241 RTGCKYTGITLSIEQLKYAKAKVKEAGLQGRITFMLCDYRQLSDARKYDRIIACEMIEAV 300
Query: 710 GHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRI 769
GHEFM++FF CCE LAE+G+ VLQF +IP+ Y+E RL+S FI EYIFPGGCLPSL+R+
Sbjct: 301 GHEFMDKFFSCCEDALAENGIFVLQFTAIPEALYDESRLTSGFITEYIFPGGCLPSLARV 360
Query: 770 TSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYC 829
TSAM+ +SRLC+E VENIGIHYY TLRCWRKNF+E+Q +I+ LGF+DKFIRTWEYYFDYC
Sbjct: 361 TSAMASSSRLCIENVENIGIHYYHTLRCWRKNFLERQKQIIDLGFDDKFIRTWEYYFDYC 420
Query: 830 AAGFKSYTLGNYQ 842
AAGFK+ TL +YQ
Sbjct: 421 AAGFKTLTLRSYQ 433
|
|
| TAIR|locus:2090915 AT3G23460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
Identities = 137/218 (62%), Positives = 169/218 (77%)
Query: 422 TLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFTFEGTRKNCHLKTVL 481
T SN +HM+ SL E AR F RFL +ISTG + + E GG + TFEG CHLK+ L
Sbjct: 3 TPMSNRKHMVMSLIEKAARFFFTRFLTHFISTGCVTIFE-GGNMVTFEGKDSRCHLKSEL 61
Query: 482 RIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQK 541
IHSPQFYWKVMTQ DLGLADAYINGDFSFV+K+ GLLNL MILIA+++L+S+ L +K
Sbjct: 62 EIHSPQFYWKVMTQVDLGLADAYINGDFSFVNKETGLLNLIMILIASKELNSN---LAEK 118
Query: 542 RGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCA 601
RG W+P+ T G++SAK+F +H+ RQN LTQARRNISRHYDLSNELF++FLD++M+YS
Sbjct: 119 RGRWTPIFLTTGLSSAKHFLKHLYRQNNLTQARRNISRHYDLSNELFTIFLDDTMSYSSG 178
Query: 602 VFKSEDEDLKAAQMRKVSLLIEK-ARVSKGQEVLE-IG 637
VFKS+DE+LK AQMRK+ LLIEK A +S E +E IG
Sbjct: 179 VFKSDDEELKIAQMRKIYLLIEKTAYLSCSIENVENIG 216
|
|
| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 156/358 (43%), Positives = 224/358 (62%)
Query: 487 QFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQKRGWWS 546
+F+ KV+ D+G ++++I GDF+ + L NL I I NR+ + L + WS
Sbjct: 75 RFFVKVLFGGDIGFSESFILGDFT----SDNLKNLIYIFIINRN---ELDNLNTR---WS 124
Query: 547 PMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSE 606
++ G+ F H +NT+ ++ NI HYDLSN++F LFLD++M+YSCA F
Sbjct: 125 FLM--DGVNR----FVHYLHRNTIEGSKENIKAHYDLSNDMFKLFLDKTMSYSCAYFNHR 178
Query: 607 DEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLK 666
++DL+ AQ K+ LI++A + K +LEIGCGWG LAIE VKRTGC+ TGI+LS+EQLK
Sbjct: 179 EQDLEEAQYNKIRKLIDQANLKKDHHLLEIGCGWGALAIEAVKRTGCRVTGISLSQEQLK 238
Query: 667 YAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA 726
Y +VKE GL+D I L DYR + ++D IISCEM+EAVG+E + +F E LL
Sbjct: 239 YGRERVKEEGLEDRIDLQYIDYRNVV--GQFDSIISCEMLEAVGYENYKTYFQSVERLLK 296
Query: 727 EDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVEN 786
+G+LVLQFI+ D+ + + DFI++YIFPGG LPS++ + ++ + S L ++
Sbjct: 297 PNGVLVLQFITFKDQDFEGLKKRCDFIQKYIFPGGLLPSITAVINSATENSNLVLQNSVT 356
Query: 787 IGIHYYQTLRCWRKNFMEKQSKILAL--GFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
G HY TL WR NF + KIL L GFN +FI ++YYF YC+A F + T+ Q
Sbjct: 357 FGTHYALTLDIWRNNFFSNKEKILNLKGGFNQQFINLFDYYFCYCSAAFDTRTINLIQ 414
|
|
| UNIPROTKB|Q0C192 HNE_1797 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 165/424 (38%), Positives = 245/424 (57%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--G--VDLDLGFMVFN 57
++A+IGAGISGL +A+ L K +V L+E+D GGHA T FD G +DLGF+V+N
Sbjct: 3 KIAIIGAGISGLGAAWAL-KDTADVTLFEQDKRAGGHANTHVFDYDGHPTAVDLGFIVYN 61
Query: 58 RVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQ 117
YPN++ FF+ LGV+ + SDMSF+VS G EW S L LFAQK+N+LNP F +
Sbjct: 62 ARNYPNLIAFFDELGVETQASDMSFAVS--DPSGWEWAST--LPGLFAQKRNLLNPDFHR 117
Query: 118 MLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCP 177
R I+KF + EL + + S LG +++ Y E F+K Y++P+ +IWS P
Sbjct: 118 FWRTILKFNNTARA---ELSAGLVTETS--LGAWLDRHCYDEAFRKNYILPMGAAIWSTP 172
Query: 178 SEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237
+ ++ A S F NH L+ RP+W TV S SYV K L+ ++R+
Sbjct: 173 EREMLNYPAQSFFQFFDNHRLMHK-ERPKWRTVTGGSQSYVKKAADGLDG---RLRSGVR 228
Query: 238 VCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSD 297
V + P ++ +G E ++ ++A H+ AL ++ ++ D+ +L + +Y +
Sbjct: 229 VERISPFGSRTSVHLDNGHTEIFDEVILAAHSNQALALVQDRYE-DQAFLLRSVRYRPNS 287
Query: 298 IFLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVP- 356
I+LHRD MP+ +AW++WN L+ +CLTYW+N LQ + ++S P +TLNP P
Sbjct: 288 IWLHRDPALMPKRKSAWASWNVLKQEGDDICLTYWMNRLQGI-DSSRPLFITLNPATPPK 346
Query: 357 -EHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHG 415
E+T L ++ HP AA A L+ IQGK +WF GA+ G GFHEDGLK+G+ A
Sbjct: 347 EEYTFLHYTLDHPQFDTAAEAAVRGLNRIQGKDNLWFAGAWMGRGFHEDGLKSGLFAGLS 406
Query: 416 VLGK 419
+ GK
Sbjct: 407 LGGK 410
|
|
| UNIPROTKB|Q5LTD2 SPO1482 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 162/415 (39%), Positives = 232/415 (55%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DGVD-LDLGFMVFNR 58
R+A++G GISGL +AY LA +V L+E LGGHA+TV +G +D GF+VFN
Sbjct: 11 RIAIVGGGISGLSAAYYLAPFH-DVTLFEAAPRLGGHARTVLAGKNGDQPVDTGFIVFNY 69
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQM 118
VTYP + F L V + S+MSF S+ G E+G N L+++ AQK N+L P +++M
Sbjct: 70 VTYPYLTRLFRDLDVPVIKSEMSFGASINDGQ-LEYGL-NTLTAILAQKGNLLRPQYFKM 127
Query: 119 LREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPS 178
+ +I++F G E + D +T+G+ V+ G F+ YL+P+CG+IWS P
Sbjct: 128 IADILRF-----GKRAEAAARDD---DKTIGELVDELGLGSWFRNNYLMPMCGAIWSTPV 179
Query: 179 EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238
V F A S++ F RNH LL G QW TV+ S YV ++ L + GC +RT+ V
Sbjct: 180 AEVDRFPAKSLVQFFRNHALLAGSGEHQWWTVKGGSIEYVRRLEAALVARGCTLRTNMPV 239
Query: 239 CSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI 298
V D G I GD R ++ ++A H+ LKILG AT E LG+ +Y +
Sbjct: 240 EQVQRDDFGVHIQTGDAQRATFDELILACHSDQTLKILGANATKAEASALGSIRYQANKA 299
Query: 299 FLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH 358
LH D MP+ A WS+W++ S D + +TYW+N LQ + E+ P VTLNP P H
Sbjct: 300 VLHCDTGQMPRRRACWSSWSY-RSQDGDIGVTYWMNKLQGIPESD-PLFVTLNPSK-PIH 356
Query: 359 TLLKWST---GHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGM 410
+ + HPV AA KA ++ +QG+ WF GA+ +GFHEDG+ + M
Sbjct: 357 SEAVYDEVQFHHPVFDKAALKAQQDIRQMQGQNHTWFAGAWNRHGFHEDGIASAM 411
|
|
| TIGR_CMR|SPO_1482 SPO_1482 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 162/415 (39%), Positives = 232/415 (55%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DGVD-LDLGFMVFNR 58
R+A++G GISGL +AY LA +V L+E LGGHA+TV +G +D GF+VFN
Sbjct: 11 RIAIVGGGISGLSAAYYLAPFH-DVTLFEAAPRLGGHARTVLAGKNGDQPVDTGFIVFNY 69
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQM 118
VTYP + F L V + S+MSF S+ G E+G N L+++ AQK N+L P +++M
Sbjct: 70 VTYPYLTRLFRDLDVPVIKSEMSFGASINDGQ-LEYGL-NTLTAILAQKGNLLRPQYFKM 127
Query: 119 LREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPS 178
+ +I++F G E + D +T+G+ V+ G F+ YL+P+CG+IWS P
Sbjct: 128 IADILRF-----GKRAEAAARDD---DKTIGELVDELGLGSWFRNNYLMPMCGAIWSTPV 179
Query: 179 EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238
V F A S++ F RNH LL G QW TV+ S YV ++ L + GC +RT+ V
Sbjct: 180 AEVDRFPAKSLVQFFRNHALLAGSGEHQWWTVKGGSIEYVRRLEAALVARGCTLRTNMPV 239
Query: 239 CSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI 298
V D G I GD R ++ ++A H+ LKILG AT E LG+ +Y +
Sbjct: 240 EQVQRDDFGVHIQTGDAQRATFDELILACHSDQTLKILGANATKAEASALGSIRYQANKA 299
Query: 299 FLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH 358
LH D MP+ A WS+W++ S D + +TYW+N LQ + E+ P VTLNP P H
Sbjct: 300 VLHCDTGQMPRRRACWSSWSY-RSQDGDIGVTYWMNKLQGIPESD-PLFVTLNPSK-PIH 356
Query: 359 TLLKWST---GHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGM 410
+ + HPV AA KA ++ +QG+ WF GA+ +GFHEDG+ + M
Sbjct: 357 SEAVYDEVQFHHPVFDKAALKAQQDIRQMQGQNHTWFAGAWNRHGFHEDGIASAM 411
|
|
| UNIPROTKB|Q48MU4 PSPPH_1007 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 153/421 (36%), Positives = 231/421 (54%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DG--VDLDLGFMVF 56
M++AVIG+GI+GL SAY+L +A EV ++E D++GGH TV +G +D GF+VF
Sbjct: 1 MKIAVIGSGIAGLTSAYLLNRAH-EVTVFESSDWVGGHTHTVDVQVEGRAYAIDTGFIVF 59
Query: 57 NRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFW 116
N TYPN + LGV + ++MSFSV + G E+ N L+SLFAQ+ N+L+P FW
Sbjct: 60 NDWTYPNFIRLLSQLGVGFKPAEMSFSVH-DPRTGVEYNGNN-LNSLFAQRSNLLSPRFW 117
Query: 117 QMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC 176
MLR+I++F + ++LE N I TLG+++ S GY + F Y++P+ +IWS
Sbjct: 118 GMLRDILRFNRQSV---DDLE-NQRIAADTTLGEYLKSGGYGQRFIDHYIVPMGAAIWSM 173
Query: 177 PSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236
+ F + F +NH LL + RPQW + S SYV + +IR S
Sbjct: 174 SLADMLGFPLQFFVRFFKNHGLLSVTHRPQWCVIEGGSRSYVEPLTASFRE---RIRLSC 230
Query: 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYS 296
V V G T+ GS F + V A H+ AL +L ++ +++ +LGA +Y +
Sbjct: 231 PVTRVERDSDGVTLQSAMGSERF-DKVVFACHSDQALALLAKPSSAEQS-VLGALRYAEN 288
Query: 297 DIFLHRDKRFMPQNPAAWSAWNFL--ESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDH 354
D+ LH D R +P+ AW++WN+ S +TY +N+LQ + ++ F V+LN
Sbjct: 289 DVVLHTDTRLLPERKLAWASWNYRLGGSEQQSAAVTYDMNILQGI-DSDTTFCVSLNQTA 347
Query: 355 V--PEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTA 412
P+ L ++ HP S+ A A + I G W+CGAY GFHEDG+ +G+
Sbjct: 348 AIDPKKILGRYRYAHPQYSLDAIAAQARWEEINGVDHTWYCGAYWANGFHEDGVVSGLRV 407
Query: 413 A 413
A
Sbjct: 408 A 408
|
|
| UNIPROTKB|Q74AM5 GSU2327 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 157/418 (37%), Positives = 229/418 (54%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTV--TFDGVDL--DLGFMVF 56
M +A+IG GI+GL +A++L V L+E +DYLGGH TV + DG L D GF+VF
Sbjct: 1 MNIAIIGGGIAGLATAHLLCDDH-RVTLFEANDYLGGHTNTVDVSLDGTTLAVDTGFIVF 59
Query: 57 NRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFW 116
N TYPN + E L V S MSFSV+ E+ +G E+ + N L +LFAQ++N LN FW
Sbjct: 60 NERTYPNFIRLLERLNVASRPSVMSFSVTSER-NGLEYCATN-LDTLFAQRRNFLNRPFW 117
Query: 117 QMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC 176
+MLREI++F + EL + ++ + TLG ++ +RGYS F + +L+P+ +IWS
Sbjct: 118 RMLREIVRFNREA----RELYDSHEM--TLTLGDYLKNRGYSVTFVENFLVPMGAAIWSA 171
Query: 177 PSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236
+ F A + + F NH +L + +P+W V S YV + + ++R S+
Sbjct: 172 DPKRFAMFPAAAFVRFFTNHGILNVVDQPRWRVVAGGSREYVAPLARPFRD---RVRLST 228
Query: 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYS 296
V V + G E+++ V+A H+ AL +L + + E +L A Y +
Sbjct: 229 PVDRVRRFPDRVAVTTRGGETEYFDQVVLACHSDQALAMLTDPSDA-ERELLSAIPYQEN 287
Query: 297 DIFLHRDKRFMPQNPAAWSAWNFLESFDSK--VCLTYWLNVLQNLGETSLPFLVTLNPDH 354
D LH D R +P P A ++WN + V +TYW+N LQ+L TS F VTLN
Sbjct: 288 DTVLHTDSRLLPGLPKARASWNCRIPRHERDGVFVTYWMNRLQSLA-TSTDFCVTLNGTE 346
Query: 355 V--PEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGM 410
PE + + + HPV S AA +A D I G W+CGAY GYGFHEDGL + +
Sbjct: 347 AIAPERIIRRITYHHPVYSPAAFEAQKRRDEISGTNRTWYCGAYWGYGFHEDGLNSAL 404
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 842 | |||
| COG2907 | 447 | COG2907, COG2907, Predicted NAD/FAD-binding protei | 1e-106 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 1e-94 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 1e-88 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 2e-67 | |
| pfam01593 | 444 | pfam01593, Amino_oxidase, Flavin containing amine | 1e-19 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 4e-19 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 2e-18 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-16 | |
| PRK07233 | 434 | PRK07233, PRK07233, hypothetical protein; Provisio | 2e-12 | |
| PRK11883 | 451 | PRK11883, PRK11883, protoporphyrinogen oxidase; Re | 2e-12 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 2e-12 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-12 | |
| COG3349 | 485 | COG3349, COG3349, Uncharacterized conserved protei | 2e-12 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 7e-11 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 5e-10 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 7e-10 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 1e-09 | |
| TIGR02734 | 502 | TIGR02734, crtI_fam, phytoene desaturase | 3e-09 | |
| TIGR00562 | 462 | TIGR00562, proto_IX_ox, protoporphyrinogen oxidase | 1e-08 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 1e-08 | |
| pfam01266 | 234 | pfam01266, DAO, FAD dependent oxidoreductase | 1e-08 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 2e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 3e-08 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 3e-08 | |
| COG1635 | 262 | COG1635, THI4, Ribulose 1,5-bisphosphate synthetas | 3e-08 | |
| COG0665 | 387 | COG0665, DadA, Glycine/D-amino acid oxidases (deam | 5e-08 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-08 | |
| COG3380 | 331 | COG3380, COG3380, Predicted NAD/FAD-dependent oxid | 5e-08 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 8e-08 | |
| PLN02576 | 496 | PLN02576, PLN02576, protoporphyrinogen oxidase | 2e-07 | |
| COG1231 | 450 | COG1231, COG1231, Monoamine oxidase [Amino acid tr | 2e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 8e-07 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 1e-06 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 1e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-06 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 1e-06 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 1e-06 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 3e-06 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 4e-06 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 6e-06 | |
| PRK01747 | 662 | PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)- | 7e-06 | |
| COG1148 | 622 | COG1148, HdrA, Heterodisulfide reductase, subunit | 9e-06 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 1e-05 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 2e-05 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 2e-05 | |
| PLN02268 | 435 | PLN02268, PLN02268, probable polyamine oxidase | 2e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-05 | |
| PRK12409 | 410 | PRK12409, PRK12409, D-amino acid dehydrogenase sma | 2e-05 | |
| PRK05335 | 436 | PRK05335, PRK05335, tRNA (uracil-5-)-methyltransfe | 2e-05 | |
| TIGR02733 | 492 | TIGR02733, desat_CrtD, C-3',4' desaturase CrtD | 3e-05 | |
| TIGR02732 | 474 | TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot | 3e-05 | |
| TIGR02731 | 453 | TIGR02731, phytoene_desat, phytoene desaturase | 3e-05 | |
| pfam00890 | 401 | pfam00890, FAD_binding_2, FAD binding domain | 3e-05 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 3e-05 | |
| PLN02676 | 487 | PLN02676, PLN02676, polyamine oxidase | 5e-05 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 6e-05 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 6e-05 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 7e-05 | |
| PRK00711 | 416 | PRK00711, PRK00711, D-amino acid dehydrogenase sma | 8e-05 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 9e-05 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 9e-05 | |
| pfam01494 | 349 | pfam01494, FAD_binding_3, FAD binding domain | 9e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-04 | |
| pfam01946 | 229 | pfam01946, Thi4, Thi4 family | 1e-04 | |
| PLN02487 | 569 | PLN02487, PLN02487, zeta-carotene desaturase | 1e-04 | |
| PLN02612 | 567 | PLN02612, PLN02612, phytoene desaturase | 1e-04 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-04 | |
| PRK06185 | 407 | PRK06185, PRK06185, hypothetical protein; Provisio | 2e-04 | |
| PRK06847 | 375 | PRK06847, PRK06847, hypothetical protein; Provisio | 2e-04 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 2e-04 | |
| PRK07538 | 413 | PRK07538, PRK07538, hypothetical protein; Provisio | 3e-04 | |
| COG0562 | 374 | COG0562, Glf, UDP-galactopyranose mutase [Cell env | 3e-04 | |
| TIGR00292 | 254 | TIGR00292, TIGR00292, thiazole biosynthesis enzyme | 3e-04 | |
| pfam03486 | 405 | pfam03486, HI0933_like, HI0933-like protein | 4e-04 | |
| PRK12842 | 574 | PRK12842, PRK12842, putative succinate dehydrogena | 5e-04 | |
| PRK06753 | 373 | PRK06753, PRK06753, hypothetical protein; Provisio | 5e-04 | |
| COG2081 | 408 | COG2081, COG2081, Predicted flavoproteins [General | 5e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 5e-04 | |
| PRK12834 | 549 | PRK12834, PRK12834, putative FAD-binding dehydroge | 5e-04 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 5e-04 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 6e-04 | |
| COG1004 | 414 | COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas | 6e-04 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 8e-04 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 9e-04 | |
| TIGR00755 | 253 | TIGR00755, ksgA, dimethyladenosine transferase | 0.001 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.001 | |
| PRK14106 | 450 | PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 0.001 | |
| COG0578 | 532 | COG0578, GlpA, Glycerol-3-phosphate dehydrogenase | 0.001 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 0.001 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 0.001 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 0.001 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 0.001 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 0.002 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 0.002 | |
| TIGR00275 | 400 | TIGR00275, TIGR00275, flavoprotein, HI0933 family | 0.002 | |
| PLN02396 | 322 | PLN02396, PLN02396, hexaprenyldihydroxybenzoate me | 0.002 | |
| PRK10015 | 429 | PRK10015, PRK10015, oxidoreductase; Provisional | 0.002 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 0.002 | |
| pfam03721 | 188 | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose | 0.002 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 0.002 | |
| PRK11728 | 393 | PRK11728, PRK11728, hydroxyglutarate oxidase; Prov | 0.003 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 0.003 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 0.003 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 0.003 | |
| cd08267 | 319 | cd08267, MDR1, Medium chain dehydrogenases/reducta | 0.003 | |
| COG1206 | 439 | COG1206, Gid, NAD(FAD)-utilizing enzyme possibly i | 0.004 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.004 | |
| TIGR00031 | 377 | TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu | 0.004 |
| >gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-106
Identities = 161/422 (38%), Positives = 235/422 (55%), Gaps = 21/422 (4%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD----GVDLDLGFMVF 56
++AVIG+GISGL +A++L++ +V L+E D LGGHA TV + GV +D GF+V+
Sbjct: 9 RKIAVIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVY 67
Query: 57 NRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFW 116
N TYPN+ F+++GVD + S MSFSVSL+ G G E+ GL+ L AQK+N+L P F
Sbjct: 68 NERTYPNLTRLFKTIGVDTKASFMSFSVSLDMG-GLEYSGLTGLAGLLAQKRNLLRPRFP 126
Query: 117 QMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC 176
ML EI++F L + TL Q++ R + F + +L P+ +IWS
Sbjct: 127 CMLAEILRFYRSDLAPSDNAGQGD-----TTLAQYLKQRNFGRAFVEDFLQPLVAAIWST 181
Query: 177 PSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236
P + + A + L F NH LL L RP W TV S +YV ++ + +I T +
Sbjct: 182 PLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRT 238
Query: 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYS 296
VC + G +V DG +++ V+A H AL +L ++ + +E ++LGA +Y +
Sbjct: 239 PVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL-DEPSPEERQLLGALRYSAN 297
Query: 297 DIFLHRDKRFMPQNPAAWSAWNFL---ESFDSKVCLTYWLNVLQNLGETSLPFLVTLN-- 351
LH D MP+ AW++WN+L + + LTYW+N LQ L + VTLN
Sbjct: 298 TAVLHTDASLMPRRLRAWASWNYLGTVQWELCQGSLTYWMNRLQALISVR-DYFVTLNNR 356
Query: 352 PDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMT 411
P P H + + + HP+ A +A EL +QG R WFCGAY G GFHEDGL+AG+
Sbjct: 357 PWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTWFCGAYFGRGFHEDGLQAGLA 416
Query: 412 AA 413
A
Sbjct: 417 VA 418
|
Length = 447 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 297 bits (763), Expect = 1e-94
Identities = 117/276 (42%), Positives = 164/276 (59%), Gaps = 7/276 (2%)
Query: 558 KYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRK 617
+ R + +++ +A NI HYDLSN+ + LFLD SMTYSCA F+ D L+ AQ K
Sbjct: 1 RIMLRRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAK 60
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
+ L++EK + G +L+IGCGWG LAI + G G+TLSEEQL YAE ++ GL
Sbjct: 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL 120
Query: 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
+D + + L DYR + +DRI+S M E VG E ++FF +LL G ++L I+
Sbjct: 121 EDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178
Query: 738 IPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRC 797
PD E+R DFI +YIFPGG LPS+S I S + V VE++ HY +TLR
Sbjct: 179 GPD---QEFRRFPDFIDKYIFPGGELPSISEILELAS-EAGFVVLDVESLRPHYARTLRL 234
Query: 798 WRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGF 833
WR+ F + + +AL ++++F R WE Y CAA F
Sbjct: 235 WRERFEANRDEAIAL-YDERFYRMWELYLAACAAAF 269
|
Length = 283 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 1e-88
Identities = 106/267 (39%), Positives = 148/267 (55%), Gaps = 5/267 (1%)
Query: 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSK 629
+ NI HYDLSN+ F+LFLD +MTYSCA F+ D L+ AQ K+ L+++K +
Sbjct: 3 KRRDFENIQAHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKP 62
Query: 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689
G +L+IGCGWG L +R G+TLS+ Q K+A +V GLQ + + L DYR
Sbjct: 63 GMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDYR 122
Query: 690 QLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN-EYRL 748
+ +DRI+S M E VGHE + FF +LL GL++L I+ E L
Sbjct: 123 DFDE--PFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTITGLHPDETSERGL 180
Query: 749 SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSK 808
FI +YIFPGG LPS+S I + S A VE VE++ HY +TL W +N + +
Sbjct: 181 PLKFIDKYIFPGGELPSISMIVESSSEAG-FTVEDVESLRPHYAKTLDLWAENLQANKDE 239
Query: 809 ILALGFNDKFIRTWEYYFDYCAAGFKS 835
+AL +++F R W Y CA F+
Sbjct: 240 AIAL-QSEEFYRMWMLYLTGCAVAFRI 265
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 2e-67
Identities = 117/356 (32%), Positives = 176/356 (49%), Gaps = 35/356 (9%)
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQ 540
+++H+P+F+ +V+ + LGL ++Y++G + D D L+ F + LD +
Sbjct: 39 IQVHNPRFFKRVLQEGSLGLGESYMDG---WWDCDR--LDEFFSRVLRAGLDEKL----- 88
Query: 541 KRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSC 600
L I A+ F + Q+ +A HYDL N+LF LD M YSC
Sbjct: 89 -PHHLKDTL---RILRARLF----NLQS-KKRAWIVGKEHYDLGNDLFEAMLDPRMQYSC 139
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
+K + + L+ AQ K+ L+ K ++ G VL+IGCGWG LA + G G+T+
Sbjct: 140 GYWK-DADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTI 198
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGC 720
S EQ K A+ + AGL + + L DYR L ++DRI+S M E VG + +F
Sbjct: 199 SAEQQKLAQERC--AGLP--VEIRLQDYRDLNG--QFDRIVSVGMFEHVGPKNYRTYFEV 252
Query: 721 CESLLAEDGLLVLQFISIPDERYNEYRLSSD-FIKEYIFPGGCLPSLSRITSAMSVASRL 779
L DGL +L I N+ + D +I +YIFP GCLPS+ +I A
Sbjct: 253 VRRCLKPDGLFLLHTIGS-----NKTDTNVDPWINKYIFPNGCLPSVRQIAQAS--EGLF 305
Query: 780 CVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKS 835
+E N G Y +TL W +NF E LA ++++F R W YY CA F++
Sbjct: 306 VMEDWHNFGADYDRTLMAWHENF-EAAWPELADNYSERFYRMWRYYLLSCAGAFRA 360
|
Length = 383 |
| >gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 81/455 (17%), Positives = 149/455 (32%), Gaps = 66/455 (14%)
Query: 10 ISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFE 69
++GL +A L +AG +V + E D +GG +TV FDG ++LG F+ YPN++
Sbjct: 1 LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGA-YPNLLNLLL 59
Query: 70 SLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV 129
LG+++ + F G L +L ++ + +
Sbjct: 60 ELGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEEPIRRA 119
Query: 130 LGYLE-ELESNPDIDRS--ETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSA 186
L L L P++ + +++ G+ ELF + + G++ P E SA
Sbjct: 120 LLLLVALLLLAPELLELDLLSFSDLLSAAGFLELFLLLFRSLLAGALGFLPLE----LSA 175
Query: 187 FSV-LSFCRNHHL--LQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLP 243
LS +F + + L +R ++ V S+
Sbjct: 176 RLALLSLRLFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGR---VRLNTRVRSITK 232
Query: 244 ADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY----VYSDIF 299
+ G T+ DG ++ ++ + +IL + A + S +F
Sbjct: 233 SGDGVTVTTVDGRTIEADAVIVTVPLGVLKRILFLPPLPAAKQ--EAIRNLGFGSVSKVF 290
Query: 300 LHRDKRFMPQN----------PAAWSA----WNFLESFDSKVCLTY-WLN---------- 334
L + F P+N + + V L+Y +
Sbjct: 291 LEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGDAARELEDLSD 350
Query: 335 ------VLQNLGETSLPFLVTLNPDHVPEHTLLKWSTGHPVP----SVAASKASLELDHI 384
VL++L L +P + W T P S
Sbjct: 351 EELLEAVLRDL-RKLLGPEDVPDPVNFLVS---DWHT-DPYARGSYSYPPVGDDSRYRPA 405
Query: 385 QGKR---GIWFCGAY---QGYGFHEDGLKAGMTAA 413
G++F G + G E +++G+ AA
Sbjct: 406 LRTPVGPGLFFAGEHTSGGYPGTVEGAVESGLRAA 440
|
This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-19
Identities = 66/303 (21%), Positives = 134/303 (44%), Gaps = 43/303 (14%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR 58
M++A+IG GI+GL +AY L KAG VEV L+E DD +GG +TV DG + G F
Sbjct: 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHF-L 59
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPY-FWQ 117
+++ + LG++ ++ W S ++ K L+P
Sbjct: 60 ARKEEILDLIKELGLEDKLL---------------WNST-ARKYIYYDGK--LHPIPTPT 101
Query: 118 MLR---EIIKFKDDVLGYLEEL--ESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGS 172
+L ++ + + L+E + + + ++G+F+ R + E + ++ P+
Sbjct: 102 ILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEG 160
Query: 173 IWSCPSEGVTSFSAF------------SVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNK 220
I++ ++ +++ +AF + + Q + ++ +R S +
Sbjct: 161 IYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEA 220
Query: 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQA 280
+ ++LE+ +IRT +EV + G TIV G + + + P+ ++LG++A
Sbjct: 221 LAEKLEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGDEA 277
Query: 281 TFD 283
Sbjct: 278 VSK 280
|
Length = 444 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 2e-18
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNM 64
++GAG+SGLV+AY+LAK G +V++ EK D +GG+A + G D G +F+ +YPN+
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHT-SYPNV 59
Query: 65 MEFFESL 71
E + L
Sbjct: 60 RELLDEL 66
|
Length = 66 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 633 VLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692
VL++GCG G LA+ + G + TG+ +S L+ A K A L D + + D +L
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELAR-KAAAALLADNVEVLKGDAEELP 60
Query: 693 KA--NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736
+D IIS + + E + F LL G+LVL +
Sbjct: 61 PEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLD 50
++A++G GI+GL +AY LAK G EV ++E DD LGG A + F G+ ++
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIE 49
|
Length = 434 |
| >gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLG---FMV 55
+VA+IG GI+GL +AY L K G ++ L E D LGG +TV DG ++LG F+
Sbjct: 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA 60
Query: 56 FNRVTYPNMMEFFESLG 72
P+ + LG
Sbjct: 61 RK----PSAPALVKELG 73
|
Length = 451 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
V VIGAG++GL +A +LA+AG++V + EK+D +GG A+T DG D G
Sbjct: 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSW---YL 60
Query: 61 YPNMMEFFESLG 72
P+ F LG
Sbjct: 61 MPDPGPLFRELG 72
|
Length = 487 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-12
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G VL+IGCG G+LAIE+ + G + TG+ LS E L+ A K L I D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGD 59
Query: 688 -YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734
L +D + G + E SLL G LVL
Sbjct: 60 APDALDLLEGFDAVFIGG-----GGGDLLELLDALASLLKPGGRLVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNRV 59
MRVA+ GAG++GL +AY LA AG +V LYE D LGG + DG ++ G VF
Sbjct: 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG- 59
Query: 60 TYPNMMEFFESLG 72
Y N++ + L
Sbjct: 60 CYYNLLTLLKELP 72
|
Length = 485 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-11
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V +IGAG +GL +AY L K G V + E D +GG ++TVT+ G D+G
Sbjct: 7 VVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIG 56
|
Length = 479 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 633 VLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691
VL+ GCG+G+ I++ +R + G T+S EQ + +++ GLQ IR++ YR
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIF---YRDS 59
Query: 692 AK---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL-QFISIPDERYNEYR 747
AK + YD + E+I + + + F L + G LVL FI+
Sbjct: 60 AKDPFPDTYDLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEE 117
Query: 748 LSSDFI 753
+S +
Sbjct: 118 TTSYLV 123
|
Length = 224 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689
G VL++GCG G L+ + R G TGI SE+ ++ A++ E+G+ DYR
Sbjct: 60 GLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGVN-------IDYR 111
Query: 690 Q------LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
Q + ++D + E++E V E F C L+ G+L L
Sbjct: 112 QATVEDLASAGGQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGILFL 159
|
Length = 243 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 617 KVSLLIEKARVSK----GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV 672
++ + + R +K G VL++GCG G L+ E + R G TGI SEE ++ A++
Sbjct: 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLS-EPLARLGANVTGIDASEENIEVAKLHA 87
Query: 673 KEAGLQDLIRLYLCDYRQL-------AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLL 725
K+ L + +YR A +D + E++E V + F C LL
Sbjct: 88 KKDPLLKI------EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV--PDPQAFIRACAQLL 139
Query: 726 AEDGLLVLQFI 736
G+L I
Sbjct: 140 KPGGILFFSTI 150
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
VIGAG GL A LA AG+ V + E+ D GG A + DG D G V T P
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVI---TMP 57
Query: 63 NMM-EFFESLGVDME 76
+ E F G D+
Sbjct: 58 EALEELFALAGRDLA 72
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502 |
| >gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 3 VAVIGAGISGLVSAYVLAK----AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR 58
V +IG GISGL +AY L K VE+ L E D +GG +TV DG ++ G F
Sbjct: 5 VVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSF-L 63
Query: 59 VTYPNMMEFFESLGV-DMEMSDMS 81
+ + + LG+ + +SD +
Sbjct: 64 ERKKSAPDLVKDLGLEHVLVSDAT 87
|
This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+VAV+G+G +GL +A LA+AG +V ++E+ D +GG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
|
Length = 471 |
| >gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
V VIG GI GL +AY LA+ G+ V L E+ D L A
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGD-LASGA 37
|
This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA------KTVTFDGVDLDLGFM 54
V ++GAG +G +A LAKAG++V++ EK G + + D
Sbjct: 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE 63
Query: 55 VFNRVTYPNMMEFFESLGVDMEMS 78
+ +VT G + +
Sbjct: 64 IERKVT----GARIYFPGEKVAIE 83
|
Length = 396 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 634 LEIGCGWGTLAIEIVK-RTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692
L+IGCG GTL +++ G +YTG+ +S L+ A ++ GL D +R+ L
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRV---RLDVLD 57
Query: 693 KAN----KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLL 731
+ +D +++ ++ + LL G+L
Sbjct: 58 AIDLDPGSFDVVVASNVLHHLAD--PRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
VA++GAG SGL +AY LAKAG++V ++E+ GG G+ G M+FN++
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG--------GM--WGGGMLFNKIV 75
|
Length = 257 |
| >gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
V ++GAG SGL +AY LAKAG++V ++E+ GG + G M+FN++
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG----------GIWGGGMLFNKIV 80
|
Length = 262 |
| >gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
M V +IG GI GL +AY LA+ G +V + E + GG
Sbjct: 5 MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41
|
Length = 387 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-08
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 634 LEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A 692
L++GCG G LA + +R G + TG+ LS E L A + + + D L
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53
Query: 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+D ++S ++ + E +L G LV+
Sbjct: 54 PDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFN 57
+A++GAGI+GL +AY L +AG EV ++EK +GG T DG D G F
Sbjct: 4 IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFK 58
|
Length = 331 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
+++ YDL N+L S L + R+ LI + G +VL+
Sbjct: 19 KVAKKYDLMNDLMSFGLH--RLW-----------------RRA--LISLLGIKPGDKVLD 57
Query: 636 IGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693
+ CG G +A+ + K G + G+ +SE L+ A K+K+ G+Q+ + + D L
Sbjct: 58 VACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116
Query: 694 ANKYDRIISCEMIEAVGH--EFMEEFF 718
N +D + + V + ++E +
Sbjct: 117 DNSFDAVTISFGLRNVTDIDKALKEMY 143
|
Length = 238 |
| >gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGHAKTVTFDG 46
VAV+GAG+SGL +AY LA GV V++ E D +GG+ +V+ DG
Sbjct: 14 DVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG 59
|
Length = 496 |
| >gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
V ++GAG++GL +AY L KAG +V + E D +GG + T G DLG N T+
Sbjct: 9 DVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-TH 67
Query: 62 PNMMEFFESLGV 73
++ + + GV
Sbjct: 68 DALLAYAKEFGV 79
|
Length = 450 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 628 SKGQEVLEIGCGWGTLAIEI--VKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL 685
G +VL++GCG G L + G + GI +SEE ++ A+ K+ G ++ +
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFIQ 60
Query: 686 CDYRQL----AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE 741
D +L + N +D +IS E++ + ++ +L G+L++ + E
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPD--PDKVLEEIIRVLKPGGVLIVSDPVLLSE 118
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-06
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
G+ VL++GCG G L+ E + R G TGI SEE ++ A + E+GL+ DY
Sbjct: 48 FGKRVLDVGCGGGILS-ESMARLGADVTGIDASEENIEVARLHALESGLK-------IDY 99
Query: 689 RQ-------LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
RQ ++D + EM+E V F C L+ GL+ F S
Sbjct: 100 RQTTAEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLV---FFS 150
|
Length = 233 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-06
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+VAVIGAG +GL +A+ LA+ G +V ++E D GG
Sbjct: 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
|
Length = 457 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 633 VLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691
VL+ G G G + + + G+ L E A ++ AGL +R+ + D R+L
Sbjct: 4 VLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63
Query: 692 --AKANKYDRIISC------EMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+D ++ + + F LL G+LV+
Sbjct: 64 LELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 574 RRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQE- 632
+ I+ YD S+ ++ E M + + D + AQ+R + + A V E
Sbjct: 58 KEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEK 117
Query: 633 ----VLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD- 687
++++GCG G + + ++ G GITLS Q A GL D + + D
Sbjct: 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA 177
Query: 688 YRQLAKANKYDRIISCE 704
Q + ++D + S E
Sbjct: 178 LNQPFEDGQFDLVWSME 194
|
Length = 340 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+VAVIGAG +GL +AY LA+AG V ++E+++ GG
Sbjct: 541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576
|
Length = 1019 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
+ VA++GAG +GL A LA+AG++V L E+ +
Sbjct: 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA--------PRELLERGRGIALS------ 48
Query: 61 YPNMMEFFESLGV 73
PN + E LG+
Sbjct: 49 -PNALRALERLGL 60
|
Length = 387 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 610 LKAAQMRKVSLLIEK--ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKY 667
+ + R ++ L+ + R+ G VL+IGCG G L + +R G TG+ S +
Sbjct: 1 YRRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRER-GFDVTGVDPSPAAVLI 59
Query: 668 AEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727
+ A KYD I + E++E + LL
Sbjct: 60 FSL--------------FDAPDPAVLAGKYDLITAFEVLEHLPD--PPALLQQLRELLKP 103
Query: 728 DGLLVLQ 734
G+L++
Sbjct: 104 GGVLLIS 110
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 27/108 (25%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV---DLDLGFMVFNR 58
RVAVIGAG +GL A +LA+AGV+VV++++ +GG +TF G+ LD + R
Sbjct: 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG---LLTF-GIPSFKLDKAVLSRRR 198
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQ 106
E F ++G++ + CE G L L
Sbjct: 199 -------EIFTAMGIEFHL-------------NCEVGRDISLDDLLED 226
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
A+IG GI+G A LA+ G +V LYE D+
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEADE 293
|
Length = 662 |
| >gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-06
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
V VIG G++G+ +A LA G +V L EK+ +GG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162
|
Length = 622 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V V+GAG GL +A AK G +V L E D LGG
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173
|
Length = 415 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+VAVIGAG +GL +A L++AG +V ++E+ GG
Sbjct: 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160
|
Length = 457 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
RVAVIG G +GL +AY L + G V ++E LGG
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
Length = 564 |
| >gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V VIG GI+G+ +A L A +V L E D +GG T G +D+G
Sbjct: 3 VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMG 52
|
Length = 435 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 607 DEDLKAAQMRKV-------SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGI 658
+ Q R LL A V K +L++G G G L + + +RT K G+
Sbjct: 15 FKQFFIIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGV 74
Query: 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA---NKYDRIIS 702
+ EE + A+ V L++ I++ D ++ KA +D II
Sbjct: 75 EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34
+AVIGAGI+G+ +AY LA+ G +V ++++ Y
Sbjct: 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35
|
Length = 410 |
| >gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-05
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYE 30
V VIGAG++G +A+ LAK GV V LYE
Sbjct: 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32
|
Length = 436 |
| >gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTV-----TFD 45
V VIGAGI+GL +A +LAK G V L E+ GG A T TFD
Sbjct: 4 VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFD 51
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492 |
| >gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNRVT 60
+VA++GAG++GL +A L AG EV +YE ++GG + V DG +++G VF
Sbjct: 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVF-FGC 59
Query: 61 YPNMMEFFESLG 72
Y N+ + +G
Sbjct: 60 YANLFRLMKKVG 71
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474 |
| >gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH-AKTVTFDGVDLDLGFMVFNRVT 60
RVA+ GAG++GL A LA AG ++ E D LGG A DG + G +F
Sbjct: 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG-A 59
Query: 61 YPNMMEFFESLGVD 74
YPNM++ + L ++
Sbjct: 60 YPNMLQLLKELNIE 73
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453 |
| >gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
V VIG+G++GL +A A+AG++V + EK GG
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGAT 38
|
This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 3e-05
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 576 NISRHYDLSNELFSLFLDES---MTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQE 632
+I+ YDL N+L S L T I+ V G +
Sbjct: 19 SIAPKYDLMNDLLSFGLHRVWRRKT------------------------IKWLGVRPGDK 54
Query: 633 VLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
VL++ CG G LAI + K G + G+ SE L K+++ GL + D
Sbjct: 55 VLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGD 111
|
Length = 239 |
| >gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVTFDGVDLDLG 52
V ++GAG+SG+ +A L++AG+E +++ E D +GG + F GV ++LG
Sbjct: 28 SVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELG 79
|
Length = 487 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
+VAVIGAG G A V A+AG+EVVL + +
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISE 32
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLD 50
VA+IGAG SGL +AY L +AGV + V++EK D +GG + + G+ LD
Sbjct: 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD 59
|
Length = 443 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V VIGAG +G V+A A+ G++V L EK + LGG
Sbjct: 5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41
|
Length = 454 |
| >gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-05
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVL 28
MRV V+G+G+ G+ SA+ LA+AG EV +
Sbjct: 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTV 28
|
Length = 416 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTV 42
+VAVIGAG +GL + Y LA+AG V ++EK + GG K +
Sbjct: 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI 579
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAI---EIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675
++ + +S G VLE G G G L V G T + E+ K A + E
Sbjct: 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEF 142
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRII 701
GL D + L L D R+ D +
Sbjct: 143 GLGDRVTLKLGDVREGIDEEDVDAVF 168
|
Length = 256 |
| >gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR--VT 60
V ++G G +GL+ A +LA+AGV VVL E+ HA T V R
Sbjct: 4 VLIVGGGPAGLMLALLLARAGVRVVLVER------HATTS------------VLPRAGGL 45
Query: 61 YPNMMEFFESLGVDMEMSDM 80
ME G++ +
Sbjct: 46 NQRTMELLRQAGLEDRILAE 65
|
This domain is involved in FAD binding in a number of enzymes. Length = 349 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
LL E A KG VLE+G G G +AI K G K G+ ++ ++ A+ K +++
Sbjct: 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN 72
Query: 680 L-IRLYLCDYRQLAKANKYDRII 701
+ + D + + +K+D I+
Sbjct: 73 NGVEVIRSDLFEPFRGDKFDVIL 95
|
Length = 188 |
| >gnl|CDD|145231 pfam01946, Thi4, Thi4 family | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
V ++GAG SGL +AY LAK G++V + E+ GG A G M+F+ +
Sbjct: 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAW----------GGGMLFSAM 66
|
This family includes a putative thiamine biosynthetic enzyme. Length = 229 |
| >gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNRV 59
++VA+IGAG++G+ +A L G EV +YE ++GG + V +G +++G VF
Sbjct: 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC 135
Query: 60 TYPNMMEFFESLGVDMEM 77
Y N+ + +G D +
Sbjct: 136 -YNNLFRLMKKVGADENL 152
|
Length = 569 |
| >gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH-AKTVTFDGVDLDLGFMVFNRV 59
++V + GAG++GL +A LA AG + +L E D LGG A DG + G +F
Sbjct: 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFG- 152
Query: 60 TYPNMMEFFESLGVD 74
YPN+ F LG++
Sbjct: 153 AYPNVQNLFGELGIN 167
|
Length = 567 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 633 VLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692
+L++GCG G + + + TG+ +S+E L+ A+ ++++ G + +R + D R L
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 693 KAN-KYDRIISC 703
+D +I
Sbjct: 59 FEEGSFDLVICA 70
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK-DDYL 35
++G G +G++ +LA+AGV+V + EK D+L
Sbjct: 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFL 42
|
Length = 407 |
| >gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
+V ++G GI GL +A L +AG+ V L E D
Sbjct: 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37
|
Length = 375 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV---DLDLGFMVFNR 58
RVA+IGAG +GL A VLA+ GV V +Y++ +GG +TF G+ LD + R
Sbjct: 329 RVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG---LLTF-GIPAFKLDKSLLARRR 384
Query: 59 VTYPNMMEFFESLGVDMEM 77
E F ++G++ E+
Sbjct: 385 -------EIFSAMGIEFEL 396
|
Length = 654 |
| >gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYE 30
M+V + G GI GL A L + G+EVV++E
Sbjct: 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFE 30
|
Length = 413 |
| >gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMV 55
++GAG+SG V A V A+ G V++ EK +++GG+A +D D G +V
Sbjct: 6 IVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA----YDEADDQTGILV 52
|
Length = 374 |
| >gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V ++GAG SGL +AY LAK G++V + E+ GG
Sbjct: 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254 |
| >gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG------GHAK-TVTFDGVDLDL--- 51
V VIG G +GL++A AK G V+L +K LG G + VT + V+ D
Sbjct: 2 DVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLGRKILISGGGRCNVT-NSVEPDEFLS 60
Query: 52 ------GFM--VFNRVTYPNMMEFFESLGVD 74
F+ +R T + + FFE LGV
Sbjct: 61 RYPGNPHFLKSALSRFTPWDFIAFFEELGVP 91
|
Length = 405 |
| >gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG 46
V VIG+G GL +A K G++VV+ EK+ GG T F G
Sbjct: 12 VLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG---TTAFSG 52
|
Length = 574 |
| >gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31
M++A+IGAGI GL +A +L + G EV ++EK
Sbjct: 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31
|
Length = 373 |
| >gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36
V +IG G +GL++A AKAG V+L +K LG
Sbjct: 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39
|
Length = 408 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Query: 575 RNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVL 634
I+ YDL N+L S L +++ ++ V KGQ+VL
Sbjct: 6 DRIAPKYDLLNDLLSFGLHR-------LWRRR--------------AVKLIGVFKGQKVL 44
Query: 635 EIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVK 673
++ CG G LAIE+ K K TG+ S E L+ A+ K +
Sbjct: 45 DVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLY--EKDDYLGGHA 39
V V+GAG++GLV+A LA AG V+L E + LGG A
Sbjct: 7 VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45
|
Length = 549 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV---DLDLGFMVFNR 58
+VAVIGAG +GL A +LA+AGV+V ++++ +GG +TF G+ LD + R
Sbjct: 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG---MLTF-GIPPFKLDKTVLSQRR 367
Query: 59 VTYPNMMEFF---ESLGVDMEMSDMS 81
+ M F +G D+ SD++
Sbjct: 368 EIFTAMGIDFHLNCEIGRDITFSDLT 393
|
Length = 639 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35
RV V+G G GL A LAK G +V + E+ D L
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRL 34
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32
M++ VIG G GLV+ LA+ G EVV + D
Sbjct: 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDID 32
|
Length = 414 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658
+E A +S G VLEIG G G L +++R + T I
Sbjct: 23 VEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAI 58
|
Length = 259 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+VAV+G+G +GL +A L +AG V ++E++D GG
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI--------TLSEEQLKYAEMKV 672
++E A V +G VLEIG G G L ++KR K T I L + Y +++
Sbjct: 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDRRLAERLRKLLSLYENLEI 79
Query: 673 KEAGLQDLIRLYLCDYRQLAK 693
E D +++ L ++ + K
Sbjct: 80 IE---GDALKVDLNEFPKQLK 97
|
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQ 678
LL+ G +VL++GCG+G L + KR+ + T + ++ L+ A + GL
Sbjct: 22 LLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL- 80
Query: 679 DLIRLYLCDYRQLAKANKYDRIIS 702
+ ++ D + K+D IIS
Sbjct: 81 ENGEVFWSDLYSAVEPGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYE--KDDYLGGHAKTVTFDGVDLDLGF 53
+V V+GAG+SGL A L K G +V+L + ++D L + + G++L LG
Sbjct: 7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGE 60
|
Length = 450 |
| >gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V VIG GI+G A A G++V L EK D G
Sbjct: 15 VIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49
|
Length = 532 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD---YLGGHAKTVTFDGVDLDLGFMVFNR 58
V +IG G +GL +A LA+ G++V L E++ Y G V L +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 59 VTYPNMMEFFESLGVDMEMSD 79
E ++ GV++ +
Sbjct: 61 ----LPEEVYKEFGVEVLLGT 77
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWG-TLAI--EIVKRTGCKYTGITLSEEQLKYAEMKVKE 674
V+ +++ + G VLEIG G G A+ +V R I EE + A ++
Sbjct: 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRV----VSIERIEELAEQARRNLET 116
Query: 675 AGLQDLIRLYLCDYRQ-LAKANKYDRII 701
G ++ + + D + + YDRII
Sbjct: 117 LGYEN-VTVRHGDGSKGWPEEAPYDRII 143
|
Length = 209 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 35/174 (20%)
Query: 620 LLIEKARVSKGQ---EVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEA 675
LL+E A Q +L++G G G +AI + K + + +S + L A +
Sbjct: 98 LLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN 157
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRIIS----------CEMIEAVGHEFMEEFFGCCESLL 725
GL ++ + + L K+D I+S + E V +E + G
Sbjct: 158 GLVRVLVVQSDLFEPLRG--KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVG------ 209
Query: 726 AEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779
DGL V + I + + PGG L +T +V +
Sbjct: 210 GGDGLEVYRRI-------------LGEAPDILKPGGVLILEIGLTQGEAVKALF 250
|
Length = 280 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
+VAVIGAG+ G A V A AG +VVL +
Sbjct: 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36
|
Length = 307 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35
+ ++G G GL A V A G +V + E+ D +
Sbjct: 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208
|
Length = 454 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35
RV V+G G GL A LAK G EV + E+ D L
Sbjct: 144 RVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 4 AVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG------GHAK-TVTFDGVDLDL----- 51
+IG G +GL++A A+ G+ V+L EK+ +G G + +T +
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYP 60
Query: 52 ---GFM--VFNRVTYPNMMEFFESLGVD 74
F+ +R + ++++FFESLG++
Sbjct: 61 RNGKFLRSALSRFSNKDLIDFFESLGLE 88
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400 |
| >gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.002
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLY 684
A+ +G + ++IGCG G L+ E + R G TG+ ++ +K A + + I Y
Sbjct: 127 AKPFEGLKFIDIGCGGGLLS-EPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIE-Y 184
Query: 685 LCDYRQL--AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA 726
LC + + K+D ++S E+IE V + EF C+SL A
Sbjct: 185 LCTTAEKLADEGRKFDAVLSLEVIEHVANP--AEF---CKSLSA 223
|
Length = 322 |
| >gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36
V+GAG++G V+A V+A+AG++V++ E+ D G
Sbjct: 10 VVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41
|
Length = 429 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQ 678
L + K R+ G + +IG G G++ IE + + I + E L E ++
Sbjct: 10 LTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLR----- 64
Query: 679 DLIRLYLCDYRQLAKANKYDRIISCEMIEAV----GHEFMEEFFGCCESLLAEDGLLVLQ 734
R + + + +AV ++E E L G +VL
Sbjct: 65 ---RFGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEILEAVERRLRPGGRIVLN 121
Query: 735 FI 736
I
Sbjct: 122 AI 123
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
MR+AVIG G GL +A LA+ G +VV + +
Sbjct: 1 MRIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ 33
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+VA++G+G +GL +AY LA G EV +YE GG
Sbjct: 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
|
Length = 604 |
| >gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 1 MRVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGH 38
+IG GI GL +A L + G + + EK+ H
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH 42
|
Length = 393 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG 676
++ +I KA + + +L++GCG G + + TG+ +SE L A E G
Sbjct: 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAH----EKG 167
Query: 677 LQDLIRLYLCDYRQLAKAN---KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
L D LY+ + + ++D I++ +++ +G +E F LLA GL
Sbjct: 168 LYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAF 223
Query: 734 QFISIPDE 741
++PD+
Sbjct: 224 SVETLPDD 231
|
Length = 287 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 613 AQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV 672
A MR+ L KG+ VL+ GCG G L+IE+ KR G + +SE+ ++ A +
Sbjct: 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRA 97
Query: 673 KEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706
+ + + + D L ++D ++ +++
Sbjct: 98 QGRDVAGNVEFEVNDLLSL--CGEFDIVVCMDVL 129
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32
M++AVIG G GL A +LA G +V + D
Sbjct: 1 MKIAVIGLGYVGLPLAALLADLGHDVTGVDID 32
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 25/120 (20%)
Query: 621 LIEKARVSKGQEVLEIGC--GWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
L + +V GQ VL G G GT A++I K G TG+ S AE+ V+ G
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVC-STRN---AEL-VRSLGAD 189
Query: 679 DLIRLYLCDYRQ------LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732
++I DY A KYD I +AVG+ + L G V
Sbjct: 190 EVI-----DYTTEDFVALTAGGEKYDVI-----FDAVGNS-PFSLYRAS-LALKPGGRYV 237
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYE 30
+ VIGAG++G +A+ +AK GV V+LYE
Sbjct: 6 INVIGAGLAGSEAAWQIAKRGVPVILYE 33
|
Length = 439 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 620 LLIEKA--RVSKG-QEVLEIGCGWGTLAIEIVK-RTGCKYTGITLSEEQLKYAEMKVKEA 675
L+E A R+ KG VL++G G G +A+ + K R + T + +S E L A
Sbjct: 75 ELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL 134
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRIIS 702
GL D + D+ + K+D I+S
Sbjct: 135 GL-DNVEFLQSDWFEPLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGF 53
++GAG+SG+V A +LA+ V++ EK +++GG+ +D VD + F
Sbjct: 6 IVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC----YDEVDETILF 50
|
This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 842 | |||
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 100.0 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 100.0 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 100.0 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 100.0 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 100.0 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 100.0 | |
| PLN02268 | 435 | probable polyamine oxidase | 100.0 | |
| PLN02612 | 567 | phytoene desaturase | 100.0 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 100.0 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 100.0 | |
| PLN02487 | 569 | zeta-carotene desaturase | 100.0 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 100.0 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 99.98 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 99.97 | |
| PLN02568 | 539 | polyamine oxidase | 99.97 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 99.97 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 99.97 | |
| PLN03000 | 881 | amine oxidase | 99.97 | |
| PLN02676 | 487 | polyamine oxidase | 99.96 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 99.96 | |
| TIGR03467 | 419 | HpnE squalene-associated FAD-dependent desaturase. | 99.96 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 99.96 | |
| PLN02976 | 1713 | amine oxidase | 99.95 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 99.95 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.95 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 99.95 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 99.94 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 99.94 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.94 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 99.93 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 99.93 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 99.87 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.87 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.85 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.83 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.81 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.8 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.8 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.8 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 99.78 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.75 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.73 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.73 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.72 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.72 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.7 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.68 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 99.68 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.67 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 99.67 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 99.66 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.65 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.65 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.65 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.65 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.64 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.64 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.63 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.63 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.62 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.6 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.6 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.59 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 99.59 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 99.59 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.58 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.58 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.58 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.57 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.57 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.56 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.55 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.55 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.54 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.53 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.52 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 99.52 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.52 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.52 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.51 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.51 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.51 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.51 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.5 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.5 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 99.49 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.49 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.49 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.49 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.49 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.49 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.48 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 99.48 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 99.47 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.47 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.47 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.47 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 99.47 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.46 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.46 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.46 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.45 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.45 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 99.45 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.44 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.44 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.43 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.42 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.42 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 99.42 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.42 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.42 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.41 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.4 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.39 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.39 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.38 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.37 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.35 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.35 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.35 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.33 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.32 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.31 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.31 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.31 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.31 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.31 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.3 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.3 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.29 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.29 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.29 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 99.27 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.25 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.24 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.22 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.22 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.22 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.2 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 99.19 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.19 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.19 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.19 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.18 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.17 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.16 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.16 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.16 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.15 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.15 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 99.14 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.14 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.13 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.12 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.11 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.11 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.1 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 99.1 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.08 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.08 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.07 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 99.06 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.06 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.06 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 99.06 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.03 | |
| PLN02476 | 278 | O-methyltransferase | 99.03 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.03 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.03 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.02 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.02 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 99.02 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.02 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.02 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 99.01 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.0 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.0 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.0 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 99.0 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.99 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.99 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.99 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.99 | |
| PLN02366 | 308 | spermidine synthase | 98.99 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.98 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.98 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.97 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.97 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.97 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.96 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.96 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.96 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.96 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.95 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.95 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.95 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.95 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.95 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.94 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.94 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.94 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.93 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.93 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.93 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.93 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.93 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.93 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.92 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.92 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.91 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.91 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.9 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.9 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 98.9 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.89 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.89 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.88 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.87 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.87 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.86 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 98.86 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.85 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.85 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.84 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.84 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.84 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.84 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.83 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.83 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.83 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.83 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.83 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.83 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.83 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.82 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.82 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.82 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.82 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.81 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.81 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.81 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.81 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.8 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.8 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.8 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.8 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.79 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.79 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.79 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.79 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.79 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.77 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.77 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.77 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.76 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.76 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.75 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.75 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.75 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.75 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.75 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.74 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.74 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.73 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.73 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.72 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.72 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.72 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.71 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.71 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.71 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.7 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 98.7 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.68 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.68 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.66 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.66 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.65 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.65 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 98.64 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 98.64 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.64 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.63 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.63 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.63 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.63 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.62 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.62 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.6 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 98.6 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.6 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.6 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.6 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.6 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.6 | |
| COG4716 | 587 | Myosin-crossreactive antigen [Function unknown] | 98.59 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 98.59 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.59 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.59 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.59 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.59 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.58 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.58 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.57 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.57 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.57 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.57 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.56 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.56 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.55 | |
| PLN02823 | 336 | spermine synthase | 98.55 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.55 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.55 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.55 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.55 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.53 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.53 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.53 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.53 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.53 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.52 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.5 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.5 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.49 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.49 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.48 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.48 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.46 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.46 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.46 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.46 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.46 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.45 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.45 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.44 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.43 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.43 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.43 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.43 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.42 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.42 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.42 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.42 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.42 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.42 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.41 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.41 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.4 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.4 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.4 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.4 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.39 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.39 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.39 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.38 | |
| PLN02985 | 514 | squalene monooxygenase | 98.38 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.38 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 98.38 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.37 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 98.37 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.37 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.37 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.36 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.36 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.35 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.35 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.35 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 98.35 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.34 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.34 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.34 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.34 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.34 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.34 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.33 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.32 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 98.32 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.31 | |
| PLN02507 | 499 | glutathione reductase | 98.31 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.31 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.3 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 98.3 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.29 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.29 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.29 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 98.28 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.28 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.28 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.28 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.28 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.28 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.28 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.27 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.27 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.27 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.27 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.26 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 98.26 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.25 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 98.24 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.23 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.21 | |
| KOG1439 | 440 | consensus RAB proteins geranylgeranyltransferase c | 98.19 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.17 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.16 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.16 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.15 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.14 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 98.13 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.12 | |
| PF07156 | 368 | Prenylcys_lyase: Prenylcysteine lyase; InterPro: I | 98.11 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.11 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.1 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.1 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.09 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.09 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 98.07 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 98.06 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.05 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.05 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.04 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 98.04 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 98.02 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.01 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.01 | |
| COG5044 | 434 | MRS6 RAB proteins geranylgeranyltransferase compon | 98.0 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.99 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 97.98 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.98 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.96 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 97.95 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.95 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.91 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 97.9 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.9 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.89 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.89 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.88 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.86 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.86 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.85 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.85 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.85 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.83 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.82 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.82 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.82 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.81 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.81 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.81 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.8 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.8 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.78 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.78 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.78 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 97.78 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.78 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.77 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.77 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.76 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.76 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.76 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.74 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.73 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.72 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.72 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.71 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.7 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.69 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.67 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 97.67 |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=489.19 Aligned_cols=274 Identities=42% Similarity=0.762 Sum_probs=262.9
Q ss_pred hhhcccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCch
Q 035870 562 RHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWG 641 (842)
Q Consensus 562 ~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G 641 (842)
.+..++++.+.+.++|+.|||++|+||++|+|++|+|||+||+.++.+|++||.+|++.++++++++||++|||||||||
T Consensus 5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred ccccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 34456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHH
Q 035870 642 TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCC 721 (842)
Q Consensus 642 ~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~ 721 (842)
.+++++|++++++|+|+|+|++|.+.++++++..|++++|+++..|++++. ++||.|||++|+||++.++++.+|+.+
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 569999999999999999999999999
Q ss_pred HhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHH
Q 035870 722 ESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKN 801 (842)
Q Consensus 722 ~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~ 801 (842)
+++|+|||++++++++.++..+. ....||.+||||||.+|++.++.+...+ +||.|.+.+.++.||++|+.+|+++
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~-~~~~v~~~~~~~~hYa~Tl~~W~~~ 238 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASE-AGFVVLDVESLRPHYARTLRLWRER 238 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHh-cCcEEehHhhhcHHHHHHHHHHHHH
Confidence 99999999999999999887654 5688999999999999999999988776 8999999999999999999999999
Q ss_pred HHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 802 FMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 802 ~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
|+++++++.++ ++|+|.|||++||++||++|+.|.++++|
T Consensus 239 f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q 278 (283)
T COG2230 239 FEANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQ 278 (283)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence 99999999999 99999999999999999999999999998
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-60 Score=510.57 Aligned_cols=333 Identities=31% Similarity=0.582 Sum_probs=291.5
Q ss_pred cceEEEEeChHHHHHHhhcCCchhhHHHHcCceeeccChhhHHHHHHHHHHccCCcchhhhhhhccCCCcchhhhhhhhh
Q 035870 477 LKTVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQKRGWWSPMLFTAGIAS 556 (842)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (842)
++++|+|+||+++.+++.+|+||||||||+|+|+++| |.++++.++.|...... . ..+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~~~~-~------~~~~~~-------- 95 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLDEKL-P------HHLKDT-------- 95 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccchhhh-h------hhHHHH--------
Confidence 5789999999999999999999999999999999985 99999988887521100 0 000000
Q ss_pred HHHHHhhhcccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEe
Q 035870 557 AKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636 (842)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDi 636 (842)
......+..+.|+++++++||++|||++|+||++|+|++|+|||+||.. .++|++||.++++.+++++.++++++||||
T Consensus 96 ~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDI 174 (383)
T PRK11705 96 LRILRARLFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDI 174 (383)
T ss_pred HHHHHHHHhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 0011122456789999999999999999999999999999999999964 479999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHH
Q 035870 637 GCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEE 716 (842)
Q Consensus 637 GcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~ 716 (842)
|||||.++..+++.++++|+|+|+|++|++.|+++++ ++ ++++...|+.+++ ++||.|+|+++++|++.++++.
T Consensus 175 GcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l~--~~fD~Ivs~~~~ehvg~~~~~~ 248 (383)
T PRK11705 175 GCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDLN--GQFDRIVSVGMFEHVGPKNYRT 248 (383)
T ss_pred CCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhcC--CCCCEEEEeCchhhCChHHHHH
Confidence 9999999999998888999999999999999999884 33 4889999998874 7899999999999999888899
Q ss_pred HHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHH
Q 035870 717 FFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLR 796 (842)
Q Consensus 717 ~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~ 796 (842)
+++++.++|||||++++++++.+... .....|+.+|+||++.+|+++++.+..+ .||.+.++++++.||++|+.
T Consensus 249 ~l~~i~r~LkpGG~lvl~~i~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~--~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 249 YFEVVRRCLKPDGLFLLHTIGSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASE--GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHHHHHcCCCcEEEEEEccCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHH--CCcEEEEEecChhhHHHHHH
Confidence 99999999999999999988765431 2346799999999999999999877644 58999999999999999999
Q ss_pred HHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 797 CWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 797 ~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+|+++|+++++++.+ +|+++|.|||+|||++|+++|+.|.++++|
T Consensus 323 ~W~~~f~~~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q 367 (383)
T PRK11705 323 AWHENFEAAWPELAD-NYSERFYRMWRYYLLSCAGAFRARDIQLWQ 367 (383)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 999999999999987 699999999999999999999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=494.70 Aligned_cols=271 Identities=51% Similarity=0.883 Sum_probs=226.9
Q ss_pred CchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHH
Q 035870 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEI 647 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l 647 (842)
+++++++++|++|||++|+||++|||++|+|||++|+++.++|++||.+|++.++++++++||++|||||||||++++++
T Consensus 1 ~~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~ 80 (273)
T PF02353_consen 1 HSKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYA 80 (273)
T ss_dssp --S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH
T ss_pred CccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 648 VKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 648 a~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
|+++|++|+|+++|++|.+++++++++.|+++++++.++|+++++ .+||.|+|++|+||++.++++.+|++++++|||
T Consensus 81 a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 81 AERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred HHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999988 599999999999999999999999999999999
Q ss_pred CcEEEEEeecCCCcccccccC-ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhH
Q 035870 728 DGLLVLQFISIPDERYNEYRL-SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806 (842)
Q Consensus 728 gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 806 (842)
||+++++.++.+...+..... ..+|+++|||||+.+|+++++...+.+ .||+|.++++++.||++|+++|+++|.+++
T Consensus 159 gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~-~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~ 237 (273)
T PF02353_consen 159 GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED-AGLEVEDVENLGRHYARTLRAWRENFDANR 237 (273)
T ss_dssp TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH-TT-EEEEEEE-HHHHHHHHHHHHHHHHHTH
T ss_pred CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc-CCEEEEEEEEcCcCHHHHHHHHHHHHHHHH
Confidence 999999999998876655443 349999999999999999999987776 899999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 807 SKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 807 ~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+++.++ |+++|+|||++||++|+++|+.|.++++|
T Consensus 238 ~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~~~~Q 272 (273)
T PF02353_consen 238 EEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSIDVFQ 272 (273)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEe
Confidence 999999 99999999999999999999999999998
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=422.98 Aligned_cols=409 Identities=40% Similarity=0.687 Sum_probs=374.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee----CCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF----DGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~----~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||+|+|||||||.|+++ ++||+||+.+++||+++|... +|+.+|.|.++++...||++.+|++++|++..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence 5899999999999999999987 899999999999999999953 57899999999998899999999999999999
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
..++++.+..+.| .++|.+..++..++.+..+.+.+.++.+++++++|........ + .....+.++++|+++++
T Consensus 88 as~Msf~v~~d~g-glEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~----d-~~~~~~~tl~~~L~~~~ 161 (447)
T COG2907 88 ASFMSFSVSLDMG-GLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPS----D-NAGQGDTTLAQYLKQRN 161 (447)
T ss_pred ccceeEEEEecCC-ceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccch----h-hhcCCCccHHHHHHhcC
Confidence 9999999987764 4889887888889999999999999999999999876422111 1 11226889999999999
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCC
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~ 236 (842)
++..|.+.++.|+.+++|+++..+++.+|+..++.++.++++..+.+++.|+++.||+..+++.|+..+ +++|.+++
T Consensus 162 f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~ 238 (447)
T COG2907 162 FGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRT 238 (447)
T ss_pred ccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccc---cceeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 67899999
Q ss_pred CeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeeceEEEecCCCCcCCCCCCcce
Q 035870 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFLHRDKRFMPQNPAAWSA 316 (842)
Q Consensus 237 ~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~p~~~~~~~~ 316 (842)
+|.+|.+-.+++.|+..+|++-.+|+||+|+.++++..+|++ +++++.+.+.++.|+.+..++|.|.+++|.+...|++
T Consensus 239 ~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~~lmPrR~~Awas 317 (447)
T COG2907 239 PVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAVLHTDASLMPRRLRAWAS 317 (447)
T ss_pred ceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecccccccccccccc
Confidence 999999999999999999999999999999999999999997 7889999999999999999999999999999999999
Q ss_pred eeeccc---CCCceEEEEEcccccCCCCCCCCeEEecC--CCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeE
Q 035870 317 WNFLES---FDSKVCLTYWLNVLQNLGETSLPFLVTLN--PDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIW 391 (842)
Q Consensus 317 ~~~~~~---~~~~~~v~~~~~~l~~l~~~~~~~~~~l~--~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 391 (842)
|+|... ......+++++|.++.+... .+.+++++ +..+|..++.+-.+.+|.|++.....+.++...++..+.|
T Consensus 318 wny~~~~~~e~~~~~lty~mN~lq~l~~~-~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~~avraqq~l~alqg~~~tw 396 (447)
T COG2907 318 WNYLGTVQWELCQGSLTYWMNRLQALISV-RDYFVTLNNRPWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTW 396 (447)
T ss_pred cceeccccccccCcceeccHHHhhcccCC-cceEEEecCCcccChHHhhHHhhcCCcCCCHHHHHHHHHHHhhhcCCCCC
Confidence 999976 33566889999999999988 99999999 6666777888999999999999999999999999999999
Q ss_pred EeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 392 FCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 392 ~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
|||.|.|.|+||+.+.+|..+|+.+ +.+++
T Consensus 397 fcgAy~g~GFHeDg~~aGl~va~~l-g~~w~ 426 (447)
T COG2907 397 FCGAYFGRGFHEDGLQAGLAVAEDL-GAPWE 426 (447)
T ss_pred cchhhhccccchhhhhhHHHHHHhc-CCccc
Confidence 9999999999999999999999997 55543
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=316.83 Aligned_cols=394 Identities=21% Similarity=0.328 Sum_probs=277.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|+|+|||||+|||+|||+|++++ .+|+|||+.+++||.++|+..+|+.+|.|+|.|... .+.+.++++++|++....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence 78999999999999999999999 999999999999999999999999999999999654 488889999999998876
Q ss_pred c--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 79 D--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 79 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
. ......+.+|+.+.++... +..+...... ++. ...+ ...++... ......++.++++|++++
T Consensus 80 ~~~~~~~~i~~~gkl~p~P~~~-i~~ip~~~~~--~~~------~~~~---~~~~~~~~--~~~~~~~d~sv~~f~r~~- 144 (444)
T COG1232 80 WNSTARKYIYYDGKLHPIPTPT-ILGIPLLLLS--SEA------GLAR---ALQEFIRP--KSWEPKQDISVGEFIRRR- 144 (444)
T ss_pred cCCcccceEeeCCcEEECCccc-eeecCCcccc--chh------HHHH---HHHhhhcc--cCCCCCCCcCHHHHHHHH-
Confidence 2 2333456778877776543 2222111110 000 0000 01111111 112334799999999999
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHH-hhccc--cc---------cCCCCceEEecCChhHHHHHHHHH
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFC-RNHHL--LQ---------LFGRPQWLTVRWRSHSYVNKVRKQ 224 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~--~~---------~~~~~~~~~~~gG~~~l~~~L~~~ 224 (842)
+++++.+.++.|++.++|+.+.+++|...+....... ...+. .+ ....+.+.+++||+++++++|++.
T Consensus 145 fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~ 224 (444)
T COG1232 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEK 224 (444)
T ss_pred HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHH
Confidence 8999999999999999999999999654222211111 11110 00 112246889999999999999999
Q ss_pred hhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecC
Q 035870 225 LESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRD 303 (842)
Q Consensus 225 l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~ 303 (842)
++. +|+++++|++|.+++.++.+++.+|+.+.||.||+|+|++.+..++++ ....+.+.++.+.+ ..+++.++
T Consensus 225 l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~ 298 (444)
T COG1232 225 LEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKELQYTSVVTVVVGLD 298 (444)
T ss_pred hhh---ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhhccccceEEEEEEec
Confidence 954 499999999999998888888889999999999999999999999987 34466677788866 56667776
Q ss_pred CC---CcCCC--------C-----CCcceeeecc-cCCCceEEEEEcccc--cCCC--------CCCCCeEEecCC-CCC
Q 035870 304 KR---FMPQN--------P-----AAWSAWNFLE-SFDSKVCLTYWLNVL--QNLG--------ETSLPFLVTLNP-DHV 355 (842)
Q Consensus 304 ~~---~~p~~--------~-----~~~~~~~~~~-~~~~~~~v~~~~~~l--~~l~--------~~~~~~~~~l~~-~~~ 355 (842)
.. ..|++ . ..|.+-.++. .|.+...+....... +.+. +...+.+..+.+ ...
T Consensus 299 ~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~ 378 (444)
T COG1232 299 EKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD 378 (444)
T ss_pred cccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc
Confidence 63 22222 1 2343322222 233555555444321 1111 111122222332 223
Q ss_pred Cc-ceeEEEEcCCCCCCHHHHHHHHhhhhhcC--CCCeEEecccc-CCCCCchhHhHHHHHHHHhc
Q 035870 356 PE-HTLLKWSTGHPVPSVAASKASLELDHIQG--KRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 356 ~~-~~~~~w~~~~p~~~~~~~~~~~~~~~~~~--~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~Il 417 (842)
|. ..+.+|.+++|+|.+++.+....+....+ .+||..+|.|. |.|+ .+|+.+|..+|++|+
T Consensus 379 ~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~-~d~I~~g~~aa~~l~ 443 (444)
T COG1232 379 PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGL-PDCIAAGKEAAEQLL 443 (444)
T ss_pred hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCc-hHHHHHHHHHHHHhh
Confidence 33 36669999999999999999988887333 48999999965 6688 999999999999985
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=328.63 Aligned_cols=395 Identities=19% Similarity=0.245 Sum_probs=267.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
+||+|||||+|||+||++|+++ |++|+|||+++++||+++|...+|+.+|.|+|+++. .++++.++++++|+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~-~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE-RKKSAPDLVKDLGLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCcccccc-CChHHHHHHHHcCCCcc
Confidence 6899999999999999999999 999999999999999999999999999999999975 67889999999999765
Q ss_pred ccc--ceeeEeccC-CCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHH
Q 035870 77 MSD--MSFSVSLEK-GHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVN 153 (842)
Q Consensus 77 ~~~--~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 153 (842)
... ......+.+ |+.+.++. .+...... ..+. +...+... ....... ....++|+.+|++
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~~~--~~~~~~~~----------~~~~~~~-~~~~d~s~~e~l~ 144 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLMPVPT--KIAPFVKT--GLFS--LGGKLRAG----------MDFIRPA-SPGKDESVEEFVR 144 (462)
T ss_pred cccCCCCceEEEECCCceecCCC--ChHHHhcC--CCCC--chhhHHhh----------hhhccCC-CCCCCcCHHHHHH
Confidence 432 111222222 44332221 11000000 0000 00001000 0111111 1124699999999
Q ss_pred hcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHh------------hc---cc---ccc--CCCCceEEecCC
Q 035870 154 SRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCR------------NH---HL---LQL--FGRPQWLTVRWR 213 (842)
Q Consensus 154 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~---~~---~~~--~~~~~~~~~~gG 213 (842)
++ +++.+.+.++.|++.++|+.++++++...+...+.... .. .. ... ..+..+..++||
T Consensus 145 ~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 223 (462)
T TIGR00562 145 RR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATG 223 (462)
T ss_pred Hh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchh
Confidence 87 78888899999999999999999884332221111110 00 00 000 011237889999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
+++|++.|++.+. .++|+++++|++|..++++|.|++.+|+++.||+||+|+|++.+..++++ .++...+.+.+++|
T Consensus 224 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~~~~~l~~l~~ 300 (462)
T TIGR00562 224 LETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNSASSHLDKIHS 300 (462)
T ss_pred HHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHHHHHHHhcCCC
Confidence 9999999999995 27899999999999999999999988888999999999999999999976 56677888999999
Q ss_pred ee-ceEEEecCCCCcCC-----------CCC-Ccceeeec-----c-cCCCceEEEEEccccc--CC---CC-----CCC
Q 035870 294 VY-SDIFLHRDKRFMPQ-----------NPA-AWSAWNFL-----E-SFDSKVCLTYWLNVLQ--NL---GE-----TSL 344 (842)
Q Consensus 294 ~~-~~v~l~~~~~~~p~-----------~~~-~~~~~~~~-----~-~~~~~~~v~~~~~~l~--~l---~~-----~~~ 344 (842)
.+ .++.+.|+.+.++. ... ....+.+. . .+.+...++.++.... .+ .+ ...
T Consensus 301 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~ 380 (462)
T TIGR00562 301 PPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVL 380 (462)
T ss_pred CceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHH
Confidence 99 46778876543322 110 00112221 1 2344555655554311 11 11 011
Q ss_pred CeEEecC-CCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEecccc-CCCCCchhHhHHHHHHHHhcC
Q 035870 345 PFLVTLN-PDHVPEH-TLLKWSTGHPVPSVAASKASLELDH--IQGKRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 345 ~~~~~l~-~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~Il~ 418 (842)
+.+..+. ....|.. .+++|.+++|.|.+++......+.+ ....+||++||+|+ |.|+ ++|+.||.++|++|+.
T Consensus 381 ~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i-~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 381 RDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGI-PDCIDQGKAAASDVLT 458 (462)
T ss_pred HHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcH-HHHHHHHHHHHHHHHH
Confidence 2222222 2222444 6679999999999999888777764 23357999999966 6788 9999999999999965
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=327.95 Aligned_cols=402 Identities=17% Similarity=0.260 Sum_probs=263.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC------CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA------GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~------G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
|+|+|||||+|||+||++|++. |++|+|||+++++||+++|.+.+|+.+|.|+|++.. .++++.+|++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~-~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA-RNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc-CCHHHHHHHHHcCCc
Confidence 5799999999999999999986 479999999999999999999999999999999964 678899999999998
Q ss_pred cccccc--eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHH
Q 035870 75 MEMSDM--SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFV 152 (842)
Q Consensus 75 ~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (842)
...... .....+.++....++.. .+..+.......+........ ..++ ...+.. .......+++|+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~p~~~~~~~~~~~~~~~-~~~~---~~~~~~---~~~~~~~~~~sv~~~l 152 (463)
T PRK12416 81 EEMVYNETGISYIYSDNTLHPIPSD-TIFGIPMSVESLFSSTLVSTK-GKIV---ALKDFI---TKNKEFTKDTSLALFL 152 (463)
T ss_pred cceecCCCCceEEEECCeEEECCCC-CeecCCCChHHhhcCCcCCHH-HHHH---hhhhhc---cCCCCCCCCCCHHHHH
Confidence 665321 12222233333332221 000000000000000000000 0000 001111 1111123689999999
Q ss_pred HhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHH-HHHHHhhcc-----------ccccCCCCceEEecCChhHHHHH
Q 035870 153 NSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFS-VLSFCRNHH-----------LLQLFGRPQWLTVRWRSHSYVNK 220 (842)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~gG~~~l~~~ 220 (842)
+++ +++++.+.++.|++.++|+.++++++..+... +..+....+ .........+++++||+++|+++
T Consensus 153 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 231 (463)
T PRK12416 153 ESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDR 231 (463)
T ss_pred HHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHH
Confidence 987 78888999999999999999999885433222 122211111 00112234578899999999999
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEE
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIF 299 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~ 299 (842)
|++.+++ ++|++|++|++|+.++++|.|++.+|+++.||+||+|+|++.+.+++.++ ...+.+.++.+.+ .+++
T Consensus 232 l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~---~l~~~~~~~~~~~~~~v~ 306 (463)
T PRK12416 232 LEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQSN---ELNEQFHTFKNSSLISIY 306 (463)
T ss_pred HHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCCc---chhHHHhcCCCCceEEEE
Confidence 9999963 68999999999999999999999888889999999999999999988652 3344567777777 5778
Q ss_pred EecCCCCc--CCCCC---------------Ccceeeecc-cCCCceEEEEEccc-------ccCCCCC-----CCCeEEe
Q 035870 300 LHRDKRFM--PQNPA---------------AWSAWNFLE-SFDSKVCLTYWLNV-------LQNLGET-----SLPFLVT 349 (842)
Q Consensus 300 l~~~~~~~--p~~~~---------------~~~~~~~~~-~~~~~~~v~~~~~~-------l~~l~~~-----~~~~~~~ 349 (842)
+.++.+.+ |.... .|.+..+.. .++....++.+++. +..+.+. ..+.+..
T Consensus 307 l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~ 386 (463)
T PRK12416 307 LGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEK 386 (463)
T ss_pred EEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHH
Confidence 88885422 32110 121111222 23445555555431 1111111 1112221
Q ss_pred -cCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEeccc-cCCCCCchhHhHHHHHHHHhcC
Q 035870 350 -LNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH--IQGKRGIWFCGAY-QGYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 350 -l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG~~-~g~G~~e~A~~SG~~aA~~Il~ 418 (842)
++....|.. .+.+|..+.|.|..++......+.+ ..+.++|++||+| .|.|+ ++|+.||+++|++|+.
T Consensus 387 ~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i-~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 387 SLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGI-GACIGNGKNTANEIIA 459 (463)
T ss_pred HhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccH-HHHHHHHHHHHHHHHH
Confidence 233333433 6679999999999988777766654 2345899999995 57787 9999999999999974
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=320.36 Aligned_cols=402 Identities=19% Similarity=0.265 Sum_probs=260.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|+|+|||||+|||+||+.|+++| ++|+|||+++++||+++|.+.+|+.+|.|+|++.. .++++.++++++|+.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA-RKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC-CcHHHHHHHHHcCCcccee
Confidence 78999999999999999999988 89999999999999999999999999999998854 6778999999999975533
Q ss_pred cc--eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 79 DM--SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 79 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.. .....+.+|+.+.++.. .+..........+...+..... .++. .... ........+++|+++|+.+.
T Consensus 80 ~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~---~~~~~~~~~~~s~~e~l~~~- 150 (451)
T PRK11883 80 ANTTGQSYIYVNGKLHPIPPG-TVMGIPTSIAPFLFAGLVSPIG-KLRA---AADL---RPPRWKPGQDQSVGAFFRRR- 150 (451)
T ss_pred cCCCCcceEEECCeEEECCCC-CeeccCCCchhhhcCCCCCHHH-HHHh---hCcc---cCCCCCCCCCcCHHHHHHHh-
Confidence 21 12233345554333221 0000000000000000000000 0000 0000 00111123678999999876
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHH-HHHHHhhcc---------cccc--CCCCceEEecCChhHHHHHHHHH
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFS-VLSFCRNHH---------LLQL--FGRPQWLTVRWRSHSYVNKVRKQ 224 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~---------~~~~--~~~~~~~~~~gG~~~l~~~L~~~ 224 (842)
+++.+.+.++.|++.++|++++++++...... +..+..... .... .....+++++||++.+++.|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~ 230 (451)
T PRK11883 151 FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEK 230 (451)
T ss_pred ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHh
Confidence 88889999999999999999999885432221 111111110 0000 12456789999999999999999
Q ss_pred hhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecC
Q 035870 225 LESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRD 303 (842)
Q Consensus 225 l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~ 303 (842)
++.. +|++|++|++|+.++++|.|++.+|+++.||+||+|+|+.++.+++.+ +...+++.+++|.+ .++++.++
T Consensus 231 l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~l~~~ 305 (451)
T PRK11883 231 LPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKTIPSTSVATVALAFP 305 (451)
T ss_pred CcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhCCCCCceEEEEEEec
Confidence 9533 899999999999999999999999989999999999999999998764 33467778888888 57888888
Q ss_pred CCCc--CCC---------CCCcce--ee---ecc-cCCCceEEEEEcccc-----cCCCC-----CCCCeEEec-CCCCC
Q 035870 304 KRFM--PQN---------PAAWSA--WN---FLE-SFDSKVCLTYWLNVL-----QNLGE-----TSLPFLVTL-NPDHV 355 (842)
Q Consensus 304 ~~~~--p~~---------~~~~~~--~~---~~~-~~~~~~~v~~~~~~l-----~~l~~-----~~~~~~~~l-~~~~~ 355 (842)
.++. +.. ...+.. |. +.. .+++...+....... ....+ .+.+.+..+ +....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~ 385 (451)
T PRK11883 306 ESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGD 385 (451)
T ss_pred cccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCC
Confidence 7631 111 000001 11 111 133444444333211 11110 011122222 22222
Q ss_pred Ccc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEecccc-CCCCCchhHhHHHHHHHHhcC
Q 035870 356 PEH-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 356 ~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~Il~ 418 (842)
+.. .+.+|.++.|.+.+++......+.. ....++||+||+|+ +.|+ ++|+.||+++|++|+.
T Consensus 386 ~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i-~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 386 PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGL-PDCIAQAKRAAARLLA 450 (451)
T ss_pred ceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccH-HHHHHHHHHHHHHHHh
Confidence 333 6669999999999888665555544 22257999999976 5666 9999999999999975
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=318.77 Aligned_cols=397 Identities=20% Similarity=0.232 Sum_probs=262.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
+||+|||||+|||+||++|+++ |++|+|||+++++||+++|.+.+|+.+|.|+|++. ..++.+..++++ |+......
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~-~~~~~~~~l~~~-gl~~~~~~ 90 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQ-PSDPELTSAVDS-GLRDDLVF 90 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhc-cCcHHHHHHHHc-CChhheec
Confidence 5899999999999999999999 99999999999999999999999999999999996 467777788777 87655421
Q ss_pred ---ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 80 ---MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 80 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
......+.+|+.+.++. .+..++. ...++ ... .++.. ...+... ......+++|+++|++++
T Consensus 91 ~~~~~~~~~~~~g~~~~~p~--~~~~~~~--~~~~~-----~~~-~~~~~---~~~~~~~-~~~~~~~~~sv~~~l~~~- 155 (496)
T PLN02576 91 PDPQAPRYVVWNGKLRPLPS--NPIDLPT--FDLLS-----APG-KIRAG---LGAFGWK-RPPPPGREESVGEFVRRH- 155 (496)
T ss_pred CCCCceEEEEECCEEEEcCC--ChHHhcC--cCcCC-----hhH-HHHHh---HHHhhcc-CCCCCCCCCcHHHHHHHh-
Confidence 11122334555444332 1101100 00111 100 11110 0111100 011113689999999987
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh-----------cccc--------------ccCCCCceEEec
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN-----------HHLL--------------QLFGRPQWLTVR 211 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~--------------~~~~~~~~~~~~ 211 (842)
+++...+.++.|++.++|+.++++++...+...+..+.. .... ........+.++
T Consensus 156 ~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (496)
T PLN02576 156 LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFR 235 (496)
T ss_pred cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEecc
Confidence 899999999999999999999999854333222111100 0000 001223467889
Q ss_pred CChhHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCc-EEEEeC--CCc-EEeCCEEEEccChHHHHHhhcCCCChHHHH
Q 035870 212 WRSHSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKG-CTIVCG--DGS-REFYNSCVMALHAPDALKILGNQATFDETR 286 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~-v~V~~~--~G~-~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~ 286 (842)
||+++|+++|++.+ + ++|++|++|++|++.+++ |.|++. +|+ ++.||+||+|+|+.++..++++ .++...+
T Consensus 236 gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-~~~~~~~ 311 (496)
T PLN02576 236 GGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-KSPAAAD 311 (496)
T ss_pred chHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcc-cCHHHHH
Confidence 99999999999988 4 689999999999998886 655543 553 6999999999999999999986 5667788
Q ss_pred hccccceee-ceEEEecCCCCcCCC--------CC---------------Ccceeeecc-cCCCceEEEEEcccc-----
Q 035870 287 ILGAFQYVY-SDIFLHRDKRFMPQN--------PA---------------AWSAWNFLE-SFDSKVCLTYWLNVL----- 336 (842)
Q Consensus 287 ~l~~~~~~~-~~v~l~~~~~~~p~~--------~~---------------~~~~~~~~~-~~~~~~~v~~~~~~l----- 336 (842)
.+.++.|.+ .++.+.|+.+.++.+ .. .|.+..++. .+++...++.++...
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~ 391 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGI 391 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCccc
Confidence 899999998 467788877655431 10 111111211 134445555555421
Q ss_pred cCCCC-----CCCCeEEecCC-CC--CCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCC--CCeEEecccc-CCCCCc
Q 035870 337 QNLGE-----TSLPFLVTLNP-DH--VPEH-TLLKWSTGHPVPSVAASKASLELDH-IQGK--RGIWFCGAYQ-GYGFHE 403 (842)
Q Consensus 337 ~~l~~-----~~~~~~~~l~~-~~--~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~--~~l~~aG~~~-g~G~~e 403 (842)
..+.+ .+.+.+..+.+ .. .|.. .+++|.++.|.|.+++....+.+.. .... +||++||+|+ |.|+ +
T Consensus 392 ~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i-~ 470 (496)
T PLN02576 392 ASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVAL-G 470 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccH-H
Confidence 11111 11122222222 21 2333 4569999999999998877666655 3333 7999999976 6777 9
Q ss_pred hhHhHHHHHHHHhcCC
Q 035870 404 DGLKAGMTAAHGVLGK 419 (842)
Q Consensus 404 ~A~~SG~~aA~~Il~~ 419 (842)
+|+.||.++|++|+..
T Consensus 471 ~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 471 KCVESGYEAADLVISY 486 (496)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999754
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=307.44 Aligned_cols=383 Identities=18% Similarity=0.221 Sum_probs=237.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCC-CchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV-TYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~~l~~~lGl~~~~~~ 79 (842)
++|+|||||+|||+||+.|.++|++|+||||++++|||++|....|+.+|+|++|+++. ..+.+.+|++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 58999999999999999999999999999999999999999888899999999999753 23457899999999765543
Q ss_pred ceeeEeccCC-Cce-eeCCCCCCcchhhhhhccCChHHHHHHHHHH-hhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 80 MSFSVSLEKG-HGC-EWGSRNGLSSLFAQKKNVLNPYFWQMLREII-KFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 80 ~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
....+.+..+ ..+ .+.. ....++......+...+ ++.... ..... ...+++|+.+|++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~s~~~~~~~~~ 144 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDM----------DGNQVPQELVTKVGETFERILEET----EKVRD--EHEEDMSLLQAISIVL 144 (435)
T ss_pred CCccccccccccccceecC----------CCCCCCHHHHHHHHHHHHHHHHHH----HHHHh--ccCCCcCHHHHHHHHh
Confidence 3222222211 111 1111 11111222222221111 111111 11111 1126789999865421
Q ss_pred ----------CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhh
Q 035870 157 ----------YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLE 226 (842)
Q Consensus 157 ----------~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~ 226 (842)
+.+++.+.++.| +.+.++.++++++.. .. .. ...+. +....+++|+++++++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~---~~----~~---~~~~~-g~~~~~~~G~~~l~~~l~~--- 209 (435)
T PLN02268 145 ERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLK---SW----DQ---EELLE-GGHGLMVRGYDPVINTLAK--- 209 (435)
T ss_pred hhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchh---hc----CC---ccccC-CCceeecCCHHHHHHHHhc---
Confidence 334444445556 456678888777332 11 10 11111 2234688899999999987
Q ss_pred hcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh---hcCCCChHHHHhccccceee-ceEEEec
Q 035870 227 SWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI---LGNQATFDETRILGAFQYVY-SDIFLHR 302 (842)
Q Consensus 227 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~v~l~~ 302 (842)
+.+|++|++|++|..++++|.|++.+|+++.||+||+|+|+.++++. +.+.+++...+++++++|.. .++++.|
T Consensus 210 --~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f 287 (435)
T PLN02268 210 --GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHF 287 (435)
T ss_pred --cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEe
Confidence 44799999999999999999999999988999999999999998753 33446677788889999988 6899999
Q ss_pred CCCCcCCCCCC-------cceeeecc--cCCCceEEEEEccc-----ccCCCCC-----CCCeEEecCCC-CCCcc-eeE
Q 035870 303 DKRFMPQNPAA-------WSAWNFLE--SFDSKVCLTYWLNV-----LQNLGET-----SLPFLVTLNPD-HVPEH-TLL 361 (842)
Q Consensus 303 ~~~~~p~~~~~-------~~~~~~~~--~~~~~~~v~~~~~~-----l~~l~~~-----~~~~~~~l~~~-~~~~~-~~~ 361 (842)
+.++|+..... +....+.. ...+..++..+... +..+.+. +.+.+..+.+. ..|.. .++
T Consensus 288 ~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~ 367 (435)
T PLN02268 288 DSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVS 367 (435)
T ss_pred CCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEec
Confidence 99999764210 11111111 12233344444332 1111111 11122222222 12333 555
Q ss_pred EEEc------CCCCCCHHHH-HHHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcC
Q 035870 362 KWST------GHPVPSVAAS-KASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 362 ~w~~------~~p~~~~~~~-~~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~ 418 (842)
+|.. ++..+.++.. .....+ .+|.++|||||+++. .|++|||+.||+++|++|+.
T Consensus 368 ~W~~dp~~~G~~~~~~~g~~~~~~~~l--~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 368 RWGSDPNSLGCYSYDLVGKPHDLYERL--RAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred ccCCCCCCCccCCCCCCCCCHHHHHHH--hCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 8852 1222222221 111112 346689999999763 56679999999999999974
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=308.14 Aligned_cols=413 Identities=18% Similarity=0.218 Sum_probs=246.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
++|+|||||++||+||++|+++|++|+|+|+++++||++.|++. +|+.+|.|+|++. +.++++.++++++|+......
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~-g~~~~~~~ll~elG~~~~~~~ 172 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNVQNLFGELGINDRLQW 172 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEe-CCCchHHHHHHHhCCccccee
Confidence 58999999999999999999999999999999999999999875 8899999999996 478899999999999765431
Q ss_pred c--eeeEecc--CCCceeeCCCCCCcchhhhhhccCC-hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHh
Q 035870 80 M--SFSVSLE--KGHGCEWGSRNGLSSLFAQKKNVLN-PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNS 154 (842)
Q Consensus 80 ~--~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (842)
. ...+.+. .+....+..+..++..+......+. ...+. ..+.+++..................++.|+.+|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls-~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~ 251 (567)
T PLN02612 173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLT-WPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRK 251 (567)
T ss_pred cccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCC-HHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHh
Confidence 1 1111111 1221111111101111000000000 00000 001111110000000000001111268999999999
Q ss_pred cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCCh-hHHHHHHHHHhhhcCceEE
Q 035870 155 RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRS-HSYVNKVRKQLESWGCQIR 233 (842)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~L~~~l~~~G~~i~ 233 (842)
.+.++.+.+.++.|++...++.+++++ |+..++..+.. +.+...+.....+.|+. ..++++|++.+++.|++|+
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~p~~~---S~~~~l~~l~~--~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~ 326 (567)
T PLN02612 252 QGVPDRVNDEVFIAMSKALNFINPDEL---SMQCILIALNR--FLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVR 326 (567)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCHHHh---hHHHHHHHHHH--HHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999999988887 55555544332 11112223444555654 6899999999998999999
Q ss_pred eCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ceEEEecCCCCcCC
Q 035870 234 TSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SDIFLHRDKRFMPQ 309 (842)
Q Consensus 234 ~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~v~l~~~~~~~p~ 309 (842)
+|++|++|..++++ +.|++.+|+++.||+||+|+|+..+..++++... .+..+.+.++.+.+ .++++.++.+++..
T Consensus 327 l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~ 406 (567)
T PLN02612 327 LNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNT 406 (567)
T ss_pred eCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCC
Confidence 99999999987665 3577788988999999999999999888875332 24455566677666 57889999886421
Q ss_pred -CCCCcc-----e--eeec-----ccCCCceEEEEEcccccC---CC-----CCCCCeEEecCCCC-CC---cceeEEEE
Q 035870 310 -NPAAWS-----A--WNFL-----ESFDSKVCLTYWLNVLQN---LG-----ETSLPFLVTLNPDH-VP---EHTLLKWS 364 (842)
Q Consensus 310 -~~~~~~-----~--~~~~-----~~~~~~~~v~~~~~~l~~---l~-----~~~~~~~~~l~~~~-~~---~~~~~~w~ 364 (842)
....++ + +.+. ..+++...+......... +. +.+.+.+..+.|.. .+ ...+..|.
T Consensus 407 ~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~ 486 (567)
T PLN02612 407 YDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYH 486 (567)
T ss_pred CCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEE
Confidence 100000 0 0000 012233343333321111 11 11122223333322 11 11122221
Q ss_pred c-CCC--CCCHHHHHHHHhhhhhcCCCCeEEeccccCCC---CCchhHhHHHHHHHHhcCCc
Q 035870 365 T-GHP--VPSVAASKASLELDHIQGKRGIWFCGAYQGYG---FHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 365 ~-~~p--~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G---~~e~A~~SG~~aA~~Il~~~ 420 (842)
. ..| .|...+.....++...+|.+||||||||+..+ .+|+|+.||++||++|+...
T Consensus 487 ~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 487 VVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred EeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 111 11110001112233356789999999999654 34999999999999998653
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=303.24 Aligned_cols=395 Identities=18% Similarity=0.215 Sum_probs=253.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDMS 81 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~~ 81 (842)
+|+|||||+|||+||++|+++|++|+|||+++++||+++|.+.+|+.+|.|.|++. ..++++.++++++|+........
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~-~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIF-KSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhc-cccHHHHHHHHHcCCCCceeecc
Confidence 69999999999999999999999999999999999999999999999999999985 46889999999999875532111
Q ss_pred -eeEeccCCCceeeCCCCCCcchhhhhh-ccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCH
Q 035870 82 -FSVSLEKGHGCEWGSRNGLSSLFAQKK-NVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSE 159 (842)
Q Consensus 82 -~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (842)
....+.++..+.+.+ ...... ..+.. .+..++....... ... ......+..|+++|+.++ .++
T Consensus 80 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~-~~~~~~~~~s~~~~l~~~-~~~ 144 (434)
T PRK07233 80 TKTGYYVDGKLYPLGT------PLELLRFPHLSL------IDKFRLGLLTLLA-RRI-KDWRALDKVPAEEWLRRW-SGE 144 (434)
T ss_pred CceEEEECCeEecCCC------HHHHHcCCCCCH------HHHHHhHHHHHhh-hhc-ccccccccccHHHHHHHh-cCH
Confidence 111112222222111 110000 00110 0111111101100 000 111112578999999987 567
Q ss_pred HHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccC-CCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCe
Q 035870 160 LFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLF-GRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238 (842)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V 238 (842)
...+.++.|++..+++.+++++ |+..++..+......... ....+.+++||++.++++|++.+++.|++|+++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 145 GVYEVFWEPLLESKFGDYADDV---SAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred HHHHHHHHHHHhcccCCCcccc---CHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCe
Confidence 7778899999999999999887 555555444322111100 123477899999999999999999999999999999
Q ss_pred eEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecCCCCcC-------CC
Q 035870 239 CSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMP-------QN 310 (842)
Q Consensus 239 ~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p-------~~ 310 (842)
++|+.+++++.+.+.+|+++.||+||+|+|+..+.+++++ .++...+.+.++.|.+ ..+++.++.++.+ ..
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 300 (434)
T PRK07233 222 TSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDP 300 (434)
T ss_pred eEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEEEEecCCCCCCceeeecCC
Confidence 9999988888666667778999999999999999998865 4555667788888877 4667888776421 11
Q ss_pred CCCccee----eecc--cCCCceEE--EEEcccccC--------CCCCCCCeEEecCCCCCC----cceeEEEEcCCCCC
Q 035870 311 PAAWSAW----NFLE--SFDSKVCL--TYWLNVLQN--------LGETSLPFLVTLNPDHVP----EHTLLKWSTGHPVP 370 (842)
Q Consensus 311 ~~~~~~~----~~~~--~~~~~~~v--~~~~~~l~~--------l~~~~~~~~~~l~~~~~~----~~~~~~w~~~~p~~ 370 (842)
...+... ++.. .++++.++ ..+...-.. +.+.+.+.+..+.|...+ ...+.+|.++.|.+
T Consensus 301 ~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~ 380 (434)
T PRK07233 301 GAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIY 380 (434)
T ss_pred CCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccc
Confidence 1111111 1111 11333332 333321111 111112222333332211 12445778888887
Q ss_pred CHHHHHHHHhhhhhcCCCCeEEecccc-C---CCCCchhHhHHHHHHHHhcCC
Q 035870 371 SVAASKASLELDHIQGKRGIWFCGAYQ-G---YGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~aG~~~-g---~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.++.....+.+ .++.+||||||+++ . .++ ++|+.||.+||++|+..
T Consensus 381 ~~g~~~~~~~~--~~~~~~l~~aG~~~~~~~~~~~-~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 381 EPGYLDKIPPY--DTPIEGLYLAGMSQIYPEDRSI-NGSVRAGRRVAREILED 430 (434)
T ss_pred cCchhhcCCCc--ccCcCCEEEeCCcccCCccCch-hHHHHHHHHHHHHHhhh
Confidence 76643322222 34678999999943 1 244 99999999999999764
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=303.76 Aligned_cols=401 Identities=17% Similarity=0.246 Sum_probs=259.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccccc-
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD- 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~- 79 (842)
+||+|||||+|||+||++|+++|++|+|+|+++++||++.|...+|+.+|.|+|++. ..++.+.+++++++.......
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~-~~~~~~~~l~~~l~~~~~~~~~ 83 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFF-SKSPEVMDLWNEILPDDDFLLR 83 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceec-cCCHHHHHHHHHhcCCCccccc
Confidence 589999999999999999999999999999999999999999999999999999995 478899999999986322211
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCH
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSE 159 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (842)
......+.+|+.+.++. .....+ . .+.. .... + ...+++...... ..+++|+++|+.++ +++
T Consensus 84 ~~~~~~~~~g~~~~~p~--~~~~~l---~-~~~~--~~~~----~---~~~~~~~~~~~~--~~~~~s~~e~l~~~-~g~ 145 (479)
T PRK07208 84 PRLSRIYYRGKFFDYPL--KAFDAL---K-NLGL--WRTA----K---CGASYLKARLRP--RKEEDSFEDWVINR-FGR 145 (479)
T ss_pred cccceEEECCEEecCCc--chhHHH---H-hCCH--hHHH----H---HHHHHHHHhcCC--CCCCCCHHHHHHHh-hCH
Confidence 11111222333322211 000000 0 0010 0011 1 111112111111 12679999999986 788
Q ss_pred HHHHHHHHHhhhcccCCCchhhccCC---------HHHHHH-HHhhc-c------ccccCCCCceEEecCChhHHHHHHH
Q 035870 160 LFQKAYLIPICGSIWSCPSEGVTSFS---------AFSVLS-FCRNH-H------LLQLFGRPQWLTVRWRSHSYVNKVR 222 (842)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~---------~~~~~~-~~~~~-~------~~~~~~~~~~~~~~gG~~~l~~~L~ 222 (842)
.+.+.++.|++.++|+.++++++..- ....+. .+... . .........+.+++||++.++++|+
T Consensus 146 ~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~ 225 (479)
T PRK07208 146 RLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAA 225 (479)
T ss_pred HHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHH
Confidence 99999999999999999999985431 111111 11110 0 0000011356778999999999999
Q ss_pred HHhhhcCceEEeCCCeeEEEeCCCcE--EEEe--CCCc--EEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-
Q 035870 223 KQLESWGCQIRTSSEVCSVLPADKGC--TIVC--GDGS--REFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY- 295 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~~~~v--~V~~--~~G~--~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~- 295 (842)
+.+++.|++|++|++|++|..+++++ .++. .+|+ ++.||+||+|+|+..+.+++.+.+++...+.+..++|.+
T Consensus 226 ~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 226 EKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCccee
Confidence 99999999999999999999988763 2332 2453 589999999999999998887656666677788888888
Q ss_pred ceEEEecCCCCc-CCC-------CCC------cceeeecccCCCc-eEEE--EEccc---ccCCCC-----CCCCeEEec
Q 035870 296 SDIFLHRDKRFM-PQN-------PAA------WSAWNFLESFDSK-VCLT--YWLNV---LQNLGE-----TSLPFLVTL 350 (842)
Q Consensus 296 ~~v~l~~~~~~~-p~~-------~~~------~~~~~~~~~~~~~-~~v~--~~~~~---l~~l~~-----~~~~~~~~l 350 (842)
.++++.++.+.. |.. ... +..|.....|++. ..+. ++... +..+.+ ...+.+..+
T Consensus 306 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l 385 (479)
T PRK07208 306 ITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL 385 (479)
T ss_pred EEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc
Confidence 577788876522 211 100 1112211123333 2221 21111 111111 111222233
Q ss_pred CCCCC--Ccc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEeccccCCCCC--chhHhHHHHHHHHhcCCc
Q 035870 351 NPDHV--PEH-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQGYGFH--EDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 351 ~~~~~--~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~g~G~~--e~A~~SG~~aA~~Il~~~ 420 (842)
++... +.. .+.+|.+++|.|..++......+.+ .++.+||++||+|....+. ++|+.||.++|+.|++..
T Consensus 386 ~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 386 GLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred CCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 33211 222 4568899999999999888777664 4567899999986544332 999999999999997753
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=302.34 Aligned_cols=413 Identities=15% Similarity=0.163 Sum_probs=261.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
|+|+|||||++||++|+.|+++|++|+|+|+++++||+++|+. .+|+.+|.|.|++. +.++++.++++++|+......
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~-~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFF-GCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEec-CCcHHHHHHHHhcCCcccccc
Confidence 4899999999999999999999999999999999999999996 47899999999995 478999999999999866432
Q ss_pred c-eeeEe-ccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHH--HHHHHhh------cCCCCCCccccHH
Q 035870 80 M-SFSVS-LEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV--LGYLEEL------ESNPDIDRSETLG 149 (842)
Q Consensus 80 ~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~s~~ 149 (842)
. ..... ..++..........+...+......+....+.. .+.++..... ....... .......+++|+.
T Consensus 155 ~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~-~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~ 233 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEP-YDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFS 233 (569)
T ss_pred cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCH-HHHHhhcccccccchhhhccCccccccccccccCCcHH
Confidence 1 11111 122222111100011111100000000000000 0001000000 0000000 0011123679999
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhH-HHHHHHHHhhhc
Q 035870 150 QFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHS-YVNKVRKQLESW 228 (842)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~L~~~l~~~ 228 (842)
+|+++++.++...+.+++|++.+.++.++++++...+..++.++... .......+++||+.. +++++++.|+++
T Consensus 234 ~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~-----~~~~~l~~~~Gg~~~~l~~pl~~~L~~~ 308 (569)
T PLN02487 234 DWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATK-----TEASLLRMLKGSPDVRLSGPIAKYITDR 308 (569)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhc-----CCcceeeecCCCchHHHHHHHHHHHHHc
Confidence 99999988888899999999999999999999554444444332211 112446788999995 999999999999
Q ss_pred CceEEeCCCeeEEEeCC--Cc----EEEEe---CCCcEEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ce
Q 035870 229 GCQIRTSSEVCSVLPAD--KG----CTIVC---GDGSREFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SD 297 (842)
Q Consensus 229 G~~i~~~~~V~~I~~~~--~~----v~V~~---~~G~~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~ 297 (842)
|++|+++++|++|..++ ++ +.|++ .+++++.+|.||+|+|.+.+.+|+++.+. .+..+.+..+.+.+ .+
T Consensus 309 Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~t 388 (569)
T PLN02487 309 GGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVT 388 (569)
T ss_pred CCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEE
Confidence 99999999999999873 22 35565 34456899999999999999999987422 23366777787777 57
Q ss_pred EEEecCCCCcCCC--------------CCCc----ceeeeccc-----------CCCceEEEEEcccccC---CC-----
Q 035870 298 IFLHRDKRFMPQN--------------PAAW----SAWNFLES-----------FDSKVCLTYWLNVLQN---LG----- 340 (842)
Q Consensus 298 v~l~~~~~~~p~~--------------~~~~----~~~~~~~~-----------~~~~~~v~~~~~~l~~---l~----- 340 (842)
++|.||.++.... ...| ..|.+... ......+..++..... +.
T Consensus 389 v~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~ 468 (569)
T PLN02487 389 VQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIV 468 (569)
T ss_pred EEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHH
Confidence 8899987543211 1111 12333100 1112333433332111 11
Q ss_pred CCCCCeEEecCCCCCCcce--eEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCC---chhHhHHHHHHHH
Q 035870 341 ETSLPFLVTLNPDHVPEHT--LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFH---EDGLKAGMTAAHG 415 (842)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~--~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~---e~A~~SG~~aA~~ 415 (842)
+.+.+.+..+.|......+ ........+.|...+.....++...++.+|||+||||+..+++ |+|++||.+||+.
T Consensus 469 ~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~ 548 (569)
T PLN02487 469 EKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAY 548 (569)
T ss_pred HHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHH
Confidence 1112233334444322222 2244556777776665555556678889999999999988887 9999999999999
Q ss_pred hcCCc
Q 035870 416 VLGKS 420 (842)
Q Consensus 416 Il~~~ 420 (842)
|+...
T Consensus 549 i~~~~ 553 (569)
T PLN02487 549 ICEAG 553 (569)
T ss_pred HHHHh
Confidence 98654
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=300.98 Aligned_cols=407 Identities=15% Similarity=0.183 Sum_probs=249.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .+|+.+|.|+|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~-~~~~~~~~~~~~lg~~~~~~~~ 79 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFF-GCYANLFRLMKKVGAEDNLLLK 79 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEec-CchHHHHHHHHHcCCccccccc
Confidence 689999999999999999999999999999999999999974 57999999999996 4789999999999998654322
Q ss_pred eee--EeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHH--HHHHHhh---c---CCCCCCccccHHH
Q 035870 81 SFS--VSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV--LGYLEEL---E---SNPDIDRSETLGQ 150 (842)
Q Consensus 81 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~---~~~~~~~~~s~~~ 150 (842)
... ....+++.........+...+......+...... ..+.+++.... ....... . ......+++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls-~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 158 (474)
T TIGR02732 80 EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLK-WVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAE 158 (474)
T ss_pred cceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCC-HHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHH
Confidence 111 1112232221111111111111111111100000 01111111000 0000000 0 0011125799999
Q ss_pred HHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhH-HHHHHHHHhhhcC
Q 035870 151 FVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHS-YVNKVRKQLESWG 229 (842)
Q Consensus 151 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~L~~~l~~~G 229 (842)
|+++++.++...+.++.|++.+.++.++++++...+..++..+... ........++||++. +.+.|.+.|+++|
T Consensus 159 ~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~-----~~~s~~~~~~g~~~~~l~~pl~~~L~~~G 233 (474)
T TIGR02732 159 WFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAK-----TEASKLRMLKGSPDKYLTKPILEYIEARG 233 (474)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----CCcceeeeecCCcchhHHHHHHHHHHHCC
Confidence 9999988888899999999999999999998544443333333321 122456667788776 6677999999999
Q ss_pred ceEEeCCCeeEEEeCC--Cc---E-EEEeCCC---cEEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ceE
Q 035870 230 CQIRTSSEVCSVLPAD--KG---C-TIVCGDG---SREFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SDI 298 (842)
Q Consensus 230 ~~i~~~~~V~~I~~~~--~~---v-~V~~~~G---~~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~v 298 (842)
++|+++++|++|+.++ ++ + .|++.+| +++.||+||+|+|++.+.+|+++... ......+..+++.+ ..+
T Consensus 234 g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v 313 (474)
T TIGR02732 234 GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATV 313 (474)
T ss_pred CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEE
Confidence 9999999999999864 22 2 3445443 46899999999999999999986321 23566777888877 477
Q ss_pred EEecCCCCcCCC-------------CC--Cc---ceeeecc-----------cCCCceEEEEEccc---ccCC-----CC
Q 035870 299 FLHRDKRFMPQN-------------PA--AW---SAWNFLE-----------SFDSKVCLTYWLNV---LQNL-----GE 341 (842)
Q Consensus 299 ~l~~~~~~~p~~-------------~~--~~---~~~~~~~-----------~~~~~~~v~~~~~~---l~~l-----~~ 341 (842)
++.++.++.... -. .+ ..|.+.. .+.....+...+.. +..+ .+
T Consensus 314 ~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 393 (474)
T TIGR02732 314 QLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAK 393 (474)
T ss_pred EEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHH
Confidence 889886432110 00 01 1223310 01112223222221 1111 11
Q ss_pred CCCCeEEecCCCCCCcceeE--EEEcCCCCCC--HHHHHHHHhhhhhcCCCCeEEeccccCCCCC---chhHhHHHHHHH
Q 035870 342 TSLPFLVTLNPDHVPEHTLL--KWSTGHPVPS--VAASKASLELDHIQGKRGIWFCGAYQGYGFH---EDGLKAGMTAAH 414 (842)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~--~w~~~~p~~~--~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~---e~A~~SG~~aA~ 414 (842)
.+.+.+..+.|......++. ......+.|. ++. ...++...++.+|||+||||+..+++ |+|+.||.+||+
T Consensus 394 ~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~--~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~ 471 (474)
T TIGR02732 394 RVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGM--DPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAA 471 (474)
T ss_pred HHHHHHHHhCccccCCceeEEEEEEecCceeccCCCC--cccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHH
Confidence 12233334444322222222 3333444444 433 22345557788999999999988776 999999999999
Q ss_pred Hhc
Q 035870 415 GVL 417 (842)
Q Consensus 415 ~Il 417 (842)
.||
T Consensus 472 ~i~ 474 (474)
T TIGR02732 472 AIL 474 (474)
T ss_pred HhC
Confidence 875
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-31 Score=298.00 Aligned_cols=406 Identities=18% Similarity=0.217 Sum_probs=243.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+|+|||||++||+||++|+++|++|+|||+++++||+++|.. .+|+.+|.|.|++. ..++++.++++++|+.......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~-~~~~~~~~l~~~lg~~~~~~~~ 79 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFF-GAYPNMLQLLKELNIEDRLQWK 79 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceec-cCCchHHHHHHHcCCccceeec
Confidence 599999999999999999999999999999999999999985 47899999999996 5789999999999987543321
Q ss_pred eeeEec----cCCCceeeCCCCCCcchhhhhhccCC-hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhc
Q 035870 81 SFSVSL----EKGHGCEWGSRNGLSSLFAQKKNVLN-PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSR 155 (842)
Q Consensus 81 ~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 155 (842)
.....+ .++.......+ .++.........+. ..... ..+..++..................+++|+.+|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 157 (453)
T TIGR02731 80 SHSMIFNQPDKPGTFSRFDFP-DIPAPFNGVAAILRNNDMLT-WPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQ 157 (453)
T ss_pred CCceEEecCCCCcceeeccCC-CCCCCHHHHHHHhcCcCCCC-HHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHc
Confidence 111111 11111111110 01000000000000 00000 0011111111100000000111112689999999999
Q ss_pred CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCC-hhHHHHHHHHHhhhcCceEEe
Q 035870 156 GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR-SHSYVNKVRKQLESWGCQIRT 234 (842)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~L~~~l~~~G~~i~~ 234 (842)
++++.+.+.++.|++.++++.+++++ |+..++.++... +.. ..+.......|+ ++.++++|++.+++.|++|++
T Consensus 158 ~~~~~~~~~~~~pl~~~~~~~~p~~~---S~~~~~~~l~~~-~~~-~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l 232 (453)
T TIGR02731 158 GVPERVNDEVFIAMSKALNFINPDEL---SMTVVLTALNRF-LQE-RHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRL 232 (453)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHH-Hhc-CCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeC
Confidence 99999999999999999999999887 555544443320 000 011112223343 578999999999999999999
Q ss_pred CCCeeEEEeCCCc-E-EEEeCCCc-----EEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-ceEEEecCCC
Q 035870 235 SSEVCSVLPADKG-C-TIVCGDGS-----REFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY-SDIFLHRDKR 305 (842)
Q Consensus 235 ~~~V~~I~~~~~~-v-~V~~~~G~-----~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~-~~v~l~~~~~ 305 (842)
|++|++|..++++ + .|++.+|+ ++.||.||+|+|++.+.++++...+ ....+.+.++++.+ .++++.++.+
T Consensus 233 ~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 312 (453)
T TIGR02731 233 NSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRK 312 (453)
T ss_pred CCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccc
Confidence 9999999875554 4 56676655 7899999999999999999865332 34456677777766 5788888887
Q ss_pred CcCCCCCC------------cceeeecccCCCceEEEEEcccccC---CCC-----CCCCeEEecCCCC----CCcc-ee
Q 035870 306 FMPQNPAA------------WSAWNFLESFDSKVCLTYWLNVLQN---LGE-----TSLPFLVTLNPDH----VPEH-TL 360 (842)
Q Consensus 306 ~~p~~~~~------------~~~~~~~~~~~~~~~v~~~~~~l~~---l~~-----~~~~~~~~l~~~~----~~~~-~~ 360 (842)
+.+..... |+...+...+++..++.++...... +.+ .+.+.+..+.|.. .+.. +.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~ 392 (453)
T TIGR02731 313 LTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILK 392 (453)
T ss_pred cCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEE
Confidence 65332100 0011111123334555554432211 111 1112222233221 1222 33
Q ss_pred EEEE---cCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCC---CCCchhHhHHHHHHHHhc
Q 035870 361 LKWS---TGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGY---GFHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 361 ~~w~---~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~---G~~e~A~~SG~~aA~~Il 417 (842)
..|. ++.+.+.++.. .......++.+||||||+|+.. |.+|+|+.||.+||++|.
T Consensus 393 ~~~~~~p~a~~~~~pg~~--~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 393 YKVVKTPRSVYKTTPGRQ--QYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEEEECCCceeccCCCCh--hhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 3442 23222223211 1122225678999999998844 445999999999999873
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=293.29 Aligned_cols=385 Identities=14% Similarity=0.149 Sum_probs=233.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--C--eeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--G--VDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||||++||+||..|+++|++|+|||+++++||++.|...+ | ..+|+|++|+++.....+..+.+++|++..
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~ 240 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH 240 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence 589999999999999999999999999999999999999999874 3 489999999976444447789999999876
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.......++..+|..+.... . ..+...+...+..+. .+..... ...++.|+++|+.+..
T Consensus 241 ~~~~~~~~~~~~G~~v~~~~--------~---~~~~~~~~~~l~~~~-------~l~~~~~---~~~~d~Sl~~~le~~~ 299 (738)
T PLN02529 241 KVRDNCPLYKPDGALVDKEI--------D---SNIEFIFNKLLDKVT-------ELRQIMG---GFANDISLGSVLERLR 299 (738)
T ss_pred ccCCCceEEeCCCcCcchhh--------h---hhHHHHHHHHHHHHH-------HHHHhcc---cCccCCCHHHHHHHHH
Confidence 55433334334443321110 0 000000111111111 1111111 1226889999997542
Q ss_pred ------CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 157 ------YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 157 ------~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
.++. ...++.-....+....+..++.+++. .+..... ....+..+.+.||+++++++|++.+
T Consensus 300 ~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~---~~~~~~~---~e~~G~~~~i~GG~~~Li~aLA~~L----- 367 (738)
T PLN02529 300 QLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAA---YWDQDDP---YEMGGDHCFLAGGNWRLINALCEGV----- 367 (738)
T ss_pred hhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhh---Hhhhccc---cccCCceEEECCcHHHHHHHHHhcC-----
Confidence 2222 22333333333333334444333332 2222111 1223557889999999999999865
Q ss_pred eEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh---hcCCCChHHHHhccccceee-ceEEEecCCCC
Q 035870 231 QIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI---LGNQATFDETRILGAFQYVY-SDIFLHRDKRF 306 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~ 306 (842)
.|++|++|++|.+++++|.|++. ++++.||+||+|+|+.++++. +.|++++...+++.+++|++ .++++.|+.++
T Consensus 368 ~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 368 PIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred CEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 69999999999999999999864 458999999999999999843 45557777889999999999 79999999999
Q ss_pred cCCCCCCc-------------ce-eeecccCCCceEEEEEcccc----cCCCC-----CCCCeEEec-CCC--C--CCcc
Q 035870 307 MPQNPAAW-------------SA-WNFLESFDSKVCLTYWLNVL----QNLGE-----TSLPFLVTL-NPD--H--VPEH 358 (842)
Q Consensus 307 ~p~~~~~~-------------~~-~~~~~~~~~~~~v~~~~~~l----~~l~~-----~~~~~~~~l-~~~--~--~~~~ 358 (842)
|+.....+ .. +++...+++..++.+..+.. ..+.+ .+...+..+ ++. . .|..
T Consensus 447 W~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~ 526 (738)
T PLN02529 447 WGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQ 526 (738)
T ss_pred ccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceE
Confidence 96642111 00 11111123333333332211 11111 011122222 221 1 2222
Q ss_pred -eeEEEEc---CCCCCC---HHHHHHHHhhhhhcCCCCeEEeccccCC---CCCchhHhHHHHHHHHhcCC
Q 035870 359 -TLLKWST---GHPVPS---VAASKASLELDHIQGKRGIWFCGAYQGY---GFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 359 -~~~~w~~---~~p~~~---~~~~~~~~~~~~~~~~~~l~~aG~~~g~---G~~e~A~~SG~~aA~~Il~~ 419 (842)
+.++|.. ....|. ++...........+..++|||||+++.. |++|||+.||.++|++|+..
T Consensus 527 ~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~ 597 (738)
T PLN02529 527 TICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHV 597 (738)
T ss_pred EEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHH
Confidence 5568863 222222 1111111111112224799999998744 55699999999999999864
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=285.19 Aligned_cols=294 Identities=14% Similarity=0.156 Sum_probs=191.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-----CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-----VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDM 75 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-----~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~ 75 (842)
+||+|||||+|||+||++|++.| ++|+|||+++++||+++|.+..|+.+|.|++++++...+.+.++++++|+..
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCcc
Confidence 47999999999999999999887 8999999999999999999999999999999998655667779999999865
Q ss_pred ccccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHh-hhHHHHHH---------------HHhhcCC
Q 035870 76 EMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIK-FKDDVLGY---------------LEELESN 139 (842)
Q Consensus 76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~ 139 (842)
...+......+. +....+.. .+ ..+.+.....+.+... +....... .......
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~-~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (539)
T PLN02568 86 SDEPWECMDGFP-DRPKTVAE-GG---------FEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARV 154 (539)
T ss_pred ccCcceeccccc-ccceEEcc-CC---------cCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccch
Confidence 432110000000 00011110 00 0111111111111110 00000000 0000000
Q ss_pred CCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc-c-c-----ccc--C-----CCC
Q 035870 140 PDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH-H-L-----LQL--F-----GRP 205 (842)
Q Consensus 140 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~-----~~~--~-----~~~ 205 (842)
.....+.|+++|++++ +.+ +.+.+..|...+++......++..++...+..+... . + ... . ..+
T Consensus 155 ~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g 232 (539)
T PLN02568 155 CESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG 232 (539)
T ss_pred hccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC
Confidence 0011245899998875 332 334445565566666555544322222221111100 0 0 000 0 123
Q ss_pred ceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH-------hhcC
Q 035870 206 QWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK-------ILGN 278 (842)
Q Consensus 206 ~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~-------ll~~ 278 (842)
..+.++||+++|++.|++.++ +.+|++|++|++|.+++++|.|++.+|+++.||+||+|+|+.++++ .+.|
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P 310 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSP 310 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecC
Confidence 477899999999999999996 5679999999999999999999999998999999999999999985 3666
Q ss_pred CCChHHHHhccccceee-ceEEEecCCCCcCC
Q 035870 279 QATFDETRILGAFQYVY-SDIFLHRDKRFMPQ 309 (842)
Q Consensus 279 ~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~ 309 (842)
+++....+++..++|+. +++++.|+.++|+.
T Consensus 311 ~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 311 PLPDFKTDAISRLGFGVVNKLFVELSPRPDGS 342 (539)
T ss_pred CCCHHHHHHHHhcCCceeeEEEEEecCCCCCc
Confidence 67777889999999988 79999999998864
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=285.26 Aligned_cols=386 Identities=17% Similarity=0.193 Sum_probs=229.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCe----eeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV----DLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~----~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||||++||+||+.|++.|++|+|+|+++++||++.|....|. .+|+|++|+++.....+..+++++|+...
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~ 318 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH 318 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence 58999999999999999999999999999999999999999988653 68999999976544456789999998766
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhc-
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSR- 155 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 155 (842)
.......+++.+|..+.... ... ....+...+....++. ... . ......+.|++++++..
T Consensus 319 ~~~~~~~~~~~dG~~~~~~~--------~~~---v~~~f~~lL~~~~klr----~~~---~-~~~~~~D~SLg~~le~~~ 379 (808)
T PLN02328 319 KVRDICPLYLPDGKAVDAEI--------DSK---IEASFNKLLDRVCKLR----QAM---I-EEVKSVDVNLGTALEAFR 379 (808)
T ss_pred ecCCCceEEeCCCcCcchhh--------hhh---HHHHHHHHHHHHHHHH----Hhh---h-hcccccCcCHHHHHHHHh
Confidence 54433333334443221110 000 0011111111111110 000 0 00111467899988632
Q ss_pred -----CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 156 -----GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 156 -----~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
...+. ...++.+.+..........+..++ +..+.... .....+.++.++||+++|+++|++.+
T Consensus 380 ~~~~~~~~~~-e~~Ll~w~lanlE~~~gs~ls~LS---l~~w~qd~---~~e~~G~~~~v~GG~~~Li~aLa~~L----- 447 (808)
T PLN02328 380 HVYKVAEDPQ-ERMLLNWHLANLEYANASLMSNLS---MAYWDQDD---PYEMGGDHCFIPGGNDTFVRELAKDL----- 447 (808)
T ss_pred hhhccCCCHH-HHHHHHHHHHHHhccchhhHHHHH---hhhhhccc---cccCCCeEEEECCcHHHHHHHHHhhC-----
Confidence 11211 123333333222111112221111 11111110 01123457889999999999999987
Q ss_pred eEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH--h-hcCCCChHHHHhccccceee-ceEEEecCCCC
Q 035870 231 QIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRILGAFQYVY-SDIFLHRDKRF 306 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~ 306 (842)
.|++|++|++|.+.+++|.| +.+|+++.||+||+|+|+.++.+ + +.++++....+++.++.|+. .++++.|+.++
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~F 526 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNF 526 (808)
T ss_pred CcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 49999999999999999988 45677899999999999999984 2 44557778889999999999 79999999999
Q ss_pred cCCCCCCcc--------------eeeecccCCCceEEEEEcccc-----cCCCCC-----CCCeEEec-CCC----CCCc
Q 035870 307 MPQNPAAWS--------------AWNFLESFDSKVCLTYWLNVL-----QNLGET-----SLPFLVTL-NPD----HVPE 357 (842)
Q Consensus 307 ~p~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~l-----~~l~~~-----~~~~~~~l-~~~----~~~~ 357 (842)
|+.....+. .+++.. ..+..++..++... ..+.+. +...+..+ ++. ..|.
T Consensus 527 W~~~~d~fG~l~~d~s~rG~~~lf~s~s~-~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~ 605 (808)
T PLN02328 527 WGGEIDTFGHLTEDPSMRGEFFLFYSYSS-VSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPV 605 (808)
T ss_pred ccCCCCceEEEeecCCCCceEEEEecCCC-CCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcc
Confidence 875422110 011211 12233444443321 111110 11122222 221 1232
Q ss_pred c-eeEEEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcCC
Q 035870 358 H-TLLKWST------GHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 358 ~-~~~~w~~------~~p~~~~~~~~-~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~~ 419 (842)
. ++++|.. ++..+.++... ....+.+.-+.++|||||+++. .|+++||+.||.++|++|+..
T Consensus 606 ~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 606 QAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRV 678 (808)
T ss_pred eEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHH
Confidence 2 6668863 22222222211 1112221112469999999764 456799999999999999864
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=255.60 Aligned_cols=400 Identities=20% Similarity=0.258 Sum_probs=267.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeE--EEEecCCCCCCCcee-EeeCCeeeecceEeecCCCc--hhHHHHHHHcCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEV--VLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNRVTY--PNMMEFFESLGVDM 75 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V--~VlEa~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~--~~~~~l~~~lGl~~ 75 (842)
|+|+|||||+|||+|||+|++.+-+| +|+|+.+|+||+++| ...+|+.+|.|++.+.+... -.+.+++.++|++.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~ 91 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED 91 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccc
Confidence 68999999999999999999997655 569999999999999 44589999999999965332 25779999999988
Q ss_pred ccccceeeEe-------ccCCCceeeCCCCCCcc-hhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCcccc
Q 035870 76 EMSDMSFSVS-------LEKGHGCEWGSRNGLSS-LFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSET 147 (842)
Q Consensus 76 ~~~~~~~~~~-------~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 147 (842)
+....+.... +..++....+. .+.. ++.......++.++.++.+. ++... .....++|
T Consensus 92 e~~~i~~~~paaknr~l~~~~~L~~vP~--sl~~s~~~~l~p~~k~L~~a~l~e~----------fr~~~--~~~~~dES 157 (491)
T KOG1276|consen 92 ELQPIDISHPAAKNRFLYVPGKLPTVPS--SLVGSLKFSLQPFGKPLLEAFLREL----------FRKKV--SDPSADES 157 (491)
T ss_pred eeeecCCCChhhhheeeccCcccccCCc--ccccccccccCcccchhHHHHHhhh----------ccccC--CCCCcccc
Confidence 7765543322 12222222111 1111 11111111122222222211 11111 22236899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc-------c-----------------c-cC
Q 035870 148 LGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL-------L-----------------Q-LF 202 (842)
Q Consensus 148 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~-----------------~-~~ 202 (842)
+++|++++ +++++.+.++.|++.++|+.++.+++..+++..++.....+- . + ..
T Consensus 158 V~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~ 236 (491)
T KOG1276|consen 158 VESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKK 236 (491)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcc
Confidence 99999998 789999999999999999999999965555544444433210 0 0 11
Q ss_pred CCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEe--CCCc-EEeCCEEEEccChHHHHHhhcC
Q 035870 203 GRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVC--GDGS-REFYNSCVMALHAPDALKILGN 278 (842)
Q Consensus 203 ~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~--~~G~-~~~ad~VV~A~p~~~~~~ll~~ 278 (842)
..-..+.++||++.+.+++.+.|....+.|.++-++..+..... +|.+++ .++. ....++++.|+|+..+.+++++
T Consensus 237 e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~ 316 (491)
T KOG1276|consen 237 EKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRG 316 (491)
T ss_pred cccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccc
Confidence 22345778999999999999999888889999999998876554 465555 4453 3556677779999999999987
Q ss_pred CCChHHHHhccccceeec-eEEEecCCC-----------CcCCC--------CCCcceeeecccCC-CceEEEEEccccc
Q 035870 279 QATFDETRILGAFQYVYS-DIFLHRDKR-----------FMPQN--------PAAWSAWNFLESFD-SKVCLTYWLNVLQ 337 (842)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~-~v~l~~~~~-----------~~p~~--------~~~~~~~~~~~~~~-~~~~v~~~~~~l~ 337 (842)
..+....++.+++|.+. .|.+.|... ++|.. ...|++..|+...+ .++.+........
T Consensus 317 -~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~ 395 (491)
T KOG1276|consen 317 -LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGST 395 (491)
T ss_pred -cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccc
Confidence 56777899999999995 455666652 45521 12555555554322 2333332222222
Q ss_pred C--CC--------CCCCCeE-EecCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCC--CCeEEecc-ccCCCC
Q 035870 338 N--LG--------ETSLPFL-VTLNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH-IQGK--RGIWFCGA-YQGYGF 401 (842)
Q Consensus 338 ~--l~--------~~~~~~~-~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~--~~l~~aG~-~~g~G~ 401 (842)
+ +. +...+.+ ..|+....|.. .++-|..+.|+|++++.+.+..+.. .+.. .+|++||. |.|.++
T Consensus 396 n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~v 475 (491)
T KOG1276|consen 396 NTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSV 475 (491)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCCh
Confidence 1 00 0011111 22444444554 4458888999999999998888877 4443 49999999 668888
Q ss_pred CchhHhHHHHHHHHhc
Q 035870 402 HEDGLKAGMTAAHGVL 417 (842)
Q Consensus 402 ~e~A~~SG~~aA~~Il 417 (842)
.+||.||+.+|.+++
T Consensus 476 -gdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 476 -GDCIESGRKTAVEVI 490 (491)
T ss_pred -hHHHHhhHHHHHhhc
Confidence 999999999998875
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-28 Score=275.86 Aligned_cols=385 Identities=14% Similarity=0.136 Sum_probs=224.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC----CeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD----GVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
++|+|||||++||+||+.|++.|++|+|+|+++++|||+.|.+.. |+.+|+|++|++......+..+++++|+...
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~ 264 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY 264 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence 479999999999999999999999999999999999999999874 5789999999976444345578899999865
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHh--
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNS-- 154 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-- 154 (842)
.......++..+|+.+.. ... ......+...+....++ .... . ....+.|++++++.
T Consensus 265 ~~~~~~~ly~~~Gk~v~~--------~~~---~~ve~~fn~lLd~~~~l----r~l~----~--~~~~D~SLg~aLe~~~ 323 (881)
T PLN03000 265 KVRDKCPLYRVDGKPVDP--------DVD---LKVEVAFNQLLDKASKL----RQLM----G--DVSMDVSLGAALETFR 323 (881)
T ss_pred ecCCCCeEEEeCCcCCch--------hhh---hhHHHHHHHHHHHHHHH----HHHh----c--ccCcCCcHHHHHHHHH
Confidence 433222222233332110 000 00000011111111000 0111 0 11135566654331
Q ss_pred ----cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 155 ----RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 155 ----~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
..+.++. ..++.+.+..+.......+ +...+ .++.... .....+..+.++||+++|+++|++.+
T Consensus 324 ~~~g~~~t~e~-~~Ll~w~lanLE~~~as~l---s~LSl-~~wdqd~--~~e~~G~~~~v~GG~~~LieaLa~~L----- 391 (881)
T PLN03000 324 QVSGNDVATEE-MGLFNWHLANLEYANAGLV---SKLSL-AFWDQDD--PYDMGGDHCFLPGGNGRLVQALAENV----- 391 (881)
T ss_pred HHHcccCCHHH-HHHHHHHHHHHhcccccCH---HHHHH-HHhhhcc--cccCCCceEEeCCCHHHHHHHHHhhC-----
Confidence 1122211 1222222222211111112 11111 1111100 01123456789999999999999988
Q ss_pred eEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH---hhcCCCChHHHHhccccceee-ceEEEecCCCC
Q 035870 231 QIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK---ILGNQATFDETRILGAFQYVY-SDIFLHRDKRF 306 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~ 306 (842)
.|+++++|++|++++++|.|++.+ +++.||+||+|+|+.++++ .+.|+++....+++.+++|+. .++++.|+.++
T Consensus 392 ~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~F 470 (881)
T PLN03000 392 PILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVF 470 (881)
T ss_pred CcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 499999999999999999998765 4899999999999999983 244557788899999999999 79999999999
Q ss_pred cCCCCCC-------------cce-eeecccCCCceEEEEEccc-----ccCCCCC-----CCCeEEecCC-C----CCCc
Q 035870 307 MPQNPAA-------------WSA-WNFLESFDSKVCLTYWLNV-----LQNLGET-----SLPFLVTLNP-D----HVPE 357 (842)
Q Consensus 307 ~p~~~~~-------------~~~-~~~~~~~~~~~~v~~~~~~-----l~~l~~~-----~~~~~~~l~~-~----~~~~ 357 (842)
|+.+... |.. +++. ...+..++..++.. +..+.+. +...+..+.+ . ..|.
T Consensus 471 W~~d~~~FG~l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv 549 (881)
T PLN03000 471 WSTDLDTFGHLTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPL 549 (881)
T ss_pred ccCCCCceeEEecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCce
Confidence 9764211 111 1111 11233344444432 1111111 1122222221 1 1222
Q ss_pred c-eeEEEEc------CCCCCCHHHHH-HHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcCCc
Q 035870 358 H-TLLKWST------GHPVPSVAASK-ASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 358 ~-~~~~w~~------~~p~~~~~~~~-~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
. ++++|.. ++..+.++... ....+.+.-+.++|||||+++. .|+++||+.||.++|++|+...
T Consensus 550 ~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 550 QTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred EEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 2 5568843 23333333222 1112221112358999999764 4667999999999999998643
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=277.45 Aligned_cols=388 Identities=17% Similarity=0.207 Sum_probs=228.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCceeEeeCCeeeecceEeecC---CCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR---VTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~---~~~~~~~~l~~~lGl~~~ 76 (842)
.||+|||||++||+||++|+++|. +|+|||+++++||++.+....|+.+|.|++|++. ...+.+.++++++|+...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~ 106 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTF 106 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCcee
Confidence 389999999999999999999998 6999999999999999999999999999999953 234567799999999866
Q ss_pred cccce---eeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccH--HHH
Q 035870 77 MSDMS---FSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETL--GQF 151 (842)
Q Consensus 77 ~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~ 151 (842)
..... ..+...+|+.+ .. .. ...+......+.++.... ..... +...++.++ ..+
T Consensus 107 ~~~~~~~~~~~~~~~g~~~--------~~---~~----~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~s~~~~~~ 166 (487)
T PLN02676 107 YSDFDNLSSNIYKQDGGLY--------PK---KV----VQKSMKVADASDEFGENL---SISLS--AKKAVDISILTAQR 166 (487)
T ss_pred ecCccccceeEECCCCCCC--------CH---HH----HHHHHHHHHHHHHHHHHH---HHhhc--ccCCCCccHHHHHH
Confidence 43211 11111122211 00 00 011111122222211111 11000 111245555 344
Q ss_pred HHhcC-CCHHHHHHHHHHhhh-cccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEe--cCChhHHHHHHHHHhhh
Q 035870 152 VNSRG-YSELFQKAYLIPICG-SIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTV--RWRSHSYVNKVRKQLES 227 (842)
Q Consensus 152 l~~~~-~~~~~~~~~~~p~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gG~~~l~~~L~~~l~~ 227 (842)
+.... .... .....-+.. ..++.+++.+ |+..+.. .... ...+ +.-+.+ +||++++++.|++.+.+
T Consensus 167 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---S~~~~~~---~~~~-~~~g-~~~~~~~~~~G~~~l~~~La~~~~~ 236 (487)
T PLN02676 167 LFGQVPKTPL--EMVIDYYNYDYEFAEPPRVT---SLKNTEP---NPTF-VDFG-EDEYFVADPRGYESLVYYLAEQFLS 236 (487)
T ss_pred HHhhCCCCHH--HHHHHHHhccceeccCcccc---chhhcCc---cccc-ccCC-CceEEeecCCCHHHHHHHHHhhccc
Confidence 44331 1111 111111111 1245555554 3332211 0000 0111 222333 68999999999998754
Q ss_pred c------CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH--h-hcCCCChHHHHhccccceee-ce
Q 035870 228 W------GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRILGAFQYVY-SD 297 (842)
Q Consensus 228 ~------G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~ 297 (842)
. +.+|++|++|++|..++++|.|++.+|+++.||+||+|+|+.++.+ + +.|+++....+++++++++. .+
T Consensus 237 ~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~K 316 (487)
T PLN02676 237 TKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTK 316 (487)
T ss_pred ccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEE
Confidence 3 3579999999999999999999999998999999999999999985 3 45556777788999999988 79
Q ss_pred EEEecCCCCcCCCCC-C-----------cceee-eccc-CCCceEEEEEccc----ccCCCCC-----CCCeEEecCCCC
Q 035870 298 IFLHRDKRFMPQNPA-A-----------WSAWN-FLES-FDSKVCLTYWLNV----LQNLGET-----SLPFLVTLNPDH 354 (842)
Q Consensus 298 v~l~~~~~~~p~~~~-~-----------~~~~~-~~~~-~~~~~~v~~~~~~----l~~l~~~-----~~~~~~~l~~~~ 354 (842)
+++.|+.++|+.+.. . +..|. +... ++....+.+..+. +..+.+. +.+.+..+.+..
T Consensus 317 v~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~ 396 (487)
T PLN02676 317 IFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPN 396 (487)
T ss_pred EEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCC
Confidence 999999999986311 1 11121 1111 2223333333221 1112110 112222222211
Q ss_pred --CCcc-eeEEEEc------CCCCCCHHHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 355 --VPEH-TLLKWST------GHPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 355 --~~~~-~~~~w~~------~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.|.. ..+.|.. ++..+.++....... .-.+|.++|||||+.+ ..|++|||+.||+++|++|+..
T Consensus 397 ~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~-~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~ 472 (487)
T PLN02676 397 IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFD-QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLEC 472 (487)
T ss_pred CCCcceEEecccCCCCCCCcccCCCCCCCChhHHH-HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHH
Confidence 1222 4447743 223233332221111 1135678999999966 4677799999999999999853
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=256.55 Aligned_cols=394 Identities=18% Similarity=0.151 Sum_probs=229.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
.||||||||+|||+||+.|++.|++|+|||+++++|||+.|.+..|...|.|.+++++ ..+.+..+++++|+...+...
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~fi~ 86 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEPFIR 86 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCceec
Confidence 4899999999999999999999999999999999999999999989999999999987 777888999999999877533
Q ss_pred eeeEeccCCCceeeCCC-CCCcchhhhhhccCChHHHHHHHHHHhhhHHH--HHHHH-hhcCCCCCCccccHHHHHHhcC
Q 035870 81 SFSVSLEKGHGCEWGSR-NGLSSLFAQKKNVLNPYFWQMLREIIKFKDDV--LGYLE-ELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 81 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.... ...|... ...+........ ........+.... ...+. .........+.+++.+| . .
T Consensus 87 ~g~~------~~~~~~~~~~~p~~~~~~~~-------d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~-~- 150 (450)
T COG1231 87 DGDN------VIGYVGSSKSTPKRSLTAAA-------DVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K-T- 150 (450)
T ss_pred cCcc------cccccccccccchhccchhh-------hhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h-h-
Confidence 1110 0111100 000000000000 0000000000000 00000 00000001145666777 1 1
Q ss_pred CCHHHHHHHHHHh-hhcccC-CCchhhccCCHHHHHHHHhh-ccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEE
Q 035870 157 YSELFQKAYLIPI-CGSIWS-CPSEGVTSFSAFSVLSFCRN-HHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIR 233 (842)
Q Consensus 157 ~~~~~~~~~~~p~-~~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~ 233 (842)
.+ .+.+-.+. ....++ .+..+............... ....+...+...+.+.|||+.+++++++.+ |..|.
T Consensus 151 ~~---~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql---~~~I~ 224 (450)
T COG1231 151 SS---LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL---GTRIL 224 (450)
T ss_pred cc---ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh---hceEE
Confidence 00 01111111 111222 22222211111111111111 111122333455555699999999999999 88999
Q ss_pred eCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh-hcCCCChHHHHhccccceee-ceEEEecCCCCcCCCC
Q 035870 234 TSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI-LGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNP 311 (842)
Q Consensus 234 ~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l-l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~ 311 (842)
++++|++|.+++++|+|++.+..++.+|.||||+|+..+.++ +.|.+++...+++..++|.+ +++.+.|+.++|.+..
T Consensus 225 ~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~ 304 (450)
T COG1231 225 LNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG 304 (450)
T ss_pred ecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcc
Confidence 999999999999999999999458999999999999999987 45556777888889999999 7999999999997765
Q ss_pred CCcceee----------eccc--CCCceEE-EEEc-cc----ccCCCCC-----CCCeEEecCCCCC---Ccc-eeEEEE
Q 035870 312 AAWSAWN----------FLES--FDSKVCL-TYWL-NV----LQNLGET-----SLPFLVTLNPDHV---PEH-TLLKWS 364 (842)
Q Consensus 312 ~~~~~~~----------~~~~--~~~~~~v-~~~~-~~----l~~l~~~-----~~~~~~~l~~~~~---~~~-~~~~w~ 364 (842)
..+.+. ++.. .++..++ .++. .. +..+.+. ....+..+.+... .+. ....|.
T Consensus 305 -~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~ 383 (450)
T COG1231 305 -ILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWS 383 (450)
T ss_pred -cCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeeecc
Confidence 111111 1111 1333333 3222 21 1111111 0111222333211 122 344664
Q ss_pred c---CCCCCCHHHHHHHHhhhh--hcCCCCeEEec-ccc--CCCCCchhHhHHHHHHHHhcC
Q 035870 365 T---GHPVPSVAASKASLELDH--IQGKRGIWFCG-AYQ--GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 365 ~---~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG-~~~--g~G~~e~A~~SG~~aA~~Il~ 418 (842)
. ....+...++....+..+ ..+.++||||| +++ -.|+.|||+.||++||.+|..
T Consensus 384 ~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~ 445 (450)
T COG1231 384 KDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHA 445 (450)
T ss_pred cCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHH
Confidence 3 222122222222222222 45778999999 554 467789999999999999965
|
|
| >TIGR03467 HpnE squalene-associated FAD-dependent desaturase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=272.84 Aligned_cols=385 Identities=19% Similarity=0.241 Sum_probs=240.2
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCee--eecceEeecCCCchhHHHHHHHcCCCcccccc--eeeEeccCC
Q 035870 14 VSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD--LDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM--SFSVSLEKG 89 (842)
Q Consensus 14 saA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~--~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~--~~~~~~~~g 89 (842)
+||++|+++|++|+|||+++++||+++|...+|+. +|.|+|++. ..++++.++++++|++...... ...+...++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~-~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~ 79 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLL-GAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGG 79 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEE-cccHHHHHHHHHhCCchhhhcccCCcceecCCC
Confidence 58999999999999999999999999999998654 999999995 5788999999999998664311 111111222
Q ss_pred CceeeCCCCCCcchhhhh-----hccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCHHHHHH
Q 035870 90 HGCEWGSRNGLSSLFAQK-----KNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKA 164 (842)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 164 (842)
....+.. ..++..+... ...+++. ...++.+. ...... ......++.|+.+|++++++++.+.+.
T Consensus 80 ~~~~~~~-~~~~~p~~~~~~~~~~~~l~~~---~~~~~~~~---~~~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~~ 149 (419)
T TIGR03467 80 RLSRLRL-SRLPAPLHLARGLLRAPGLSWA---DKLALARA---LLALRR---TRFRALDDTTVGDWLQAAGQSERLIER 149 (419)
T ss_pred CceeecC-CCCCCCHHHHHHHhcCCCCCHH---HHHHHHHH---HHHHHh---cCccccCCCCHHHHHHHcCCCHHHHHH
Confidence 2111110 0111110000 0011111 11111111 111110 001123689999999999889899999
Q ss_pred HHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHH-HHHHHHhhhcCceEEeCCCeeEEEe
Q 035870 165 YLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYV-NKVRKQLESWGCQIRTSSEVCSVLP 243 (842)
Q Consensus 165 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~-~~L~~~l~~~G~~i~~~~~V~~I~~ 243 (842)
++.|++.++|+.+++++ |+..+...+... +........+.+++||+++++ +.|++.+++.|++|++|++|++|+.
T Consensus 150 ~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~-~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~ 225 (419)
T TIGR03467 150 LWEPLLLSALNTPPERA---SAALAAKVLRDS-FLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA 225 (419)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHHHH-HhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE
Confidence 99999999999999988 444444443321 111112235788899988766 5599999888999999999999999
Q ss_pred CCCcEEEEe-CCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecCCCCc-CCCCC--C--cce
Q 035870 244 ADKGCTIVC-GDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRDKRFM-PQNPA--A--WSA 316 (842)
Q Consensus 244 ~~~~v~V~~-~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~-p~~~~--~--~~~ 316 (842)
++++|.++. .+|+++.||+||+|+|++++.++++. +...+.+.+++|.+ .++++.++.+++ +.... . ...
T Consensus 226 ~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 302 (419)
T TIGR03467 226 NAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQ 302 (419)
T ss_pred cCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCcee
Confidence 998865543 46778999999999999999999865 24566778889988 578899998875 32210 0 011
Q ss_pred eeeccc--CCCceEEEEEcccccCC---CC-----CCCCeEEecCCCC---CCcc-eeEEEEcCCCCCCHHHHHHHHhhh
Q 035870 317 WNFLES--FDSKVCLTYWLNVLQNL---GE-----TSLPFLVTLNPDH---VPEH-TLLKWSTGHPVPSVAASKASLELD 382 (842)
Q Consensus 317 ~~~~~~--~~~~~~v~~~~~~l~~l---~~-----~~~~~~~~l~~~~---~~~~-~~~~w~~~~p~~~~~~~~~~~~~~ 382 (842)
|.+... ++....+..++.....+ .+ .+.+.+..+.+.. .+.. .+.+|....+.+.++... .+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ 380 (419)
T TIGR03467 303 WLFDRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNR--LRPG 380 (419)
T ss_pred EEEECCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccc--cCCC
Confidence 333221 12223333333322211 11 0111112222221 1222 344665555555444321 1111
Q ss_pred hhcCCCCeEEeccccCCCC---CchhHhHHHHHHHHhcC
Q 035870 383 HIQGKRGIWFCGAYQGYGF---HEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 383 ~~~~~~~l~~aG~~~g~G~---~e~A~~SG~~aA~~Il~ 418 (842)
..++.++|||||||+..|+ +|+|+.||.++|++|+.
T Consensus 381 ~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 381 ARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 2456789999999887664 38999999999999863
|
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. |
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=255.02 Aligned_cols=391 Identities=17% Similarity=0.217 Sum_probs=234.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+|+|||||+|||+||.+|-+.| .+|+|||+++|+|||++|....+-.+|+|++|+|+.....+.++.++.|........
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~~~t 102 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLLEVT 102 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccceeccC
Confidence 7999999999999999999776 589999999999999999999877999999999976677788999999821111111
Q ss_pred eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC----
Q 035870 81 SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG---- 156 (842)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~---- 156 (842)
.... .+...... ........+...+.++... .....+ ...-..+..|+++++...-
T Consensus 103 g~~~--~~~~~~~~------------~g~~V~~~~~~~~~~~~~~---~~~~~r---~~~~~~~~~SvG~~ln~~~~~~~ 162 (498)
T KOG0685|consen 103 GPAY--VDNFHTRS------------NGEVVPEELLDELNEITVT---LSDKLR---EAEIAHDEGSVGEYLNSEFWDEL 162 (498)
T ss_pred Cccc--cceeEEEe------------cCccCcHHHHHHHHHHHHh---hhhhcc---cccccCccccHHHHHHHHHHHHh
Confidence 0000 00000000 1111122222333333221 111111 1001135678888887520
Q ss_pred -C------CHHHHHHHHHHhhhcccCCCc-hhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhc
Q 035870 157 -Y------SELFQKAYLIPICGSIWSCPS-EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESW 228 (842)
Q Consensus 157 -~------~~~~~~~~~~p~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~ 228 (842)
. ...++..++..+....+.... +.++.++...+..|...++ .......+-|+..+.+-|++.+++.
T Consensus 163 ~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~g------e~~~~~~~kGy~~iL~~l~~~~p~~ 236 (498)
T KOG0685|consen 163 RGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPG------EELLIWNKKGYKRILKLLMAVIPAQ 236 (498)
T ss_pred ccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCc------hhhheechhHHHHHHHHHhccCCCc
Confidence 0 122344444444433333222 2333334444333332221 1134455678999999999988743
Q ss_pred C------ceEEeCCCeeEEEeCC-CcEEEEeCCCcEEeCCEEEEccChHHHHH----hhcCCCChHHHHhccccceee-c
Q 035870 229 G------CQIRTSSEVCSVLPAD-KGCTIVCGDGSREFYNSCVMALHAPDALK----ILGNQATFDETRILGAFQYVY-S 296 (842)
Q Consensus 229 G------~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~A~p~~~~~~----ll~~~~~~~~~~~l~~~~~~~-~ 296 (842)
. .+++++++|.+|..++ +.|.|++.||+.+.|||||||++..++++ ++.|++|..+.+++.++.+++ +
T Consensus 237 ~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~ 316 (498)
T KOG0685|consen 237 NIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVN 316 (498)
T ss_pred chhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccc
Confidence 2 3456669999999986 45999999999999999999999999887 788878889999999999999 6
Q ss_pred eEEEecCCCCcCCCC----CCcce-----------------eeecccCCCceEEEEEccccc-----CCCCC-----CCC
Q 035870 297 DIFLHRDKRFMPQNP----AAWSA-----------------WNFLESFDSKVCLTYWLNVLQ-----NLGET-----SLP 345 (842)
Q Consensus 297 ~v~l~~~~~~~p~~~----~~~~~-----------------~~~~~~~~~~~~v~~~~~~l~-----~l~~~-----~~~ 345 (842)
+++|.|..++||.+- ..|.. ..|......+.++..|+.... .+.+. +..
T Consensus 317 KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~ 396 (498)
T KOG0685|consen 317 KIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTK 396 (498)
T ss_pred eEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHH
Confidence 999999999999861 12211 111111112223333333211 12111 122
Q ss_pred eEEe-cC-CC-CCCcceeE-EEEc---CCCCCC---HHHH----HHHHhhhh---hcCCCCeEEeccccCCCCC---chh
Q 035870 346 FLVT-LN-PD-HVPEHTLL-KWST---GHPVPS---VAAS----KASLELDH---IQGKRGIWFCGAYQGYGFH---EDG 405 (842)
Q Consensus 346 ~~~~-l~-~~-~~~~~~~~-~w~~---~~p~~~---~~~~----~~~~~~~~---~~~~~~l~~aG~~~g~G~~---e~A 405 (842)
.|.. ++ +. ..|..+++ +|.. .+..|+ ++.. +....+.+ ..+.|.|.|||+.|+.-++ .||
T Consensus 397 ~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA 476 (498)
T KOG0685|consen 397 LLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGA 476 (498)
T ss_pred HHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhh
Confidence 2222 12 22 12444444 6732 222222 1111 12222222 2356899999998876655 999
Q ss_pred HhHHHHHHHHhcC
Q 035870 406 LKAGMTAAHGVLG 418 (842)
Q Consensus 406 ~~SG~~aA~~Il~ 418 (842)
+.||.|.|++|+.
T Consensus 477 ~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 477 VLSGWREADRLLE 489 (498)
T ss_pred HHhhHHHHHHHHH
Confidence 9999999999976
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=272.69 Aligned_cols=383 Identities=14% Similarity=0.171 Sum_probs=220.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCC-------chhHH-HHHHHc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVT-------YPNMM-EFFESL 71 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~-------~~~~~-~l~~~l 71 (842)
++|+|||||++||+||++|++.|++|+|||+++++||++.+... .|+.+|.|++++++.. .++.. .+++++
T Consensus 694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ql 773 (1713)
T PLN02976 694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQL 773 (1713)
T ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhc
Confidence 58999999999999999999999999999999999999999875 6889999999996532 12444 467889
Q ss_pred CCCcccccceeeE-eccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHH-HhhhHHHHHHHHhhcCCCCCCccccHH
Q 035870 72 GVDMEMSDMSFSV-SLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREI-IKFKDDVLGYLEELESNPDIDRSETLG 149 (842)
Q Consensus 72 Gl~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (842)
|+........... ....|..+ +......+... ..+......... .......++|++
T Consensus 774 Gl~l~~~~~~~~~yd~~~G~~V-------------------~~e~~~~v~~~fn~lld~~~~~~~---~~g~~a~d~SLg 831 (1713)
T PLN02976 774 GLELTVLNSDCPLYDVVTGEKV-------------------PADLDEALEAEYNSLLDDMVLLVA---QKGEHAMKMSLE 831 (1713)
T ss_pred CCccccccCCCceeEccCCcCC-------------------CHHHHHHHHHHHHHHHHHHHHHHh---hcccCccCCCHH
Confidence 9886554322111 11122211 11111111111 111111100000 000011355666
Q ss_pred HHHHhcCC-------C-----------------------------HHHHHHHHH--------Hhhhcc-c--CCCchhhc
Q 035870 150 QFVNSRGY-------S-----------------------------ELFQKAYLI--------PICGSI-W--SCPSEGVT 182 (842)
Q Consensus 150 ~~l~~~~~-------~-----------------------------~~~~~~~~~--------p~~~~~-~--~~~~~~l~ 182 (842)
+++..... . ......++. -++... + +.+++++
T Consensus 832 d~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eV- 910 (1713)
T PLN02976 832 DGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEV- 910 (1713)
T ss_pred HHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHh-
Confidence 66653210 0 000000100 001110 1 1222222
Q ss_pred cCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC----------CCcEEEEe
Q 035870 183 SFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA----------DKGCTIVC 252 (842)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~----------~~~v~V~~ 252 (842)
++. ++........+ .+..+.++||+++|+++|++.+ .|++|++|++|.+. +++|.|+|
T Consensus 911 --Sl~----~~~qd~~y~~f-gG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtT 978 (1713)
T PLN02976 911 --SLP----YWNQDDVYGGF-GGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVST 978 (1713)
T ss_pred --hhh----hhhcccccccC-CCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEE
Confidence 111 11111111111 2356779999999999999977 59999999999984 45799999
Q ss_pred CCCcEEeCCEEEEccChHHHHH---hhcCCCChHHHHhccccceee-ceEEEecCCCCcCCCCC----C----------c
Q 035870 253 GDGSREFYNSCVMALHAPDALK---ILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNPA----A----------W 314 (842)
Q Consensus 253 ~~G~~~~ad~VV~A~p~~~~~~---ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~----~----------~ 314 (842)
.+|+++.||+||+|+|+.++.. .+.|+++....+++..+.|+. .++++.|+.++|+.... . |
T Consensus 979 sDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~ 1058 (1713)
T PLN02976 979 SNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCF 1058 (1713)
T ss_pred CCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEE
Confidence 9998999999999999999873 355667777788899999998 79999999999986421 1 1
Q ss_pred ceeeecccCCCceEEEEEccccc----CCCCC-----CCCeEEecCC-CC--CCcc-eeEEEEc---CCCCC---CHHHH
Q 035870 315 SAWNFLESFDSKVCLTYWLNVLQ----NLGET-----SLPFLVTLNP-DH--VPEH-TLLKWST---GHPVP---SVAAS 375 (842)
Q Consensus 315 ~~~~~~~~~~~~~~v~~~~~~l~----~l~~~-----~~~~~~~l~~-~~--~~~~-~~~~w~~---~~p~~---~~~~~ 375 (842)
..|+.....+..+++.+..+... .+.+. +...+..+.+ .. .|.. .+++|.. ....| .++..
T Consensus 1059 ~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~ 1138 (1713)
T PLN02976 1059 MFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGAS 1138 (1713)
T ss_pred EeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCC
Confidence 12222211223445554444211 11110 1122222322 11 2322 5668843 22222 22221
Q ss_pred HHHHhhhhhcCCC-CeEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 376 KASLELDHIQGKR-GIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 376 ~~~~~~~~~~~~~-~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
....... ..|.. +|||||+.+ ..|+++||+.||.++|++|+..
T Consensus 1139 ~~d~d~L-AePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1139 GEDYDIL-GRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred chHHHHH-hCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1111111 23444 499999966 4567799999999999999753
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=260.37 Aligned_cols=294 Identities=19% Similarity=0.236 Sum_probs=179.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchh-HHHHHHHcCCCccc--
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPN-MMEFFESLGVDMEM-- 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~-~~~l~~~lGl~~~~-- 77 (842)
+||||||||++||+||..|+++|++|+|||+++++||+++|++.+|+.+|.|+|++.....+. ..++++++|+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 699999999999999999999999999999999999999999999999999999985322233 45888999987431
Q ss_pred -ccceeeEeccCCC-cee-eCCCCCCcchhhhhhccCC--hHHHHHHHHHHhhh---------------HHHHHHHHhhc
Q 035870 78 -SDMSFSVSLEKGH-GCE-WGSRNGLSSLFAQKKNVLN--PYFWQMLREIIKFK---------------DDVLGYLEELE 137 (842)
Q Consensus 78 -~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 137 (842)
.+....+.+.+|. .+. +.+ ......+.....+ ..++..+.+..... ......+....
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d---~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHD---PDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALR 158 (492)
T ss_pred cCCCCcEEEECCCceEeeeecC---HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcC
Confidence 1222333444442 222 211 1111111111110 11222222211100 00000000000
Q ss_pred CC---CCCCccccHHHHHHhcC-CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCC
Q 035870 138 SN---PDIDRSETLGQFVNSRG-YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR 213 (842)
Q Consensus 138 ~~---~~~~~~~s~~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (842)
.. .......|+.+|+++.+ +.+.....++........+.++++.+......++.+.. ...+.++++||
T Consensus 159 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~~GG 230 (492)
T TIGR02733 159 PDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQ--------APHGLWHLHGS 230 (492)
T ss_pred hhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccc--------cCCCceeecCc
Confidence 00 00013578889998763 33333344444332222334444442211111121111 11234669999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCC-----cEEeCCEEEEccChHHHHHhhcC-CCChHHHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDG-----SREFYNSCVMALHAPDALKILGN-QATFDETR 286 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~~~ad~VV~A~p~~~~~~ll~~-~~~~~~~~ 286 (842)
+++|+++|++.++++|++|+++++|++|..+++++ .|.+.+| +++.||+||+|+|+..+.+++++ ..++...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~ 310 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHH
Confidence 99999999999999999999999999999987753 3444443 57899999999999999998874 33445566
Q ss_pred hccccceeec--eEEEecCCC
Q 035870 287 ILGAFQYVYS--DIFLHRDKR 305 (842)
Q Consensus 287 ~l~~~~~~~~--~v~l~~~~~ 305 (842)
.+.++++++. .+++.++..
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred HHhcCCCCCceEEEEEeeccc
Confidence 6777887774 566777664
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=238.95 Aligned_cols=196 Identities=18% Similarity=0.272 Sum_probs=169.0
Q ss_pred CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhc
Q 035870 631 QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV 709 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~ 709 (842)
++|||||||+|.++..+++. ++++|+|+|+|+++++.+++++...|+.++++++..|+.+.+..++||+|+++.+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999988 46899999999999999999999999988999999999766644689999999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
++ +..+|++++++|||||++++.++..... . .....++.. .+++..++.+.+.+ +||++.+.++++.
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--~~~~~~~~~------~~~s~~~~~~~l~~-~Gf~~~~~~~~~~ 147 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLL--S--AIEHEETTS------YLVTREEWAELLAR-NNLRVVEGVDASL 147 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccC--c--ccccccccc------ccCCHHHHHHHHHH-CCCeEEEeEECcH
Confidence 76 8999999999999999999988753221 0 011122222 36789999888887 8999999999999
Q ss_pred cHHHHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 790 HYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 790 ~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+|..++ |..+|.++++++...++|+.|.|+|++|+.+|++ |+.|.+++.|
T Consensus 148 ~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (224)
T smart00828 148 EIANFL--YDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYAL 197 (224)
T ss_pred hHhhhc--cChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEE
Confidence 999876 9999999999999988999999999999999998 9999988764
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=255.87 Aligned_cols=383 Identities=17% Similarity=0.215 Sum_probs=216.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCee-eecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
++|||||||+||||||..|.+.|++|+|||+++|+|||++|.+..+.. +|+|++++++.....+.-+.+++|++.....
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~~ 95 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKVR 95 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccceec
Confidence 589999999999999999999999999999999999999999996665 9999999976444456688899999987755
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHh-----
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNS----- 154 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~----- 154 (842)
....+....+......-.... ...+...+.....+. .............++.+.+..
T Consensus 96 ~~~~l~~~~~~~~~~~~d~~~-----------~~~~~~l~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~ 157 (501)
T KOG0029|consen 96 DTCPLFNENGGESDKVFDDFV-----------EQEFNRLLDDASNLE-------QRLDNEIIGISDDSFGEALEAFLSAS 157 (501)
T ss_pred ccccccccCCcccccccccch-----------hhhhHHHHHHHhhhh-------hhhhhcccccccccHHHHHHhHHHHH
Confidence 444443333211000000000 000001111111100 000000000011112111110
Q ss_pred -----------cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCC-CCceEEecCChhHHHHHHH
Q 035870 155 -----------RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFG-RPQWLTVRWRSHSYVNKVR 222 (842)
Q Consensus 155 -----------~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~L~ 222 (842)
.+.........+ +.+........+.+ + ..++... ..+. ........+|+..++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~--~~~~~~d-----~~~~~~~~~~~~~~G~~~v~~~la 226 (501)
T KOG0029|consen 158 RLMKTLLELLLEGEADKVLQWHL-VNLELTFIAHLENA---S--ARLWDQD-----ELFGGGGIHLLMKGGYEPVVNSLA 226 (501)
T ss_pred HHHHhhHHHhhhhhhhHHHHHHH-HHHHHHhhccHhHh---h--HHhhhhh-----hhcccccchhHhhCCccHHHhhcC
Confidence 010000000000 11111111111111 0 0000000 0111 1134667899999999998
Q ss_pred HHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHHH--h-hcCCCChHHHHhccccceee-ce
Q 035870 223 KQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRILGAFQYVY-SD 297 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~~--l-l~~~~~~~~~~~l~~~~~~~-~~ 297 (842)
+ |.+|+++..|.+|.+.+++ +.|++.++..+.+|+||+|+|..++.. + +.|+++....+++.++.++. .+
T Consensus 227 ~-----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~K 301 (501)
T KOG0029|consen 227 E-----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNK 301 (501)
T ss_pred C-----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeE
Confidence 8 6699999999999998877 455555555599999999999999987 3 45556777799999999999 69
Q ss_pred EEEecCCCCcCCCCCCcce-------------eeecccCCCceEEEEEccccc----CCCC---------CCCCeEEecC
Q 035870 298 IFLHRDKRFMPQNPAAWSA-------------WNFLESFDSKVCLTYWLNVLQ----NLGE---------TSLPFLVTLN 351 (842)
Q Consensus 298 v~l~~~~~~~p~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~l~----~l~~---------~~~~~~~~l~ 351 (842)
+.+.|+..+|+.+...+.. |++......+..+....+... .+.+ .++.+|....
T Consensus 302 v~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~ 381 (501)
T KOG0029|consen 302 VILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEE 381 (501)
T ss_pred EEEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCc
Confidence 9999999999654322211 233322333434443333211 1111 1122333111
Q ss_pred CCCCCcceeEEEEc------CCCCCCHHHHHHH-HhhhhhcCCCC-eEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 352 PDHVPEHTLLKWST------GHPVPSVAASKAS-LELDHIQGKRG-IWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 352 ~~~~~~~~~~~w~~------~~p~~~~~~~~~~-~~~~~~~~~~~-l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
...+.+..+.+|.. .++.+..+..... .++ ..+..+ +||||+++ ..|.++||+.||.++|..|+..
T Consensus 382 ~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l--~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~ 458 (501)
T KOG0029|consen 382 VPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRL--AEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDS 458 (501)
T ss_pred CCCccceeeeeecccccCCccccccCCCCChhHHHHH--hccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHH
Confidence 11112226668854 2222222222221 222 334455 99999977 5666699999999999999753
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=254.09 Aligned_cols=285 Identities=20% Similarity=0.155 Sum_probs=175.6
Q ss_pred EEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc------
Q 035870 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME------ 76 (842)
Q Consensus 3 V~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~------ 76 (842)
|||||||++||+||.+|+++|++|+|||+++++||+++|++.+|+.+|.|++++.. ...+.++++++|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~--~~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM--PEALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc--ccHHHHHHHHcCCChhheEEEE
Confidence 79999999999999999999999999999999999999999999999999999852 2345588888885421
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCC---hHHHHHHHHHHhhhH-HHHH-----------HHHh-hcCCC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLN---PYFWQMLREIIKFKD-DVLG-----------YLEE-LESNP 140 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~-----------~~~~-~~~~~ 140 (842)
..+..+.+.+.+|+.+.+.. .............+ ..+.+.+..+.+... .... .... .....
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQLDVDN--DQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLL 156 (502)
T ss_pred ECCCceEEECCCCCEEEecC--CHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhh
Confidence 12223334445555444432 11111111111111 011111111111110 0000 0000 00000
Q ss_pred CCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHH
Q 035870 141 DIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNK 220 (842)
Q Consensus 141 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 220 (842)
......|+.+|+++....+.+ ..++. .....++.++.+.+. ...++.+.. .....+++.||++.++++
T Consensus 157 ~~~~~~s~~~~~~~~~~~~~l-~~~l~-~~~~~~g~~p~~~~~--~~~l~~~~~--------~~~g~~~~~gG~~~l~~a 224 (502)
T TIGR02734 157 ALLAWRSLYSKVARFFSDERL-RQAFS-FHALFLGGNPFRTPS--IYALISALE--------REWGVWFPRGGTGALVAA 224 (502)
T ss_pred hccCcCCHHHHHHhhcCCHHH-HHHhc-ccceeeccCcccchH--HHHHHHHHH--------hhceEEEcCCCHHHHHHH
Confidence 112467888888877444433 33332 223455666654421 112222211 123456789999999999
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHH-HhhcCCCCh-HHHHhccccceee--
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDAL-KILGNQATF-DETRILGAFQYVY-- 295 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~~~-~~~~~l~~~~~~~-- 295 (842)
|++.++++|++|+++++|++|..++++ +.|++.+|+++.||+||+|+++..+. .++++...+ ...+.+.+++++.
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~ 304 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSL 304 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCee
Confidence 999999999999999999999988776 57889999889999999999987666 455543322 2234445555554
Q ss_pred ceEEEecC
Q 035870 296 SDIFLHRD 303 (842)
Q Consensus 296 ~~v~l~~~ 303 (842)
..+++..+
T Consensus 305 ~~~~lgl~ 312 (502)
T TIGR02734 305 FVLYFGLL 312 (502)
T ss_pred eEEEEeec
Confidence 34566665
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=225.10 Aligned_cols=296 Identities=22% Similarity=0.318 Sum_probs=197.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHc---CCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESL---GVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~l---Gl~~~~~ 78 (842)
+|+||||||+||+||+.|+.+|.+|+||||..-+|||..|.+..+..+|.|+++|.+ ..+.+.++++.+ |+-....
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~-~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP-RDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC-CchHHHHHHHHHHhCCceeecc
Confidence 599999999999999999999999999999999999999999999999999999964 445555555443 2211110
Q ss_pred cceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCC
Q 035870 79 DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYS 158 (842)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (842)
+.. +.+.+ +. .+
T Consensus 82 ~~~----------~~~~~-----------------------------------------------~~-----------~~ 93 (331)
T COG3380 82 PAV----------WTFTG-----------------------------------------------DG-----------SP 93 (331)
T ss_pred ccc----------ccccc-----------------------------------------------CC-----------CC
Confidence 000 00000 00 00
Q ss_pred HHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCe
Q 035870 159 ELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238 (842)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V 238 (842)
+ .....-|.-.-||+.|++.|+..| +|.++++|
T Consensus 94 -------------------~-----------------------~~d~~pyvg~pgmsalak~LAtdL-----~V~~~~rV 126 (331)
T COG3380 94 -------------------P-----------------------RGDEDPYVGEPGMSALAKFLATDL-----TVVLETRV 126 (331)
T ss_pred -------------------C-----------------------CCCCCccccCcchHHHHHHHhccc-----hhhhhhhh
Confidence 0 000111334457889999888866 89999999
Q ss_pred eEEEeCCCcEEEEeCCCc-EEeCCEEEEccChHHHHHhhcC---CCChHHHHhccccceee-ceEEEecCCCCc-CC---
Q 035870 239 CSVLPADKGCTIVCGDGS-REFYNSCVMALHAPDALKILGN---QATFDETRILGAFQYVY-SDIFLHRDKRFM-PQ--- 309 (842)
Q Consensus 239 ~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p~~~~~~ll~~---~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~-p~--- 309 (842)
++|.+.++.|++++++|. ...+|.||+|+|++++..||.+ .++...+..+....|.+ ..++++|+.++. |.
T Consensus 127 t~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~ 206 (331)
T COG3380 127 TEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPGN 206 (331)
T ss_pred hhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCCc
Confidence 999999999999997664 6799999999999999999853 24556788899999999 477888885532 22
Q ss_pred ----CCCCcceeeecc---cCCCceEEEEEccccc--CCC-------CCCCCeEEecCCCCC--Ccc-eeEEEEcCCCCC
Q 035870 310 ----NPAAWSAWNFLE---SFDSKVCLTYWLNVLQ--NLG-------ETSLPFLVTLNPDHV--PEH-TLLKWSTGHPVP 370 (842)
Q Consensus 310 ----~~~~~~~~~~~~---~~~~~~~v~~~~~~l~--~l~-------~~~~~~~~~l~~~~~--~~~-~~~~w~~~~p~~ 370 (842)
....|.+.+... .|.+...+-....... .+. ..+...+..+.+..- |.. ..++|+|++|.-
T Consensus 207 ~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~ 286 (331)
T COG3380 207 FVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPND 286 (331)
T ss_pred ccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhccccccccc
Confidence 233454433221 1334433221111100 011 112333444444322 333 677999999864
Q ss_pred CHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcC
Q 035870 371 SVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~ 418 (842)
....+.. . .+..-+||+|||||+.|-.|+|.+||..+|+.|+.
T Consensus 287 ~~~~~~L----~-ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 287 AVAGPPL----D-ADRELPLYACGDWCAGGRVEGAVLSGLAAADHILN 329 (331)
T ss_pred cccCCcc----c-cCCCCceeeecccccCcchhHHHhccHHHHHHHHh
Confidence 4322211 0 23456999999999888889999999999999975
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=233.20 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=182.2
Q ss_pred CchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCC--cccHHHHHHHHHHHHHHHcCC-----CCCCeEEEeccCc
Q 035870 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSE--DEDLKAAQMRKVSLLIEKARV-----SKGQEVLEIGCGW 640 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l~~-----~~~~~vLDiGcG~ 640 (842)
.+....+++|+.|||..+++|+.+++++|+ .+||+.+ ..++.++|.++++.+++.+.+ +++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 455667889999999999999999998876 5888764 678999999999999999987 7889999999999
Q ss_pred hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHH
Q 035870 641 GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFG 719 (842)
Q Consensus 641 G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~ 719 (842)
|.++..++++.+++|+|+|+|+.|++.|+++++..++.++++++++|+.+++ ++++||+|+++.+++|+++ ...+++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~ 207 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQ 207 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHH
Confidence 9999999998789999999999999999999999888888999999999988 6789999999999999987 789999
Q ss_pred HHHhccccCcEEEEEeecCCCccccc--ccC-----ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHH
Q 035870 720 CCESLLAEDGLLVLQFISIPDERYNE--YRL-----SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYY 792 (842)
Q Consensus 720 ~~~~~LkpgG~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~ 792 (842)
+++++|||||++++.++......... ... ...+...|.+|. +.+..++.+.+++ +||+.+..+++..+..
T Consensus 208 e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~~-aGf~~v~~~d~s~~v~ 284 (340)
T PLN02244 208 ELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAES-LGLQDIKTEDWSEHVA 284 (340)
T ss_pred HHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-CCCCeeEeeeCcHHHH
Confidence 99999999999999876543221110 000 011122333442 3478888888886 8999999999887655
Q ss_pred HHHH
Q 035870 793 QTLR 796 (842)
Q Consensus 793 ~tl~ 796 (842)
+...
T Consensus 285 ~~~~ 288 (340)
T PLN02244 285 PFWP 288 (340)
T ss_pred HHHH
Confidence 5443
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=261.38 Aligned_cols=397 Identities=23% Similarity=0.319 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--CeeeecceEeecCCCchhHHHHHHHcCCCcccccc----eee
Q 035870 10 ISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--GVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM----SFS 83 (842)
Q Consensus 10 iaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~----~~~ 83 (842)
||||+||++|+++|++|+|||+++++|||++|.+.+ |+.+|.|+++++. .++++..+++++|+....... ...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG-MYPNLLNLIDELGLELSLETFPFPQIPF 79 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET-TSHHHHHHHHHHTHHTTEEEEEESSEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccc-cchhhHHHHHHhhhccccccccccccee
Confidence 699999999999999999999999999999999998 9999999999964 667788999999885333211 111
Q ss_pred Eecc-CCCceeeCCCCCCcchhhhhhc-cCC---hHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCC
Q 035870 84 VSLE-KGHGCEWGSRNGLSSLFAQKKN-VLN---PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYS 158 (842)
Q Consensus 84 ~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (842)
.... ......+.. ......... ... ..................................++.+++......
T Consensus 80 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (450)
T PF01593_consen 80 VYWPFGDGRPPWPP----SQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFS 155 (450)
T ss_dssp EEEEEEEEEEEEEE----CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccccccc----ccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 1100 000001000 000000000 000 0000000000000000000000000000000234445555444333
Q ss_pred HHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc---cccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeC
Q 035870 159 ELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL---LQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTS 235 (842)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~ 235 (842)
+.+...++.+............. +.......+..... ........+....|+...+...+++.. |++|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---g~~i~l~ 229 (450)
T PF01593_consen 156 EIFRESLFRPFFFGAFGFLPDES---SAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEEL---GGEIRLN 229 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---THHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHH---GGGEESS
T ss_pred hhhHHHHHHhhhhhhhccccchh---hhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhc---CceeecC
Confidence 33333233333333332222222 11111111111100 012233445666677777766666655 7799999
Q ss_pred CCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHH-hhcCCCChHHHHhccccceee-ceEEEecCCCCcCCCC--
Q 035870 236 SEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALK-ILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNP-- 311 (842)
Q Consensus 236 ~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~-ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~-- 311 (842)
++|++|+.++++|.|++.+|+++.||+||+|+|...+.+ .+.+.++....+++..++|.+ .++++.++.++|+...
T Consensus 230 ~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~ 309 (450)
T PF01593_consen 230 TPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDF 309 (450)
T ss_dssp EEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTE
T ss_pred CcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccc
Confidence 999999999999999999999999999999999999996 444435555678889999998 6889999999887741
Q ss_pred --------CCcceeeec-c-cC--CCceEEEEEcc-c----ccCCCC-----CCCCeEEecCCC-CCCcc---eeEEEEc
Q 035870 312 --------AAWSAWNFL-E-SF--DSKVCLTYWLN-V----LQNLGE-----TSLPFLVTLNPD-HVPEH---TLLKWST 365 (842)
Q Consensus 312 --------~~~~~~~~~-~-~~--~~~~~v~~~~~-~----l~~l~~-----~~~~~~~~l~~~-~~~~~---~~~~w~~ 365 (842)
..+..+... . .+ ++...+..++. . ...+.+ .+.+.+..+.+. ..+++ .+.+|..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~ 389 (450)
T PF01593_consen 310 FGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSR 389 (450)
T ss_dssp SEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTT
T ss_pred cceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccc
Confidence 112111111 1 11 13333433332 1 111111 111222222331 12222 4557765
Q ss_pred -CCCCC--CHHHHHHH--HhhhhhcCC-CCeEEeccccCCC---CCchhHhHHHHHHHHhc
Q 035870 366 -GHPVP--SVAASKAS--LELDHIQGK-RGIWFCGAYQGYG---FHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 366 -~~p~~--~~~~~~~~--~~~~~~~~~-~~l~~aG~~~g~G---~~e~A~~SG~~aA~~Il 417 (842)
.++.. ........ ......++. +||||||+|+..+ .+++|+.||++||++||
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 390 DPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp STTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 33322 11111111 222224555 6999999988544 45999999999999986
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=240.96 Aligned_cols=293 Identities=18% Similarity=0.197 Sum_probs=174.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCC---chh-HHHHHHHcCCCccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT---YPN-MMEFFESLGVDMEM 77 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~---~~~-~~~l~~~lGl~~~~ 77 (842)
||||||||++||+||.+|+++|++|+||||++.+||++++++.+|+.+|.|++++.... .++ +.+++..+|.....
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLET 81 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcccc
Confidence 89999999999999999999999999999999999999999999999999999974321 333 34677777754433
Q ss_pred ccc--eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHH---------------HhhcCCC
Q 035870 78 SDM--SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYL---------------EELESNP 140 (842)
Q Consensus 78 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 140 (842)
... ...+.+.+|..+... .............. |.-.+.+.++..........+ ......+
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~--~d~~~~~~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 82 IPDPVQIHYHLPNGLNVKVH--REYDDFIQELVAKF-PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred cCCCccEEEECCCCeeEeee--cCHHHHHHHHHHHC-chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 222 233444444333322 12222222221111 111111111111110000000 0000000
Q ss_pred ------CCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCC-CchhhccCCHHHHHHHHhhccccccCCCCceEEecCC
Q 035870 141 ------DIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC-PSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR 213 (842)
Q Consensus 141 ------~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (842)
......|+.+++++...++.+. .++.... ..++. ++.+. ++......+.. ...+..+++.||
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~-~~~~~~p~~~~---p~~~~~~~~~~------~~~~g~~~~~gG 227 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDPGLL-KFIDIEC-FCWSVVPADQT---PMINAGMVFSD------RHYGGINYPKGG 227 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCHHHH-HHHHHHH-HhccCCCcccc---hhhhHHHhhcc------cccceEecCCCh
Confidence 0001356777877764445433 3333221 22232 22333 22222211111 122466789999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHH-HhhcCCC-ChHHHHhccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDAL-KILGNQA-TFDETRILGA 290 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~-~~~~~~~l~~ 290 (842)
++.++++|++.++++|++|+++++|++|..++++ +.|++.+|++++||+||+|++++.+. +|++... ++.....+.+
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 9999999999999999999999999999988766 47888899889999999998776555 5776432 2333334445
Q ss_pred cceee--ceEEEecCCCCcC
Q 035870 291 FQYVY--SDIFLHRDKRFMP 308 (842)
Q Consensus 291 ~~~~~--~~v~l~~~~~~~p 308 (842)
+.++. .++++..+....|
T Consensus 308 ~~~s~s~~~~~l~l~~~~~p 327 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADVLP 327 (493)
T ss_pred ccCCCceEEEEEEecCccCC
Confidence 55554 4667777765544
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=219.33 Aligned_cols=403 Identities=18% Similarity=0.181 Sum_probs=239.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
|+|+|+|||+|||+||++|+++|++|||+|+++++||.+.|++. +|...|+|.|.| .+.|.++.+++++++.+....-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f-~~~Y~n~~~ll~~~~~~~~~~~ 79 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVF-FGCYYNLLTLLKELPIEDRLQL 79 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEe-chhHHHHHHHhhhCCchheeeh
Confidence 79999999999999999999999999999999999999999998 899999999999 4699999999999998855432
Q ss_pred ceeeEec-----cCCCceeeCCCCCCcch-----hhhhhccCChHHHHHHHHHHhhhHH---HHHHHHhhcCCCCCCccc
Q 035870 80 MSFSVSL-----EKGHGCEWGSRNGLSSL-----FAQKKNVLNPYFWQMLREIIKFKDD---VLGYLEELESNPDIDRSE 146 (842)
Q Consensus 80 ~~~~~~~-----~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 146 (842)
......+ ..|..-.+..+..+... +-........+ ..+-+.++... ..+.+.. .+..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~g~~~~~~e-------ld~~ 149 (485)
T COG3349 80 REHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRRE---KIRFVLRLGDAPIGADRSLRE-------LDKI 149 (485)
T ss_pred HhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHH---HhHHhhccccccchhHHHHHH-------Hhcc
Confidence 1111111 11111111111111000 00000000111 11111111111 0111111 1789
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCCh-hHHHHHHHHHh
Q 035870 147 TLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRS-HSYVNKVRKQL 225 (842)
Q Consensus 147 s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~L~~~l 225 (842)
|+.+|+++++.++......+.|+........++..+..........+.... ........++|++ ..+...+.+.+
T Consensus 150 s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~----~~~~i~~~~~g~~~E~~~~p~~~yi 225 (485)
T COG3349 150 SFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT----LEASILRNLRGSPDEVLLQPWTEYI 225 (485)
T ss_pred cHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----cCcchhhhhcCCCcceeeehhhhhc
Confidence 999999999888888888899998888888888885544444333332211 1122333445554 35778899999
Q ss_pred hhcCceEEeCCCeeEEEeCCCc-----EEEEeCCCc---EEeCCEEEEccChHHHHHhhcCCCC-hHHHHhccccceee-
Q 035870 226 ESWGCQIRTSSEVCSVLPADKG-----CTIVCGDGS---REFYNSCVMALHAPDALKILGNQAT-FDETRILGAFQYVY- 295 (842)
Q Consensus 226 ~~~G~~i~~~~~V~~I~~~~~~-----v~V~~~~G~---~~~ad~VV~A~p~~~~~~ll~~~~~-~~~~~~l~~~~~~~- 295 (842)
++.|.+++.+.+|+.|..+... +.+... +. ...++.++.+........+++.... +...+.+..+...+
T Consensus 226 ~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~ 304 (485)
T COG3349 226 PERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPV 304 (485)
T ss_pred cccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccce
Confidence 9999999999999999887621 344443 43 3456667777777777777776554 55567777777777
Q ss_pred ceEEEecCCCCcCCCC---CCcce-eeecccCCCceEEE-------EEcc--cccC-----------CCCC-------CC
Q 035870 296 SDIFLHRDKRFMPQNP---AAWSA-WNFLESFDSKVCLT-------YWLN--VLQN-----------LGET-------SL 344 (842)
Q Consensus 296 ~~v~l~~~~~~~p~~~---~~~~~-~~~~~~~~~~~~v~-------~~~~--~l~~-----------l~~~-------~~ 344 (842)
.++.+.++...++... ..|.. -.++..+.. .++. .+.+ ..+. +.+. ..
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~-~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e 383 (485)
T COG3349 305 ITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLG-GVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFE 383 (485)
T ss_pred eEEEEeecCccccccccchhhhhhccccccccCC-ceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHH
Confidence 5778888754332221 11111 001111110 0000 0000 0000 0000 01
Q ss_pred CeEEecCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcCCc
Q 035870 345 PFLVTLNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 345 ~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
.....+.|...... .........+.+...+.....++...++.+|++++|||+ ..+.+|+|..||+++|+.|++..
T Consensus 384 ~~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 384 KELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred HHhhhcCCchhcccccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence 11111222111111 111222234444444455556666778899999999998 45666999999999999998643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=202.32 Aligned_cols=193 Identities=22% Similarity=0.341 Sum_probs=155.4
Q ss_pred chHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHH
Q 035870 569 TLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIV 648 (842)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (842)
......++|+..||..|+..++.++. ..-+.+++.+...+|.+|||||||||.++..++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~---------------------~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~ 70 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHR---------------------LWRRALISLLGIKPGDKVLDVACGTGDMALLLA 70 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchH---------------------HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence 45667889999999999888875552 333567777788899999999999999999999
Q ss_pred Hh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccc
Q 035870 649 KR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA 726 (842)
Q Consensus 649 ~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lk 726 (842)
+. ..++|+|+|+|+.|++.|++++.+.+..+ ++|+++|++++| ++.+||+|.+.+.|+++++ .+.+|++++|+||
T Consensus 71 k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlK 147 (238)
T COG2226 71 KSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLK 147 (238)
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhc
Confidence 98 45799999999999999999999988875 999999999999 9999999999999999987 8999999999999
Q ss_pred cCcEEEEEeecCCCcccccccCccchhhhcccC-------------------CCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 727 EDGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-------------------GGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 727 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
|||++++.++..+....-.. ....|..+++.| .-..|+.+++.+.+++ +||+.+..+++
T Consensus 148 pgG~~~vle~~~p~~~~~~~-~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~-~gf~~i~~~~~ 225 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRK-AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEK-AGFEEVRYENL 225 (238)
T ss_pred CCeEEEEEEcCCCCchhhHH-HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHh-cCceEEeeEee
Confidence 99999999998876431110 011122222222 1236888888888877 89987665553
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=214.59 Aligned_cols=259 Identities=23% Similarity=0.282 Sum_probs=153.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcC-CCccc--
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLG-VDMEM-- 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lG-l~~~~-- 77 (842)
+||||||||++||+||.+|+++|++|+||||++++||+++|.+.+||.+|+|++++.. +....++++++ ++...
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~---~~~~~~~~~l~~l~~~~l~ 80 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLM---PDPGPLFRELGNLDADGLD 80 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeec---CchHHHHHHhccCccccee
Confidence 5899999999999999999999999999999999999999999999999999988843 23335566666 43332
Q ss_pred ---ccceeeEeccCCCceeeCC-CCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCC-----------
Q 035870 78 ---SDMSFSVSLEKGHGCEWGS-RNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDI----------- 142 (842)
Q Consensus 78 ---~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 142 (842)
.+..+.+.+.+|..+.... .......+..........+...+..+.+... ............
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 157 (487)
T COG1233 81 LLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYE---LLAALLLAPPRSELLLVPDTPER 157 (487)
T ss_pred eeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhH---HHHhhcCCCchhhhhhccccHHH
Confidence 2222333444444433321 1111111110000001111111111111100 011100000000
Q ss_pred ------CccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhH
Q 035870 143 ------DRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHS 216 (842)
Q Consensus 143 ------~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 216 (842)
....+..+++... +.+......+.......+ .++...+ .+..++... ....++++++||++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~~~~~~--------~~~~G~~~p~GG~~a 225 (487)
T COG1233 158 LLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP--ALYLLLSHL--------GLSGGVFYPRGGMGA 225 (487)
T ss_pred HHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh--HHHHHHHHh--------cccCCeeeeeCCHHH
Confidence 0223445555554 443333333322211111 2332221 112222221 134578899999999
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHHHhhc
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~ 277 (842)
++++|++.++++|++|+++++|++|..++++ ++|++.+|+.+.+|.||+++.......+.+
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 9999999999999999999999999998874 788888887899999999987744444443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=201.27 Aligned_cols=150 Identities=26% Similarity=0.353 Sum_probs=94.0
Q ss_pred chHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHH
Q 035870 569 TLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIV 648 (842)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (842)
..+.-.+.|+..||..|++.++..+..+. +.+++.+...+|.+|||+|||+|.++..++
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr---------------------~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~ 66 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWR---------------------RKLIKLLGLRPGDRVLDVACGTGDVTRELA 66 (233)
T ss_dssp --------------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHG
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHH---------------------HHHHhccCCCCCCEEEEeCCChHHHHHHHH
Confidence 34556788999999999888776653321 245566678899999999999999999999
Q ss_pred Hh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhcc
Q 035870 649 KR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLL 725 (842)
Q Consensus 649 ~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~L 725 (842)
++ +..+|+|+|+|++|++.|+++++..+.. +|+++++|++++| ++++||+|++.+.++++++ +...+++++|+|
T Consensus 67 ~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVL 143 (233)
T PF01209_consen 67 RRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD--RERALREMYRVL 143 (233)
T ss_dssp GGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHE
T ss_pred HHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHc
Confidence 87 3579999999999999999999998876 8999999999999 7899999999999999987 899999999999
Q ss_pred ccCcEEEEEeecCCCcc
Q 035870 726 AEDGLLVLQFISIPDER 742 (842)
Q Consensus 726 kpgG~~~~~~~~~~~~~ 742 (842)
||||++++.+++.|...
T Consensus 144 kPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 144 KPGGRLVILEFSKPRNP 160 (233)
T ss_dssp EEEEEEEEEEEEB-SSH
T ss_pred CCCeEEEEeeccCCCCc
Confidence 99999999999988753
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=192.95 Aligned_cols=208 Identities=17% Similarity=0.276 Sum_probs=167.2
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++... .+++++.++|+.+.+ ++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCC
Confidence 457888899999999999999999999999887788999999999999999998754 247999999998877 6689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~ 775 (842)
||+|++..+++|++.+++..++++++++|||||++++.++...... .. ..-...++- ....+++..++.+.+++
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NW---DEEFKAYIKKRKYTLIPIQEYGDLIKS 192 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--Cc---HHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999866689999999999999999999887654321 00 001111111 12245788999888887
Q ss_pred cCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHH----HHHHHHHHHHHhccc
Q 035870 776 ASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIR----TWEYYFDYCAAGFKS 835 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r----~w~~y~~~~~~~f~~ 835 (842)
+||+++..+++..++...+..-.+.++++.+++.+. |+++... .|...+..|..|-..
T Consensus 193 -aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (263)
T PTZ00098 193 -CNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKEYNSLKDGWTRKIKDTKRKLQK 254 (263)
T ss_pred -CCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHHHHHHHHHHHHHHHHhhccccc
Confidence 899999999999988888888889999999999886 6655332 478888888777543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-20 Score=207.64 Aligned_cols=192 Identities=18% Similarity=0.224 Sum_probs=159.1
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++.. +...++++.++|+.+.+ ++++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC
Confidence 35677777788899999999999999999998878899999999999999998875 44457999999998877 6678
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~ 775 (842)
||+|+|..+++|+++ +..++++++++|||||++++.++....... ...+..++. .+..+++..++.+.+.+
T Consensus 333 fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~l~~ 404 (475)
T PLN02336 333 FDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTP------SPEFAEYIKQRGYDLHDVQAYGQMLKD 404 (475)
T ss_pred EEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999999987 889999999999999999998876543211 111222222 34567899999888887
Q ss_pred cCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHHH
Q 035870 776 ASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRT 821 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~ 821 (842)
+||++..+++++.+|..++..|.+.+.++.++.... +++.....
T Consensus 405 -aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 448 (475)
T PLN02336 405 -AGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYND 448 (475)
T ss_pred -CCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHH
Confidence 899999999999999999999999999999998775 66655443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-20 Score=188.47 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=126.0
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHH--cCCCCCeEEEEccccCCc-cCC
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKE--AGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~--~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
+++.+.++++.+|||+|||+|.++..+++.. .++|+|+|+|++|++.|+++... ....++++++++|+.+++ +++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 4456677889999999999999999998863 36999999999999999987642 222347999999999998 678
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-ccCC--------------
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-IFPG-------------- 760 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~p~-------------- 760 (842)
+||.|+++.+++|+++ +..++++++|+|||||++++.++..+...+.... ..|..+. +.|.
T Consensus 145 sfD~V~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~ 220 (261)
T PLN02233 145 YFDAITMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLK 220 (261)
T ss_pred CEeEEEEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHH
Confidence 9999999999999976 8999999999999999999999887654321110 0111111 1110
Q ss_pred ---CCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 761 ---GCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 761 ---~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
..+++..++.+.+++ +||+.....+++
T Consensus 221 ~s~~~f~s~~el~~ll~~-aGF~~~~~~~~~ 250 (261)
T PLN02233 221 SSINEYLTGEELEKLALE-AGFSSAKHYEIS 250 (261)
T ss_pred HHHHhcCCHHHHHHHHHH-CCCCEEEEEEcC
Confidence 236789999888886 899987776654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=189.27 Aligned_cols=165 Identities=22% Similarity=0.398 Sum_probs=128.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
.++.+|||||||+|.++..+++. +++|+|||+|+++++.|+++....+...+++++++|+.+++ .+++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 46789999999999999999875 89999999999999999998776665568999999999887 56799999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC----CCCCHHHHHHHHhhcCCcEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG----CLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~~~~~~~~~~~~gf~v~ 782 (842)
||+.+ +..++++++++|||||.+++.++......|........++.+++.++. .+.+.+++.+.+++ +||++.
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~-aGf~i~ 285 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR-ASVDVK 285 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH-cCCeEE
Confidence 99987 799999999999999999998876543222111112233444444433 25689999988887 899988
Q ss_pred EEEecCccHHHHHHHH
Q 035870 783 QVENIGIHYYQTLRCW 798 (842)
Q Consensus 783 ~~~~~~~~y~~tl~~w 798 (842)
++. |..|.+....|
T Consensus 286 ~~~--G~~~~p~~~~w 299 (322)
T PLN02396 286 EMA--GFVYNPITGRW 299 (322)
T ss_pred EEe--eeEEcCcCCeE
Confidence 764 44455544444
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=168.77 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=128.8
Q ss_pred HHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 571 TQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 571 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
..-+++++..||..||...+...+- ..+..+.+++..+++++||++||||.++..+.++
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHRl---------------------WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHRL---------------------WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHH---------------------HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHh
Confidence 3446789999999999988755422 2256778999999999999999999999999887
Q ss_pred -cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC--eEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHH
Q 035870 651 -TG------CKYTGITLSEEQLKYAEMKVKEAGLQDL--IRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGC 720 (842)
Q Consensus 651 -~~------~~v~gid~s~~~~~~a~~~~~~~~l~~~--v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~ 720 (842)
.. .+|+++|+|++|++.+++|.++.++.+. +.++++|++++| ++.+||..++.+.|..+++ ++..+++
T Consensus 122 v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--~~k~l~E 199 (296)
T KOG1540|consen 122 VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--IQKALRE 199 (296)
T ss_pred hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC--HHHHHHH
Confidence 33 6899999999999999999988888665 999999999999 8899999999999999988 8999999
Q ss_pred HHhccccCcEEEEEeecCCC
Q 035870 721 CESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 721 ~~~~LkpgG~~~~~~~~~~~ 740 (842)
++|+|||||++.+..+....
T Consensus 200 AYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHhcCCCcEEEEEEccccc
Confidence 99999999999998887655
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=174.44 Aligned_cols=158 Identities=25% Similarity=0.429 Sum_probs=124.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
-+|.+|||||||-|.++..+|+. |++|||+|+|+++++.|+....+.|+ ++++.+...+++. ..++||+|+|.+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999998 89999999999999999999999887 4778888888887 44899999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCC-----CCCHHHHHHHHhhcCCcEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGC-----LPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~-----~~~~~~~~~~~~~~~gf~v 781 (842)
||+++ +..+++.+.+++||||.++++++......+-.......++-+ ++|.+. +-..+|+...+.. +++.+
T Consensus 135 EHv~d--p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~-~~~~~ 210 (243)
T COG2227 135 EHVPD--PESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLG-ANLKI 210 (243)
T ss_pred HccCC--HHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhccc-CCceE
Confidence 99988 889999999999999999999988654433222222333333 445543 3456777776665 68877
Q ss_pred EEEEecCccHHHH
Q 035870 782 EQVENIGIHYYQT 794 (842)
Q Consensus 782 ~~~~~~~~~y~~t 794 (842)
.+.. |.+|.+-
T Consensus 211 ~~~~--g~~y~p~ 221 (243)
T COG2227 211 IDRK--GLTYNPL 221 (243)
T ss_pred Eeec--ceEeccc
Confidence 6654 3445443
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=178.46 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=142.7
Q ss_pred HHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 571 TQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 571 ~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
+.-.+.++.+||..+.+.....+ ....+.+++.+.++++.+|||+|||+|.++..+++.
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~---------------------~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~ 66 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRH---------------------KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEA 66 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCch---------------------HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHH
Confidence 44566777788766655432111 222356778888899999999999999999999987
Q ss_pred --cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 651 --TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 651 --~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
++.+|+|+|+|+++++.|+++++..+++ +++++++|..+++ ++++||+|++..+++|+++ +..+++++.++|||
T Consensus 67 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 67 VGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD--YMQVLREMYRVVKP 143 (231)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEecccccCCC--HHHHHHHHHHHcCc
Confidence 3579999999999999999999887774 8999999998887 6689999999999999976 78999999999999
Q ss_pred CcEEEEEeecCCCcccccccCccchhhhcccC-------------------CCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 728 DGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-------------------GGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 728 gG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-------------------~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
||++++.+...+.... +.....+..+++.| ...+|+..++.+.+++ +||++.+++.+.
T Consensus 144 gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~~~~~~~~ 220 (231)
T TIGR02752 144 GGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQE-AGFKDVEVKSYT 220 (231)
T ss_pred CeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-cCCCeeEEEEcc
Confidence 9999987765544321 00000000000000 1235788999888886 899988877654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=176.05 Aligned_cols=363 Identities=12% Similarity=0.115 Sum_probs=211.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCee-eecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD-LDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
.||+|||||+|||++|++|++.|.+|+|+|+++.+||++.+....|.. .+.|+|+++. ..+.+.+++.++.- .....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~~~-~~~~~ 79 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT-NNQYVWDYISPFFE-LNNYQ 79 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec-CcHHHHHHHHhhcc-cccee
Confidence 389999999999999999999999999999999999999988777654 4899999964 56778888777531 11111
Q ss_pred ceeeEeccCCCceeeCCCC-CCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHH---Hhc
Q 035870 80 MSFSVSLEKGHGCEWGSRN-GLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFV---NSR 155 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l---~~~ 155 (842)
.. .....+|+.+.++-.. .+..++ .......+.+.+. ......... +..++.+|. ...
T Consensus 80 ~~-~~~~~~g~~~~~P~~~~~i~~l~-------~~~~~~~~~~~l~------~~~~~~~~~----~~~~~~e~~d~~~~~ 141 (377)
T TIGR00031 80 HR-VLALYNNLDLTLPFNFNQFRKLL-------GVKDAQELQNFFN------AQFKYGDHV----PLEELQEIADPDIQL 141 (377)
T ss_pred EE-EEEEECCeEEccCCCHHHHHHhc-------ccchHHHHHHHHH------HHhhcccCC----CCCCHHHHHHHHHHH
Confidence 11 2334556666555421 121111 1111111111111 000000000 124555555 555
Q ss_pred CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc--cccccCCCCceEEecCChhHHHHHHHHHhhhcCceEE
Q 035870 156 GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH--HLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIR 233 (842)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~ 233 (842)
+++.+.+.++.|+..+.|+.++++++ +..+. .+... .-...+.......|++|...+++.|++.- +.+|+
T Consensus 142 -~G~~lye~ff~~Yt~K~Wg~~p~el~---~~~~~-RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~---~i~v~ 213 (377)
T TIGR00031 142 -LYQFLYQKVYKPYTVKQWGLPAEEID---PFVIG-RVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP---LIDVK 213 (377)
T ss_pred -HHHHHHHHhccccCceeeCCChHHCC---HHHeE-ecceEecCCCCcccccccccccccHHHHHHHHHhcC---CCEEE
Confidence 88999999999999999999999983 33221 11110 00123344556778999999999998764 67899
Q ss_pred eCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeeceEEEec-CCCCcCCCCC
Q 035870 234 TSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFLHR-DKRFMPQNPA 312 (842)
Q Consensus 234 ~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~v~l~~-~~~~~p~~~~ 312 (842)
+|+.+..++.++++|.+. ++ .+. +.||.|.|.+.+.+ ....+++|.+..+...+ +.....
T Consensus 214 l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f~-----------~~~g~L~yrsl~f~~e~~~~~~~q---- 274 (377)
T TIGR00031 214 LNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLFG-----------YRFGALQYRSLKFEWERHEFKNFQ---- 274 (377)
T ss_pred eCCccceeeccccceeec--cc-ccc-CcEEEecCchHHHh-----------hccCcccceeEEEEEEEeccccCC----
Confidence 999888888655545443 23 233 88999988775543 34567788875443332 222111
Q ss_pred CcceeeecccCCCceEEEEEcccccCCCCCCCCeEEecCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhhh-cCCCCe
Q 035870 313 AWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDHI-QGKRGI 390 (842)
Q Consensus 313 ~~~~~~~~~~~~~~~~v~~~~~~l~~l~~~~~~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~~-~~~~~l 390 (842)
.....+|+ ..-...-++.+-+-...-.+ ..+. .. .-|.. ....+...+|.++...........++ ...+||
T Consensus 275 ~~~~vnyp-~~~~~tRI~e~k~f~~~~~~--~t~i---~~-E~~~~~~~~~~~pyYpi~~~~~~~~~~~y~~la~~~~~v 347 (377)
T TIGR00031 275 GYAVVNFP-LNVPITRIVEYKHLTYVGSK--QTIV---SK-EYPGEWKVGDPEPYYPVNDNKNMALFKKYLELASREDNL 347 (377)
T ss_pred CCeEEEcC-CCCCcceEEeeecCCCCCCC--CeEE---Ee-ecchhhcCCCceeeeeccCHHHHHHHHHHHHHHhcCCCE
Confidence 11122333 11111222222111110000 0011 00 00111 01122456788888777766666553 334699
Q ss_pred EEeccccCCCCC--chhHhHHHHHHHHhc
Q 035870 391 WFCGAYQGYGFH--EDGLKAGMTAAHGVL 417 (842)
Q Consensus 391 ~~aG~~~g~G~~--e~A~~SG~~aA~~Il 417 (842)
+|+|.+..+.+. +.|+.+|..+|++++
T Consensus 348 ~~~GRlg~y~Y~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 348 ILLGRLAEYQYYDMDQAILAALYKAEQLL 376 (377)
T ss_pred EEeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence 999995544443 999999999999864
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=173.20 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.+.++.+++.+. .++.+|||||||+|.++..+++. +.+|+++|+|++|++.|++++...++.++++++++|+.+++
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh
Confidence 344567777776 55679999999999999999997 88999999999999999999999988778999999998875
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchhh--------hcccCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFIK--------EYIFPGGCL 763 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~i~p~~~~ 763 (842)
.+++||+|++..+++|+.+ +..+++++.++|||||++++..+......+..... ...... ....|. ..
T Consensus 109 ~~~~fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 185 (255)
T PRK11036 109 LETPVDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YP 185 (255)
T ss_pred cCCCCCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CC
Confidence 4679999999999999976 78999999999999999998765543211111000 000010 111222 23
Q ss_pred CCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 764 PSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 764 ~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
.+.+++.+.+++ +||+++...-++
T Consensus 186 ~~~~~l~~~l~~-aGf~~~~~~gi~ 209 (255)
T PRK11036 186 LDPEQVYQWLEE-AGWQIMGKTGVR 209 (255)
T ss_pred CCHHHHHHHHHH-CCCeEeeeeeEE
Confidence 467888888876 899998765543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=166.84 Aligned_cols=151 Identities=23% Similarity=0.385 Sum_probs=119.5
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEccccCCccCCCccEEEEcc
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----LIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
|++|||+|||+|.+++.||+. |++|+|||+|+++++.|++......... ++++.+.|.+... ++||.|+|.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 488999999999999999997 9999999999999999999855444322 3677778888776 6799999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCC----CCCHHHHHHHHhhcCCcE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGC----LPSLSRITSAMSVASRLC 780 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~----~~~~~~~~~~~~~~~gf~ 780 (842)
++||+.+ ++++++.+.++|||+|.+++.++...-..+.......+.+.+.+.+|.+ ++++.++...+.. .+++
T Consensus 167 vleHV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~-~~~~ 243 (282)
T KOG1270|consen 167 VLEHVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA-NGAQ 243 (282)
T ss_pred HHHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh-cCcc
Confidence 9999976 9999999999999999999999886654333322334445553444443 5788999888877 6888
Q ss_pred EEEEEe
Q 035870 781 VEQVEN 786 (842)
Q Consensus 781 v~~~~~ 786 (842)
+..+..
T Consensus 244 v~~v~G 249 (282)
T KOG1270|consen 244 VNDVVG 249 (282)
T ss_pred hhhhhc
Confidence 776543
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=175.79 Aligned_cols=251 Identities=12% Similarity=0.147 Sum_probs=151.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCC--------------------eeeecceEeecCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG--------------------VDLDLGFMVFNRVTY 61 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g--------------------~~~d~G~~~~~~~~~ 61 (842)
||||||+|++|+.+|..|+++|++|+++|+++..||+++|.+..+ +.+|+.++++. ..
T Consensus 6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~--~~ 83 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM--AS 83 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee--cC
Confidence 799999999999999999999999999999999999999974322 34566666663 33
Q ss_pred hhHHHHHHHcCCCcccccc--eeeEec-cCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhh-c
Q 035870 62 PNMMEFFESLGVDMEMSDM--SFSVSL-EKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEEL-E 137 (842)
Q Consensus 62 ~~~~~l~~~lGl~~~~~~~--~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (842)
..+.+++.+.++....... .-...+ .+|+....+. .-...+. ...+... ..+.+.+|.....++.... .
T Consensus 84 G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~--s~~~~~~--s~ll~l~---eKr~l~kfl~~v~~~~~~~~~ 156 (443)
T PTZ00363 84 GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPA--TDMEALS--SPLMGFF---EKNRCKNFLQYVSNYDENDPE 156 (443)
T ss_pred ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCC--CHHHHhh--CCCcchh---hHHHHHHHHHHHHhhccCChh
Confidence 5666888888877654321 111222 3444333221 1111111 1111111 1222233332222221110 0
Q ss_pred CCCCC-CccccHHHHHHhcCCCHHHHHHHH---HHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCC
Q 035870 138 SNPDI-DRSETLGQFVNSRGYSELFQKAYL---IPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR 213 (842)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 213 (842)
..... .+..|+.+|+++.++++...+.+. .......+...+... ....+..+... ...++...+.++.||
T Consensus 157 ~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~---tl~ri~~y~~S---~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 157 THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIE---TVMRIKLYMDS---LSRYGKSPFIYPLYG 230 (443)
T ss_pred hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHH---HHHHHHHHHHH---HhhccCCcceeeCCC
Confidence 01111 146899999999999887655322 221111121111110 11112223221 112233446778999
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEcc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMAL 267 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~ 267 (842)
++.|+++|++.+...|++++++++|++|..++++ +.|++++|+++.|+.||+..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 9999999999998899999999999999987644 67999999999999999864
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=168.82 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 614 q~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
+.+....+++.+...++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++ +++++++|+.+++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 85 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK 85 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC
Confidence 3445567888888889999999999999999999987 578999999999999999763 5789999998877
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc----ccCccchhhh---ccc-CCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE----YRLSSDFIKE---YIF-PGGCLP 764 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~----~~~~~~~~~~---~i~-p~~~~~ 764 (842)
++++||+|+|+.+++|+++ +..++++++++|||||++++............ ......|... ..+ .+..++
T Consensus 86 ~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 163 (255)
T PRK14103 86 PKPDTDVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQ 163 (255)
T ss_pred CCCCceEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCC
Confidence 6679999999999999986 79999999999999999999754321111100 0001112211 111 123467
Q ss_pred CHHHHHHHHhhcCCcEEEEEEe
Q 035870 765 SLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
+..++.+.+.+ +||++...+.
T Consensus 164 ~~~~~~~~l~~-aGf~v~~~~~ 184 (255)
T PRK14103 164 TPAGYAELLTD-AGCKVDAWET 184 (255)
T ss_pred CHHHHHHHHHh-CCCeEEEEee
Confidence 88999888887 8998655443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=165.46 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 612 AAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 612 ~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
-+..-+...++..+...++++|||||||+|.++..++......|+|+|+|+.|+..++...+..+...++.+..+|+.++
T Consensus 104 ~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 104 WRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 33345566788888878899999999999999999988733479999999999887654333223334789999999998
Q ss_pred ccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHH
Q 035870 692 AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITS 771 (842)
Q Consensus 692 ~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~ 771 (842)
+...+||+|+|+++++|+++ +..++++++++|||||.+++.+................+ .+. .-...+|+..++..
T Consensus 184 p~~~~FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-~k~-~nv~flpS~~~L~~ 259 (314)
T TIGR00452 184 HELYAFDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-AKM-KNVYFIPSVSALKN 259 (314)
T ss_pred CCCCCcCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-Hhc-cccccCCCHHHHHH
Confidence 85568999999999999976 889999999999999999998765443221111000001 110 00013579999988
Q ss_pred HHhhcCCcEEEEEEecCcc--HHHHHHHHH
Q 035870 772 AMSVASRLCVEQVENIGIH--YYQTLRCWR 799 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~~~~--y~~tl~~w~ 799 (842)
.+++ +||+.+.+.+.... ......+|.
T Consensus 260 ~L~~-aGF~~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 260 WLEK-VGFENFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred HHHH-CCCeEEEEEeccCCCHHHhhhhhhh
Confidence 8876 89998887765443 223344554
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=157.60 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=117.4
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+++++.++++++..++. ++++.+.|+.+++.+++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCE
Confidence 4556666667889999999999999999997 889999999999999999999988875 69999999987764568999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+++.+++|++.+....+++++.++|||||++++.....++... ... -+| ...+.+++.+.+. ||
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--~~~--------~~~--~~~~~~el~~~~~---~~ 163 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTV--------GFP--FAFKEGELRRYYE---GW 163 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--CCC--------CCC--CccCHHHHHHHhC---CC
Confidence 99999999998777999999999999999997664433322110 000 011 2346777765543 89
Q ss_pred EEEEEEe
Q 035870 780 CVEQVEN 786 (842)
Q Consensus 780 ~v~~~~~ 786 (842)
++...++
T Consensus 164 ~~~~~~~ 170 (197)
T PRK11207 164 EMVKYNE 170 (197)
T ss_pred eEEEeeC
Confidence 8877643
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=167.50 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
..+.+.++..+...++.+|||||||+|.++..+++....+|+|+|+|+.++..++......+...+++++.+|+.+++.+
T Consensus 108 ~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~ 187 (322)
T PRK15068 108 DWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL 187 (322)
T ss_pred HhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc
Confidence 34556677777766789999999999999999998844579999999999877655444333345799999999998866
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG-GCLPSLSRITSAM 773 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~~ 773 (842)
++||+|+|.++++|+.+ +..+++++++.|||||.+++.++..+............+ . -+++ ..+|+..++.+.+
T Consensus 188 ~~FD~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~--~~~~~~~lps~~~l~~~L 262 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-A--KMRNVYFIPSVPALKNWL 262 (322)
T ss_pred CCcCEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-h--cCccceeCCCHHHHHHHH
Confidence 78999999999999976 889999999999999999998765443221110000000 0 0111 1368999999888
Q ss_pred hhcCCcEEEEEEecCc
Q 035870 774 SVASRLCVEQVENIGI 789 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~~ 789 (842)
.+ +||+++.+.+...
T Consensus 263 ~~-aGF~~i~~~~~~~ 277 (322)
T PRK15068 263 ER-AGFKDVRIVDVSV 277 (322)
T ss_pred HH-cCCceEEEEeCCC
Confidence 87 8999988887654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-17 Score=144.68 Aligned_cols=107 Identities=26% Similarity=0.407 Sum_probs=93.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCccCCCccEEEEcc-h
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLAKANKYDRIISCE-M 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~~~fD~i~s~~-~ 705 (842)
|+.+|||||||+|.++..+++. ++++|+|+|+|+++++.|++++.+.+..++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 6789999999999999999995 79999999999999999999998888888999999999 4444457899999999 5
Q ss_pred hhhcCh-hhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGH-EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++++.+ +...++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554432 468899999999999999999965
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=164.87 Aligned_cols=166 Identities=21% Similarity=0.239 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc
Q 035870 611 KAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689 (842)
Q Consensus 611 ~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 689 (842)
...|.+..+.+++.+.+.++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++. .++.++.+|+.
T Consensus 13 ~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~ 86 (258)
T PRK01683 13 EDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIA 86 (258)
T ss_pred HHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchh
Confidence 3445566778888888889999999999999999999987 5789999999999999999874 26899999998
Q ss_pred CCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccc----ccccCccchhhhcccCC---CC
Q 035870 690 QLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERY----NEYRLSSDFIKEYIFPG---GC 762 (842)
Q Consensus 690 ~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~p~---~~ 762 (842)
++.+.++||+|+++.+++|+++ ...+++++.++|||||.++++......... ........|...+..++ ..
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 164 (258)
T PRK01683 87 SWQPPQALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAP 164 (258)
T ss_pred ccCCCCCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcC
Confidence 8765579999999999999986 789999999999999999996432211110 01111223444443333 45
Q ss_pred CCCHHHHHHHHhhcCCcEEEEEE
Q 035870 763 LPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 763 ~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
+|+..++.+.+.+ +|+.+...+
T Consensus 165 ~~~~~~~~~~l~~-~g~~v~~~~ 186 (258)
T PRK01683 165 LPPPHAYYDALAP-AACRVDIWH 186 (258)
T ss_pred CCCHHHHHHHHHh-CCCceeeee
Confidence 6788888888887 788764433
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=165.13 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=122.4
Q ss_pred HHHHHcCC-CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 620 LLIEKARV-SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 620 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+++.+.+ .++.+|||||||+|.++..+++. .+.+|+++|+|++|++.|+++... .+++++.+|+.+++ ++++
T Consensus 103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~s 178 (340)
T PLN02490 103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDY 178 (340)
T ss_pred HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCc
Confidence 45555554 46889999999999999999887 467999999999999999988642 26889999999887 6689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
||+|+++.+++|+++ ....+++++++|||||++++.....+..+... .+...+ ...++.+++.+.+++
T Consensus 179 FDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r-----~~~~~~----~~~~t~eEl~~lL~~- 246 (340)
T PLN02490 179 ADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSR-----FFADVW----MLFPKEEEYIEWFTK- 246 (340)
T ss_pred eeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHHH-----Hhhhhh----ccCCCHHHHHHHHHH-
Confidence 999999999999987 67899999999999999988654433211110 000111 124688999988887
Q ss_pred CCcEEEEEEecCccHHH
Q 035870 777 SRLCVEQVENIGIHYYQ 793 (842)
Q Consensus 777 ~gf~v~~~~~~~~~y~~ 793 (842)
+||+.+.+++++..+.+
T Consensus 247 aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 247 AGFKDVKLKRIGPKWYR 263 (340)
T ss_pred CCCeEEEEEEcChhhcc
Confidence 89999999988765433
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=151.09 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=115.0
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...+++ +++...|+...+.+++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCE
Confidence 4455556666779999999999999999997 889999999999999999999888773 7888888876554468999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+++.+++|++.+....++++++++|||||++++........ +. .. .|..+..+.+++.+.+. +|
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~---~~ 162 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYA---DW 162 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhC---CC
Confidence 999999999987778999999999999999976654332211 10 00 12234567888876553 58
Q ss_pred EEEEEEe
Q 035870 780 CVEQVEN 786 (842)
Q Consensus 780 ~v~~~~~ 786 (842)
++.....
T Consensus 163 ~~~~~~e 169 (195)
T TIGR00477 163 ELLKYNE 169 (195)
T ss_pred eEEEeec
Confidence 8777663
|
Part of a tellurite-reducing operon tehA and tehB |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=156.36 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=72.2
Q ss_pred CCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHH-HhhcCCC
Q 035870 203 GRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDAL-KILGNQA 280 (842)
Q Consensus 203 ~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~ 280 (842)
..+.|.++.||++.++.++++.++++|++|.+++.|++|..+++. +.|..+||+++.++.||+++.++.+. +|++...
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 346889999999999999999999999999999999999998866 58999999999999999998777766 8888765
Q ss_pred ChHH
Q 035870 281 TFDE 284 (842)
Q Consensus 281 ~~~~ 284 (842)
.+++
T Consensus 332 LPee 335 (561)
T KOG4254|consen 332 LPEE 335 (561)
T ss_pred CCch
Confidence 5554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=157.71 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 613 AQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 613 aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
.|+...+.+++.+...++.+|||||||+|.++..+++. +.+|+++|+|++|++.|+++.. .+.++++|+.+++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~ 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc
Confidence 45666778888887777889999999999999999876 8899999999999999988742 3578999999887
Q ss_pred -cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-ccCCCCCCCHHHHH
Q 035870 693 -KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-IFPGGCLPSLSRIT 770 (842)
Q Consensus 693 -~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~p~~~~~~~~~~~ 770 (842)
++++||+|+|+.+++++++ +..+++++.++|||||.+++..+...... .... .|..-. ......+++..++.
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--el~~--~~~~~~~~~~~~~~~~~~~l~ 172 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP--ELHQ--AWQAVDERPHANRFLPPDAIE 172 (251)
T ss_pred CCCCcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH--HHHH--HHHHhccCCccccCCCHHHHH
Confidence 6679999999999999876 89999999999999999999876543211 1110 011000 11123467888888
Q ss_pred HHHhhcCCcEEEEEEecCccH
Q 035870 771 SAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~~~~~y 791 (842)
..+.. .++.. +.+.+..+|
T Consensus 173 ~~l~~-~~~~~-~~~~~~~~f 191 (251)
T PRK10258 173 QALNG-WRYQH-HIQPITLWF 191 (251)
T ss_pred HHHHh-CCcee-eeeEEEEEC
Confidence 87775 68764 445555444
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=165.58 Aligned_cols=243 Identities=16% Similarity=0.173 Sum_probs=142.2
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEe--eCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVT--FDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
|+|+|||||+||||||++|++. |++|+|||+++.+||++++.. .+|+.++.|... ...+++++++++++.-.
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~--~~~y~~l~~ll~~ipsl 100 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM--ENHFECLWDLFRSIPSL 100 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc--cchHHHHHHHHHhcccc
Confidence 5899999999999999999985 689999999999999998855 579999888764 45889999999887422
Q ss_pred cccc--cc-eeeEec-cCCC----ceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccc
Q 035870 75 MEMS--DM-SFSVSL-EKGH----GCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSE 146 (842)
Q Consensus 75 ~~~~--~~-~~~~~~-~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (842)
..+. .. .+.... .+.. ++.+.. + ..+....-.++. +...++.++ ........++.
T Consensus 101 e~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~--g--~~~d~~~~~L~~---k~r~~Ll~l----------~l~~e~~Ld~~ 163 (576)
T PRK13977 101 EDPGASVLDEFYWFNKDDPNYSKARLIHKR--G--EILDTDKFGLSK---KDRKELLKL----------LLTPEEKLDDK 163 (576)
T ss_pred CCCCcccccceeeeecCCcccceeeEEcCC--C--CEEECcCCCCCH---HHHHHHHHH----------hccCHHHhCCc
Confidence 2110 00 000000 0000 001000 0 000000000111 111111111 11111112789
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc--cccccCCCCceEEec-CChhHHHHHHHH
Q 035870 147 TLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH--HLLQLFGRPQWLTVR-WRSHSYVNKVRK 223 (842)
Q Consensus 147 s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-gG~~~l~~~L~~ 223 (842)
++.+|+.++.+...|. .++.++ ++-. .-.|+..+.+|+..- ++..+.........+ .-..+++..|.+
T Consensus 164 tI~d~f~~~Ff~t~Fw-~~w~t~----FaF~----~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~ 234 (576)
T PRK13977 164 TIEDWFSPEFFETNFW-YYWRTM----FAFE----KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIK 234 (576)
T ss_pred CHHHHHhhcCchhHHH-HHHHHH----HCCc----hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHH
Confidence 9999999987765443 334443 3322 223777777776532 222211111111111 224689999999
Q ss_pred HhhhcCceEEeCCCeeEEEeC--CC-c-E-EEEeC-CCc-----EEeCCEEEEccChHH
Q 035870 224 QLESWGCQIRTSSEVCSVLPA--DK-G-C-TIVCG-DGS-----REFYNSCVMALHAPD 271 (842)
Q Consensus 224 ~l~~~G~~i~~~~~V~~I~~~--~~-~-v-~V~~~-~G~-----~~~ad~VV~A~p~~~ 271 (842)
.|+++|++|+++++|++|..+ ++ + | .|... +|+ ....|.||+|+...+
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 999999999999999999985 32 2 3 34443 232 247899999976543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=155.73 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=127.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
...++..+...++.+|||||||+|.++..+++.. ..+++++|+|+.+++.+++++...++..+++++.+|+.+.+ +.
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3456666677788999999999999999999884 48999999999999999999887666668999999998877 55
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc-------cCC-------
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI-------FPG------- 760 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~p~------- 760 (842)
++||+|++..+++++.+ +..+++++.++|+|||.+++.++..+.... ......+....+ +.+
T Consensus 120 ~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 78999999999999976 899999999999999999988776554321 000000000000 000
Q ss_pred -----CCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 761 -----GCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 761 -----~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
...++..++.+.+.+ +||++..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 228 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEE-AGFERVRYRNLTG 228 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHh-CCCceeeeeeeec
Confidence 134677888887776 8999888877543
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=169.95 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
...++.+|++.+++.|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|+.++.. .+++. + .. .+..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~-~l~~~-~----~~---~~~p 250 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA-SHFPQ-F----ER---SIAI 250 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc-ccChh-h----cC---eEEE
Confidence 568999999999999999999999999985 45578888888 6999999999987743 22221 0 00 0000
Q ss_pred eeceEEEecCC-------CCcCCCCCCcce---eeecc-cCCCceEEEEEcc-----c--------ccCCCCCCCCeEEe
Q 035870 294 VYSDIFLHRDK-------RFMPQNPAAWSA---WNFLE-SFDSKVCLTYWLN-----V--------LQNLGETSLPFLVT 349 (842)
Q Consensus 294 ~~~~v~l~~~~-------~~~p~~~~~~~~---~~~~~-~~~~~~~v~~~~~-----~--------l~~l~~~~~~~~~~ 349 (842)
....++ .+++ ..+|......+. ..|.. .++++..+..... . .....+.+.+.+..
T Consensus 251 ~~~~~~-~t~pl~~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (460)
T TIGR03329 251 VSSDMV-ITEPAPDLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRK 329 (460)
T ss_pred eccceE-ecCCCcHHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHH
Confidence 001111 1110 011111001010 01111 2333333321100 0 00000011222233
Q ss_pred cCCCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 350 LNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 350 l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
+.|......+.+.|....+. +.+..+.+...++.+|||+|.+|.|+|+ ..|..+|+.+|+.|+|.+
T Consensus 330 ~fP~L~~~~i~~~W~G~~~~----t~D~~P~iG~~~~~~gl~~a~G~~G~Gv-~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 330 FFPALAEVPIAASWNGPSDR----SVTGLPFFGRLNGQPNVFYGFGYSGNGV-APSRMGGQILSSLVLGLD 395 (460)
T ss_pred hCCCcCCCeeeEEEeceeCC----CCCCCceeeeecCCCCEEEEeCcCCCCh-hHHHHHHHHHHHHhcCCC
Confidence 44444444466788764442 2233334444445689999999999999 899999999999999865
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=156.82 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=99.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
++++.+|||||||+|..+..+++. ++++|+|+|+|++|++.|++++...+...+++++++|+.+++. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 457889999999999999988873 6789999999999999999999988887789999999988873 359999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.+++|++++....++++++++|||||.+++.+...
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999987778899999999999999999987543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=154.18 Aligned_cols=189 Identities=25% Similarity=0.332 Sum_probs=138.1
Q ss_pred HhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc
Q 035870 572 QARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT 651 (842)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 651 (842)
..++.++++||..|..+..+.+ ......+++.+...++.+|||+|||+|.++..+++..
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLH---------------------RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccH---------------------HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 3467889999988777653221 1223455666666788999999999999999999884
Q ss_pred C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 652 G--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 652 ~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
. ++++++|+|+.+++.++++.. ...+++++.+|+.+.+ ++++||+|+++.+++|..+ +..+++++.++|+||
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPG 136 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCC
Confidence 4 599999999999999998875 3347999999998877 5578999999999999876 889999999999999
Q ss_pred cEEEEEeecCCCcccccccCccchhhhcccC------------------C-CCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 729 GLLVLQFISIPDERYNEYRLSSDFIKEYIFP------------------G-GCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 729 G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p------------------~-~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
|++++.+...+.... ......+....+.| . ..+++..++.+.+.+ +||++...+.+..
T Consensus 137 G~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~ 213 (223)
T TIGR01934 137 GRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKE-AGFEEVRYRSLTF 213 (223)
T ss_pred cEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHH-cCCccceeeeeec
Confidence 999998776543211 00000111111110 0 124577788888876 8999887776543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=134.83 Aligned_cols=94 Identities=31% Similarity=0.452 Sum_probs=83.1
Q ss_pred EEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChh
Q 035870 634 LEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHE 712 (842)
Q Consensus 634 LDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~ 712 (842)
||+|||+|..+..++++.+.+|+++|+|+++++.++++.... ++.++++|..+++ ++++||+|+++.+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeecc--
Confidence 899999999999999987889999999999999999987654 5679999999999 889999999999999994
Q ss_pred hHHHHHHHHHhccccCcEEEE
Q 035870 713 FMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 713 ~~~~~~~~~~~~LkpgG~~~~ 733 (842)
++..+++++.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 489999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=153.08 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=119.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++.+++++..+|+... +++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchh
Confidence 467889999999999999999987 7789999999999999999998888766899999995443 4789999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-----ccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-----IFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
+|++++....+++.+.+.+++++.+.+. .. ...... ..++.+. ..+.....+..++.+.+.+ +||++
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~--~~-~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~ 209 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTFA--PY-TPLLAL----LHWIGGLFPGPSRTTRIYPHREKGIRRALAA-AGFKV 209 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEEC--Cc-cHHHHH----HHHhccccCCccCCCCccccCHHHHHHHHHH-CCCce
Confidence 9998878889999999987655443321 11 110000 0111111 1122334577788887776 89999
Q ss_pred EEEEecCc-cHHHHHHHHHH
Q 035870 782 EQVENIGI-HYYQTLRCWRK 800 (842)
Q Consensus 782 ~~~~~~~~-~y~~tl~~w~~ 800 (842)
.....+.. +|..++.+|.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~ 229 (230)
T PRK07580 210 VRTERISSGFYFSRLLEAVR 229 (230)
T ss_pred EeeeeccchhHHHHHHHHhh
Confidence 88877643 56677777754
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=153.87 Aligned_cols=139 Identities=18% Similarity=0.279 Sum_probs=102.4
Q ss_pred hHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHH
Q 035870 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVK 649 (842)
Q Consensus 570 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (842)
.+...+.++..||..|.+.....+.. -.+..++.+.... .++.+|||||||+|.++..+++
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~-----------------wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~ 71 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVR-----------------WRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKK 71 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHH-----------------HHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHH
Confidence 34557788888887776654322211 0011122222222 3478999999999999999998
Q ss_pred hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 650 RTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 650 ~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
..+.+|+|+|+|++|++.|+++. .++++|+.++| ++++||+|++..+++|+.+ ++..+++++|+|||.
T Consensus 72 ~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 72 VFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred hcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhhccCC--HHHHHHHHHHHhcCc
Confidence 75679999999999999998641 35789999998 7899999999999999976 899999999999993
Q ss_pred cEEEEEeecCCC
Q 035870 729 GLLVLQFISIPD 740 (842)
Q Consensus 729 G~~~~~~~~~~~ 740 (842)
+++.+++.|+
T Consensus 141 --~~ile~~~p~ 150 (226)
T PRK05785 141 --VGFIAMGKPD 150 (226)
T ss_pred --eEEEEeCCCC
Confidence 3344445544
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=157.19 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=120.0
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEE
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRII 701 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~ 701 (842)
..++++++|||||||+|..+..+++.. ..+|+++|+|+++++.|+++....++. +++++.+|+.+++ ++++||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 457799999999999999888887763 358999999999999999999888875 8999999999887 567999999
Q ss_pred EcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 702 SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 702 s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
++.+++|.++ ...+++++.++|||||++++.++................ +..-.+...+..++.+.+.+ +||..
T Consensus 152 ~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~-aGf~~ 225 (272)
T PRK11873 152 SNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL---YAGCVAGALQEEEYLAMLAE-AGFVD 225 (272)
T ss_pred EcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHH---HhccccCCCCHHHHHHHHHH-CCCCc
Confidence 9999999876 688999999999999999998876543221111110001 11111234567888887776 89988
Q ss_pred EEEEec
Q 035870 782 EQVENI 787 (842)
Q Consensus 782 ~~~~~~ 787 (842)
..+...
T Consensus 226 v~i~~~ 231 (272)
T PRK11873 226 ITIQPK 231 (272)
T ss_pred eEEEec
Confidence 776543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=143.87 Aligned_cols=107 Identities=31% Similarity=0.539 Sum_probs=96.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC--CCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA--NKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~--~~fD~i~s~ 703 (842)
+.+.+|||+|||+|.++..++++ ++.+++|+|+|+++++.|+++++..+++ +++++++|+.+++.. ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 46789999999999999999953 5789999999999999999999999988 899999999997632 799999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+++|+++ ...+++++.++|||+|.+++.++.
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999987 789999999999999999998776
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=150.15 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=126.1
Q ss_pred HHHHHHHHHcC--CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
...+.+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+..+++++.++|+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 34455666665 567899999999999999999987 78999999999999999999988777668999999998887
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc-----cCCCCCCCHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI-----FPGGCLPSLSR 768 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~p~~~~~~~~~ 768 (842)
++||+|++..+++|++.+....+++++.+++++++.+.+.. ....... ..++..+. .+....++..+
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP---KTAWLAF----LKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC---CchHHHH----HHHHHhhCcCcccccceEEecHHH
Confidence 78999999999999987778899999999998776655421 1111100 11111111 12223467888
Q ss_pred HHHHHhhcCCcEEEEEEecCccHHH
Q 035870 769 ITSAMSVASRLCVEQVENIGIHYYQ 793 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~~~~y~~ 793 (842)
+.+.+.+ +||++...+.....+..
T Consensus 190 ~~~~l~~-~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 190 LERALGE-LGWKIVREGLVSTGFYN 213 (219)
T ss_pred HHHHHHH-cCceeeeeecccccchh
Confidence 8888876 89999988876655543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=153.46 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=99.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
.++.+|||||||+|.++..+++. ++++|+|+|+|++|++.|+++++..+...+++++++|+.+++. ..+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 57789999999999999999885 5789999999999999999999887766689999999998873 3599999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+++|+++++...++++++++|||||.+++.+....
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 99999887789999999999999999999876543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=139.05 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=109.3
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.++.-++.++||+|||.|..+.+||++ |..|+++|+|+..++.+++.+++.+++ |+..+.|+.+...++.||+
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCE
Confidence 4555566656779999999999999999998 999999999999999999999988884 9999999988775578999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+|..++.|+..+..+.+++.+.+.++|||++++.++..... +... . |...+...+++.... .++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~-~----------~~~f~~~~~EL~~~y---~dW 162 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCP-S----------PFPFLLKPGELREYY---ADW 162 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--S-S------------S--B-TTHHHHHT---TTS
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCC-C----------CCCcccCHHHHHHHh---CCC
Confidence 999999999999999999999999999999999976643322 1111 1 111233556766553 478
Q ss_pred EEEEE
Q 035870 780 CVEQV 784 (842)
Q Consensus 780 ~v~~~ 784 (842)
++...
T Consensus 163 ~il~y 167 (192)
T PF03848_consen 163 EILKY 167 (192)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=144.06 Aligned_cols=137 Identities=22% Similarity=0.334 Sum_probs=103.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
..++.+|||||||.|.++..+++. +.+|+|+|+|+.+++. .++.....+..... ++++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 578899999999999999999877 7799999999999988 13444444444433 5689999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc---CCCCCCCHHHHHHHHhhcCCcEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF---PGGCLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---p~~~~~~~~~~~~~~~~~~gf~v~ 782 (842)
++|+++ +..++++++++|||||++++.+............ .+ .+.. .+....+.+++.+.+++ +||+++
T Consensus 88 l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~ll~~-~G~~iv 159 (161)
T PF13489_consen 88 LEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFL---KW--RYDRPYGGHVHFFSPDELRQLLEQ-AGFEIV 159 (161)
T ss_dssp GGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHH---HC--CGTCHHTTTTEEBBHHHHHHHHHH-TTEEEE
T ss_pred Hhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHH---hc--CCcCccCceeccCCHHHHHHHHHH-CCCEEE
Confidence 999986 9999999999999999999998876431110000 00 1111 12345688999888877 899987
Q ss_pred E
Q 035870 783 Q 783 (842)
Q Consensus 783 ~ 783 (842)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 5
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=150.56 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=110.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
++.+|||||||+|..+.++++. +.+|+|+|+|+.+++.++++++..++ ++++...|+.+...+++||+|+++.+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4459999999999999999997 88999999999999999999998887 68999999877655579999999999999
Q ss_pred cChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 709 VGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
++.+....+++++.++|||||++++......... . . -.|.....+.+++.+.+. +|++...+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~-~---~--------~~p~~~~~~~~el~~~~~---~~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY-P---C--------PMPFSFTFKEGELKDYYQ---DWEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC-C---C--------CCCCCcccCHHHHHHHhC---CCEEEEEe
Confidence 9877899999999999999999776443222111 0 0 012234457778876643 58888774
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=153.69 Aligned_cols=158 Identities=16% Similarity=0.296 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
+.+++.+.++++.+|||||||+|.+++.++++ ++.+++++|+ +++++.+++++++.++.++++++.+|+.+.+. ..+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PEA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CCC
Confidence 45677778888999999999999999999998 6789999998 78999999999999998899999999876542 247
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC------CCCCHHHHHH
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG------CLPSLSRITS 771 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~------~~~~~~~~~~ 771 (842)
|+|++..++|+.+++....+++++++.|||||++++.++..++.....+ .++..++.+.+ ...+..++.+
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFSVLGFKEQARYKE 292 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccccccCCCHHHHHH
Confidence 9999999999998876789999999999999999999886654322111 12233322222 2334678877
Q ss_pred HHhhcCCcEEEE
Q 035870 772 AMSVASRLCVEQ 783 (842)
Q Consensus 772 ~~~~~~gf~v~~ 783 (842)
.+.+ +||+.+.
T Consensus 293 ll~~-aGf~~v~ 303 (306)
T TIGR02716 293 ILES-LGYKDVT 303 (306)
T ss_pred HHHH-cCCCeeE
Confidence 7776 8997554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=139.05 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=89.8
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
++++.+|||||||+|..+..+++. ++++|+++|+|+++++.|+++++..+++ +++++++|+.+++..++||+|+++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~ 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc
Confidence 345889999999999999999875 6789999999999999999999999986 49999999988775568999999752
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. .++.+++++.++|||||++++..
T Consensus 122 ----~--~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ----A--SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ----c--CHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 37899999999999999999853
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=152.30 Aligned_cols=148 Identities=26% Similarity=0.392 Sum_probs=107.5
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEccccCCccCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL----QDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
++.+|||||||+|.+++.+++. +.+|+|+|+|++|++.|+++.+..+. ..++++...|+.++. ++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~--~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS--GKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC--CCcCEEEEcC
Confidence 5789999999999999999987 88999999999999999999876522 136789999987764 7899999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc-cccccCccchhhhcccCC------CCCCCHHHHHHHHhhcC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER-YNEYRLSSDFIKEYIFPG------GCLPSLSRITSAMSVAS 777 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~p~------~~~~~~~~~~~~~~~~~ 777 (842)
+++|++++....+++.+.++ .++|. ++.. .+... +... ..+.+ .+|+ .++.+.+++.+.+++ +
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~~~~~~l----~~~g~-~~~g~~~~~r~y~~s~eel~~lL~~-A 290 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF--APKTLYYDIL----KRIGE-LFPGPSKATRAYLHAEADVERALKK-A 290 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcchHHHHH----HHHHh-hcCCCCcCceeeeCCHHHHHHHHHH-C
Confidence 99999887677788888764 55555 4432 12111 1110 01111 2333 234578899888877 8
Q ss_pred CcEEEEEEecCc
Q 035870 778 RLCVEQVENIGI 789 (842)
Q Consensus 778 gf~v~~~~~~~~ 789 (842)
||++...+....
T Consensus 291 Gf~v~~~~~~~~ 302 (315)
T PLN02585 291 GWKVARREMTAT 302 (315)
T ss_pred CCEEEEEEEeec
Confidence 999987665443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-14 Score=144.33 Aligned_cols=165 Identities=20% Similarity=0.199 Sum_probs=119.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
+.+++.+.+.++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.++++.. ....++++...|+.+.+ +++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCCCC
Confidence 456778888999999999999999999999873 5799999999999999998833 23347999999998877 567
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-c-CccchhhhcccCCCCCCCHHHHHHHH
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-R-LSSDFIKEYIFPGGCLPSLSRITSAM 773 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~p~~~~~~~~~~~~~~ 773 (842)
+||+|++..+++|+.+ +..+++++.++|||||.+++............. . ....+...+........+..++.+.+
T Consensus 87 ~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 87 SFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 9999999999999987 899999999999999999997754322111110 0 00111111111111222345666666
Q ss_pred hhcCCcEEEEEEecC
Q 035870 774 SVASRLCVEQVENIG 788 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (842)
.+ +||....++...
T Consensus 165 ~~-aGf~~~~~~~~~ 178 (241)
T PRK08317 165 RE-AGLTDIEVEPYT 178 (241)
T ss_pred HH-cCCCceeEEEEE
Confidence 66 899876665543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-14 Score=155.95 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHHHHHhhcCC-CChHHHHhcccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQ-ATFDETRILGAF 291 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~-~~~~~~~~l~~~ 291 (842)
...+++.|++.++++|++|+++++|++|+.+++++ .|++.+| ++.||+||+|+.++.. .+++.. ...+ +.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g~~~p----i~-- 271 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLGVDIP----VY-- 271 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhCCCcc----cC--
Confidence 56889999999999999999999999999888876 4777655 7999999999987643 222210 0000 00
Q ss_pred ceeeceEEEecCCC-CcCCCCCCcceee-ecccCCCceEEEEEcc--ccc-CCC----CCCCCeEEecCCCCCCcceeEE
Q 035870 292 QYVYSDIFLHRDKR-FMPQNPAAWSAWN-FLESFDSKVCLTYWLN--VLQ-NLG----ETSLPFLVTLNPDHVPEHTLLK 362 (842)
Q Consensus 292 ~~~~~~v~l~~~~~-~~p~~~~~~~~~~-~~~~~~~~~~v~~~~~--~l~-~l~----~~~~~~~~~l~~~~~~~~~~~~ 362 (842)
+.....+.+..+.. ..|.......... .....++...+..... ... ... +.+.+.+..+.|......+...
T Consensus 272 p~rg~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~ 351 (416)
T PRK00711 272 PLKGYSLTVPITDEDRAPVSTVLDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQATF 351 (416)
T ss_pred CccceEEEEecCCCCCCCceeEEecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcccccccce
Confidence 00000111111111 1111000000000 0011123333321110 000 000 0011112223333222234556
Q ss_pred EEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 363 WSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 363 w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
|...+|. + .+..+.+... +.+|+|++.+|.|+|+ ..|..+|+.+|+.|++.+.+
T Consensus 352 w~G~r~~-t---~D~~PiIG~~-~~~gl~~a~G~~g~G~-~~ap~~g~~la~li~g~~~~ 405 (416)
T PRK00711 352 WTGLRPM-T---PDGTPIVGAT-RYKNLWLNTGHGTLGW-TMACGSGQLLADLISGRKPA 405 (416)
T ss_pred eeccCCC-C---CCCCCEeCCc-CCCCEEEecCCchhhh-hhhhhHHHHHHHHHcCCCCC
Confidence 7655442 1 1222233332 3589999999999999 89999999999999987644
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-15 Score=118.97 Aligned_cols=67 Identities=48% Similarity=0.821 Sum_probs=60.7
Q ss_pred EECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecC-CCchhHHHHHHHc
Q 035870 5 VIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR-VTYPNMMEFFESL 71 (842)
Q Consensus 5 IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~~l~~~l 71 (842)
|||||+|||+||++|+++|++|+|+|+++++||++++...+|+.+|.|++++.. ..++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999999999965 3578899999875
|
... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=138.75 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=112.6
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEEc
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--------------QDLIRLYLC 686 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--------------~~~v~~~~~ 686 (842)
.+..+..+++.+|||+|||.|..+..+|++ |.+|+|+|+|+.+++.+.+.. ++ ..+|+++++
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEc
Confidence 334444457789999999999999999998 999999999999999864321 21 136899999
Q ss_pred cccCCcc--CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCC
Q 035870 687 DYRQLAK--ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLP 764 (842)
Q Consensus 687 d~~~~~~--~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 764 (842)
|+.+++. .++||.|+...+++|++.+....+++.+.++|||||++++.++........ -| -+..
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-------------gp-p~~~ 167 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-------------GP-PFSV 167 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-------------Cc-CCCC
Confidence 9988872 468999999999999999889999999999999999988877655322110 01 1235
Q ss_pred CHHHHHHHHhhcCCcEEEEEEecC
Q 035870 765 SLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.+++.+.+.. +|+++.++...
T Consensus 168 ~~~eL~~~f~~--~~~i~~~~~~~ 189 (213)
T TIGR03840 168 SPAEVEALYGG--HYEIELLESRD 189 (213)
T ss_pred CHHHHHHHhcC--CceEEEEeecc
Confidence 77888776643 67777666543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=135.62 Aligned_cols=163 Identities=20% Similarity=0.209 Sum_probs=129.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
.+-...++..+.+.+..+|.|+|||.|..+..++++ +++.++|+|-|++|++.|+++. + +++|..+|++++.+
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl~~w~p 89 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P-DATFEEADLRTWKP 89 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C-CCceecccHhhcCC
Confidence 344567888889989999999999999999999999 8999999999999999998874 2 78999999999998
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc----cCccchhhhcccC---CCCCCCH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY----RLSSDFIKEYIFP---GGCLPSL 766 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~p---~~~~~~~ 766 (842)
+..+|++++|.+++++++ ..+.|..+-..|.|||.+.++....-+...... .....|-+.+--+ ...+|++
T Consensus 90 ~~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~ 167 (257)
T COG4106 90 EQPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSP 167 (257)
T ss_pred CCccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCH
Confidence 889999999999999998 789999999999999999997654433221111 1122344333221 3568899
Q ss_pred HHHHHHHhhcCCcEEEEEEe
Q 035870 767 SRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 767 ~~~~~~~~~~~gf~v~~~~~ 786 (842)
..+.+.+.. .+-+|.-.+.
T Consensus 168 a~Yy~lLa~-~~~rvDiW~T 186 (257)
T COG4106 168 AAYYELLAP-LACRVDIWHT 186 (257)
T ss_pred HHHHHHhCc-ccceeeeeee
Confidence 999888876 4666655444
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=144.02 Aligned_cols=178 Identities=24% Similarity=0.401 Sum_probs=131.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
...++.+...+...++.+|||||||+|.++..+++. +++|+++|+|+.+++.+++++...+. ++++...|..+.+
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh
Confidence 344455666666678899999999999999999886 88999999999999999999877665 5788889888775
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc----cCCCCCCCHHH
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI----FPGGCLPSLSR 768 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~p~~~~~~~~~ 768 (842)
.+++||+|++..+++|+++ ...+++.+.++|+|||.+++..+......+........++.... .....+++..+
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSE 188 (233)
T ss_pred cCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHH
Confidence 4579999999999999986 78999999999999999998765422111100000000111110 01123567888
Q ss_pred HHHHHhhcCCcEEEEEEecCccHHHHHHHHHH
Q 035870 769 ITSAMSVASRLCVEQVENIGIHYYQTLRCWRK 800 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~ 800 (842)
+.+.+.+ +||+++... +.+|.+....|..
T Consensus 189 ~~~~l~~-~Gf~~v~~~--~~~~~~~~~~~~~ 217 (233)
T PRK05134 189 LAAWLRQ-AGLEVQDIT--GLHYNPLTNRWKL 217 (233)
T ss_pred HHHHHHH-CCCeEeeee--eEEechhhcceee
Confidence 8888877 899988765 4567777777765
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-15 Score=128.91 Aligned_cols=95 Identities=26% Similarity=0.515 Sum_probs=83.4
Q ss_pred EEEeccCchHHHHHHHHhc--C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc-hh
Q 035870 633 VLEIGCGWGTLAIEIVKRT--G--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE-MI 706 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~~--~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~-~~ 706 (842)
|||+|||+|..+..+++.. + .+++|+|+|++|++.++++....+. +++++++|+.+++ .+++||+|++.+ ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999873 3 7999999999999999999988766 7999999999988 678999999965 49
Q ss_pred hhcChhhHHHHHHHHHhccccCc
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDG 729 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG 729 (842)
+|+.++....+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-14 Score=128.72 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.....+++.+.+.++.+|||+|||+|.++..++++ ++++|+++|+|+.+++.++++++..++. +++++..|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh
Confidence 33456777888888899999999999999999988 5689999999999999999999988876 7899999977532
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
..++||.|++.....+ ..++++++.+.|||||++++..+
T Consensus 85 ~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 3368999999765433 56899999999999999999765
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.4e-14 Score=135.21 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
++.+|||||||+|.++..++.. ++++|+++|+|+++++.+++++++.+++ +++++++|+.++...++||+|+|+. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh
Confidence 4789999999999999998876 4679999999999999999999998886 6999999999876567999999976 33
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+ ++.+++.+.++|||||++++.
T Consensus 120 ~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 120 S-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred C-----HHHHHHHHHHhcCCCCEEEEE
Confidence 2 577889999999999999984
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=138.10 Aligned_cols=129 Identities=26% Similarity=0.480 Sum_probs=99.6
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
.+++|+... ++.+.. .|++.+...++.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.++++++.+++
T Consensus 7 ~~gvFs~~~--~d~~t~----lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFSPPR--LDAGTR----LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTTTTS--HHHHHH----HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeCCCC--CCHHHH----HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 356665332 333333 3333333337789999999999999999998 445799999999999999999999999
Q ss_pred CCCeEEEEccccCCccCCCccEEEEcchhhhcCh---hhHHHHHHHHHhccccCcEEEEE
Q 035870 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH---EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 678 ~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~---~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
++ ++++..|..+..++++||+|+|+..++.-.+ +....++++..++|||||.+++.
T Consensus 81 ~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TT-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 75 9999999876655689999999988765543 34788999999999999999873
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-14 Score=134.85 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=94.4
Q ss_pred HHHHHHHHH-HcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 615 MRKVSLLIE-KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 615 ~~~~~~l~~-~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
++|.+.++. .|+-..-.++||+|||.|.++..||.+ ..+++++|+|+.+++.|++|+... .+|++++.|+.+..+
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP 103 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC
Confidence 345555554 577677789999999999999999998 569999999999999999998753 389999999988878
Q ss_pred CCCccEEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEee
Q 035870 694 ANKYDRIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+++||+||..++++++.+ +.+..+++.+.+.|+|||.+++...
T Consensus 104 ~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 899999999999999975 5789999999999999999999654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=135.33 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=111.9
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEEc
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--------------QDLIRLYLC 686 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--------------~~~v~~~~~ 686 (842)
.+..+...++.+|||+|||.|..+..+|++ |++|+|+|+|+.+++.+.+ +.++ ..+|++.++
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~ 104 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCG 104 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEEC
Confidence 333445567789999999999999999997 9999999999999998743 2222 247899999
Q ss_pred cccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCC
Q 035870 687 DYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLP 764 (842)
Q Consensus 687 d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 764 (842)
|+.+++ ..+.||.|+...+++|++.+....+++.+.++|||||++++.+...+.... .. .| ...
T Consensus 105 D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----~g--------Pp--~~~ 170 (218)
T PRK13255 105 DFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----AG--------PP--FSV 170 (218)
T ss_pred cccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----CC--------CC--CCC
Confidence 999886 236899999999999999988999999999999999986664444332210 00 11 245
Q ss_pred CHHHHHHHHhhcCCcEEEEEEecC
Q 035870 765 SLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.+++.+.+. .+|+++.++...
T Consensus 171 ~~~el~~~~~--~~~~i~~~~~~~ 192 (218)
T PRK13255 171 SDEEVEALYA--GCFEIELLERQD 192 (218)
T ss_pred CHHHHHHHhc--CCceEEEeeecc
Confidence 7888877664 248887776643
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-13 Score=136.34 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
|.+++...+..-.|.+|||||||.|.++..++.+....|+|+|.+.......+-...-.|....+..+..-+++++..+.
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 44566667655578999999999999999999984457999999987766544333333333344444456777776689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG-GCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~~~~ 775 (842)
||.|+|.+++.|..+ +-..++++++.|+|||.+++.+...+............+- -.++ -.+||+..+...+++
T Consensus 183 FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa---~m~nv~FiPs~~~L~~wl~r 257 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA---KMRNVWFIPSVAALKNWLER 257 (315)
T ss_pred cCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc---CCCceEEeCCHHHHHHHHHH
Confidence 999999999999976 8999999999999999999998876543311110000000 0011 136899999888887
Q ss_pred cCCcEEEEEEecC
Q 035870 776 ASRLCVEQVENIG 788 (842)
Q Consensus 776 ~~gf~v~~~~~~~ 788 (842)
+||+-+.+-+..
T Consensus 258 -~gF~~v~~v~~~ 269 (315)
T PF08003_consen 258 -AGFKDVRCVDVS 269 (315)
T ss_pred -cCCceEEEecCc
Confidence 899877766544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=125.79 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcC---CCCC-CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 612 AAQMRKVSLLIEKAR---VSKG-QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 612 ~aq~~~~~~l~~~l~---~~~~-~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
+|+.+.++.+.+... +... .+|||+|||.|.+...|++. +....+|+|.|+.+++.|+..+++.++++.|+|.+.
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 456777777776655 3333 39999999999999999998 455699999999999999999999999988999999
Q ss_pred cccCCc-cCCCccEEEEcchhhhcC------hhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 687 DYRQLA-KANKYDRIISCEMIEAVG------HEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 687 d~~~~~-~~~~fD~i~s~~~~~~~~------~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+.+.. ..++||+|.--+.+.+++ ...+..|+..+.++|+|||+++|.++..
T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 998865 568999999888776662 2235778999999999999999977654
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=150.57 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+++.|.+.+++.|++++.+++|++|..+++++.|++.+| ++.||.||+|+..+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence 457888898888888999999999999999888888888777 799999999998753
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=137.11 Aligned_cols=111 Identities=22% Similarity=0.315 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
....+++.+.++++++|||||||+|..+..+++.. +.+|+++|+|+++++.|++++...++.++++++.+|..+.. .
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 45677888888999999999999999999998873 46999999999999999999999888778999999987654 4
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++||+|++...++++++ ++.+.|||||++++..
T Consensus 140 ~~~fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIPS--------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhhH--------HHHHhcCcCcEEEEEE
Confidence 579999999988887753 5778899999998854
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=136.83 Aligned_cols=155 Identities=27% Similarity=0.414 Sum_probs=115.3
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~ 706 (842)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.. ++++...|+.+.+ ..++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999999886 778999999999999999998877653 6899999988776 23789999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC----CCCCCHHHHHHHHhhcCCcEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG----GCLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~----~~~~~~~~~~~~~~~~~gf~v~ 782 (842)
+|+.+ +..+++++.++|+|||.+++..................++.....++ ..+.+..++.+.+.+ +||+++
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~G~~i~ 199 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES-AGLRVK 199 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH-cCCeee
Confidence 99976 78999999999999999998765432111000000011111111111 124567788887776 899999
Q ss_pred EEEecC
Q 035870 783 QVENIG 788 (842)
Q Consensus 783 ~~~~~~ 788 (842)
++....
T Consensus 200 ~~~~~~ 205 (224)
T TIGR01983 200 DVKGLV 205 (224)
T ss_pred eeeeEE
Confidence 887644
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=138.91 Aligned_cols=140 Identities=22% Similarity=0.225 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..+..+++.+.++++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++++.++. +++++++|..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc
Confidence 345678888889999999999999999999999873 347999999999999999999999984 8999999987654
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-cCccchhhhcccCCCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-RLSSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~p~~~~~~ 765 (842)
...+||+|++.....+++ +.+.+.|||||++++.... .......+ +....|..+.+++...+|-
T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pl 207 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPVGE-YLQVLKRAEKRGGEIIIKDVEPVAFVPL 207 (215)
T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEEcC-CceEEEEEEEeCCEEEEEEeeeEEEEeC
Confidence 446899999987665553 3577889999999986543 22222222 2234466666666555553
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-13 Score=131.75 Aligned_cols=111 Identities=20% Similarity=0.277 Sum_probs=93.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+.+.++.+|||||||+|.++..+++. ++.+|+++|+|+++++.|+++++..++. +++++++|... +..++|
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~~ 98 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGKA 98 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcCC
Confidence 34567778889999999999999999999987 5679999999999999999999888875 79999999753 223689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|+|++....++ +..+++.+.++|||||++++..+
T Consensus 99 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 99 DAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 99999765433 57789999999999999998654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=145.82 Aligned_cols=131 Identities=14% Similarity=0.242 Sum_probs=106.1
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
..++|+...-+... +.+++.+....+.+|||+|||+|.+++.++++ ++.+|+++|+|+.+++.|+++++.++.
T Consensus 204 ~~gVFs~~~LD~Gt------rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 204 HANVFSRTGLDIGA------RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred cCCccCCCCcChHH------HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 47888877666555 45677777666679999999999999999987 678999999999999999999988765
Q ss_pred C--CCeEEEEccccCCccCCCccEEEEcchhhhc---ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 678 Q--DLIRLYLCDYRQLAKANKYDRIISCEMIEAV---GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 678 ~--~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~---~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. .+++++..|..+..+.++||+|+|+..++.. .++...++|++++++|||||.+++..
T Consensus 278 ~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 278 EALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 3789999997554334689999999888643 33345789999999999999999964
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-13 Score=131.12 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=108.1
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEE
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRI 700 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i 700 (842)
+...+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++++.++. +++++.+|..+.. .++||.|
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~V 86 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVI 86 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEE
Confidence 344445556789999999999999999987 55999999999999999999988775 5899999987654 3589999
Q ss_pred EEcchhhhcChh-------------------hHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC
Q 035870 701 ISCEMIEAVGHE-------------------FMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG 761 (842)
Q Consensus 701 ~s~~~~~~~~~~-------------------~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 761 (842)
+++..+++.++. ....+++++.++|||||.+++......
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------
Confidence 999887766431 146789999999999999998653322
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 762 CLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 762 ~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
...++.+.+.+ .||.++.+..-+
T Consensus 145 ---~~~~~~~~l~~-~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ---GEPDTFDKLDE-RGFRYEIVAERG 167 (179)
T ss_pred ---ChHHHHHHHHh-CCCeEEEEEEee
Confidence 13455566665 799988877654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-14 Score=159.28 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=57.1
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHHHHHhhc
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~~~~ll~ 277 (842)
..+.+.+| ...+++.|.+.+++.|++|+.+++|++|..++++|. |.+.+|+ +.||+||+|+.++... ++.
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~-l~~ 208 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ-LLP 208 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH-HHH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee-eee
Confidence 34555666 789999999999999999999999999999999997 9999996 9999999999876433 443
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=140.17 Aligned_cols=156 Identities=20% Similarity=0.275 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHcCC---CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 035870 613 AQMRKVSLLIEKARV---SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688 (842)
Q Consensus 613 aq~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (842)
.|......+++.+.. ..+.+|||||||+|.++..+++. +..+++++|+|+++++.++++.. ++++++.+|+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence 344444555555442 34579999999999999999988 45789999999999999988753 3789999999
Q ss_pred cCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHH
Q 035870 689 RQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLS 767 (842)
Q Consensus 689 ~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (842)
.+.+ ++++||+|++..+++|+.+ +..+++++.++|||||.+++..+...... .. .....+ .+..+++..
T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~--~~---~~~~~~---~~~~~~~~~ 159 (240)
T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLH--EL---RQSFGQ---HGLRYLSLD 159 (240)
T ss_pred hhCCCCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHH--HH---HHHHHH---hccCCCCHH
Confidence 9887 6789999999999999976 78999999999999999999765443211 00 011111 233456777
Q ss_pred HHHHHHhhcCCcEEEEEE
Q 035870 768 RITSAMSVASRLCVEQVE 785 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~ 785 (842)
++.+.+.+ . |.....+
T Consensus 160 ~~~~~l~~-~-f~~~~~~ 175 (240)
T TIGR02072 160 ELKALLKN-S-FELLTLE 175 (240)
T ss_pred HHHHHHHH-h-cCCcEEE
Confidence 88777765 4 7655443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=134.21 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 608 EDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 608 ~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
+.+..+....+...+.. +.++.+|||||||+|.++..+++. ++.+++|+|+|+++++.|+++.. ++++.++
T Consensus 24 ~~~~~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~ 95 (204)
T TIGR03587 24 QSLVAAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQG 95 (204)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEe
Confidence 34444444444555444 346789999999999999999887 57899999999999999988642 5788899
Q ss_pred cccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 687 DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 687 d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|+.+..++++||+|+++.+++|++.+.+..+++++.+++ ++++++.++..+
T Consensus 96 d~~~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 96 SLFDPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred eccCCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 988722678999999999999998778899999999998 568888776544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=148.95 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
...++..+.+.+.+.|++++++++|++|..+++++.|++++| ++.||.||+|+.++.. .+++. . .++.
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~-~---------~~~i 215 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK-DLLPP-L---------ELPL 215 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh-hhccc-c---------cCCc
Confidence 356788888888888999999999999999888899999888 7999999999987643 33332 1 0111
Q ss_pred eec---eEEEecCCCCc-CCCCCCcc------eeeecc-cCCCc-eEEEEEcc-c----c---------cCCCCCCCCeE
Q 035870 294 VYS---DIFLHRDKRFM-PQNPAAWS------AWNFLE-SFDSK-VCLTYWLN-V----L---------QNLGETSLPFL 347 (842)
Q Consensus 294 ~~~---~v~l~~~~~~~-p~~~~~~~------~~~~~~-~~~~~-~~v~~~~~-~----l---------~~l~~~~~~~~ 347 (842)
.+. .+.+..+..+. +.....+. ...|.. ..+++ ..+..... . . ....+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (376)
T PRK11259 216 TPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFL 295 (376)
T ss_pred eEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHH
Confidence 111 11111111100 00000000 001111 11222 33322111 0 0 00000001111
Q ss_pred EecCCCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCcc
Q 035870 348 VTLNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSC 421 (842)
Q Consensus 348 ~~l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~ 421 (842)
..+.|.... +...|...+| + +++..+.+...+..+|+|++.+|.|+|+ ..|...|+.+|+.|++.+.
T Consensus 296 ~~~~P~~~~--~~~~~~g~~~-~---t~D~~P~ig~~~~~~gl~~~~G~~g~G~-~~ap~~g~~la~li~~~~~ 362 (376)
T PRK11259 296 RNYLPGVGP--CLRGAACTYT-N---TPDEHFIIDTLPGHPNVLVASGCSGHGF-KFASVLGEILADLAQDGTS 362 (376)
T ss_pred HHHCCCCCc--cccceEEecc-c---CCCCCceeecCCCCCCEEEEecccchhh-hccHHHHHHHHHHHhcCCC
Confidence 222332211 4445665544 2 2233444555555789999999999999 8999999999999998763
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-15 Score=130.84 Aligned_cols=95 Identities=24% Similarity=0.452 Sum_probs=65.7
Q ss_pred EEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchhhhc
Q 035870 634 LEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMIEAV 709 (842)
Q Consensus 634 LDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~~~~ 709 (842)
||||||+|.++..++++ +..+++++|+|+.|++.+++++.+.+.. +......+..+.. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999988 6789999999999999999999887643 3334444433332 33599999999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEE
Q 035870 710 GHEFMEEFFGCCESLLAEDGLL 731 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~ 731 (842)
.+ +..++++++++|||||.+
T Consensus 80 ~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---HHHHHHHHTTT-TSS-EE
T ss_pred hh--HHHHHHHHHHHcCCCCCC
Confidence 44 899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=131.63 Aligned_cols=112 Identities=23% Similarity=0.384 Sum_probs=94.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
..+.++.+.++.+|||+|||+|.++..+++. .+.+|+++|+|+++++.++++++..++.++++++.+|..+.. ..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 3457888999999999999999999999876 347999999999999999999999987678999999987643 346
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||.|++... ...+..+++.+.++|||||++++...
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 8999998542 23478899999999999999998543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=127.66 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=94.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEccccCCc--cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIR-LYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~-~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
.....|||+|||+|..-.+.--.++++||++|+++.|-+.+.+.++++. +.++. |++++.++++ ++++||.||+..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3344789999999999877766679999999999999999999998874 44676 9999999999 889999999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+++.+.+ +.+.++++.|+|||||++++-....
T Consensus 154 vLCSve~--~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 154 VLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEeccCC--HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999866 8999999999999999999866554
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=136.28 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=57.5
Q ss_pred CceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 205 PQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 205 ~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
+.++......+.+++.|.+++++.|++|+++++|.+|..++.+..|.+.+|+++.||.+|+|+.
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 3444444778899999999999999999999999999999989999999998999999999976
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=137.58 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=113.0
Q ss_pred hHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHH
Q 035870 585 NELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQ 664 (842)
Q Consensus 585 ~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~ 664 (842)
++.+...+++.|.|.++..+... ..++.+.+. ..++.+|||+|||+|.+++.+++....+|+|+|+|+.+
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt~--------~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~ 154 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTTR--------LCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA 154 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHHH--------HHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 45556789999999888754321 111222221 45789999999999999998877633469999999999
Q ss_pred HHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccc
Q 035870 665 LKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN 744 (842)
Q Consensus 665 ~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~ 744 (842)
++.|+++++.+++.+++.+..+| .+||+|+++...+ ....+++++.++|||||+++++.+...
T Consensus 155 l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~~~----- 217 (250)
T PRK00517 155 VEAARENAELNGVELNVYLPQGD-------LKADVIVANILAN-----PLLELAPDLARLLKPGGRLILSGILEE----- 217 (250)
T ss_pred HHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECcHh-----
Confidence 99999999998875455544433 2799999975433 257889999999999999999754321
Q ss_pred cccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 745 EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 745 ~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
...++.+.+.+ .||++......+
T Consensus 218 --------------------~~~~v~~~l~~-~Gf~~~~~~~~~ 240 (250)
T PRK00517 218 --------------------QADEVLEAYEE-AGFTLDEVLERG 240 (250)
T ss_pred --------------------hHHHHHHHHHH-CCCEEEEEEEeC
Confidence 23455666665 799988776543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=139.39 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=109.5
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-----TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i 700 (842)
..++.+|||||||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++.+.|..+++ ++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356789999999999999888753 2469999999999999999886433 4667777766665 56799999
Q ss_pred EEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchh-hhcccCC-----CCCCCHHHHHHHH
Q 035870 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFI-KEYIFPG-----GCLPSLSRITSAM 773 (842)
Q Consensus 701 ~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~p~-----~~~~~~~~~~~~~ 773 (842)
+++.++||++++....+++++.++++ |.+++.++..+...+..+.. ...+. ..++-.. ...++.+++.+.+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999998777899999999998 67777776665332211111 00111 0111111 1356888888777
Q ss_pred hhcCCcEEEEEEecC
Q 035870 774 SVASRLCVEQVENIG 788 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (842)
.+ ||++.....++
T Consensus 212 ~~--Gf~~~~~~~~~ 224 (232)
T PRK06202 212 PQ--GWRVERQWPFR 224 (232)
T ss_pred hC--CCeEEecccee
Confidence 65 99987765543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=150.61 Aligned_cols=112 Identities=18% Similarity=0.287 Sum_probs=95.0
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEE
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRII 701 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~ 701 (842)
...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++....+. +++++++|..+++ ++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEE
Confidence 3446889999999999999988886 678999999999999999998766543 6889999988765 467999999
Q ss_pred Ecchhhhc-----------ChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 702 SCEMIEAV-----------GHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 702 s~~~~~~~-----------~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++.++|++ +.++...+++++.++|||||.+++.+...+
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 99999875 235678999999999999999999875444
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-13 Score=149.37 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=51.9
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC-----cEEeCCEEEEccChHH
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG-----SREFYNSCVMALHAPD 271 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VV~A~p~~~ 271 (842)
.++.+.+| ...++..|.+.+++.|++|+.+++|++|+.+++++.|.+.++ .+++||+||+|+.++.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 34444433 457888999999999999999999999998888777655432 3689999999998774
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=145.90 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEEeCCCcEEeCCEEEEccChHHH--HHhhcCCCChHHHHhccc
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIVCGDGSREFYNSCVMALHAPDA--LKILGNQATFDETRILGA 290 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VV~A~p~~~~--~~ll~~~~~~~~~~~l~~ 290 (842)
..++..|++.+.++|++++.+++|++|+.. ++++ .|+|.+| ++.+++||+++..+.. .+++....+ -
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~--------~ 253 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLP--------I 253 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCC--------c
Confidence 467788889999999999999999999864 4554 5888888 7999999999876643 222221110 0
Q ss_pred cceeeceEEEecCC--CCcCCCCCCcc--eeeecccCCCceEEEEEcccccCCC--------CCCCCeEEecCCCCCCcc
Q 035870 291 FQYVYSDIFLHRDK--RFMPQNPAAWS--AWNFLESFDSKVCLTYWLNVLQNLG--------ETSLPFLVTLNPDHVPEH 358 (842)
Q Consensus 291 ~~~~~~~v~l~~~~--~~~p~~~~~~~--~~~~~~~~~~~~~v~~~~~~l~~l~--------~~~~~~~~~l~~~~~~~~ 358 (842)
.++. ..++ .+++ ++++. ...+. ...+...++++..+....+...... +.+.+.+..+.|......
T Consensus 254 ~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~ 330 (407)
T TIGR01373 254 ESHP-LQAL-VSEPLKPIIDT-VVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVR 330 (407)
T ss_pred Cccc-ceEE-EecCCCCCcCC-eEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 0110 0111 1111 11110 00000 0111112233333332111100000 000111122333333333
Q ss_pred eeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 359 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 359 ~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
+...|...+|. +++..+.+... +.+|+|++.++.|.|+ ..|..+|+.+|+.|++..
T Consensus 331 ~~~~w~G~~~~----t~D~~PiIg~~-~~~gl~~a~G~~g~G~-~~ap~~G~~la~li~~~~ 386 (407)
T TIGR01373 331 MLRSWGGIVDV----TPDGSPIIGKT-PLPNLYLNCGWGTGGF-KATPASGTVFAHTLARGE 386 (407)
T ss_pred eEEEecccccc----CCCCCceeCCC-CCCCeEEEeccCCcch-hhchHHHHHHHHHHhCCC
Confidence 55677655542 22333344433 2589999999999999 899999999999998765
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=132.73 Aligned_cols=132 Identities=23% Similarity=0.393 Sum_probs=108.2
Q ss_pred CcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH
Q 035870 596 MTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE 674 (842)
Q Consensus 596 ~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~ 674 (842)
++-.+++|+...-|... +.+++.+....+.+|||+|||+|.+++.+++. +..+++.+|+|..+++.|++++..
T Consensus 131 ~~t~pGVFS~~~lD~GS------~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 131 FKTLPGVFSRDKLDKGS------RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred EEeCCCCCcCCCcChHH------HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 34468899888777776 57788888887779999999999999999999 678999999999999999999999
Q ss_pred cCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHH----HHHHHHHhccccCcEEEEEee
Q 035870 675 AGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFME----EFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 675 ~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~----~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++++. ..+...|..+-.. ++||.|+||..||. +.+-.. +++++..+.|++||.+.|..-
T Consensus 205 N~~~~-~~v~~s~~~~~v~-~kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 205 NGVEN-TEVWASNLYEPVE-GKFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cCCCc-cEEEEeccccccc-ccccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 98873 3666666443333 49999999999874 333334 899999999999999998543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-13 Score=139.15 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=100.7
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchH----HHHHHHHh-c-----CCEEEEEcCCHHHHHHHHHH
Q 035870 602 VFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGT----LAIEIVKR-T-----GCKYTGITLSEEQLKYAEMK 671 (842)
Q Consensus 602 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~----~~~~la~~-~-----~~~v~gid~s~~~~~~a~~~ 671 (842)
+|-.+...++.-+...+..+++.....++.+|||+|||+|. +++.+++. + +.+|+|+|+|++|++.|++.
T Consensus 72 ~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred cccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 34333444555444444455544444566899999999996 56666654 2 46899999999999999985
Q ss_pred HH----HcC----------------------CCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhc
Q 035870 672 VK----EAG----------------------LQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESL 724 (842)
Q Consensus 672 ~~----~~~----------------------l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~ 724 (842)
+- -.+ +..+|+|.+.|+.+.+ +.++||+|+|..+++|++++....++++++++
T Consensus 152 ~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~ 231 (264)
T smart00138 152 IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA 231 (264)
T ss_pred CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHH
Confidence 31 011 1247899999998877 57899999999999999987788999999999
Q ss_pred cccCcEEEEE
Q 035870 725 LAEDGLLVLQ 734 (842)
Q Consensus 725 LkpgG~~~~~ 734 (842)
|||||++++.
T Consensus 232 L~pGG~L~lg 241 (264)
T smart00138 232 LKPGGYLFLG 241 (264)
T ss_pred hCCCeEEEEE
Confidence 9999999994
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=134.62 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=117.7
Q ss_pred HhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHH
Q 035870 589 SLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYA 668 (842)
Q Consensus 589 ~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a 668 (842)
..-+|+.|.|..|..++....++. ++.+ .++|.+|||+|||+|.+++.+++....+|+|+|+++.+++.|
T Consensus 132 ~i~lDPGlAFGTG~HpTT~lcL~~---------Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa 201 (300)
T COG2264 132 NIELDPGLAFGTGTHPTTSLCLEA---------LEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAA 201 (300)
T ss_pred EEEEccccccCCCCChhHHHHHHH---------HHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHH
Confidence 467899999888876654322222 2222 248999999999999999999987334699999999999999
Q ss_pred HHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC
Q 035870 669 EMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748 (842)
Q Consensus 669 ~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~ 748 (842)
+++++.++++..++....+....+..++||+||+|= +-.+ +..+...+.++|||||+++++.|....
T Consensus 202 ~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~~q-------- 268 (300)
T COG2264 202 RENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSGILEDQ-------- 268 (300)
T ss_pred HHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehHhH--------
Confidence 999999988754444454555554557999999985 3333 578889999999999999997754321
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 749 SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
.+.+.+++.+ .||++.......
T Consensus 269 -----------------~~~V~~a~~~-~gf~v~~~~~~~ 290 (300)
T COG2264 269 -----------------AESVAEAYEQ-AGFEVVEVLERE 290 (300)
T ss_pred -----------------HHHHHHHHHh-CCCeEeEEEecC
Confidence 2345566655 799998876643
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=153.95 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=54.9
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..+.+.+| ...++++|.+.+++ |++|+.+++|++|+.++++|.|.+.+|..+.||.||+|+..+.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 34444444 46899999999988 9999999999999998888999998887788999999998764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=133.79 Aligned_cols=112 Identities=22% Similarity=0.258 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
-.....+++.+.++++++|||||||+|.++..+++.. +.+|+++|+++++++.|+++++..++. +++++++|..+..
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence 3455678888999999999999999999999998873 369999999999999999999998875 7999999987654
Q ss_pred -cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 -KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 -~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..++||+|++....++++ +.+.+.|||||++++..
T Consensus 141 ~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 557899999987765553 34566899999998853
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-13 Score=132.04 Aligned_cols=114 Identities=25% Similarity=0.353 Sum_probs=98.3
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCC
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANK 696 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~ 696 (842)
+..........+|||+|||+|.+++.+|++ ..+++++||+++++.+.|+++++.++++++|+++++|+.++. ...+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 344555666889999999999999999999 569999999999999999999999999999999999998886 3457
Q ss_pred ccEEEEcchhhhcCh----------------hhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAVGH----------------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~~~----------------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|+||..+.-.+. -.++++++...++|||||++.+.
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999999987643322 24789999999999999999983
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=136.83 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=103.7
Q ss_pred HHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHH
Q 035870 587 LFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLK 666 (842)
Q Consensus 587 ~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~ 666 (842)
-....+++.|.+.++..+.. +....+++.+ ..++++|||+|||+|.+++.+++....+|+++|+|+.+++
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt---------~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~ 196 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTT---------SLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVE 196 (288)
T ss_pred cEEEEECCCCcccCCCCHHH---------HHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHH
Confidence 34578899998887765432 1112233333 3478999999999999999988764458999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 667 YAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 667 ~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.|++++..+++.+++.+...|.... .+++||+|+++...++ +..++.++.++|||||++++..+
T Consensus 197 ~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 197 SARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999999887788887774333 3468999999876443 56889999999999999999765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=119.54 Aligned_cols=114 Identities=23% Similarity=0.268 Sum_probs=99.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
...+.+|.++|+++++|||||+|..++.++.. +.++|+++|-++++++..++|+++.|.+ +++++.+|+.+.. ...+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~~ 102 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLPS 102 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCCC
Confidence 35578999999999999999999999999955 7889999999999999999999999965 9999999987765 2237
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
||.|+..+. . ..+.+++.+...|||||++++..++..
T Consensus 103 ~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 103 PDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 999999876 2 268999999999999999999877643
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-12 Score=128.66 Aligned_cols=146 Identities=18% Similarity=0.277 Sum_probs=107.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
+..++..+.+.++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++...++ +++++++|+.+..++++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCe
Confidence 334555666788899999999999999999987334999999999999999999988776 588999998765455789
Q ss_pred cEEEEcchhhhcC-------------------hhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc
Q 035870 698 DRIISCEMIEAVG-------------------HEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF 758 (842)
Q Consensus 698 D~i~s~~~~~~~~-------------------~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 758 (842)
|+|+++..+.... .+.+..+++++.++|||||++++......
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------------------- 163 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------------------- 163 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------------------
Confidence 9999986433221 11256788999999999999997432221
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEEEecCccH
Q 035870 759 PGGCLPSLSRITSAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 759 p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y 791 (842)
...++.+.+.+ .||.+.........+
T Consensus 164 ------~~~~~~~~l~~-~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 164 ------GVERTLTRLSE-AGLDAEVVASQWIPF 189 (223)
T ss_pred ------CHHHHHHHHHH-CCCCeEEEEeeccCc
Confidence 22344555555 688776665544433
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-12 Score=124.63 Aligned_cols=237 Identities=16% Similarity=0.160 Sum_probs=143.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee--CCee-eecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DGVD-LDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~--~g~~-~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|++|||||++|+..|..|++.|++|+|+|+++.+||.|.+... .|.. .-.|+|.|+. ....+++.+.++---..-+
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-~~~~Vwdyv~~F~e~~~Y~ 81 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-DNKRVWDYVNQFTEFNPYQ 81 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-CchHHHHHHhhhhhhhhhc
Confidence 8999999999999999999999999999999999999999887 5654 4579999974 6778888887652111111
Q ss_pred cceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCC
Q 035870 79 DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYS 158 (842)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 158 (842)
... ....+|..+..+ .++..+-.-......+... ..+...........+..++++-..+. .+
T Consensus 82 hrV--la~~ng~~~~lP--~nl~ti~ql~G~~~~p~~a-------------~~~i~~~~~~~~~~~~q~~ee~ais~-vg 143 (374)
T COG0562 82 HRV--LALVNGQLYPLP--FNLNTINQLFGKNFTPDEA-------------RKFIEEQAAEIDIAEPQNLEEQAISL-VG 143 (374)
T ss_pred cce--eEEECCeeeecc--ccHHHHHHHhCccCCHHHH-------------HHHHHHhhccccccchhhhhhHHHHH-HH
Confidence 111 122444443332 2222211111111222211 11111111111222444555544443 56
Q ss_pred HHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc-cccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCC
Q 035870 159 ELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL-LQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237 (842)
Q Consensus 159 ~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~ 237 (842)
..+.+.++.++..+.|+.+++++ ++..+-+.--.... ..-+....--.|++|...+.+.|++.= ..+|++||.
T Consensus 144 ~~LY~~f~kgYT~KQWG~~p~eL---pasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp---~I~V~Lntd 217 (374)
T COG0562 144 RDLYEAFFKGYTEKQWGLDPKEL---PASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHP---NIDVRLNTD 217 (374)
T ss_pred HHHHHHHhccccHHHhCCChHHC---CHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCC---CceEEecCc
Confidence 77888999999999999999998 44433221100000 011222222357889999988888743 679999988
Q ss_pred eeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHH
Q 035870 238 VCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDAL 273 (842)
Q Consensus 238 V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~ 273 (842)
-..+..... .+.+..||-|-|.+..-
T Consensus 218 ~~~~~~~~~----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 218 FFDVKDQLR----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred HHHHhhhhc----------ccCCCceEEecchHhhh
Confidence 776643322 14566899998876544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-14 Score=131.75 Aligned_cols=180 Identities=26% Similarity=0.428 Sum_probs=133.0
Q ss_pred hhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC
Q 035870 574 RRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC 653 (842)
Q Consensus 574 ~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~ 653 (842)
..-|+.-||.-.+-|+..|-....|+-. .+++.++.+++..+-.++||+|||||..+..+-.. ..
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP--------------~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~ 148 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVP--------------ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-AD 148 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccH--------------HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hh
Confidence 3567778887778888877777777532 46678888888888899999999999999888665 56
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcE
Q 035870 654 KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
+.+|+|||+.|++.|.++ |+-+ ++.+.|...+. .+++||+|++..++-+++. ++.+|-.+..+|+|||.
T Consensus 149 ~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 149 RLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGL 220 (287)
T ss_pred hccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcc--hhhHHHHHHHhcCCCce
Confidence 899999999999999887 3322 34555543222 4579999999999999998 99999999999999999
Q ss_pred EEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 731 LVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
+.++.-+.++..- |. +-|...+-..+..+..+.+..||++..+++.
T Consensus 221 faFSvE~l~~~~~--------f~---l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 221 FAFSVETLPDDGG--------FV---LGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred EEEEecccCCCCC--------ee---cchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 9998766555420 11 1122222233334444444589999998874
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-13 Score=150.47 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=99.2
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC--Cc-cC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ--LA-KA 694 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~ 694 (842)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.+++.. +..++++++++|+.+ ++ ++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence 456677777677889999999999999999987 679999999999999876532 233479999999863 34 56
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
++||+|+++.+++|++++....++++++++|||||++++.+...
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 79999999999999998778999999999999999999977654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=129.18 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=101.2
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC----ccCCCcc
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL----AKANKYD 698 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~~~fD 698 (842)
.+.++++.+|||+|||+|.++..+++.. ..+|+++|+|++|++.+.++++.. .++.++.+|..+. +..++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 5788999999999999999999999873 468999999999999888877653 3799999998652 1235799
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
+|++... .......++++++++|||||++++.....+. +|... | . ....+.++.+.+ +|
T Consensus 144 ~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~----------d~~~~---~-~--~~~~~~~~~l~~-aG 202 (226)
T PRK04266 144 VIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSI----------DVTKD---P-K--EIFKEEIRKLEE-GG 202 (226)
T ss_pred EEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccc----------cCcCC---H-H--HHHHHHHHHHHH-cC
Confidence 9996422 1112345689999999999999995322110 11000 0 0 011334466665 89
Q ss_pred cEEEEEEecCc
Q 035870 779 LCVEQVENIGI 789 (842)
Q Consensus 779 f~v~~~~~~~~ 789 (842)
|++...+++++
T Consensus 203 F~~i~~~~l~p 213 (226)
T PRK04266 203 FEILEVVDLEP 213 (226)
T ss_pred CeEEEEEcCCC
Confidence 99999988764
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-13 Score=131.27 Aligned_cols=106 Identities=25% Similarity=0.272 Sum_probs=88.3
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCc---cCCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLA---KANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~---~~~~fD~i~s~ 703 (842)
++.+|||||||+|.++..+++. ++.+|+|+|+|+++++.|++++...+++ +++++++|+ ..++ ++++||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999887 5679999999999999999999988874 799999998 6554 35789999997
Q ss_pred chhhhcC------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVG------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+.. ....+.++++++++|||||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 6543221 1124789999999999999999853
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=123.67 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-CccC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LAKA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~ 694 (842)
..+..|++.|.++++++|||||||+|..+..+|+. ..+|+.+|..++..+.|+++++..|+. ||.++++|-.. +++.
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCC
Confidence 45678999999999999999999999999999998 559999999999999999999999997 59999999544 5566
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
..||+|+.......+|+ .+.+.|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 89999999999888875 34556999999999554
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=145.26 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccc
Q 035870 214 SHSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQ 292 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~ 292 (842)
...++.+|++.++++| ..+..+++|..++.+++.+.|.|.+|+ +.||+||+|+.++...-. .. .. .-.++
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~-~~-~~------~~~~~ 225 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA-AT-LG------ELPLP 225 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH-Hh-cC------CCcCc
Confidence 3689999999999999 567779999999986445789999985 999999999998754322 11 00 00001
Q ss_pred eee---ceEEEecCCCCcCCCC--CCc---ceeeeccc-CCCceEEEEEcccc---cC----CCC---CCCCeEEecCCC
Q 035870 293 YVY---SDIFLHRDKRFMPQNP--AAW---SAWNFLES-FDSKVCLTYWLNVL---QN----LGE---TSLPFLVTLNPD 353 (842)
Q Consensus 293 ~~~---~~v~l~~~~~~~p~~~--~~~---~~~~~~~~-~~~~~~v~~~~~~l---~~----l~~---~~~~~~~~l~~~ 353 (842)
..+ ..+.+.......+... ..+ ..-.|... .++...+....... .. ... .+.+....+.|.
T Consensus 226 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~ 305 (387)
T COG0665 226 LRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPG 305 (387)
T ss_pred cccccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHHHHHHhCcc
Confidence 111 0111111111110000 000 00111111 23333332211110 00 000 001111222232
Q ss_pred CCCcceeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCcccccC
Q 035870 354 HVPEHTLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCTLSS 425 (842)
Q Consensus 354 ~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~~~~ 425 (842)
.....+...|...+|..+ ++..+.+.. .. .+|||+|.+|.+.|+ ..+..+|+.+|+.|++.+.+...
T Consensus 306 l~~~~~~~~w~g~~~~t~---pd~~P~iG~~~~-~~~l~~a~G~~~~G~-~~~p~~g~~lA~li~g~~~~~~~ 373 (387)
T COG0665 306 LADAGIEAAWAGLRPPTT---PDGLPVIGRAAP-LPNLYVATGHGGHGF-TLAPALGRLLADLILGGEPELDL 373 (387)
T ss_pred ccccccceeeeccccCCC---CCCCceeCCCCC-CCCEEEEecCCCcCh-hhccHHHHHHHHHHcCCCCCCCc
Confidence 222233446766555332 233334443 33 789999999999999 89999999999999997744333
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=140.57 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=96.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
..++....++++++|||+|||+|.+++.++.. +.+++|+|+|+.|++.++++++..++++ +++.++|+.+++ .+++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC
Confidence 35566667889999999999999999988775 8999999999999999999999999875 899999999988 56799
Q ss_pred cEEEEcchhhh-------cChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~-------~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|.|+++..+.. ...+.+..+++++.++|||||++++..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99999865321 111236889999999999999998854
|
This family is found exclusively in the Archaea. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=132.70 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred CCCCCCeEEEeccCchHH-HHHHHH-h-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCCeEEEEccccCCc-cCCCccEE
Q 035870 626 RVSKGQEVLEIGCGWGTL-AIEIVK-R-TGCKYTGITLSEEQLKYAEMKVKE-AGLQDLIRLYLCDYRQLA-KANKYDRI 700 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~-~~~la~-~-~~~~v~gid~s~~~~~~a~~~~~~-~~l~~~v~~~~~d~~~~~-~~~~fD~i 700 (842)
...++.+|+|||||.|.+ ++.+++ . ++.+++|+|+|+++++.|++.++. .++.++++|+.+|+.+.. ..++||+|
T Consensus 120 ~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 334778999999997755 343443 3 678999999999999999999964 888889999999998876 44789999
Q ss_pred EEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 701 ~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++. +++++..+.+.++++++.+.|+|||.+++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 8888866679999999999999999999965
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=136.51 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=100.6
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
-++.|.....+... +.+++.+......+|||+|||+|.++..++++ ++.+|+++|+|+.+++.|+++++.+++
T Consensus 172 ~pgvFs~~~lD~gt------~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 172 LPGVFSRDGLDVGS------QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred CCCCCCCCCCCHHH------HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 35666655444443 34556565555568999999999999999988 567999999999999999999999887
Q ss_pred CCCeEEEEccccCCccCCCccEEEEcchhhhcC---hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVG---HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 678 ~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~---~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. .+++..|..+. ..++||+|+|+..+|+.. .+....+++++.++|||||.+++..
T Consensus 246 ~--~~~~~~D~~~~-~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 E--GEVFASNVFSD-IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred C--CEEEEcccccc-cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 4 57788886543 247899999999987632 2346899999999999999999854
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=118.37 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=112.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~ 703 (842)
++||.+|||+|||.|.+..++.+..+++..|+|++++.+..+.++ .+.++++|+.+-- ++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 478999999999999999999987799999999999998888766 4678999986543 78999999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc--cccc---c--Cccchh-hhcccCCCCCCCHHHHHHHHhh
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER--YNEY---R--LSSDFI-KEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~--~~~~---~--~~~~~~-~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
.+++++.+ +..+++++.|+ |...+++........ ..-. + .+..+- .=|-.|+-++.|+.++.+...+
T Consensus 83 qtLQ~~~~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 83 QTLQAVRR--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred hHHHhHhH--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 99999965 88888888665 667777554332110 0000 0 010110 1134477788899999877666
Q ss_pred cCCcEEEEEEecCccH
Q 035870 776 ASRLCVEQVENIGIHY 791 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y 791 (842)
.|++|++...+....
T Consensus 158 -~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 158 -LGIRIEERVFLDGGR 172 (193)
T ss_pred -CCCEEEEEEEEcCCC
Confidence 799999988776544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=127.18 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=105.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-Cc--cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LA--KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~--~~~ 695 (842)
+.+.+.+ +++.+|||||||+|.++..+++..+++++|+|+|+++++.++++ +++++++|+.+ ++ +++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCC
Confidence 3444444 47789999999999999999877678899999999999988642 47888999865 32 457
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc--cccccC-ccchhhh--cc---cCCCCCCCHH
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER--YNEYRL-SSDFIKE--YI---FPGGCLPSLS 767 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~--~~~~~~-~~~~~~~--~i---~p~~~~~~~~ 767 (842)
+||+|+++.+++|+.+ +..+++++.+.+++ +++......... ...+.. ...+... +. -|....++.+
T Consensus 75 sfD~Vi~~~~l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194)
T TIGR02081 75 SFDYVILSQTLQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194)
T ss_pred CcCEEEEhhHhHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence 8999999999999976 78899998887654 444322111000 000000 0001111 00 1334577999
Q ss_pred HHHHHHhhcCCcEEEEEEec
Q 035870 768 RITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~~~ 787 (842)
++.+.+++ +||++.+...+
T Consensus 150 ~~~~ll~~-~Gf~v~~~~~~ 168 (194)
T TIGR02081 150 DFEDLCGE-LNLRILDRAAF 168 (194)
T ss_pred HHHHHHHH-CCCEEEEEEEe
Confidence 99988876 89999887765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=131.88 Aligned_cols=159 Identities=23% Similarity=0.308 Sum_probs=112.7
Q ss_pred HHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHH
Q 035870 586 ELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQL 665 (842)
Q Consensus 586 ~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~ 665 (842)
+.....+||.|.|.+|..++. +..-.+++.+ ..++++|||+|||+|.+++.+++....+|+++|+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT---------~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av 197 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTT---------RLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV 197 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHH---------HHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH
T ss_pred CcEEEEECCCCcccCCCCHHH---------HHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH
Confidence 344567899999887765432 1222223333 467889999999999999999987445899999999999
Q ss_pred HHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc
Q 035870 666 KYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE 745 (842)
Q Consensus 666 ~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~ 745 (842)
+.|+++++.+++.+++.+. ...+. ..++||+|++|-..+- +..++..+.++|||||+++++.+....
T Consensus 198 ~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~~v-----L~~l~~~~~~~l~~~G~lIlSGIl~~~----- 264 (295)
T PF06325_consen 198 EAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILADV-----LLELAPDIASLLKPGGYLILSGILEEQ----- 264 (295)
T ss_dssp HHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-HHH-----HHHHHHHCHHHEEEEEEEEEEEEEGGG-----
T ss_pred HHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCHHH-----HHHHHHHHHHhhCCCCEEEEccccHHH-----
Confidence 9999999999999877653 22222 2389999999855443 577888899999999999997764321
Q ss_pred ccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 746 YRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 746 ~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
..++.+++. + ||++......+.
T Consensus 265 --------------------~~~v~~a~~-~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 265 --------------------EDEVIEAYK-Q-GFELVEEREEGE 286 (295)
T ss_dssp --------------------HHHHHHHHH-T-TEEEEEEEEETT
T ss_pred --------------------HHHHHHHHH-C-CCEEEEEEEECC
Confidence 345556664 4 999887766543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=117.61 Aligned_cols=106 Identities=26% Similarity=0.502 Sum_probs=89.8
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchh
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMI 706 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~ 706 (842)
|.+|||+|||+|.++..+++....+++|+|+++..++.+++++...++.++++++++|+.+.. ++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999988438999999999999999999999999889999999988775 56899999999877
Q ss_pred hhcC------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 EAVG------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.... .+....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6431 1235788999999999999999854
|
... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-12 Score=130.72 Aligned_cols=108 Identities=22% Similarity=0.369 Sum_probs=88.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.+++.++++++++|+.+..++++||+|+++...
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45679999999999999999987 56899999999999999999999999877899999998553344589999998431
Q ss_pred ------hhcC-----------------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 ------EAVG-----------------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ------~~~~-----------------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++. -+.+..+++++.++|+|||++++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 1234678999999999999999853
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=121.53 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=92.3
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEccccCCccCCCccE
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL-IRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~d~~~~~~~~~fD~ 699 (842)
+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.+++++..+++.++ +.++++|..+...+.+||+
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 93 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDV 93 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceE
Confidence 344444578889999999999999999998 89999999999999999999998887544 8999999766544458999
Q ss_pred EEEcchhhhcC-------------------hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 700 IISCEMIEAVG-------------------HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 700 i~s~~~~~~~~-------------------~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+++..+.+.+ ...+..+++++.++|||||.+++..
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99986653311 2235678999999999999988753
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=122.46 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=91.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~~ 695 (842)
..+++.+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.++++++..++. +++++.+|+.+. + ...
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCC
Confidence 35677888889999999999999999999876 5689999999999999999999988885 799999998652 2 224
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+|.|+... ...+..+++++.++|||||++++...
T Consensus 109 ~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 568776532 12468999999999999999999764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=126.38 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=88.4
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s~ 703 (842)
+..+|||||||+|.++..++++ ++.+|+|+|+|+++++.|++++...++. +++++++|+.+++ +++++|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 6789999999999999999999998886 8999999997653 34689999998
Q ss_pred chhhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+.... ..+.++++++++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 654332211 12679999999999999999854
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=125.91 Aligned_cols=110 Identities=22% Similarity=0.199 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
....+++.+.++++++|||||||+|.++..+++. ..+|+++|+++++++.|+++++..++. ++++..+|..+.. ..+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCC
Confidence 3456777888899999999999999999988877 469999999999999999999998886 6999999976543 447
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|++...+++++ +.+.+.|+|||++++...
T Consensus 144 ~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 899999987766553 356789999999998654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=129.47 Aligned_cols=105 Identities=23% Similarity=0.375 Sum_probs=86.9
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh--
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI-- 706 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~-- 706 (842)
..+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.+++.++++++++|+.+..++++||+|+|+...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 368999999999999999987 57899999999999999999999999877899999998654344689999998421
Q ss_pred ----h-------hcC----------hhhHHHHHHHHHhccccCcEEEEE
Q 035870 707 ----E-------AVG----------HEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ----~-------~~~----------~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
. |-+ -+.+..+++++.++|+|||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 111 123568899999999999999984
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=131.26 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=95.8
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~ 695 (842)
.+++.+....+..+||||||+|.++..+|++ ++..++|+|+++.+++.|.+++...++. ++.++++|+..+. +++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence 4455555566779999999999999999998 7789999999999999999999999986 7999999987652 678
Q ss_pred CccEEEEcchhhhcChhh----HHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEF----MEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~----~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++|.|+++....+....+ .+.++++++|+|||||.+.+.+-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999999976544432211 26899999999999999999653
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-12 Score=138.59 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=46.4
Q ss_pred eEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 207 WLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 207 ~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.|....-...+++.|.+.+++.|++|+++++|.+|..++++ +.|.+++++++.||.||+|+..
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 33334567889999999999999999999999999998888 7899977779999999999764
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.4e-12 Score=122.75 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL- 691 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~- 691 (842)
-..+..+++.+.++||++|||||||+|..+..+++..+ .+|+++|+.++.++.|+++++..++. +|+++++|...-
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcc
Confidence 35567889999999999999999999999999998733 47999999999999999999999886 899999996554
Q ss_pred ccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 ~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+..++||+|++......++. .+.+.||+||++++-.-
T Consensus 137 ~~~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 35678999999988876653 35566899999998543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=121.40 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=98.1
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~ 696 (842)
+.+.++++++|||+|||+|.++.++++.. ..+|+++|+|+.+.+...+.++.. .+|.+++.|++... ..++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC
Confidence 45568999999999999999999999984 368999999998665555544332 37899999986521 2358
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHH----HHH
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRI----TSA 772 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~----~~~ 772 (842)
||+|++... .++ +...++.+++++|||||.+++. +...... .-|.++++ ++.
T Consensus 203 vDvV~~Dva---~pd-q~~il~~na~r~LKpGG~~vI~-ika~~id-------------------~g~~pe~~f~~ev~~ 258 (293)
T PTZ00146 203 VDVIFADVA---QPD-QARIVALNAQYFLKNGGHFIIS-IKANCID-------------------STAKPEVVFASEVQK 258 (293)
T ss_pred CCEEEEeCC---Ccc-hHHHHHHHHHHhccCCCEEEEE-Eeccccc-------------------cCCCHHHHHHHHHHH
Confidence 999999763 122 3556777999999999999993 2221100 11223332 355
Q ss_pred HhhcCCcEEEEEEecCc
Q 035870 773 MSVASRLCVEQVENIGI 789 (842)
Q Consensus 773 ~~~~~gf~v~~~~~~~~ 789 (842)
+.+ +||++++..++.+
T Consensus 259 L~~-~GF~~~e~v~L~P 274 (293)
T PTZ00146 259 LKK-EGLKPKEQLTLEP 274 (293)
T ss_pred HHH-cCCceEEEEecCC
Confidence 665 8999888887754
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=128.23 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=89.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-ccCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-AKAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~ 695 (842)
+.+.+.+ .++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++......-+|.++++|+.+. +...
T Consensus 55 ~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 55 DEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred HHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 4444444 467899999999999999999883 5899999999999999999987643222577899999773 3112
Q ss_pred Cc-----cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KY-----DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~f-----D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+ .++++..++.+++.+....+|++++++|+|||.+++..-
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 22 344444678888888889999999999999999998543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=115.43 Aligned_cols=122 Identities=26% Similarity=0.383 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHHHHcCCCC--CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 609 DLKAAQMRKVSLLIEKARVSK--GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 609 ~l~~aq~~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
.+...|.+..++.++.+.++. ..-|||||||+|..+..+... |...+|+|+|+.|++.|.++--+ -.++.+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~ 100 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILC 100 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeee
Confidence 345567777788888888776 667999999999999888776 88999999999999999974322 257888
Q ss_pred ccc-CCc-cCCCccEEEEcchhhh---------cChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 687 DYR-QLA-KANKYDRIISCEMIEA---------VGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 687 d~~-~~~-~~~~fD~i~s~~~~~~---------~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+- -+| ..+.||.+||+..+.+ ++...+..+|..++.+|++|++.+++...
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 864 455 6799999999877654 35555778999999999999999998654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-11 Score=116.60 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=95.8
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH------H-----cCCCCCeEEEEccccCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVK------E-----AGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~------~-----~~l~~~v~~~~~d~~~~ 691 (842)
..+...++.+||+.|||.|..+.+||++ |.+|+|+|+|+..++.+.+... . .--..+++++++|+.++
T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 4455567789999999999999999998 9999999999999999866320 0 00013799999999998
Q ss_pred cc----CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 692 AK----ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 692 ~~----~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++ .++||.|+-...+.+++.+...+|++.+.++|+|||.+++..+.
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 62 36899999999999999999999999999999999999987664
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.3e-12 Score=118.80 Aligned_cols=129 Identities=13% Similarity=0.067 Sum_probs=93.7
Q ss_pred EEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 656 TGITLSEEQLKYAEMKVKEAG--LQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 656 ~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
+|+|+|++|++.|+++.+..+ ...+++++++|+.+++ ++++||+|++..+++++.+ +..++++++|+|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 589999999999988765322 2347999999999998 6779999999999999976 8999999999999999999
Q ss_pred EEeecCCCcccccccCccchh--------------hhccc---CCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 733 LQFISIPDERYNEYRLSSDFI--------------KEYIF---PGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~--------------~~~i~---p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.++..++..+..... ..+. ..|-+ .-...|+.+++.+.+.+ +||+......+.
T Consensus 79 i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~-aGF~~~~~~~~~ 149 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQ-GWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALE-AGFSSACHYEIS 149 (160)
T ss_pred EEECCCCChHHHHHHH-HHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHH-cCCCcceEEECc
Confidence 9998876543221100 0000 01100 00135688888887776 899866665543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=117.66 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=98.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
..++..+++.||++|||.|.|+|.++.++|.. +..+|+.+|+.++.++.|++|++..++.++|++..+|+.+...+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 46888999999999999999999999999975 4479999999999999999999999999889999999998875559
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
||+|+. -+++ +-.++.+++++|||||.+++-.
T Consensus 164 vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEc
Confidence 999997 3455 7899999999999999999844
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=121.60 Aligned_cols=151 Identities=21% Similarity=0.310 Sum_probs=110.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCCeEEEEcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKE-A------G----LQDLIRLYLCD 687 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~-~------~----l~~~v~~~~~d 687 (842)
..+++.+..+++.+||..|||.|..+..||++ |.+|+|+|+|+.+++.+.+.... . + -.++|++.++|
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD 105 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD 105 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc
Confidence 34455577788899999999999999999998 89999999999999998543221 0 0 02368999999
Q ss_pred ccCCcc--CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCC
Q 035870 688 YRQLAK--ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 688 ~~~~~~--~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~ 765 (842)
+.++++ .++||+|+-...++.++.+..++|.+.+.++|||||.+++.++..+..... ...| --+
T Consensus 106 fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~----GPPf----------~v~ 171 (218)
T PF05724_consen 106 FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME----GPPF----------SVT 171 (218)
T ss_dssp TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS----SSS--------------
T ss_pred cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC----CcCC----------CCC
Confidence 999873 258999999999999999999999999999999999966655543322110 1111 124
Q ss_pred HHHHHHHHhhcCCcEEEEEEe
Q 035870 766 LSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~ 786 (842)
.+++.+.+. .+|+++.++.
T Consensus 172 ~~ev~~l~~--~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG--PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT--TTEEEEEEEE
T ss_pred HHHHHHHhc--CCcEEEEEec
Confidence 567766655 5899888776
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-11 Score=125.79 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=87.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch--
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM-- 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~-- 705 (842)
+..+|||+|||+|.+++.+++. ++.+|+++|+|+++++.|+++++.+++.++++++++|+.+..+..+||+|+|+..
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC
Confidence 3369999999999999999987 5689999999999999999999999987679999999866433348999999732
Q ss_pred -----------hhhcCh----------hhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 -----------IEAVGH----------EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 -----------~~~~~~----------~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.|-+. +.+..+++++.++|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 122211 246788999999999999998854
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=112.56 Aligned_cols=68 Identities=37% Similarity=0.606 Sum_probs=52.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCC-CchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV-TYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||+|||+|||+|+++|.+|+|+|++..+||-+. .|.+.|+.. -.....++++++|++.+..
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~~ 99 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEEE 99 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCcceec
Confidence 4899999999999999999999999999999999999543 344444321 2334557788888775433
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=126.67 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT----GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~----~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s 702 (842)
.+..+|||||||+|.++..+++.. +++++|+|+|+++++.|+++. .++++.++|..+++ ++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 456789999999999999998762 247999999999999998763 26899999999988 6789999999
Q ss_pred cchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 703 CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+.. +..+++++|+|||||++++...
T Consensus 158 ~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA---------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC---------CCCHHHHHhhccCCCEEEEEeC
Confidence 754 1235789999999999998653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=125.34 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
.....+++.++++++++|||||||+|.++..+++..+ .+|+++|+|+++++.|+++++..++. ++.++++|..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~ 145 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc
Confidence 3445777888889999999999999999999998743 47999999999999999999998874 7999999987655
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..++||+|++...+++++ ..+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 446899999986665543 23567899999988854
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=131.15 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++|+.+++|++|..+++++.+.+.+|+++.||.||.|....
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 3445566677777999999999999988877765445567789999999998653
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=118.58 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
++..+.++.. ++++.+|||||||+|.++..+++.. +++|+|+|+++ + ..++ +++++++|+.+.+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~ 105 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELV 105 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHH
Confidence 4455666666 5789999999999999999999883 46999999998 1 1233 6899999998842
Q ss_pred --------cCCCccEEEEcchhhhcChhh---------HHHHHHHHHhccccCcEEEEEeec
Q 035870 693 --------KANKYDRIISCEMIEAVGHEF---------MEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 --------~~~~fD~i~s~~~~~~~~~~~---------~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+++||+|+|+.+.++.+... ...+++++.++|||||.+++..+.
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 357899999987665544321 256899999999999999996543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=114.88 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+++.+|||+|||+|.++..++++ .+.+|+++|+|+.+++.++++. .+++++++|+.+...+++||+|+++..+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 45679999999999999988876 3579999999999999998863 2689999999987755789999999998
Q ss_pred hhcChhh------------------HHHHHHHHHhccccCcEEEEE
Q 035870 707 EAVGHEF------------------MEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ~~~~~~~------------------~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.|.+.+. ...+++....+|+|+|.+.+.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 8864431 245677788899999977664
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=127.55 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=95.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
..+...+.+.+|++|||+|||+|..+.++++.. +.+|+++|+|+.+++.++++++..|+. ++++++|..+++ ..
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhccc
Confidence 345567788899999999999999999999883 369999999999999999999998874 789999998764 24
Q ss_pred CCccEEEEcchhh------hc-------Ch-------hhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 695 NKYDRIISCEMIE------AV-------GH-------EFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 695 ~~fD~i~s~~~~~------~~-------~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++||.|++..... +- .. +....+++.+.++|||||++++.+++..
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 6899999654221 11 11 1135789999999999999999887644
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=120.25 Aligned_cols=116 Identities=23% Similarity=0.385 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
.++.+++.+. ..+.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.|++++...++. +++++++|+.+..+++
T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCC
Confidence 3344555543 34569999999999999999987 5679999999999999999999998886 7999999987644567
Q ss_pred CccEEEEcchhhh------cCh------------------hhHHHHHHHHHhccccCcEEEEE
Q 035870 696 KYDRIISCEMIEA------VGH------------------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 696 ~fD~i~s~~~~~~------~~~------------------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+||+|+++..+.. +.. ..+..+++++.++|+|||.+++.
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999999754321 111 11357889999999999999984
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=123.92 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=84.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
+++.+|||+|||+|.+++.+++. ++++|+++|+|+++++.|+++++..+. +++++++|+.+.. ..++||+|+|+.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 35679999999999999999876 678999999999999999999988774 7999999986543 346899999987
Q ss_pred hhhhc-----------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 705 MIEAV-----------------------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 705 ~~~~~-----------------------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..-.- +-+.+..+++++.+.|+|||.+++.
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53110 1123567888889999999998873
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=120.70 Aligned_cols=114 Identities=23% Similarity=0.374 Sum_probs=89.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
.++..+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++. .....+++++++|+.+....++||
T Consensus 99 ~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD 177 (275)
T PRK09328 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFD 177 (275)
T ss_pred HHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCcee
Confidence 4444455567889999999999999999988 46899999999999999999987 334458999999986543447899
Q ss_pred EEEEcchhhh------c------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 699 RIISCEMIEA------V------------------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 699 ~i~s~~~~~~------~------------------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+|+++....- + +-+.+..+++++.++|||||++++.
T Consensus 178 ~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 178 LIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999754211 1 1123577889999999999999983
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=131.06 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=86.5
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
++.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.|++++..+++.++++++++|+.+..+.++||+|+|+...-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 4568999999999999999877 678999999999999999999999998878999999976533346899999975321
Q ss_pred --------------hc----------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 --------------AV----------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 --------------~~----------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
|- +-+.+..+++++.++|+|||.+++.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 10 1123566788999999999999884
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=126.28 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=97.2
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
.+...+.+++|.+|||+|||+|+.+.++++.. +.+|+++|+|+.+++.+++++++.|+. +++++++|..+++ ..+
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhc
Confidence 34456778899999999999999999999873 579999999999999999999999986 6999999998775 357
Q ss_pred CccEEEEcc------hhhhcC-------hh-------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 696 KYDRIISCE------MIEAVG-------HE-------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 696 ~fD~i~s~~------~~~~~~-------~~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+||.|++.. ++..-+ .+ ...+++.++.++|||||+++..+++...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 899999742 222111 11 2367799999999999999999888654
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=126.93 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+++.|.+.+++.|++++++++|++|+.+++++.|.+.+| ++.||.||+|++.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 468999999999999999999999999998888888888877 799999999988763
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=121.41 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC-CCcEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG-DGSREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~A~p 268 (842)
.+-+.|++..++.|++++.++.|+.+..+++++.+.+. ++.++.|+.||.|..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG 149 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCC
Confidence 45556788888889999999999999999988654443 336899999999975
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-10 Score=122.57 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcE-EeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSR-EFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VV~A~p~~~ 271 (842)
+..++.+|++.++++|++|++|++|+.|++.+++ +.+.+.+|++ ++|+.||.+++.+.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH
Confidence 5689999999999999999999999999999985 5677888876 99999999987553
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-11 Score=113.63 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=112.7
Q ss_pred eEEEeccCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEEc
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIISC 703 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s~ 703 (842)
+|||||||-|.....+.+. ++ ..|.+.|.|+.+++..+++..... .++...+.|+..-. ..+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999998877 33 789999999999999998865443 46776777754322 56899999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchh-hhcccCCCC---CCCHHHHHHHHhhcCCc
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFI-KEYIFPGGC---LPSLSRITSAMSVASRL 779 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~p~~~---~~~~~~~~~~~~~~~gf 779 (842)
+++..++.+.+...+++++++|||||.+++.+...-+-....+....-+- +-|+.-+|. .-+.+++.+.+.+ +||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~-agf 230 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTK-AGF 230 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHh-ccc
Confidence 99999999999999999999999999999998876553322222111111 224444443 3356677666665 899
Q ss_pred EEEEEEe
Q 035870 780 CVEQVEN 786 (842)
Q Consensus 780 ~v~~~~~ 786 (842)
..+..+.
T Consensus 231 ~~~~~~~ 237 (264)
T KOG2361|consen 231 EEVQLEV 237 (264)
T ss_pred chhcccc
Confidence 8766543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=128.96 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=96.7
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+..+.+.+|++|||+|||+|+.+.++++.. +.+|+++|+|+++++.+++++++.|+. +|+++++|..+++++++|
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~f 319 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQP 319 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCC
Confidence 34456677899999999999999999998762 469999999999999999999999986 799999999887655789
Q ss_pred cEEEEc------chhh-------hcChh-------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 698 DRIISC------EMIE-------AVGHE-------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 698 D~i~s~------~~~~-------~~~~~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
|+|++. +++. +...+ ....++.++.++|||||++++.+++...
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 999963 2221 11111 2346899999999999999999887653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=112.05 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=87.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+|+.+++.+++++.. .++++++++|+.+++ ++.+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence 56778888889999999999999999999998 78999999999999999998854 248999999999987 44579
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|.|+++..++ +..+.+..+++. ..+.++|.++++.
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhc--CCCcceEEEEEEH
Confidence 9999987654 333333333332 1245888888864
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-10 Score=126.16 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=98.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
..+...+.+++|++|||+|||.|+.+.++++.. ..+|+++|+|+++++.++++++..|+. +|+++++|..+++
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccc
Confidence 345566788899999999999999999999873 369999999999999999999999986 6999999998765
Q ss_pred -cCCCccEEEEc------chhhhcChh--------------hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 693 -KANKYDRIISC------EMIEAVGHE--------------FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 693 -~~~~fD~i~s~------~~~~~~~~~--------------~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
..++||.|++. +++.+-++. ...++++++.++|||||+++..+++..
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 14689999974 344433321 146889999999999999999877654
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=116.17 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC-CcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD-GSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++++++++|+++..+++++.+...+ +.+++||.||.|+...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 556667777777799999999999999988887666543 4579999999998764
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=118.89 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=87.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
+++.+|||||||.|.++..+++. ++.+|+++|+++++++.|++++...+..++++++++|..+.. ..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999999999887 678999999999999999999865554468999999986653 236899999853
Q ss_pred hh-hhcCh-hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 705 MI-EAVGH-EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 705 ~~-~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.- ...+. -...+++++++++|+|||++++..+..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11 11111 123799999999999999999975543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=115.98 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=89.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~f 697 (842)
..++.+|||||||+|..++.++.. .+.+|+++|+++++++.|+++++.+|+.++++++.+|+.+.. +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 346779999999999988888876 357999999999999999999999999989999999987642 14689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+|+...- ...+..++..+.++|||||.+++....
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99997532 234778999999999999999986543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=117.29 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=94.4
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccE
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDR 699 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~ 699 (842)
..+.+++|++|||+|||+|+.+..+++.. ..+|+++|+|+.+++.++++++..++. +|++++.|..+++ ..++||+
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE
Confidence 45677899999999999999999998873 358999999999999999999999985 6999999988766 4467999
Q ss_pred EEEcc------hhhhcCh-------h-------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 700 IISCE------MIEAVGH-------E-------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 700 i~s~~------~~~~~~~-------~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
|++.. ++.+-++ + ....+++++.++|||||+++.++++...
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99742 2211111 1 2356899999999999999998877544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=127.24 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=97.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
..+...+.+.+|.+|||+|||+|+.+.++++.. +.+|+++|+|+++++.++++++..|+..++.+..+|..+.+ ..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 456677888899999999999999999999873 47999999999999999999999998644455777766543 35
Q ss_pred CCccEEEEc------chhhhcChh--------------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 695 NKYDRIISC------EMIEAVGHE--------------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~~--------------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
++||.|++. +++.+.++- ....+++++.++|||||++++++++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 789999963 345444331 1467899999999999999999888654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-10 Score=107.72 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=117.7
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c------CCCccE
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K------ANKYDR 699 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~------~~~fD~ 699 (842)
+.+|||||||||..+.++|++ +..+..-.|+++......+..+.+.++++-..-+..|+.+.+ . .++||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 335999999999999999999 788999999999998888888888887633345566765543 1 358999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc--cCccchhhhcccCCCCCCCHHHHHHHHhhcC
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY--RLSSDFIKEYIFPGGCLPSLSRITSAMSVAS 777 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 777 (842)
|+|+.|+|-++-+..+.+|+.+.++|+|||.+++-.....+..+... ..-..+++. --|..-+..++++.+...+ .
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~-rdp~~GiRD~e~v~~lA~~-~ 183 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS-RDPEWGIRDIEDVEALAAA-H 183 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc-CCCCcCccCHHHHHHHHHH-C
Confidence 99999999999888999999999999999999996554444333211 111222222 2365567788887766555 8
Q ss_pred CcEEEEEEecC
Q 035870 778 RLCVEQVENIG 788 (842)
Q Consensus 778 gf~v~~~~~~~ 788 (842)
||++++..++.
T Consensus 184 GL~l~~~~~MP 194 (204)
T PF06080_consen 184 GLELEEDIDMP 194 (204)
T ss_pred CCccCcccccC
Confidence 99988777654
|
The function of this family is unknown. |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-10 Score=111.84 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC---CCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcC
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA---DKGCTIVCGDGSREFYNSCVMALHAPDALKILGN 278 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~ 278 (842)
..-+..+...+++.|+.++.+..|+.+... +..+.|.|.+|..+.|+.+|+|+.+|.. ++|++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcCc
Confidence 356667777777889999999999999854 3458999999988999999999999955 45554
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.7e-10 Score=111.79 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..+..|+..+++.||++|||.|.|+|.++..+++. +..+|+..|+.++.++.|+++++..|+.++|++.+.|+.+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34567889999999999999999999999999987 567999999999999999999999999999999999985422
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhcc-ccCcEEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLL-AEDGLLVLQ 734 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~L-kpgG~~~~~ 734 (842)
.+..+|.|+.- +++ +-.++..+.+.| ||||++++-
T Consensus 107 ~~~~~~~~DavfLD-----lp~--Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 107 DEELESDFDAVFLD-----LPD--PWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp STT-TTSEEEEEEE-----SSS--GGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccccCcccEEEEe-----CCC--HHHHHHHHHHHHhcCCceEEEE
Confidence 23689999973 444 567788899999 899999984
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-10 Score=115.60 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=82.9
Q ss_pred eEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh---
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE--- 707 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~--- 707 (842)
+|||||||+|.+++.++.+ +.++|+|+|+|+++++.|++++..+++ .++.++++|..+-.. ++||+||||...-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc
Confidence 8999999999999999998 556999999999999999999999998 577777778544332 5999999985320
Q ss_pred --hc------------------ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 708 --AV------------------GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 708 --~~------------------~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+. |-+-...++.++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 00 11346788899999999999998853
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=106.87 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=99.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-CCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-ANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~i~s~~~~~ 707 (842)
...+.||+|+|.|..+..+....-.+|..+|.++..++.|++.+... .....++++.-..++.| .++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 35699999999999999886655679999999999999999876541 12235788888888874 47999999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeecCCCc--ccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE--RYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
|+.++++.++|+.++..|+|+|.+++-+-..... .++.-. ... .-+...+.+.+.+ +|++++..+
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~D--sSv----------TRs~~~~~~lF~~-AGl~~v~~~ 200 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEED--SSV----------TRSDEHFRELFKQ-AGLRLVKEE 200 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTT--TEE----------EEEHHHHHHHHHH-CT-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCcc--Cee----------ecCHHHHHHHHHH-cCCEEEEec
Confidence 9999999999999999999999999965443332 111111 111 1245566666665 999998765
Q ss_pred e
Q 035870 786 N 786 (842)
Q Consensus 786 ~ 786 (842)
.
T Consensus 201 ~ 201 (218)
T PF05891_consen 201 K 201 (218)
T ss_dssp E
T ss_pred c
Confidence 4
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=125.44 Aligned_cols=119 Identities=24% Similarity=0.284 Sum_probs=95.5
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
.+...+.++++.+|||+|||+|..+..+++.. +.+|+++|+|+++++.++++++..|+. +++++++|+.++. ..+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcc
Confidence 44556777899999999999999999999873 579999999999999999999999986 5999999998764 226
Q ss_pred CccEEEEcch------hhhcCh-------h-------hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 696 KYDRIISCEM------IEAVGH-------E-------FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 696 ~fD~i~s~~~------~~~~~~-------~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+||+|++... +.+-++ + ...++++++.++|||||+++..+++..
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 8999998643 111111 1 125689999999999999998776653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-10 Score=120.99 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=89.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~i~ 701 (842)
.++.+|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 368899999999999998877653449999999999999999999999986 48999999987753 246899999
Q ss_pred EcchhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 702 SCEMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 702 s~~~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++.....-.. ..+..+++.+.++|+|||.++..+++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9866432221 23667777889999999999986654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-10 Score=112.93 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=81.1
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~ 704 (842)
++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.++ ++++++|+.+.. ..++||+|+++.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 3468999999999999999877 56799999999999999999998765 478999976532 136899999986
Q ss_pred hhh------hcCh------------------hhHHHHHHHHHhccccCcEEEEE
Q 035870 705 MIE------AVGH------------------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 705 ~~~------~~~~------------------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
... .+++ +.+..+++.+.++|||||++++.
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 432 1111 12457888899999999999984
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.9e-10 Score=113.18 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=96.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+.......+..+|+|||+|.|.++..++++ |+.+++..|+ |+.++.+++ .++|+++.+|+.+-.+ . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc-c-c
Confidence 45566677778889999999999999999988 8899999999 888888887 3599999999873223 3 9
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccC--cEEEEEeecCCCcc
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAED--GLLVLQFISIPDER 742 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg--G~~~~~~~~~~~~~ 742 (842)
|+|+...++|+.+++....+|+++++.|+|| |+++|.+...++..
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999999999999999999999999 99999988876654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-09 Score=112.59 Aligned_cols=234 Identities=17% Similarity=0.156 Sum_probs=128.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEee--CCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVTF--DGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
|++-|||+|+|+|+||.+|-+. |.+|+|||+.+.+||.+.+... .||.+-.|-... ..+..+++|++.+--.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~--~~~eclwdLls~IPSl 80 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME--FHYECLWDLLSSIPSL 80 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc--chhHHHHHHHHhCCCC
Confidence 5788999999999999999987 5699999999999998877654 567665554332 3677788888876422
Q ss_pred ccccc----------------ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 035870 75 MEMSD----------------MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELES 138 (842)
Q Consensus 75 ~~~~~----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (842)
..+.. ....+...+|+.+...+ +-.++. +...++.++. ..
T Consensus 81 e~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~~~-----------~~~Ls~---k~r~eL~kL~----------l~ 136 (500)
T PF06100_consen 81 EDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDTDS-----------KFGLSE---KDRMELIKLL----------LT 136 (500)
T ss_pred CCCCCcHHHHHHHhccCCCCCcceeeeccCCccccccC-----------cCCCCH---HHHHHHHHHh----------cC
Confidence 22110 00000001111110000 000111 1112222221 11
Q ss_pred CCCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh--ccccccCCCCce-EEecCChh
Q 035870 139 NPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN--HHLLQLFGRPQW-LTVRWRSH 215 (842)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~gG~~ 215 (842)
......+.++.+|+....+...|...+-..+.-..|. |+..+.+|+.+ +.+.++-.-... ++.-.=+.
T Consensus 137 ~E~~L~~~~I~d~F~~~FF~SnFW~~W~T~FAFqpWh---------Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQye 207 (500)
T PF06100_consen 137 PEEDLGDKRIEDWFSESFFESNFWYMWSTMFAFQPWH---------SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYE 207 (500)
T ss_pred CHHHhCcccHHHhcchhhhcCchhHhHHHhhccCcch---------hHHHHHHHHHHHHHhcCCCCCccccccCccccHH
Confidence 1112257788888887766555443222211112222 56666555543 111111111111 11123367
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC---c-E-EEE-eCCCc--EE---eCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK---G-C-TIV-CGDGS--RE---FYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~---~-v-~V~-~~~G~--~~---~ad~VV~A~p~ 269 (842)
+++..|.+.|+++|+++++|++|+.|+.+.+ + + .++ ..+|+ ++ .-|.|+++...
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCc
Confidence 9999999999999999999999999987532 2 2 222 24554 22 46677777543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.7e-10 Score=97.42 Aligned_cols=101 Identities=30% Similarity=0.483 Sum_probs=85.3
Q ss_pred eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchhhhc
Q 035870 632 EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMIEAV 709 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~ 709 (842)
+|+|+|||.|.++..+++..+.+++++|+++++++.+++..... ...+++++..|+.+.. ..++||+|+++.++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999999998855789999999999999998644333 3347899999988876 45789999999999884
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+....+++.+.+.|||||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345899999999999999999885
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=115.98 Aligned_cols=108 Identities=27% Similarity=0.336 Sum_probs=85.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C--CCCeEEEEccccCCc--cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L--QDLIRLYLCDYRQLA--KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l--~~~v~~~~~d~~~~~--~~~~fD~i 700 (842)
+++.+||+||||+|..+..+++++ ..+|+++|+++++++.|++.+...+ . .++++++.+|..+.. ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 456799999999999999999874 4689999999999999999886432 2 458999999987654 35799999
Q ss_pred EEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEe
Q 035870 701 ISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++...-...+.. .-.++++.+++.|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 996432222111 23788999999999999999864
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=104.64 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 035870 610 LKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (842)
....+-+.+..+++.. ...+||||||++|..++.+|+. .+++|+.+|++++..+.|++.++..|+.++|+++.+|
T Consensus 29 i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd 105 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-
T ss_pred cCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 3444445555555544 4559999999999999999987 3689999999999999999999999999999999999
Q ss_pred ccCCc----c---CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 688 YRQLA----K---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 688 ~~~~~----~---~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+.+.- . .++||.|+.-. ...++..++..+.++|+|||.+++......
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred cHhhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 86632 1 35899999854 234588999999999999999999765543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=119.82 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...++..|++.+.++ |++|+.+++|++|+.. .|+|.+| ++.||+||+|+.++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 457888898888765 9999999999999753 6778877 578999999998874
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=127.09 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=88.2
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
++.+|||+|||+|.+++.+++....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999999873347999999999999999999999986 58999999986643 2468999999754
Q ss_pred hhhc---------ChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 706 IEAV---------GHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 706 ~~~~---------~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
...- ....+..++..+.++|+|||.+++.+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2110 112467889999999999999988543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=106.23 Aligned_cols=113 Identities=26% Similarity=0.299 Sum_probs=94.9
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ccccCCc---cCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL-CDYRQLA---KANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~-~d~~~~~---~~~~ 696 (842)
..+...+..+|||||++.|.-++.+|.. + +.++|.+|+++++.+.|++++++.|+.++|+++. +|..+.- ..++
T Consensus 53 ~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~ 132 (219)
T COG4122 53 LLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGS 132 (219)
T ss_pred HHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCC
Confidence 3344457789999999999999999988 4 6799999999999999999999999999999999 5865544 2589
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
||+|+.- ....+++.+|..+-++|+|||.+++..+..+.
T Consensus 133 fDliFID-----adK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 133 FDLVFID-----ADKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred ccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 9999973 23346899999999999999999997766553
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=118.94 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhhh----cC--ceEEeCCCeeEEEeCCC-cEEEEeCCCcEEeCCEEEEccChHHH
Q 035870 214 SHSYVNKVRKQLES----WG--CQIRTSSEVCSVLPADK-GCTIVCGDGSREFYNSCVMALHAPDA 272 (842)
Q Consensus 214 ~~~l~~~L~~~l~~----~G--~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~A~p~~~~ 272 (842)
...++..|++.+++ +| ++|+++++|+.|+.+++ .+.|+|.+| ++.||.||+|+.++..
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 45789999999988 77 77999999999998844 578999888 7999999999988754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=106.77 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=77.2
Q ss_pred HHHHHc-CCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 620 LLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 620 ~l~~~l-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
.+.++. .++++.+|||||||+|.++..+++.. ..+|+++|+|+.+ .. .+++++++|+.+..
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHH
Confidence 344433 45789999999999999999998873 4589999999864 12 26888999987632
Q ss_pred -----cCCCccEEEEcchh--------hhcC-hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 -----KANKYDRIISCEMI--------EAVG-HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 -----~~~~fD~i~s~~~~--------~~~~-~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.++||+|++.... +|.. .+....+++++.++|+|||++++..
T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 34689999996532 2211 1224788999999999999999964
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=109.04 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=91.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~f 697 (842)
..+..+||||||++|..++.+|+. .+.+|+++|.+++.++.|++++++.|+.++|+++.+|+.+.. ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 345679999999999999999986 356899999999999999999999999999999999976542 13689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|.|+.-.- ..++..+++.+.++|+|||.+++..+...
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 99997532 34689999999999999999999765443
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-09 Score=116.18 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++|+++++|++|+.+++++.|++.+|+++.||.||.|....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 5666777777777999999999999999888899999999899999999998754
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=107.33 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=76.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR----TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
.+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++.. +++++++|+.+.+.+++||+||+|.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 3679999999999999999875 24689999999999999997752 5889999998766557999999998
Q ss_pred hhhhcC----------hhhHHHHHHHHHhccccCcE
Q 035870 705 MIEAVG----------HEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 705 ~~~~~~----------~~~~~~~~~~~~~~LkpgG~ 730 (842)
.+.-.. ......+++.+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 765322 12256688888887777665
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-09 Score=102.57 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=91.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-----Cc-cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-----LA-KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-----~~-~~~~fD~i 700 (842)
..+..+||+|||+|.++..++.. +.++|++||.|+.++..|.+|++.+++.+++.+++-+.+. .+ ..+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 45568999999999999999887 7899999999999999999999999999999988665432 22 45899999
Q ss_pred EEcchhh------hc------------------ChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 701 ISCEMIE------AV------------------GHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 701 ~s~~~~~------~~------------------~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+||...- .+ +.+.+..++.-+.|+|+|||.+.+.....+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 9986420 00 2234667788899999999999997765543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=105.31 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=76.1
Q ss_pred CCCC-eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 628 SKGQ-EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 628 ~~~~-~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
.++. .++|+|||+|..++.+|+. -.+|+|+|+|++|++.|++.....-.....++...+..++. .+++.|+|++..+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3444 7899999999888888877 56999999999999998875322111111233333344444 5789999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCc-EEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDG-LLVL 733 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG-~~~~ 733 (842)
+|++. ++.++++++|+||+.| .+.+
T Consensus 110 ~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 99996 5899999999999866 6555
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-09 Score=115.69 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 212 WRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
+....+.+.|.+.+++.|++|+++++|++|..+++.+.|++ +++++.||.||+|++...
T Consensus 102 ~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 102 DSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 34578999999999999999999999999988877788887 455899999999998653
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-09 Score=107.28 Aligned_cols=39 Identities=44% Similarity=0.707 Sum_probs=36.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++||+||+.|+++|.+|+|+|++..+||.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 389999999999999999999999999999999998743
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-09 Score=115.15 Aligned_cols=55 Identities=16% Similarity=0.011 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++++.+++|+.|..+++++.+...++.++.||.||.|....
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 3444566777777999999999999988777775433455579999999997653
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=108.24 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=141.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee---------------------CCeeeecceEeecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF---------------------DGVDLDLGFMVFNRVT 60 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~---------------------~g~~~d~G~~~~~~~~ 60 (842)
||||+|-|+.-.-.|..|++.|.+|+.+|+++.-||..+|... ..+.+|+-+..+. .
T Consensus 6 DviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~--a 83 (438)
T PF00996_consen 6 DVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY--A 83 (438)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE--T
T ss_pred eEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh--c
Confidence 8999999999999999999999999999999999999999763 1267777777773 4
Q ss_pred chhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhh-c
Q 035870 61 YPNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEEL-E 137 (842)
Q Consensus 61 ~~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (842)
...+.+++-+-++...... ..-.+.+.+++....+. .-...+. ...+... ..+.+.+|.....++.... .
T Consensus 84 ~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~--sr~dvf~--s~~lsl~---eKR~lmkFl~~v~~~~~~~~~ 156 (438)
T PF00996_consen 84 RGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPC--SREDVFK--SKLLSLF---EKRRLMKFLKFVANYEEDDPS 156 (438)
T ss_dssp TSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--S--SHHHHHC---TTS-HH---HHHHHHHHHHHHHHGCTTBGG
T ss_pred cCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCC--CHHHhhc--CCCccHH---HHHHHHHHHHHHhhcccCCcc
Confidence 5577788777777655432 12223334444433322 1111111 1112221 2233334433333332111 1
Q ss_pred CCCCC-CccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhc-cccccCCCCceEEecCChh
Q 035870 138 SNPDI-DRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNH-HLLQLFGRPQWLTVRWRSH 215 (842)
Q Consensus 138 ~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gG~~ 215 (842)
..... ....++.+++++.++++...+.+...+ +++..+ ..+ ..|+...+.-+..+ ...+.++...+.++..|.+
T Consensus 157 ~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~~-~~~-~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~G 232 (438)
T PF00996_consen 157 THKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLDD-SYL-TEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLG 232 (438)
T ss_dssp GSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSSS-GGG-GSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TT
T ss_pred hhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccCc-ccc-cccHHHHHHHHHHHHHHHhccCCCCEEEEccCCc
Confidence 11111 135789999999988877655443322 222221 111 22333322222211 1123455668899999999
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-E-EEEeCCCcEEeCCEEEEc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-C-TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VV~A 266 (842)
.|++++++...=.|+...+|++|.+|..+.++ + .|.+ +|+++.|++||..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 99999999887789999999999999985544 3 4554 8889999999964
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=119.20 Aligned_cols=112 Identities=15% Similarity=0.305 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
..++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|+++++.+++. +++++++|+.+..
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhh
Confidence 45567777777888999999999999999999987 689999999999999999999998885 7999999986532
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.+++||+|+++..-.- ....++.+.+ ++|++.++++.
T Consensus 362 ~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEe
Confidence 2467999999765332 2345566655 68999888854
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=103.68 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
.++.+|||+|||+|.+++.++.+...+|+++|++++.++.++++++.+++. +++++++|+.+.. ..++||+|+++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 467899999999999998765554579999999999999999999999875 7999999987643 2357999999988
Q ss_pred hhhcChhhHHHHHHHHHh--ccccCcEEEEEeec
Q 035870 706 IEAVGHEFMEEFFGCCES--LLAEDGLLVLQFIS 737 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~--~LkpgG~~~~~~~~ 737 (842)
+.. + .....++.+.. +|+|++.++++...
T Consensus 131 y~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRK-G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC-C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 543 2 24556666655 48999999986543
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.5e-09 Score=115.74 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++++++++|++|+.+++++.|++++|+++.||.||.|....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 6677788888888999999999999999988999999888899999999997654
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=103.42 Aligned_cols=39 Identities=46% Similarity=0.675 Sum_probs=32.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||||+|||+||++|+++|++|+|+|++..+||.+.
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred CEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 899999999999999999999999999999999998553
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=106.83 Aligned_cols=38 Identities=50% Similarity=0.822 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||+|||+||++|++.|++|+|+|++..+||.+
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 89999999999999999999999999999999988843
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=117.62 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCC----CCCeEEEeccCchHHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 035870 616 RKVSLLIEKARVS----KGQEVLEIGCGWGTLAIEIVKRT-----GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~----~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~ 686 (842)
.....+.+..... .+..|||||||+|.++..+++.. ..+|++|+.|+.+....+++++.+++.++|+++.+
T Consensus 169 AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~ 248 (448)
T PF05185_consen 169 AIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG 248 (448)
T ss_dssp HHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES
T ss_pred HHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3334444554433 25789999999999987776652 36999999999999888888899999999999999
Q ss_pred cccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 687 DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 687 d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
|++++....+.|+|||-.|-....+|-.++.+....|.|||||.++
T Consensus 249 d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 249 DMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999995579999999776555555678889999999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-09 Score=116.12 Aligned_cols=53 Identities=6% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.|.+.|.+.++. |++|+++++|++|+.++++|.|++++|+++++|.||.|-..
T Consensus 104 ~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~ 156 (391)
T PRK07588 104 DLAAAIYTAIDG-QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGL 156 (391)
T ss_pred HHHHHHHHhhhc-CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCC
Confidence 455555555543 68999999999999999999999999998999999999653
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-09 Score=116.44 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.| ++|+.+++|++|..+++++.|++++|+++.+|.||.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 67777888887777 99999999999999888999999999899999999986543
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=113.92 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=85.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCc---cCCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLA---KANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~---~~~~fD~ 699 (842)
.++..+||+||||.|..+..+++.++ .+|+.+|+++++++.|++.+... ++ .++++++.+|..+.. ++++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999998854 58999999999999999987653 23 348999999976543 2468999
Q ss_pred EEEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEee
Q 035870 700 IISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 700 i~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|++...-.+.+.. .-.++++.++++|+|||.++.+..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9986433222211 246889999999999999988653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=121.53 Aligned_cols=109 Identities=25% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHH--HHHc---CC-CCCeEEEEccccCCc--cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMK--VKEA---GL-QDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~--~~~~---~l-~~~v~~~~~d~~~~~--~~~~f 697 (842)
.+++++|||||||+|..+..++++++ .+|+++|+++++++.++++ +... .+ .++++++.+|.++.. .+++|
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 35667999999999999999998754 6999999999999999983 3221 22 248999999988743 34799
Q ss_pred cEEEEcchhhhcCh---hhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGH---EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~---~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+|++.......+. -.-.++++.+++.|||||.++++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999854332211 123578999999999999999975
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-09 Score=115.35 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.+ ++++++++|+++..+++++.|++.+|+++.||.||.|...+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcC
Confidence 46667777776655 89999999999998888899999999889999999997644
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=107.39 Aligned_cols=182 Identities=22% Similarity=0.164 Sum_probs=127.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
-.+..|||+|||+|.++..+|+....+|.+++.|+ |.++|++.++.+.+.++|+++.+.++++...++.|+|||-.|-.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 46789999999999999999998557899999865 99999999999999999999999999988558999999988877
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE--eecC----CCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ--FISI----PDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~--~~~~----~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
.+-+|.+-+..-..++.|||.|.++=. ++.. .+..|.+.-....|+.+--|.|-.+.++..- +..+-..--|
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~--a~~eYFrQPv 332 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGS--AHQEYFRQPV 332 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhh--hhhhhhcccc
Confidence 665554444444667999999998742 1111 1112222222345555555666555433211 1111112246
Q ss_pred EEEEecCccHHHHHHHHHHHHHHhHHHHHhc
Q 035870 782 EQVENIGIHYYQTLRCWRKNFMEKQSKILAL 812 (842)
Q Consensus 782 ~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~ 812 (842)
++..+.+.-.++++.+-.+.++...+++...
T Consensus 333 VDtFD~RilmA~sv~h~~dF~~~kEedlh~i 363 (517)
T KOG1500|consen 333 VDTFDIRILMAKSVFHVIDFLNMKEEDLHEI 363 (517)
T ss_pred ccccccceeeccchHhhhhhhhcccchheee
Confidence 7777777777888888777777666665544
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=115.44 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEc--cChHHHHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMA--LHAPDALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A--~p~~~~~~ll~ 277 (842)
.+.+.|.+.+. +++|+++++|++|+.++++|.|++++|+++.||.||.| +...+...+++
T Consensus 101 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~ 162 (386)
T PRK07236 101 VLYRALRAAFP--AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLP 162 (386)
T ss_pred HHHHHHHHhCC--CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCC
Confidence 34444555553 46899999999999998899999999999999999999 44444444433
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=104.42 Aligned_cols=103 Identities=28% Similarity=0.383 Sum_probs=83.8
Q ss_pred eEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEEcchh
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIISCEMI 706 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s~~~~ 706 (842)
.+||||||.|.+...+|+. ++..++|+|++...+..+.+++...+++ |+.++++|+..+. +++++|.|..++.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999988 8999999999999999999999999986 9999999988733 56899999998765
Q ss_pred hhcChhh------HHHHHHHHHhccccCcEEEEEe
Q 035870 707 EAVGHEF------MEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~~~~------~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
-+....+ -+.+++.++++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4443221 3789999999999999998853
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=109.15 Aligned_cols=83 Identities=24% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEc-cccCCc-----cCCCccEE
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLC-DYRQLA-----KANKYDRI 700 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~-d~~~~~-----~~~~fD~i 700 (842)
++.++||||||+|.+...++.+ ++++++|+|+++.+++.|+++++.+ ++.++|++++. |..++. +.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999888777766 7899999999999999999999999 79889988653 332221 35689999
Q ss_pred EEcchhhhcCh
Q 035870 701 ISCEMIEAVGH 711 (842)
Q Consensus 701 ~s~~~~~~~~~ 711 (842)
+||..++.-..
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99998775543
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=113.82 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH-HHHhhc
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
..+.+.|.+.+.+ .|++++++++|++|..+++++.|++.+|+++.||.||.|.+.+. +.+.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 3677888888877 48999999999999998889999998898899999999987543 344443
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-09 Score=109.62 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=82.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHH--H---HHcCC-CCCeEEEEccccCCc--cCCCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMK--V---KEAGL-QDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~--~---~~~~l-~~~v~~~~~d~~~~~--~~~~f 697 (842)
.....+||+||||.|..+..+.+.+ ..+|+++|+++++++.|++. + ....+ .++++++.+|..+.. ..++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3455699999999999999888873 47999999999999999962 1 11122 358999999988753 45789
Q ss_pred cEEEEcchh---hhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMI---EAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~---~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+|++...- .....-+-.++++.+++.|+|||.++++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999997421 11122234789999999999999999874
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=118.14 Aligned_cols=39 Identities=46% Similarity=0.719 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||+|||+||.+|.+.|++|+|||+++.+||..
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W 49 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW 49 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee
Confidence 689999999999999999999999999999999999954
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=111.80 Aligned_cols=31 Identities=52% Similarity=0.756 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
||+|||||+||++||+.|++.|++|+|+|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 8999999999999999999999999999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-09 Score=111.28 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~ 696 (842)
+.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++.+++ ++++++++|+.++. ..++
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~ 240 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEV 240 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCC
Confidence 33344444335689999999999999999996 78999999999999999999999998 48999999998764 3357
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|+++..-.-+. ..+.+.+.+ ++|++.++++
T Consensus 241 ~D~Vv~dPPr~G~~----~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 241 PDLVLVNPPRRGIG----KELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred CeEEEECCCCCCcc----HHHHHHHHH-cCCCeEEEEE
Confidence 99999986522221 233333333 6787777764
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=113.11 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCc-EEEEeC---CCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKG-CTIVCG---DGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~-v~V~~~---~G~--~~~ad~VV~A~p~~~ 271 (842)
...++++|++.+++.| ++|+++++|++|+.++++ |.|++. +|+ ++.|++||+|+..+.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 5689999999998887 799999999999986665 766643 353 689999999998774
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=112.67 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+.|.+.++ +.+|+++++|++|+.+++++.|++++|+++.+|.||-|-..
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~ 150 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGI 150 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCc
Confidence 45555666665 46899999999999988899999999999999999999653
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-09 Score=116.66 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.|.+.|.+.++ +..++++++|++|+.++++|.|++++|+++.||.||.|.....
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 57777777775 4578999999999998889999999998999999999976543
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=113.27 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEe---CCC--cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVC---GDG--SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~---~~G--~~~~ad~VV~A~p~~~ 271 (842)
...++.+|++.++++|++|+++++|++|+.+++ +|.|++ .+| .+++||+||+|+..+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 568999999999999999999999999998654 576653 234 2689999999998764
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.7e-09 Score=113.82 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeC-CCcEEeCCEEEEccC
Q 035870 215 HSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCG-DGSREFYNSCVMALH 268 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~A~p 268 (842)
..+.+.|.+.+.+.+ ++++.+++|+.++.+++.+.|+.+ +|++++||.||-|=.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCC
Confidence 367778888887767 899999999999999999888888 999999999999954
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.2e-09 Score=118.19 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe---CCCcEEeCCEEEEccChHH-HHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC---GDGSREFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
.+-+.|.+.+.+.|++|+++++|++|+.++++|.|+. .++++++||.||.|..... +.+.+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 3445667777777999999999999999988887776 5667899999999976554 334443
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-09 Score=117.39 Aligned_cols=55 Identities=29% Similarity=0.328 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.|++|+++++|++|+.+++++.|++++|+++.||.||.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 6777888888888999999999999999999999999999899999999997643
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=110.85 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=79.9
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC---------CCCCeEEEEccccCCc-----c-
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG---------LQDLIRLYLCDYRQLA-----K- 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~---------l~~~v~~~~~d~~~~~-----~- 693 (842)
++.+|||+|||-|+-..-.....-..++|+|+|++.++.|++|.++.. ..-...++.+|..... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999998887666655534689999999999999999993211 1124577888864322 2
Q ss_pred -CCCccEEEEcchhhhc--ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 694 -ANKYDRIISCEMIEAV--GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 694 -~~~fD~i~s~~~~~~~--~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
..+||+|-|..++|+. ..+....+++++.+.|||||+++...+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2599999999999987 4456788999999999999999997653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=114.29 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCC--cEEeCCEEEEccChH
Q 035870 211 RWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDG--SREFYNSCVMALHAP 270 (842)
Q Consensus 211 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G--~~~~ad~VV~A~p~~ 270 (842)
.++...++..|.+.+++.|++|+++++|++|..++++| .|.+ .+| ..+.|+.||+|+...
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 34556789999999999999999999999999877665 3444 233 357999999998753
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=106.68 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
|.+.+++.+.+|+++++|++|.+++++|.|++.+|+++.||+||+|+..
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 3333344477899999999999999999999999988999999999874
|
... |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=109.89 Aligned_cols=52 Identities=4% Similarity=-0.006 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
.|.+.|.+.+ ..|++++++++|++|+.++++|.|++++|++++||.||-|-.
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 3444444433 347899999999999988888999999999999999999954
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=100.13 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=95.1
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~ 707 (842)
...++||||+|.|..+..++.. -.+|+++|+|+.|....+++ |. +++ |..++. .+.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g~----~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----GF----TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----CC----eEE--ehhhhhccCCceEEEeehhhhh
Confidence 4568999999999999999887 45899999999886555543 43 333 333343 346899999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchhhhccc-CCCC-CCCHHHHHHHHhhcCCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFIKEYIF-PGGC-LPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-p~~~-~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
...+ +..++++|++.|+|+|++++... .|-..|-+... ...--.+.+- +|.. --.+..+.+.+.. +||+++..
T Consensus 163 Rc~~--P~~LL~~i~~~l~p~G~lilAvV-lP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p-~GF~v~~~ 238 (265)
T PF05219_consen 163 RCDR--PLTLLRDIRRALKPNGRLILAVV-LPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEP-AGFEVERW 238 (265)
T ss_pred ccCC--HHHHHHHHHHHhCCCCEEEEEEE-ecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHh-cCCEEEEE
Confidence 8866 89999999999999999998654 33333322211 0001111111 1111 1124455544554 89999887
Q ss_pred Eec
Q 035870 785 ENI 787 (842)
Q Consensus 785 ~~~ 787 (842)
...
T Consensus 239 tr~ 241 (265)
T PF05219_consen 239 TRL 241 (265)
T ss_pred ecc
Confidence 653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-09 Score=107.17 Aligned_cols=107 Identities=25% Similarity=0.304 Sum_probs=82.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
+.+.+||+||||+|.++..+++.. ..+|+++|+++++++.+++.+...+ + ..+++++.+|..+.. ..++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345599999999999999998874 4689999999999999999875532 1 247899999976542 247899999
Q ss_pred EcchhhhcChh--hHHHHHHHHHhccccCcEEEEE
Q 035870 702 SCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 702 s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+......-+.. ...++++.++++|+|||.++++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 86542221111 1468899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=115.64 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE---EEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC---TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++|+++++|++|..++++| .+...+|+ ++.|+.||+|+...
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 3688899999999999999999999998876653 34444543 58999999998754
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=114.76 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH-HHHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP-DALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~-~~~~ll~ 277 (842)
.+.+.|.+.+++.|++|+.+++|++|+.++++|.|++.+|+++.||.||.|...+ .+.+.+.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 5666777777777999999999999999999999999999889999999997643 3444443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=106.86 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=89.9
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
.+-.+..|||+|||+|.++...|+....+|+++|.|. +++.|++.+..+++.+.|+++.+.++++. |.++.|.|+|-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3557899999999999999999998556899999987 45999999999999989999999999887 668999999988
Q ss_pred hhhhcChh-hHHHHHHHHHhccccCcEEE
Q 035870 705 MIEAVGHE-FMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 705 ~~~~~~~~-~~~~~~~~~~~~LkpgG~~~ 732 (842)
|-..+=-+ -++.++-.=.+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 86665322 35666666779999999876
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=105.10 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cccCCc-cC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQLA-KA 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~-~~ 694 (842)
..+.+++...+++|+.|||==||||++.+.+... |++++|+|++..|++-|+.|++..++++ ..+... |+.+++ ++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 3356677778899999999999999999998876 9999999999999999999999998774 545555 999999 55
Q ss_pred CCccEEEEcchhhh------cC-hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEA------VG-HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~------~~-~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++|.|++-...-- .. ++-+.++|+.++++||+||++++..
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 57999999653211 11 3447899999999999999999854
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=121.76 Aligned_cols=107 Identities=21% Similarity=0.379 Sum_probs=84.7
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------CCeEEEEccccCCcc
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ---------------DLIRLYLCDYRQLAK 693 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~---------------~~v~~~~~d~~~~~~ 693 (842)
+.+|||+|||+|.+++.++++ +..+|+++|+|+++++.|+++++.++++ ++|+++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 568999999999999999988 4579999999999999999999886542 479999999876542
Q ss_pred --CCCccEEEEcchh--------------hhcC-------------------h---hhHHHHHHHHHhccccCcEEEEEe
Q 035870 694 --ANKYDRIISCEMI--------------EAVG-------------------H---EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 --~~~fD~i~s~~~~--------------~~~~-------------------~---~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..+||+||||... +|-+ + +.+..++.+..++|||||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2379999998531 1100 1 124678889999999999999854
Q ss_pred e
Q 035870 736 I 736 (842)
Q Consensus 736 ~ 736 (842)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 3
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=116.35 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+++.|++|+++++|++|+.+++++.|++.+|++++||.||.|....
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 4555677777777999999999999999999999988888889999999997543
|
|
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=111.18 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=55.2
Q ss_pred eEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 207 WLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 207 ~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+.+.+| ...++..|++.+++ |++|+.+++|++|+.+++++.|+|.+|+++.||+||+|+.++.
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 3444444 46899999999999 9999999999999998888999999997799999999998774
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=116.96 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCC--cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDG--SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G--~~~~ad~VV~A~p~~~ 271 (842)
...++.++++.+.++|++|+.+++|++|..+++++ .|++ .+| .++.||.||.|+.++.
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 45788888888899999999999999999987764 3443 233 3789999999999874
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=111.69 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
+-+.|.+.+.+.|++|+++++|++|+.+++++.|++.+|++++|+.||.|.....
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4445566677779999999999999999999888888888999999999987544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-09 Score=103.86 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=132.2
Q ss_pred hHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHH
Q 035870 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVK 649 (842)
Q Consensus 570 ~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (842)
..+..+.|++||.... ...+. ....|.-+|-..- .+.+..++-.+-.++++.++|+|||-|+-++-.-+
T Consensus 69 ~~~~~~~Va~HYN~~~---e~g~e-~Rq~S~Ii~lRnf-------NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~k 137 (389)
T KOG1975|consen 69 NESKSSEVAEHYNERT---EVGRE-KRQRSPIIFLRNF-------NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDK 137 (389)
T ss_pred ccchhHHHHHHHHHHH---HHhHh-hhccCceeehhhh-------hHHHHHHHHHHHhccccccceeccCCcccHhHhhh
Confidence 3444677999996332 22222 1123333321110 12223333333357889999999999998877766
Q ss_pred hcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEccccCC------c-cCCCccEEEEcchhhhc--ChhhHH
Q 035870 650 RTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----LIRLYLCDYRQL------A-KANKYDRIISCEMIEAV--GHEFME 715 (842)
Q Consensus 650 ~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~~~~------~-~~~~fD~i~s~~~~~~~--~~~~~~ 715 (842)
..-.+++|+||++..++.|++|.++..-.. .+.|+.+|...- + .+.+||+|-|.+++|+. ..+..+
T Consensus 138 AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 138 AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 533589999999999999999987532211 378899995321 1 33459999999888765 455678
Q ss_pred HHHHHHHhccccCcEEEEEeecCC---------------Ccc----ccccc----CccchhhhcccCC---CCCC----C
Q 035870 716 EFFGCCESLLAEDGLLVLQFISIP---------------DER----YNEYR----LSSDFIKEYIFPG---GCLP----S 765 (842)
Q Consensus 716 ~~~~~~~~~LkpgG~~~~~~~~~~---------------~~~----~~~~~----~~~~~~~~~i~p~---~~~~----~ 765 (842)
.+++++.+.|||||+++-+.+... +.. |.... ....|-.+|.|.- -..| .
T Consensus 218 ~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~ 297 (389)
T KOG1975|consen 218 IALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVP 297 (389)
T ss_pred HHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcceeee
Confidence 899999999999999998433210 000 11000 0122223333310 0011 2
Q ss_pred HHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHH
Q 035870 766 LSRITSAMSVASRLCVEQVENIGIHYYQTLRCWR 799 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~ 799 (842)
...+. .+.+..|++++..+.+-.-|..-+..|.
T Consensus 298 F~~l~-~lae~y~LeLv~~k~F~df~~e~~~~~~ 330 (389)
T KOG1975|consen 298 FPTLV-SLAEEYGLELVFVKPFADFYEEELKKNE 330 (389)
T ss_pred hHHHH-HHHHhcCcEEEEeccHHHHHHHhccccc
Confidence 23333 4444599999999988877777777773
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=102.47 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
-+.+..+++.. +..+|||||+++|.-++.+|+. .+.+|+.+|.+++..+.|++.++..|+.++|+++.+|+.+..
T Consensus 68 g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 68 GQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 34444444443 4569999999999999999976 467999999999999999999999999999999999976642
Q ss_pred ----c----CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 693 ----K----ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 693 ----~----~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
. .++||.|+.-.- .+.+..+++.+.++|+|||.+++..+-.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred HHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 1 268999997532 3457899999999999999999865443
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=109.94 Aligned_cols=60 Identities=12% Similarity=-0.125 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH-HHHHhh
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP-DALKIL 276 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~-~~~~ll 276 (842)
.+.+.|.+.+++.| ++++ ++.|++|..+++++.|++.+|+++.||.||.|...+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 56677878887777 8888 999999998888899999899889999999997654 233443
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=114.13 Aligned_cols=58 Identities=14% Similarity=-0.065 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC----cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG----SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VV~A~p~~~ 271 (842)
...++..++..++++|++++.+++|++|..+++.+.|++.++ .++.|+.||.|+.++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 357888888888899999999999999999887777776654 2589999999998874
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=95.07 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=35.0
Q ss_pred HHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 378 SLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 378 ~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
..-+.+.+-..|+|+|-+|.|+|+ ..+...|+..|+.|+..+
T Consensus 442 ngViG~HP~y~Nly~atGFsghGv-qqs~avgRAiaElIldG~ 483 (509)
T KOG2853|consen 442 NGVIGEHPLYTNLYMATGFSGHGV-QQSPAVGRAIAELILDGA 483 (509)
T ss_pred CCcccCCcceeeeeeeecccccch-hcchHHHHHHHHHHhcCc
Confidence 334444555679999999999999 899999999999999876
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=112.89 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhhh-cCceEEeCCCeeEEEeC-CCcEEEE---eCCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLES-WGCQIRTSSEVCSVLPA-DKGCTIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~-~~~v~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
...+.++|++.+.+ .|++|+++++|+.|.++ +++|.|+ +.+|+ ++.||+||+|+.++.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 45788999998864 48999999999999988 6678775 44553 689999999998775
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-08 Score=109.77 Aligned_cols=112 Identities=14% Similarity=0.223 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
..++.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|+++++.+++. +++++.+|+.+..
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHH
Confidence 34556667777788899999999999999999987 679999999999999999999999885 8999999987632
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+++||+|+....-.-+ ...+++.+.+ ++|++.++++
T Consensus 357 ~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence 23579999986552211 2455666554 7898877773
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=113.07 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCC-C--cEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGD-G--SREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~-G--~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+. +++++++++|++|+.+++++.|++.+ + .+++||.||.|....
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCC
Confidence 4666777777654 68999999999999988888887753 2 369999999996543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=93.51 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
..-.|.+|+|+|||||.+++.++-....+|+|+|+++++++.+++++.+ +..+|.++++|+.+.. +.||.++.|..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEECCC
Confidence 3446789999999999999988876447999999999999999999988 4458999999999998 88999999987
Q ss_pred hhh
Q 035870 706 IEA 708 (842)
Q Consensus 706 ~~~ 708 (842)
+-.
T Consensus 118 FG~ 120 (198)
T COG2263 118 FGS 120 (198)
T ss_pred Ccc
Confidence 643
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.9e-08 Score=103.44 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCC--cEEeCCEEEEccChHHHHHhhc
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDG--SREFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VV~A~p~~~~~~ll~ 277 (842)
.++.++|.+.+++.|+++..+++|.++..+++++. |.+.++ .++.||+||+|+.++....++.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 57889999999999999999999999999888865 665665 3799999999998884444433
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=95.73 Aligned_cols=114 Identities=23% Similarity=0.352 Sum_probs=86.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCK---------YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~---------v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (842)
..|+.....++++.|||--||+|++.+.++.. .+.. +.|+|+++++++.|+++++..++.+.+.+.+.|+
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 46677778889999999999999999998877 3444 8899999999999999999999988999999999
Q ss_pred cCCc-cCCCccEEEEcchhhh-cC-----hhhHHHHHHHHHhccccCcEEE
Q 035870 689 RQLA-KANKYDRIISCEMIEA-VG-----HEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 689 ~~~~-~~~~fD~i~s~~~~~~-~~-----~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
.+++ .++++|.|+++..+.. ++ .+-+..+++++.++|++...++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999 7789999999875432 12 2346788999999999933333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=112.75 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-c---EEEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-G---CTIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~---v~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++|+++++|++|..+++ + +.+.+.+|+ .+.++.||+|+...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 46889999999999999999999999998643 3 344444554 36899999998765
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-08 Score=106.14 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
+||+|||||+||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=109.50 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+-+.|.+.+++. |++++++++|++|+.+++++.|++.+|++++||.||-|-..
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~ 166 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGA 166 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCC
Confidence 4556677777664 78999999999999998899999999999999999999653
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=97.59 Aligned_cols=114 Identities=18% Similarity=0.305 Sum_probs=74.3
Q ss_pred HHHHcCCCCCCeEEEeccCch----HHHHHHHHh----c--CCEEEEEcCCHHHHHHHHHH------H--------HH--
Q 035870 621 LIEKARVSKGQEVLEIGCGWG----TLAIEIVKR----T--GCKYTGITLSEEQLKYAEMK------V--------KE-- 674 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G----~~~~~la~~----~--~~~v~gid~s~~~~~~a~~~------~--------~~-- 674 (842)
+++.....+.-+|+..||++| .+++.+.+. . ..+|+|+|+|+.+++.|++- + ++
T Consensus 23 ~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 23 LLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp -----CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred hccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 333333345679999999999 444545451 1 36999999999999999871 0 00
Q ss_pred ---cC--------CCCCeEEEEccccC-CccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 675 ---AG--------LQDLIRLYLCDYRQ-LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 675 ---~~--------l~~~v~~~~~d~~~-~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+ +..+|+|...|..+ .+..+.||+|+|..++-++..+....+++.+++.|+|||+|++.
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00 11579999999888 44668999999999999999999999999999999999999993
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-08 Score=111.47 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC---Cc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD---GS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~A~p~~~ 271 (842)
...++..+++.+.++|++|+.+++|++|..+++.+.|++.+ |+ ++.|+.||.|+.++.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 35788888888888999999999999999887777776653 53 689999999998874
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.8e-08 Score=107.84 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+...|.+.+.+. ++++ +.+.|+.|..+++++ .|.+.+|..+.|+.||+|+....
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 3455566666554 6787 566799998887775 58899999999999999998654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=94.86 Aligned_cols=110 Identities=20% Similarity=0.343 Sum_probs=78.1
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEccccCCc-----cCCCc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAG--LQDLIRLYLCDYRQLA-----KANKY 697 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-----~~~~f 697 (842)
...++.+|||+|||+|..++.+++. ...+|+.+|.++ .++..+.+++.++ ...++++...|..+.. ...+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3467889999999999999999988 678999999999 9999999999877 5668899998875522 34689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+|+...+++.- +..+.+++.+.++|+|+|.+++....+
T Consensus 121 D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999874 558999999999999999977755433
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-08 Score=108.24 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEE-EeCCCc--EEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTI-VCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V-~~~~G~--~~~ad~VV~A~p~~ 270 (842)
++.+.|.+.+++.|++|+++++|++++.+++++.+ .+.+|+ ++.||.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 78899999999999999999999999988777654 344553 58999999998864
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=100.90 Aligned_cols=104 Identities=26% Similarity=0.301 Sum_probs=90.0
Q ss_pred CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEEcch
Q 035870 631 QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIISCEM 705 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s~~~ 705 (842)
-.+||||||.|.+...+|++ |...++|||+....+..|.+++.+.++. |+.+++.|+..+. ++++.|.|..++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 47999999999999999998 8899999999999999999999999997 8999999987654 5569999999876
Q ss_pred hhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
=-|.... -.+.+++.+.+.|||||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5444322 24789999999999999999843
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=105.16 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+|+.+++.+++++...+..++++++++|+.+.+.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 345668888888899999999999999999999987 779999999999999999999877766689999999987653
Q ss_pred CCccEEEEcchhh
Q 035870 695 NKYDRIISCEMIE 707 (842)
Q Consensus 695 ~~fD~i~s~~~~~ 707 (842)
..||.|+++....
T Consensus 100 ~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 PYFDVCVANVPYQ 112 (294)
T ss_pred cccCEEEecCCcc
Confidence 4789999976544
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=111.03 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=42.9
Q ss_pred HHHHHHHHhh-hcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLE-SWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~-~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.|.+.+. ..|++|+++++|++++.+++++.|++++|+++.||.||.|....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 3334444443 35899999999999999888889998899899999999997643
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=110.43 Aligned_cols=62 Identities=29% Similarity=0.461 Sum_probs=48.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC--CCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL--GGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||++||++|+.|++.|++|+|+|+++.. .+ +.++..+ .++..++++++|+.....
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~------------~~~a~~l----~~~~~~~l~~lGl~~~l~ 66 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG------------RIRAGVL----EQGTVDLLREAGVGERMD 66 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc------------ccceeEE----CHhHHHHHHHcCChHHHH
Confidence 48999999999999999999999999999998742 22 1122233 357779999999865543
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=108.48 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLES-WGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+ .|++++++++|+.|+.++++ +.|++++|+++.+|.||.|-...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 455556666543 47899999999999987766 47888899999999999996544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=108.04 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=130.7
Q ss_pred HhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHH-HHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 572 QARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLL-IEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l-~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
...+.++..|+...++|...+...++.+.- + +.....+. ......+ .-.....++..++|+|||.|....+++.-
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~--e~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f 131 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFGRI-P--EGNSNEMF-WIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF 131 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhccCc-c--chhHHHHH-HHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh
Confidence 445678899998889999988877766433 2 22223332 2222222 22344678889999999999999999988
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCc
Q 035870 651 TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG 729 (842)
Q Consensus 651 ~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG 729 (842)
.+++++|+|.++.++..+.......++.++..++.+|+.+.+ ++..||.+.+..+.+|.++ ....++++.+++||||
T Consensus 132 ~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~--~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 132 KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPD--LEKVYAEIYRVLKPGG 209 (364)
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCc--HHHHHHHHhcccCCCc
Confidence 779999999999999999999888888888888999999998 8899999999999999988 8999999999999999
Q ss_pred EEEEEeecCC
Q 035870 730 LLVLQFISIP 739 (842)
Q Consensus 730 ~~~~~~~~~~ 739 (842)
+++...+...
T Consensus 210 ~~i~~e~i~~ 219 (364)
T KOG1269|consen 210 LFIVKEWIKT 219 (364)
T ss_pred eEEeHHHHHh
Confidence 9999766543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=93.90 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=93.3
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEE
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRII 701 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~ 701 (842)
..-+||||.||.|.....+.+. +. .+|...|.|+..++..++.+++.|+++-++|.++|+.+.. .+...++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5569999999999999888777 43 6899999999999999999999999977799999987754 245689999
Q ss_pred EcchhhhcChhh-HHHHHHHHHhccccCcEEEEEe
Q 035870 702 SCEMIEAVGHEF-MEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 702 s~~~~~~~~~~~-~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++.+|.+++.. ....++.+.+.+.|||+++...
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999999865 5567999999999999999854
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=106.97 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=85.4
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~f 697 (842)
.+.+.+...++.+|||++||+|.+++.++.. +.+|+|+|+|+.+++.|+++++.+++. +++++++|+.+.. ..++|
T Consensus 224 ~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 301 (374)
T TIGR02085 224 TARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAP 301 (374)
T ss_pred HHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCC
Confidence 3334444345679999999999999999976 789999999999999999999999986 8999999987654 22569
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+|+.+..-..+. ..+++.+.+ ++|++.++++.
T Consensus 302 D~vi~DPPr~G~~----~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 302 ELVLVNPPRRGIG----KELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred CEEEECCCCCCCc----HHHHHHHHh-cCCCeEEEEEe
Confidence 9999988754332 445555543 78999888853
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-08 Score=107.66 Aligned_cols=54 Identities=9% Similarity=-0.013 Sum_probs=43.6
Q ss_pred HHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLES-WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+-..|.+.+.+ .+++|+.+++|++++.+++++.|++++|.+++||.||.|....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGAN 166 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 33445555443 2689999999999999999999999999999999999997644
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-08 Score=108.37 Aligned_cols=61 Identities=33% Similarity=0.513 Sum_probs=47.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
|||+|||||++||++|+.|+++|++|+|+|+++.+.- .|.. + ...++..+.++++|+....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-------------~g~g-i--~l~p~~~~~L~~lgl~~~l 61 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP-------------LGVG-I--NLLPHAVRELAELGLLDAL 61 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc-------------cCcc-e--eeCchHHHHHHHCCCHHHH
Confidence 7999999999999999999999999999999875421 0111 1 1245778888999886553
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.3e-08 Score=107.07 Aligned_cols=62 Identities=35% Similarity=0.440 Sum_probs=47.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
++|+|||||++||++|..|+++|++|+|+|+.+.+.- . |. .+ ...++..++++++|+.....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-------~------g~-gi--~l~~~~~~~L~~~Gl~~~l~ 64 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-------V------GA-GL--QLAPNAMRHLERLGVADRLS 64 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-------C------Cc-cc--eeChhHHHHHHHCCChHHHh
Confidence 5899999999999999999999999999999765421 1 11 01 12467889999999865543
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=106.01 Aligned_cols=33 Identities=48% Similarity=0.694 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
.||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999999999974
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=94.42 Aligned_cols=106 Identities=22% Similarity=0.400 Sum_probs=78.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcC------------------------------
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAG------------------------------ 676 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~------------------------------ 676 (842)
-.+..+|||||-.|.++..+|+.+++ .|.|+||++..++.|++.++..-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45678999999999999999999665 69999999999999999865311
Q ss_pred ----CCCCeEEEEcc-------ccCCccCCCccEEEEcch--hhhc--ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 677 ----LQDLIRLYLCD-------YRQLAKANKYDRIISCEM--IEAV--GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 677 ----l~~~v~~~~~d-------~~~~~~~~~fD~i~s~~~--~~~~--~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+++++.+...+ +.++ ....||+|+|..+ .-|+ +++.+..+|+++.++|.|||++++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 11122222222 2211 3468999998543 3344 5778999999999999999999983
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.3e-08 Score=107.85 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+.+. |++++.+++|+++..+++++.|++.+|++++||.||.|....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGAN 168 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 4556666666665 899999999999999888899999899899999999997644
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-08 Score=108.97 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 217 YVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 217 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+-+.|.+.+.+. |++|+++++|++|+.+++++.|++++|++++||.||.|-..
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~ 166 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGA 166 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCC
Confidence 444555555443 68999999999999988889999999999999999999764
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=112.77 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=46.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++||++|..|++.|++|+|+|+++...- . ..+. ...++..++++++|+....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~-------~-----~ra~----~l~~~~~e~l~~lGl~~~l 63 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVP-------Y-----SKAL----TLHPRTLEILDMRGLLERF 63 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-------C-----ccee----EecHHHHHHHHhcCcHHHH
Confidence 3899999999999999999999999999999765311 0 0111 1356788999999986543
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=110.89 Aligned_cols=61 Identities=31% Similarity=0.484 Sum_probs=45.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
||+|||||++||++|..|+++|++|+|+|+++..--.. .+..+ .++..++++++|+.....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~------------~~~~l----~~~~~~~l~~lgl~~~~~ 63 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG------------RGIGL----SPNSLRILQRLGLLDEIL 63 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS------------SSEEE----EHHHHHHHHHTTEHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccc------------ccccc----ccccccccccccchhhhh
Confidence 89999999999999999999999999999987643311 11122 356778899999876554
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=97.45 Aligned_cols=100 Identities=24% Similarity=0.398 Sum_probs=76.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
.++++.|+|+.||.|.+++.+|+. .+++|+++|++|..++..+++++.+++.+++..+++|.+++.+.+.||.|+++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 578999999999999999999984 4678999999999999999999999999999999999999876789999999653
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
-. -..++..+.+++|+||.+.
T Consensus 179 ~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS------GGGGHHHHHHHEEEEEEEE
T ss_pred HH------HHHHHHHHHHHhcCCcEEE
Confidence 22 2356777888999998864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.8e-08 Score=108.76 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcC--ceEEeCCCeeEEEeCCCcEEEEeCC-CcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWG--CQIRTSSEVCSVLPADKGCTIVCGD-GSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G--~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+++.| ++++.+++|+.|+.+++++.|++.+ |..+.||+||+|+..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 44455666666666 6888999999999999999998865 467999999999874
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=105.90 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.++..+++++|++++.+++++.|++++|++++||.||.|....
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCC
Confidence 5666777777766655589999999999999999999999899999999997643
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-08 Score=106.54 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.|.+.+.+.|++++ +++|++|+.+++++.|++++|++++||.||.|+...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 455667777777789986 679999999988899999999899999999998654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=108.31 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=48.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||++||++|..|++.|++|+|+|++..++...+. + ...++..++++++|+.....
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra--------------~--~l~~~~~~~L~~lGl~~~l~ 72 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRA--------------V--GIDDEALRVLQAIGLADEVL 72 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCce--------------e--eeCHHHHHHHHHcCChhHHH
Confidence 48999999999999999999999999999998765432111 1 12457789999999876543
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-08 Score=90.91 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhcCceEE-eCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 217 YVNKVRKQLESWGCQIR-TSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~-~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
..+.+.+.+ ..|++|. ...+|+.|...++++.|.+++|..+.||+||+|+.
T Consensus 103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 103 RFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred HHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 344444444 3355543 57799999999999999999999999999999985
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-08 Score=109.04 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPDA 272 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~~ 272 (842)
+...+++.|.+.++++|++|+++++|+++..++++| .|.. .+|+ ++.|+.||+|+.....
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456789999999999999999999999999988875 3333 3565 5789999999876543
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=101.65 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
.+.++.+++.+++.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++.
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL- 89 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc-
Confidence 356678888888889999999999999999999998 78999999999999999988754 2489999999988763
Q ss_pred CCccEEEEcchhh
Q 035870 695 NKYDRIISCEMIE 707 (842)
Q Consensus 695 ~~fD~i~s~~~~~ 707 (842)
..||.|+++..+.
T Consensus 90 ~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 PEFNKVVSNLPYQ 102 (258)
T ss_pred hhceEEEEcCCcc
Confidence 3589999987754
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=105.65 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=48.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||++||++|..|+++|++|+|+|+++..- .. -+.|+..+ .++..++++++|+.....
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~--~~--------~~~~a~~l----~~~~~~~L~~lGl~~~l~ 66 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDY--VL--------GRIRAGVL----EQGTVDLLREAGVDERMD 66 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcc--cC--------CceeEeeE----CHHHHHHHHHCCChHHHH
Confidence 489999999999999999999999999999987410 00 02233333 356789999999875543
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=96.97 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-E-EEEeCC------C---------cEEeCCEEEEc--cChHHHHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-C-TIVCGD------G---------SREFYNSCVMA--LHAPDALK 274 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~------G---------~~~~ad~VV~A--~p~~~~~~ 274 (842)
...+++-|.+++++.|++|+-+..+.++..+.++ | .|.|.| | -++.|..-|+| +......+
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskq 261 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQ 261 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHH
Confidence 3488888999999999999999999999988765 3 566542 2 36889999999 56666666
Q ss_pred hhc
Q 035870 275 ILG 277 (842)
Q Consensus 275 ll~ 277 (842)
++.
T Consensus 262 i~k 264 (621)
T KOG2415|consen 262 IIK 264 (621)
T ss_pred HHH
Confidence 654
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=104.24 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.|-+.|.+.+++.+ ++++++++|++|..+++++.|++.++ +++||.||.|-..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~ 158 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGA 158 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCC
Confidence 66777777777665 78999999999999999999998777 8999999999543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.2e-08 Score=102.84 Aligned_cols=109 Identities=25% Similarity=0.264 Sum_probs=90.5
Q ss_pred CCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----cCCCccEEEE
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
|++|||+-|=||+++.++|.. |+ +||+||+|...++.|+++++-+|++ +++.++++|+.+.- ...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 999999999999999999987 76 9999999999999999999999985 46899999977654 3459999998
Q ss_pred cchhhh-------cChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 703 CEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 703 ~~~~~~-------~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
-..-.. -....+..++..+.++|+|||.+++.+....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 643211 1123478889999999999999999766543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.3e-08 Score=93.95 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=82.4
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c---cCC-CccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A---KAN-KYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~-~fD~i~s~ 703 (842)
++.++||++||+|.+++.++.+...+|+++|.++.+++.++++++.+++.++++++++|+.+. . ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999999999999844489999999999999999999999877899999998543 2 122 47888887
Q ss_pred chhhhcChhhHHHHHHHHH--hccccCcEEEEEee
Q 035870 704 EMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFI 736 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~ 736 (842)
..+.. ......++.+. .+|+++|.+++...
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 76643 22455555443 47899999888643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=103.04 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+|+++++.+++++.. ++++++++|+.+++.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 34467788888889999999999999999999998 56999999999999999987642 48999999999887322
Q ss_pred -CccEEEEcchh
Q 035870 696 -KYDRIISCEMI 706 (842)
Q Consensus 696 -~fD~i~s~~~~ 706 (842)
.+|.|++|...
T Consensus 104 ~~~~~vv~NlPY 115 (272)
T PRK00274 104 LQPLKVVANLPY 115 (272)
T ss_pred cCcceEEEeCCc
Confidence 25999998664
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=85.22 Aligned_cols=144 Identities=19% Similarity=0.144 Sum_probs=111.9
Q ss_pred hhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEE
Q 035870 579 RHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYT 656 (842)
Q Consensus 579 ~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~ 656 (842)
.-+|.--.|++-|.+...+-..-+-++ --..+.|...++...|.-|||+|.|+|-++..+.++ ....++
T Consensus 7 ~~f~~e~~F~k~wi~~PrtVGaI~PsS---------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~ 77 (194)
T COG3963 7 RKFDEEISFFKGWIDNPRTVGAILPSS---------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLT 77 (194)
T ss_pred hhHHHHHHHHHHHhcCCceeeeecCCc---------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceE
Confidence 334444467777877654443222111 122356778888899999999999999999999988 446899
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcE
Q 035870 657 GITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
+++.|++......++.. .++++++|+.++. .+..||.|+|.-.+-.++.....++++++...|.+||.
T Consensus 78 ~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~ 151 (194)
T COG3963 78 AIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGP 151 (194)
T ss_pred EEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCe
Confidence 99999999998887753 5679999987775 46789999999888888877788999999999999999
Q ss_pred EEEEeec
Q 035870 731 LVLQFIS 737 (842)
Q Consensus 731 ~~~~~~~ 737 (842)
++--..+
T Consensus 152 lvqftYg 158 (194)
T COG3963 152 LVQFTYG 158 (194)
T ss_pred EEEEEec
Confidence 8886665
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-08 Score=94.74 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=103.1
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEccccCCc---cCCCc
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGL-QDLIRLYLCDYRQLA---KANKY 697 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l-~~~v~~~~~d~~~~~---~~~~f 697 (842)
....++.|.+|||.+.|-|..++.++++ |+ +|..++.++..++.|+-|-=+.++ +.+++++.+|+.++- ++.+|
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3445678999999999999999999998 66 999999999999998765322222 225799999976654 67899
Q ss_pred cEEEEcch-hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 698 DRIISCEM-IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 698 D~i~s~~~-~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
|+|+--.. |.+.++=+-.++.++++|+|||||+++--. ..|...|... --...+.+.+.+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv-G~Pg~ryrG~-----------------d~~~gVa~RLr~- 267 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV-GNPGKRYRGL-----------------DLPKGVAERLRR- 267 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCCCcccccC-----------------ChhHHHHHHHHh-
Confidence 99997543 444454466899999999999999987533 3343333211 113455667776
Q ss_pred CCcEEEEE
Q 035870 777 SRLCVEQV 784 (842)
Q Consensus 777 ~gf~v~~~ 784 (842)
.||++++.
T Consensus 268 vGF~~v~~ 275 (287)
T COG2521 268 VGFEVVKK 275 (287)
T ss_pred cCceeeee
Confidence 89986543
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=107.35 Aligned_cols=62 Identities=37% Similarity=0.527 Sum_probs=48.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.||+|||||++||++|+.|++.|++|+|+|+++.+....+. .. ..++..++++++|+.....
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra------------~~----l~~~~~~~l~~lGl~~~l~ 85 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRA------------IC----FAKRSLEIFDRLGCGERMV 85 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeE------------EE----EcHHHHHHHHHcCCcHHHH
Confidence 38999999999999999999999999999998755331111 11 2457789999999876543
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=104.24 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=42.7
Q ss_pred HHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 218 VNKVRKQLES-WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 218 ~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
-+.|.+.+.+ .|++++++++|++|..+++++.|++++|.++.+|.||.|....
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 3445555444 3789999999999998888899999899889999999997643
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=97.45 Aligned_cols=37 Identities=41% Similarity=0.642 Sum_probs=34.7
Q ss_pred cEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~ 38 (842)
||+|||||++||+||++|++. |++|+|+|++..+||.
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 899999999999999999986 8999999999998883
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=107.25 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cE-EEEeC-CCc--EEeC-CEEEEccChHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GC-TIVCG-DGS--REFY-NSCVMALHAPD 271 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v-~V~~~-~G~--~~~a-d~VV~A~p~~~ 271 (842)
+...+.+.|.+.+++.|++|+++++|++|..+++ ++ .|... +|+ .+.| +.||+|+....
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3567899999999999999999999999988753 43 34332 333 4788 99999987653
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-08 Score=105.25 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=55.4
Q ss_pred ceEEecCC---hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHH
Q 035870 206 QWLTVRWR---SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 206 ~~~~~~gG---~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..|.|..| ...++++|+..+++.|+.|..|++|++|....++ +.|.|.-| .+++.+||-|+..|+
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 34555555 5789999999999999999999999999887665 58999999 699999999998875
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-08 Score=111.55 Aligned_cols=62 Identities=31% Similarity=0.407 Sum_probs=47.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
.+|+|||||++||++|..|+++|++|+|+|+++...- . ..+. ...++..++++++|+.....
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~-------~-----~ra~----~l~~r~~e~L~~lGl~~~l~ 69 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF-------N-----PKAN----TTSARSMEHFRRLGIADEVR 69 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC-------C-----Cccc----cCCHHHHHHHHhcChHHHHH
Confidence 3899999999999999999999999999998763221 0 0111 13467789999999876554
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-07 Score=103.96 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+.+.|++++ +++|+.+..+ ++.+.|++.+|++++|+.||.|++...
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 566677777777788885 6689999887 556888888888899999999998764
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=106.45 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+++.|++|+.+++|++|..++++| .|. ..+|+ .+.|+.||+|+....
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4678888888888899999999999998876664 232 24564 589999999988653
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-08 Score=99.13 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCeEEEeccCch----HHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHH------------------HH--------
Q 035870 630 GQEVLEIGCGWG----TLAIEIVKRT-----GCKYTGITLSEEQLKYAEMKV------------------KE-------- 674 (842)
Q Consensus 630 ~~~vLDiGcG~G----~~~~~la~~~-----~~~v~gid~s~~~~~~a~~~~------------------~~-------- 674 (842)
.-+|+..||++| .+++.+.+.. ..+|+|+|+|+.+++.|++-+ ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 3444444431 368999999999999998741 00
Q ss_pred ----cCCCCCeEEEEccccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 675 ----AGLQDLIRLYLCDYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 675 ----~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+...|+|.+.|..+.+ +.+.||+|+|.+++.|+.++....+++.+++.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012356899999987743 358999999999999999988999999999999999999883
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.9e-08 Score=109.93 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++++++++|++|+.+++++.|.+.+| +++.+|.||+|+..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 46777888889889999999999999998888888877777 47999999999864
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=100.49 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=40.4
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+++.|+++++ ++|++|+.+++++.|++.+|+++.+|+||+|+...
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 33444555889998 89999999888888998888899999999998753
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=93.53 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=41.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCC------CeEEEEecCCCCCCCceeEeeCCeeeec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG------VEVVLYEKDDYLGGHAKTVTFDGVDLDL 51 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G------~~V~VlEa~~~~GG~~~s~~~~g~~~d~ 51 (842)
|+|+||||||.|.++||+|++++ .+|+++|+....|| +|....|+-.+.
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g--aSGkasgfLa~w 65 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG--ASGKASGFLAKW 65 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc--cccccchhhHhh
Confidence 68999999999999999999997 79999999998888 555556655443
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=103.30 Aligned_cols=38 Identities=50% Similarity=0.753 Sum_probs=36.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
|+|+|||||+|||++|.+|.+.|++|+||||.+.+||-
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl 44 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence 68999999999999999999999999999999999993
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.8e-08 Score=91.71 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=87.4
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~ 707 (842)
....++|||||-|....++..+.-.+++-+|.|..|++.++.. +..++ .+...++|-+.++ .+.++|+|++...+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 3457999999999999999887445899999999999998754 33333 4677888988888 778999999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++.+ ++..+.+++..|||+|.++-.-+.
T Consensus 149 W~Nd--LPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 149 WTND--LPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred hhcc--CchHHHHHHHhcCCCccchhHHhc
Confidence 9977 999999999999999998875443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=88.04 Aligned_cols=127 Identities=17% Similarity=0.277 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCC-CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 616 RKVSLLIEKARVSK-GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
+-++.+++.+.-.| +..|-|+|||.+.++..+.. +.+|...|+-.. +-.+..+|+.++| +
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~----------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP----------------NPRVTACDIANVPLE 119 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------------STTEEES-TTS-S--
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC----------------CCCEEEecCccCcCC
Confidence 34567777776544 57999999999999865432 468999998642 1246789999999 8
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAM 773 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~ 773 (842)
+++.|++|.+-++- +. ++..++++..|+|||||.+.|.++... +..+.+..+.+
T Consensus 120 ~~svDv~VfcLSLM--GT-n~~~fi~EA~RvLK~~G~L~IAEV~SR-----------------------f~~~~~F~~~~ 173 (219)
T PF05148_consen 120 DESVDVAVFCLSLM--GT-NWPDFIREANRVLKPGGILKIAEVKSR-----------------------FENVKQFIKAL 173 (219)
T ss_dssp TT-EEEEEEES-----SS--HHHHHHHHHHHEEEEEEEEEEEEGGG------------------------S-HHHHHHHH
T ss_pred CCceeEEEEEhhhh--CC-CcHHHHHHHHheeccCcEEEEEEeccc-----------------------CcCHHHHHHHH
Confidence 89999999876543 32 489999999999999999999876532 12456677777
Q ss_pred hhcCCcEEEEEEec
Q 035870 774 SVASRLCVEQVENI 787 (842)
Q Consensus 774 ~~~~gf~v~~~~~~ 787 (842)
.. .||++...+.-
T Consensus 174 ~~-~GF~~~~~d~~ 186 (219)
T PF05148_consen 174 KK-LGFKLKSKDES 186 (219)
T ss_dssp HC-TTEEEEEEE--
T ss_pred HH-CCCeEEecccC
Confidence 76 89998886543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.8e-07 Score=101.84 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|+++..+ .|+.+..+++++ .|.+ +|+.+.++.||+|+..+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 468899999998889999876 788888766665 4544 566899999999987654
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.4e-07 Score=103.20 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCC--CcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPAD--KGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~--~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
...++..|++.++++|++|+.+++|++|..++ +++ .|+. .+|+ ++.||.||+|+.++.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56899999999999999999999999998863 443 3333 2343 589999999999874
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-07 Score=101.34 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=47.8
Q ss_pred ecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC--CCcE-EEEeC-CCcEEeCCEEEEccChH
Q 035870 210 VRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA--DKGC-TIVCG-DGSREFYNSCVMALHAP 270 (842)
Q Consensus 210 ~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~v-~V~~~-~G~~~~ad~VV~A~p~~ 270 (842)
+.++...+++.|.+.+++.|++|+++++|++|..+ ++.+ .|.+. ++.++.|+.||+|+...
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 34566789999999999999999999999999876 3444 34443 34578999999998743
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=78.92 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
...-+||||||+|..+..+++. ++..+.++|+++.+++...+.++.++. ++..++.|...--..++.|+++-+...
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCc
Confidence 3668999999999999999988 567899999999999999998888765 578899997665534899999987532
Q ss_pred h---------------hc----ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 707 E---------------AV----GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 707 ~---------------~~----~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
. +. +.+-.+.++.++..+|.|.|.+++..+.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 1 11 2334678888999999999999997654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=100.48 Aligned_cols=60 Identities=27% Similarity=0.458 Sum_probs=45.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
.||+|||||++||++|+.|+++|++|+|+|+++...- +..+.. ..+...++++++|+...
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~------------~~r~~~----l~~~s~~~L~~lG~~~~ 66 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR------------DFRGDT----VHPSTLELMDELGLLER 66 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc------------cccCce----eChhHHHHHHHcCChhH
Confidence 4899999999999999999999999999999753210 000111 23467789999998644
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.8e-07 Score=105.87 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
.+.|.+.+++.|++|++++.|+++..++++| .|.. .+|+ .+.|+.||+||....
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 3667777777899999999999998876664 3433 2454 578999999998654
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=102.17 Aligned_cols=49 Identities=47% Similarity=0.767 Sum_probs=40.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCe-EEEEecCCCCCCCceeEeeCCeee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVTFDGVDL 49 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~-V~VlEa~~~~GG~~~s~~~~g~~~ 49 (842)
.||+|||||+|||++|++|+++|.+ ++||||++.+||.-+..+..+.+.
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~ 58 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRL 58 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEE
Confidence 4899999999999999999999998 999999999999544333333333
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.6e-07 Score=102.43 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|..+++++.|++.+|+++.+|.||+|+..
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 270 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC
Confidence 4677888889999999999999999999877778888888888999999999764
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=100.06 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=44.7
Q ss_pred cCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe-CCCc--EEeC-CEEEEccChH
Q 035870 211 RWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC-GDGS--REFY-NSCVMALHAP 270 (842)
Q Consensus 211 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~-~~G~--~~~a-d~VV~A~p~~ 270 (842)
.+| ..|+..|.+.+++.|++|+++++|+++..++++| .|.. .+|+ .+.+ +.||+|+...
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 445 8899999999999999999999999998765554 3322 3443 3556 5899998765
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-07 Score=106.83 Aligned_cols=53 Identities=19% Similarity=0.077 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.|.+.|++.+.. ..++++++|++|+.++++|.|++.+|+++.+|.||.|-..+
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~ 247 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIW 247 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCC
Confidence 566777776632 24788999999999999999999999899999999996543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-07 Score=94.01 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...+.+++.+...++++|||||||+|.++..++++ +.+|+++|+++.+++.++++... .++++++++|+.+.+..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 45567888888889999999999999999999998 56899999999999999988743 24899999999888732
Q ss_pred Ccc---EEEEcchh
Q 035870 696 KYD---RIISCEMI 706 (842)
Q Consensus 696 ~fD---~i~s~~~~ 706 (842)
+|| .|+++-.+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 566 88887653
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=104.86 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhcC---ceEEeCCCeeEEEeC-------CCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWG---CQIRTSSEVCSVLPA-------DKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G---~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+-+.|.+.+.+.+ ++++++++|++|+.+ ++++.|++.+|++++||.||.|-..
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~ 181 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGS 181 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCC
Confidence 45556666666654 899999999999753 4568999999999999999999543
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG4716 Myosin-crossreactive antigen [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-07 Score=93.42 Aligned_cols=210 Identities=18% Similarity=0.216 Sum_probs=119.6
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCeEEEEecCCCCCCCceeEee--CCeeeecceEeecCCCchhHHHHHHHcC--
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA----GVEVVLYEKDDYLGGHAKTVTF--DGVDLDLGFMVFNRVTYPNMMEFFESLG-- 72 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~----G~~V~VlEa~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~l~~~lG-- 72 (842)
|.+-|||+|+|||++|.+|.+. |.++.++|--+..||....... .|+.+.-|-..- ..+..+++|++.+-
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemE--nhfEc~WDlfrsIPSL 100 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREME--NHFECLWDLFRSIPSL 100 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHH--HHHHHHHHHHhcCccc
Confidence 5688999999999999999886 5699999999999997654332 566665544332 24566777777542
Q ss_pred -CCcc-------------cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcC
Q 035870 73 -VDME-------------MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELES 138 (842)
Q Consensus 73 -l~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (842)
++.. +....+.+...+|+++.-.+...+.. ....++.++ ...
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~g~rv~ddg~~tl~~--------------~~~~ei~kL----------~~t 156 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKRGRRVDDDGSFTLNN--------------KARKEIIKL----------LMT 156 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeeccccccccccccccCh--------------hhHHHHHHH----------HcC
Confidence 2111 11122233333444333322222211 111122211 111
Q ss_pred CCCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh--ccccccCCCCc-eEEecCChh
Q 035870 139 NPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN--HHLLQLFGRPQ-WLTVRWRSH 215 (842)
Q Consensus 139 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~gG~~ 215 (842)
.....++.++.+|+....+...|.-.+-..+.-.-|. |+..+.+|+.+ +++.++..-.. -++.-.-+.
T Consensus 157 ~EE~L~~~tI~d~Fse~FF~sNFW~yW~tmFAFekWh---------Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYe 227 (587)
T COG4716 157 PEEKLDDLTIEDWFSEDFFKSNFWYYWQTMFAFEKWH---------SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYE 227 (587)
T ss_pred cHHhcCCccHHHhhhHhhhhhhHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHhcCCCcchhhcccccchHH
Confidence 1222378999999998877665543322222212232 44444444332 11111111111 122234577
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPAD 245 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~ 245 (842)
+++..|...|+++|+++.+++.|+.|+.+.
T Consensus 228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred HHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 999999999999999999999999998764
|
|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-06 Score=93.63 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQ 292 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~ 292 (842)
...++..|++.+.++|++++.+++|++|..++++| .|.+.+| ++.||.||+|+.++... +.+. + +. +
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~-l~~~-~-------~~--~ 203 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE-LLPL-P-------LR--P 203 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh-cccC-C-------cc--c
Confidence 57899999999999999999999999999988876 5777777 79999999999987543 3321 0 00 0
Q ss_pred eeeceEEEecCCC---CcCCCCCCcceeeecc-cCCCceEEEEEcc--ccc-CCCCC----CCCeEEecCCCCCCcceeE
Q 035870 293 YVYSDIFLHRDKR---FMPQNPAAWSAWNFLE-SFDSKVCLTYWLN--VLQ-NLGET----SLPFLVTLNPDHVPEHTLL 361 (842)
Q Consensus 293 ~~~~~v~l~~~~~---~~p~~~~~~~~~~~~~-~~~~~~~v~~~~~--~l~-~l~~~----~~~~~~~l~~~~~~~~~~~ 361 (842)
.....+.+..... -.|.....+....|.. .+++...+..... ... ..... +.+.+..+.|......+..
T Consensus 204 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~ 283 (337)
T TIGR02352 204 VRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLE 283 (337)
T ss_pred cCceEEEeeccccccCCcccceEEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCcHHH
Confidence 0001111111100 0010000011111211 1233333322111 000 00000 0111112223222223444
Q ss_pred EEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCC
Q 035870 362 KWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 362 ~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.|...+|. +.+..+.+...+..+|+|++.++.|.|+ ..+...|+.+|+.|++.
T Consensus 284 ~~~g~r~~----t~D~~piig~~~~~~~~~~~~g~~g~G~-~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 284 TWAGLRPG----TPDNLPYIGEHPEDRRLLIATGHYRNGI-LLAPATAEVIADLILGK 336 (337)
T ss_pred heecCCCC----CCCCCCEeCccCCCCCEEEEcccccCce-ehhhHHHHHHHHHHhcC
Confidence 56554442 2234444444445689999999999999 89999999999999874
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-07 Score=102.00 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-c---EEEE-----eCCC-cEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-G---CTIV-----CGDG-SREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~---v~V~-----~~~G-~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+.++.|++|..+++ + +.+. ..++ ..+.|+.||+|+....
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46888999999888999999999999988754 3 3333 2233 3689999999987643
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-07 Score=101.45 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+.++++ +.|++.+|+++.||.||+|+..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 467788888899999999999999999987665 7888888988999999999753
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-07 Score=100.72 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=93.4
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEE
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
++++|++|||++||.|+-+.++|+.. ...|+++|+++.-++..++++++.|+. +|.+.+.|...+. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 67899999999999999999999873 358999999999999999999999986 7999999988764 346899999
Q ss_pred E----c--chhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 702 S----C--EMIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 702 s----~--~~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
. + +|+..-++ +...+++..+.++|||||+++.++++...
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 4 2 23332221 12367899999999999999999888654
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-07 Score=103.42 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|+++++++.|++|..+++++.|++.+|+++.+|.||+|++.
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 4566777888888899999999999999877778888888888999999999864
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-07 Score=101.86 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+.+.|+++ ++++|++|..+++++. +++.+|.++.|+.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 56667777777779998 7889999998888765 4567888899999999988765
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-07 Score=105.67 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCCc-EEeCC-EEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDGS-REFYN-SCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G~-~~~ad-~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++|+++++|++|..++++| .|.. .+++ .+.++ .||+|+...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 5788899999999999999999999999887754 3433 3443 46775 799998755
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=89.46 Aligned_cols=122 Identities=18% Similarity=0.337 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCC-CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 618 VSLLIEKARVSK-GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 618 ~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
++.+++.+...| ...|-|+|||-+.++. .. -.+|+.+|+-+ + +-+++.+|++++| +++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-----~-----------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-----V-----------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec-----C-----------CCceeeccccCCcCccC
Confidence 566777766544 4578999999998875 22 35799999853 1 3467899999999 889
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
+.|++|.+.++ ++. ++..++.+++|+|||||.++|..+.. .+++...+..++..
T Consensus 228 svDvaV~CLSL--Mgt-n~~df~kEa~RiLk~gG~l~IAEv~S-----------------------Rf~dv~~f~r~l~~ 281 (325)
T KOG3045|consen 228 SVDVAVFCLSL--MGT-NLADFIKEANRILKPGGLLYIAEVKS-----------------------RFSDVKGFVRALTK 281 (325)
T ss_pred cccEEEeeHhh--hcc-cHHHHHHHHHHHhccCceEEEEehhh-----------------------hcccHHHHHHHHHH
Confidence 99999986544 442 48999999999999999999977643 22456667778887
Q ss_pred cCCcEEEEEEe
Q 035870 776 ASRLCVEQVEN 786 (842)
Q Consensus 776 ~~gf~v~~~~~ 786 (842)
.||++.+...
T Consensus 282 -lGF~~~~~d~ 291 (325)
T KOG3045|consen 282 -LGFDVKHKDV 291 (325)
T ss_pred -cCCeeeehhh
Confidence 8999877554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-07 Score=99.30 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-CCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-ANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~fD~i~s~~~~ 706 (842)
++.+|||++||+|.+++.++.+.+ .+|+++|+++++++.++++++.+++. ++++.++|+..+.. .++||+|+....
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~- 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF- 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-
Confidence 357999999999999999988744 48999999999999999999999986 67899999877543 467999999753
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+. ...++....+.+++||.++++
T Consensus 135 ---Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 33 457777767778999999997
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=93.66 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=81.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc----cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA----KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~----~~~~fD~i~ 701 (842)
..+.+|||+-|=+|+++.+++.. |+ +|+.||.|..+++.++++++.+|++ ++++++..|+.+.- ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 35889999999999999998876 54 8999999999999999999999986 68999999976532 357999999
Q ss_pred EcchhhhcC----hhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 702 SCEMIEAVG----HEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 702 s~~~~~~~~----~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+-..-..=+ ...+..++..+.++|+|||.+++.+.+
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 864311100 134778899999999999999876654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.3e-07 Score=104.30 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+.+++.|++++++++|++|..+++.+.|++.+|+++.||.||+|+...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 334455555566899999999999998877788888888889999999999864
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-07 Score=85.32 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=86.2
Q ss_pred HHHHHHHHcC--CCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCCeE
Q 035870 617 KVSLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAG--------L-QDLIR 682 (842)
Q Consensus 617 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~--------l-~~~v~ 682 (842)
....+++.|. ++||.+.||+|+|+|.++..++.. .|..++|||.-++.++++++++...- + ..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3345666666 789999999999999999888866 34456999999999999999987543 1 23678
Q ss_pred EEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 683 LYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 683 ~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++.+|.+... +..+||.|.+-.. -...-+++-..|+|||++++-..
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEeec
Confidence 9999998877 6689999987532 23444556667999999998443
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=95.68 Aligned_cols=61 Identities=28% Similarity=0.385 Sum_probs=44.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
.||+|||||+|||++|+.|+++ ++|+|+|+++..+-. |.....|. ...++..+.++++|+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~-------~~~~~~g~-----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTE-------GFSKPCGG-----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccc-------cccCcCcC-----ccCHHHHHHHHHcCCC
Confidence 4899999999999999999999 999999998764310 00000111 1346788899999985
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.9e-07 Score=103.91 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EE---EeCCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TI---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
-..+.+.|.+.+++.|++|+.++.|+++..++++| .| ...+|+ .+.|+.||+|+....
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 35788899998888899999999999998766654 22 334564 589999999987653
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=96.87 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=82.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
+...+||.||+|.|..+..+.+.. ..+|+.+|+++++++.|++.+...+ + .++++++.+|.++.- ..++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 345799999999999999998863 4689999999999999999875432 2 358999999987754 447899999
Q ss_pred Ecchhhhc----Ch-hhHHHHHH-HHHhccccCcEEEEEee
Q 035870 702 SCEMIEAV----GH-EFMEEFFG-CCESLLAEDGLLVLQFI 736 (842)
Q Consensus 702 s~~~~~~~----~~-~~~~~~~~-~~~~~LkpgG~~~~~~~ 736 (842)
+-.. ... +. =+-.++++ .+++.|+|||.++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8621 110 00 01357887 89999999999988643
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=97.55 Aligned_cols=58 Identities=17% Similarity=0.045 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC---Cc--EEeCCEEEEccChHHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD---GS--REFYNSCVMALHAPDA 272 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~A~p~~~~ 272 (842)
.+|+-..+..+.++|++|...++|+++.++++-+.|...| |+ ++.|+.||.|+.+|.-
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 4788888888888999999999999999999844566554 33 5899999999998854
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=102.95 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=33.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 899999999999999999999999999999876555
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-07 Score=89.53 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=83.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
-+|.++||+-||+|.+++.+..+...+|+.||.|+..++..+++++..++.++++++..|+...- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 37889999999999999999998556999999999999999999999999878999999954322 3589999999
Q ss_pred cchhhhcChhhHHHHHHHHH--hccccCcEEEEEeecC
Q 035870 703 CEMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFISI 738 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~~~ 738 (842)
......-.. ....+..+. .+|+++|.+++.....
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 877664321 367777776 8999999999976443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=98.28 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh--HHHHHhh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA--PDALKIL 276 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~--~~~~~ll 276 (842)
.+-+.|.+.+++.|++++.+++|++|+.++++|.|+..+| ++++||.||-|-.. ..+.+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 5677788888888999999999999999999999888754 58999999999552 3344443
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-06 Score=99.20 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE---EEEeCCCc-EEeC-CEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC---TIVCGDGS-REFY-NSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~~~G~-~~~a-d~VV~A~p~~~ 271 (842)
..++..|.+.+++.|++|+++++|++|..++++| .+.+.++. ++.| +.||+|+..+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5688999999999999999999999998876654 33334443 4788 99999987663
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.9e-07 Score=103.47 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE---EEEe-CCCc--EEeCCEEEEccChHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC---TIVC-GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v---~V~~-~~G~--~~~ad~VV~A~p~~~ 271 (842)
....+...|.+.+.+.|++|+.+++|++|..+++++ .+.. .+|+ .+.|+.||+||....
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345677888888888899999999999999877653 3433 4665 467999999998654
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=98.01 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcE-EEE-eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGC-TIV-CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V~-~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++ .|++|+++++|++|..+++++ .|. +.+|+ ++.|+.||+|+...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4688888888765 489999999999998776654 322 33444 58999999999763
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=79.22 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=74.8
Q ss_pred HHHHHcCCCCCCeEEEeccCchH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGT-LAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~-~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~ 696 (842)
.+.+.+....+.++||||||.|. ++..+++. |.+|+++|+|+..++.++++ .++++..|..+.. .-+.
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhc
Confidence 45555555567899999999996 88888876 89999999999988888766 3689999988776 3478
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+|+|.|+..-. ++...+.++.+. -|.-+++...+.
T Consensus 78 a~liysirpp~-----el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIRPPR-----DLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeCCCH-----HHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 99999975421 234444444443 355677755543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=89.40 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhc
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV 709 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~ 709 (842)
-...+|+|.|.|..+..+..+ -.+|-+++.....+-.+...+. . .|+.+-+|..+-.| +-|+|+..++++|.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP--KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----CcceecccccccCC--CcCeEEEEeecccC
Confidence 378999999999999999986 3468999998888877777664 3 37888888544332 44799999999999
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEeecCCC-ccccc----ccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEE
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQFISIPD-ERYNE----YRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~-~~~~~----~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
+|++...+|++++..|+|||.+++.+...+. ..... .....+.....+.++|.--+..+....+.+ +||.+..+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~-~gF~~~~~ 328 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPE-EGFPVCMV 328 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchh-hcCceeEE
Confidence 9999999999999999999999998876664 22221 122333444455577777788888777666 89998887
Q ss_pred EecCccHHH
Q 035870 785 ENIGIHYYQ 793 (842)
Q Consensus 785 ~~~~~~y~~ 793 (842)
.....+|..
T Consensus 329 ~~~~~~~~~ 337 (342)
T KOG3178|consen 329 ALTAYSYSV 337 (342)
T ss_pred EeccCccch
Confidence 776666543
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=99.19 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+.+++++.|.+.+| +++.+|.||+|+..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 46777888888889999999999999998777787877666 67999999999864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-07 Score=101.76 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=88.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~ 703 (842)
..+..+||||||.|.+...+|+. +...++|+|++..-+..+.+++...++. |+.++..|+..+. +++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 34668999999999999999988 8899999999999999999999888886 8999988876544 56889999998
Q ss_pred chhhhcChh------hHHHHHHHHHhccccCcEEEEE
Q 035870 704 EMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 704 ~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.=-|.... --+.+++.++++|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 765443221 1378999999999999999984
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-07 Score=90.62 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
+.++.+++.+++.+++.|||||+|.|.++..++++ +.+|+++++++.+++..+++... .++++++++|+...+...
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchh
Confidence 45678999999999999999999999999999998 88999999999999999998752 348999999998887333
Q ss_pred --CccEEEEcch
Q 035870 696 --KYDRIISCEM 705 (842)
Q Consensus 696 --~fD~i~s~~~ 705 (842)
.++.|++|-.
T Consensus 93 l~~~~~vVaNlP 104 (259)
T COG0030 93 LAQPYKVVANLP 104 (259)
T ss_pred hcCCCEEEEcCC
Confidence 7899999854
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=89.84 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCch----HHHHHHHHhc------CCEEEEEcCCHHHHHHHHHHH-----
Q 035870 608 EDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWG----TLAIEIVKRT------GCKYTGITLSEEQLKYAEMKV----- 672 (842)
Q Consensus 608 ~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G----~~~~~la~~~------~~~v~gid~s~~~~~~a~~~~----- 672 (842)
..++.-....+..++..... ..-+|+-+||++| .+++.+.+.. ..+|+|+|+|...++.|+.-+
T Consensus 76 ~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~ 154 (268)
T COG1352 76 EHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE 154 (268)
T ss_pred HHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH
Confidence 34555444444444443322 4679999999999 4555555553 479999999999999998621
Q ss_pred HHcCCC-----------------------CCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 673 KEAGLQ-----------------------DLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 673 ~~~~l~-----------------------~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
...+++ ..|.|...|..+-+ ..+.||+|+|-.++-++..+...++++.++..|+||
T Consensus 155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 112222 35777777766555 567899999999999999988999999999999999
Q ss_pred cEEEE
Q 035870 729 GLLVL 733 (842)
Q Consensus 729 G~~~~ 733 (842)
|++++
T Consensus 235 G~Lfl 239 (268)
T COG1352 235 GLLFL 239 (268)
T ss_pred CEEEE
Confidence 99999
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=100.31 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..++..|.+.+.+.|++|+.++.++++..++++| .|.. .+|+ .+.|+.||+||....
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688889888887899999999999999876664 3433 2343 578999999998654
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.1e-07 Score=101.78 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+.+++.|++++++++|++|...++.+.|.+.+|+++.||.||+|+...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 344455556666899999999999999888888988888889999999999863
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-06 Score=97.38 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcEE-EEeCC-C--cEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGCT-IVCGD-G--SREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v~-V~~~~-G--~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++ .|++|+.++.|++|..+++++. |.+.+ + ..+.|+.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688889888887 5899999999999988766543 44332 3 3689999999988654
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-06 Score=97.65 Aligned_cols=38 Identities=50% Similarity=0.824 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC--CCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD--YLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~--~~GG~~ 39 (842)
||+|||+|.|||+||..++++|.+|+||||.+ ..||.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 89999999999999999999999999999999 788854
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-07 Score=90.77 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=93.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC-------------C--------------CC
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL-------------Q--------------DL 680 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l-------------~--------------~~ 680 (842)
..|.++||||||.-..-...|...-.+++..|.++...+..++-++..+- + ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35789999999985553333333345899999999998877765544221 0 12
Q ss_pred e-EEEEccccCCc---c----CCCccEEEEcchhhhcCh--hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCcc
Q 035870 681 I-RLYLCDYRQLA---K----ANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSS 750 (842)
Q Consensus 681 v-~~~~~d~~~~~---~----~~~fD~i~s~~~~~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 750 (842)
| .++.+|+.+.+ + .++||+|+|..++|.+.. +.+...++++.++|||||.|++....... .|..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-~Y~v----- 208 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-YYMV----- 208 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-EEEE-----
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-eEEE-----
Confidence 4 47788987655 2 135999999999998853 35788899999999999999997664322 2211
Q ss_pred chhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 751 DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
-..-||. ...+.+.+.+++++ +||.+++.+
T Consensus 209 ---G~~~F~~-l~l~ee~v~~al~~-aG~~i~~~~ 238 (256)
T PF01234_consen 209 ---GGHKFPC-LPLNEEFVREALEE-AGFDIEDLE 238 (256)
T ss_dssp ---TTEEEE----B-HHHHHHHHHH-TTEEEEEEE
T ss_pred ---CCEeccc-ccCCHHHHHHHHHH-cCCEEEecc
Confidence 1122332 12366777788887 899999887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-06 Score=97.65 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEe-CCCcE-EEE---eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLP-ADKGC-TIV---CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~-~~~~v-~V~---~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+...|.+.+++.|++|+.++.|+++.. ++++| .|. ..+|+ .+.|+.||+||...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 47888999988888999999999999887 45544 332 24564 57899999999764
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=94.14 Aligned_cols=109 Identities=11% Similarity=0.201 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc---
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK--- 693 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--- 693 (842)
.++.+++.+...+ .+|||++||+|.+++.+++. ..+|+|+|+|+++++.|+++++.+++. +++++.+|+.++..
T Consensus 186 l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~ 262 (353)
T TIGR02143 186 MLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMN 262 (353)
T ss_pred HHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHh
Confidence 3345555554333 47999999999999999987 469999999999999999999999986 79999999876431
Q ss_pred --------C------CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 694 --------A------NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 --------~------~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. ..||+|+.... . -+- .+.+++.+.+ |++.++++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~--~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPP-R-AGL--DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred hccccccccccccccCCCCEEEECCC-C-CCC--cHHHHHHHHc---CCcEEEEEc
Confidence 0 13899998766 1 221 3455555544 788888743
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-06 Score=98.75 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-E-EEE--e-CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-C-TIV--C-GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v-~V~--~-~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+++.|++|++++.|+++..++++ | .|. . .+|+ .+.|+.||+||....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 468888888888889999999999999887664 4 332 2 4564 589999999987653
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=95.21 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+.+.+.+. .++.+++++.|++|+.+++.+.|++++|++++|+.||-|.+..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 45555666666 4667889999999999999899999999999999999998743
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=95.70 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCC-cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDG-SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|+++++++.|++|..++++ +.|++.+| +++.+|.||++++.
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~ 263 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence 457778888888899999999999999876554 67777777 57999999999863
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-06 Score=99.26 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=32.3
Q ss_pred EEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 3 V~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
|+|||||+|||+||..+++.|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999885654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-06 Score=97.67 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCC--CcE-EEEe-CCCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPAD--KGC-TIVC-GDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~--~~v-~V~~-~~G~--~~~ad~VV~A~p~~ 270 (842)
-..+++.|.+.+.++ |++|++++.|+++..++ ++| .|.. .+|+ .+.|+.||+||...
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 356888898888654 89999999999998764 333 3322 3554 37899999999864
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-06 Score=94.62 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+.+++++.+++ +|+++.+|.||+|+..
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~ 251 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC
Confidence 35666677778888999999999999988776676665 4668999999999753
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.6e-06 Score=95.21 Aligned_cols=39 Identities=36% Similarity=0.559 Sum_probs=36.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||+|++||+||+.|++.|.+|+|+|+...+||.+.
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 799999999999999999999999999999999999653
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-06 Score=97.30 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
-..+...|.+.+.+.|++|++++.|+++..+ +++| .|. ..+|+ .+.|+.||+||....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3568889998888889999999999999885 4444 333 23564 478999999997654
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=5e-06 Score=97.05 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcE-EE---EeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGC-TI---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.++++| ++|+.+++|++|..++++| .| .+.+|+ .+.|+.||+|+....
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357777877777766 9999999999998766654 23 234554 589999999998764
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-06 Score=96.14 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe-CCCc--EEeCC-EEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC-GDGS--REFYN-SCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~-~~G~--~~~ad-~VV~A~p~~ 270 (842)
..++..|.+.+++.|++|+++++|++|..++++| .|.. .+|+ ++.|+ .||+|+...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~ 268 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGF 268 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence 5688899999999999999999999999877664 3333 2454 46785 799998754
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-06 Score=98.27 Aligned_cols=57 Identities=7% Similarity=-0.047 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcE-EE---EeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGC-TI---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+++.|.+.+.+ .|++|+.++.|+++..+++++ .| ...+|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4578888887765 589999999999998776654 22 234664 579999999998653
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=92.28 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=92.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC-CCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA-NKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~fD~i~s~~~~ 706 (842)
.+|.+|||.-||-|.+++.+|+....+|+++|++|..+++.+++++.|++.+.+..+++|.++..+. +.+|.|+++..-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4699999999999999999999833349999999999999999999999998899999999999844 889999987542
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
. -..++....+.+|+||.+..+.+...+.
T Consensus 267 ~------a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 S------AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred c------chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 1 3566777788888899999988776554
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=93.13 Aligned_cols=108 Identities=12% Similarity=0.256 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
.++.+.+.+... +.+|||++||+|.+++.+++. ..+|+++|+|+.+++.|++++..+++. +++++.+|+.+..
T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMN 271 (362)
T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHh
Confidence 334444444432 357999999999999999887 569999999999999999999999986 8999999986632
Q ss_pred c-------------CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 K-------------ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ~-------------~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
. ..+||+|+....-. +- .+..++.+.+ |++.++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~--~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPRA--GL--DDETLKLVQA---YERILYIS 319 (362)
T ss_pred hcccccccccccccCCCCCEEEECCCCC--CC--cHHHHHHHHc---cCCEEEEE
Confidence 0 12589999977632 21 3455555544 67777774
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.2e-06 Score=95.84 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeC-CCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCG-DGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~~~ad~VV~A~p~~ 270 (842)
...+++.|.+.+++. |++|+.+++|++|..++++| .|... +++ .+.|+.||+|+...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 356888998888765 89999999999998766654 33332 232 58999999998764
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=86.47 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCC-CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCe-EEEEccccCCc-
Q 035870 616 RKVSLLIEKARV-SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLI-RLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v-~~~~~d~~~~~- 692 (842)
.++..+++..++ .++.+|||+|||+|.++..+++....+|+++|+|++|+... +.+. .++ .+...|++.+.
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCCH
Confidence 466677777765 47889999999999999999998445899999999888761 1111 133 24444555433
Q ss_pred -----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 693 -----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 693 -----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
.-..||+++++. ...+..+.++|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE
Confidence 113567666542 3357789999999 77665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=96.01 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|..+++++.|.+.+| ++.+|.||+|+..
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC
Confidence 46778888899999999999999999998777788877666 5899999999753
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-06 Score=97.48 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||++||+||+.++++|.+|+||||....||.
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 8999999999999999999999999999999988883
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-06 Score=95.18 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+-+-|.+.+.++|++++.++ |+.+..++++ ..|++.+|++++||.||=|+...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 666777888888899998884 8888887766 37999999999999999998764
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-06 Score=95.99 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+++.|.+.+.+.|++|+.++.++++..+ +++| .|.. .+|+ .+.|+.||+|+....
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 468888988888889999999999998876 4544 3332 3564 578999999998654
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.7e-06 Score=82.48 Aligned_cols=142 Identities=21% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----------------------------------
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKE---------------------------------- 674 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~---------------------------------- 674 (842)
...+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4579999999999999999998 89999999999996544432221
Q ss_pred -----cCCCCCeEEEEccccCCc-c---CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc
Q 035870 675 -----AGLQDLIRLYLCDYRQLA-K---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE 745 (842)
Q Consensus 675 -----~~l~~~v~~~~~d~~~~~-~---~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~ 745 (842)
.....++....+|+.+.. + .++||+|++++.+....+ ..+|++.|.++|||||..+-.. .-.|..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N--i~~Yi~tI~~lLkpgG~WIN~G----PLlyh~ 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN--IIEYIETIEHLLKPGGYWINFG----PLLYHF 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH--HHHHHHHHHHHhccCCEEEecC----CccccC
Confidence 000135677777877765 3 379999999988887644 9999999999999999666421 111111
Q ss_pred ccCccchhhhcccCC--CCCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 746 YRLSSDFIKEYIFPG--GCLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 746 ~~~~~~~~~~~i~p~--~~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
... . .|+ ..-.+.+|+...+.+ .||+++..+.
T Consensus 209 ~~~-------~-~~~~~sveLs~eEi~~l~~~-~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPM-------S-IPNEMSVELSLEEIKELIEK-LGFEIEKEES 242 (270)
T ss_pred CCC-------C-CCCCcccCCCHHHHHHHHHH-CCCEEEEEEE
Confidence 000 0 011 123588999888776 8999987666
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=94.27 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 217 YVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 217 l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+.+.+.+++. +.+| ...+|+.|..++++| .|.+.+|+.+.+|.||+|+..
T Consensus 97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 444455555553 5677 467999999988885 799999999999999999987
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=88.03 Aligned_cols=114 Identities=27% Similarity=0.332 Sum_probs=87.7
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--c
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--K 693 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~ 693 (842)
++.-..+..| .+||-||.|.|+.+..+.++. -.+++.+||+++.++.+++.+.... . .+|++++..|..+.- .
T Consensus 68 h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 68 HVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 3333334445 699999999999999999983 4699999999999999999876543 2 368999999976665 2
Q ss_pred CCCccEEEEcchhhhcCh-h--hHHHHHHHHHhccccCcEEEEEe
Q 035870 694 ANKYDRIISCEMIEAVGH-E--FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~-~--~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..+||+|++...=. ++. + .-.++++.+++.|+|+|.++.+.
T Consensus 147 ~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 147 EEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 34899999854322 221 0 12789999999999999999983
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-07 Score=91.71 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
++.+++.+.+.++..+||.+||.|+.+..+++.. .++|+|+|.++++++.|++++.. .++++++++|+.++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 4578888888999999999999999999999984 47999999999999999998865 358999999999876
Q ss_pred cCC--CccEEEEcc
Q 035870 693 KAN--KYDRIISCE 704 (842)
Q Consensus 693 ~~~--~fD~i~s~~ 704 (842)
+.+ ++|.|+...
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 222 799999864
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=85.76 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
.++.|+++..+++++.|||||.|||.++..+.+. +.+|+++++++.|+...+++.+....+.+.+++++|+...+. ..
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~ 123 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PR 123 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cc
Confidence 3467889999999999999999999999999998 999999999999999999999876666899999999887762 37
Q ss_pred ccEEEEcc
Q 035870 697 YDRIISCE 704 (842)
Q Consensus 697 fD~i~s~~ 704 (842)
||.+|++-
T Consensus 124 fd~cVsNl 131 (315)
T KOG0820|consen 124 FDGCVSNL 131 (315)
T ss_pred cceeeccC
Confidence 99999964
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=94.74 Aligned_cols=61 Identities=30% Similarity=0.419 Sum_probs=45.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++|+++|+.|+++|++|+|+|+......+. .| .. ..++-.+.++++|+....
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-----------~g-~~----L~p~g~~~L~~LGl~d~l 104 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-----------MG-EF----MQPGGRFMLSKLGLEDCL 104 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-----------cc-cc----cCchHHHHHHHcCCcchh
Confidence 389999999999999999999999999999975321111 01 11 234567788999987554
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-06 Score=81.51 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=81.6
Q ss_pred eEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcC
Q 035870 632 EVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVG 710 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~ 710 (842)
+++|||+|-|--++.+|-. +..+++.+|.+..-+...+.-+...+++ |+++++..+++.....+||.|+|..+ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv----~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAV----A 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehh----c
Confidence 8999999999888887765 7889999999999999999999999997 89999999999335589999999754 3
Q ss_pred hhhHHHHHHHHHhccccCcEEEEE
Q 035870 711 HEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 711 ~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+ +..++.-+..+|++||++++.
T Consensus 126 ~--l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 P--LDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp S--HHHHHHHHGGGEEEEEEEEEE
T ss_pred C--HHHHHHHHHHhcCCCCEEEEE
Confidence 3 788999999999999998883
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=91.49 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (842)
+||||||||+||++|..|+++|++|+|||++..+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 7999999999999999999999999999997654
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-06 Score=95.56 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+++.|++|.+++.|+++..++ ++| .|. ..+|+ .+.|+.||+||....
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688899998888899999999999998875 444 333 34665 578999999997654
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-06 Score=94.16 Aligned_cols=37 Identities=41% Similarity=0.707 Sum_probs=34.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+||||| +||+||+++++.|.+|+|||+....||.+
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 89999999 99999999999999999999998888843
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-06 Score=87.06 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=99.7
Q ss_pred hhc-CChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-----CC
Q 035870 580 HYD-LSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-----GC 653 (842)
Q Consensus 580 ~Yd-~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-----~~ 653 (842)
.|| .+.+.|+..- ..+.||....+ .+.-.+....|.+.+ .++..|+|+|||.|.-+..+.+.. ..
T Consensus 35 ~YD~~Gs~LFe~It-----~lpEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 35 LYDDEGLKLFEEIT-----YSPEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred hhcchHHHHHHHHH-----cCCccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 344 3455555433 23455544322 122223344555554 467799999999998877665541 46
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEE--EEccccCC----cc---CCCccEEEEcc-hhhhcChhhHHHHHHHHHh
Q 035870 654 KYTGITLSEEQLKYAEMKVKEAGLQDLIRL--YLCDYRQL----AK---ANKYDRIISCE-MIEAVGHEFMEEFFGCCES 723 (842)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~--~~~d~~~~----~~---~~~fD~i~s~~-~~~~~~~~~~~~~~~~~~~ 723 (842)
+++++|+|.++++.+.+++.....+ .+++ +++||.+. +. .....+++..+ +|..+..+....+++++++
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999844443 4544 89998653 21 23467777665 8888888888899999999
Q ss_pred -ccccCcEEEEE
Q 035870 724 -LLAEDGLLVLQ 734 (842)
Q Consensus 724 -~LkpgG~~~~~ 734 (842)
.|+|||.+++.
T Consensus 185 ~~l~~~d~lLiG 196 (319)
T TIGR03439 185 TALSPSDSFLIG 196 (319)
T ss_pred hhCCCCCEEEEe
Confidence 99999999984
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-06 Score=78.60 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=90.4
Q ss_pred HHHHHHcCC--CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 619 SLLIEKARV--SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 619 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
+.+...+.. -.|.++||+-+|+|.+++.++.+...+++.||.|...+...+++++..++..+++++..|.....
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC
Confidence 344455543 47899999999999999999999667999999999999999999999998889999999977442
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHH--HHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGC--CESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~--~~~~LkpgG~~~~~~~ 736 (842)
..++||+|+.-..++. +--.....+.. -..+|+|+|.+++..-
T Consensus 111 ~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 111 TREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2235999999888772 11001222333 4588999999999654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.1e-06 Score=87.57 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=94.8
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-----------------------------------------EEE
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-----------------------------------------KYT 656 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-----------------------------------------~v~ 656 (842)
...|+...+.+++..++|-=||+|.+++.+|.. +. .++
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 346677778888999999999999999999976 21 377
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC-CCccEEEEcchh-hhcChh-----hHHHHHHHHHhccccCc
Q 035870 657 GITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA-NKYDRIISCEMI-EAVGHE-----FMEEFFGCCESLLAEDG 729 (842)
Q Consensus 657 gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~fD~i~s~~~~-~~~~~~-----~~~~~~~~~~~~LkpgG 729 (842)
|+|+++.+++.|+.|++++|+.+.|+|.++|+.++.+. +.+|+||||... +-++++ -+..+.+.+++.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999844 899999999653 222222 35666777778888777
Q ss_pred EEEEE
Q 035870 730 LLVLQ 734 (842)
Q Consensus 730 ~~~~~ 734 (842)
++++.
T Consensus 339 ~~v~t 343 (381)
T COG0116 339 RYVFT 343 (381)
T ss_pred eEEEE
Confidence 88774
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.6e-06 Score=95.27 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||+|++||+||+.++++|.+|+|||+...+||.+
T Consensus 9 DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 9 DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 89999999999999999999999999999999888843
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7e-07 Score=78.73 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=67.6
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEc
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISC 703 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~ 703 (842)
.+--.|++++|+|||.|-+.+..+--....|.|+||++++++.+++++++..+ ++.+.++|+.++. ..+.||.++.+
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEec
Confidence 33346889999999999999655443345799999999999999999998877 5799999999987 56899999999
Q ss_pred chhh
Q 035870 704 EMIE 707 (842)
Q Consensus 704 ~~~~ 707 (842)
..+.
T Consensus 122 ppFG 125 (185)
T KOG3420|consen 122 PPFG 125 (185)
T ss_pred CCCC
Confidence 8764
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.7e-06 Score=95.58 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=45.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC-CCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY-LGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~-~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++|+++|+.|+++|++|+|+|+... .-.+. .|. .-.++..+.++++|+....
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~-----------~G~-----~L~p~g~~~L~~LGL~d~l 95 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRI-----------VGE-----LLQPGGVNALKELGMEECA 95 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchh-----------hhh-----hcCHHHHHHHHHCCChhhH
Confidence 3899999999999999999999999999999651 00000 111 1346778999999987544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-06 Score=81.11 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.++.+++.+ ..+++||||.=||.-+...|.. .+.+|+++|++++..+.+.+..+.+|+.++|++++++..+.-
T Consensus 64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 344444444 5679999998888888777776 578999999999999999999999999999999999965432
Q ss_pred -----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 693 -----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 693 -----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+.+.||.++. .|-.+. +..++.++-++||+||.+++.....+.
T Consensus 141 l~~~~~~~tfDfaFv----DadK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV----DADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHhcCCCCceeEEEE----ccchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 4589999985 455444 458999999999999999997654444
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-05 Score=99.72 Aligned_cols=41 Identities=37% Similarity=0.571 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (842)
+||+|||||+|||+||..|++.|++|+|+|+++.+||.+..
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 48999999999999999999999999999999999997753
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.4e-07 Score=101.35 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe--C-CCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC--G-DGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~--~-~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|.+|+.+++++.|.+ . +++++.+|.||+|+..
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence 35667788888889999999999999998776654443 2 3457999999999863
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.4e-06 Score=95.82 Aligned_cols=40 Identities=43% Similarity=0.751 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
.||+|||+|.+||+||+.++++|.+|+|+|+.+.+||.+.
T Consensus 17 ~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 3899999999999999999999999999999999999554
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-06 Score=95.26 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEE----EEeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCT----IVCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~----V~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+.+. +++++.++.|+++..+++++. +...+|+ .+.|+.||+|+....
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45777888777664 789999999999998776642 2335664 689999999987543
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=93.27 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+.+.|++|+.++.|+++..++ ++| .|.. .+|+ .+.|+.||+|+....
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 4688888888888899999999999998764 443 3332 3554 578999999987654
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-06 Score=96.28 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEE---eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIV---CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++.|++|+.++.|++|..+ ++++ .|. ..+|+ .+.|+.||+|+...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 467888888888889999999999999886 4443 332 34564 47899999999865
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=86.35 Aligned_cols=120 Identities=23% Similarity=0.294 Sum_probs=96.5
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhc---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c-
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRT---GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K- 693 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~- 693 (842)
....|+.+||++|||+.++-|+=+.++|+.. +..|+++|.|+.=++..++++++.|+. ++.+.+.|.+.++ .
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccc
Confidence 3467888999999999999999999999882 456899999999999999999999997 5889999977654 2
Q ss_pred CCCccEEEEc------chhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 694 ANKYDRIISC------EMIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 694 ~~~fD~i~s~------~~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
.++||.|+.- +++.--++ ....+++....++|||||.++.++++....
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2359999973 33321111 235788999999999999999998886544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-07 Score=82.81 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=57.3
Q ss_pred eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC---C-CccEEEEcch
Q 035870 632 EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA---N-KYDRIISCEM 705 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---~-~fD~i~s~~~ 705 (842)
.|+|+.||.|+.++++|+. ..+|+++|+++..++.|+.+++-.|+.++|+++++|+.++... . .||+|++...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 6999999999999999998 7799999999999999999999999999999999998776521 1 2899998754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.8e-06 Score=93.16 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.++ .|++|+.+++|++|..+++++ .|.+ .+|+ .+.|+.||+|+....
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457888888775 589999999999998776654 3433 3444 578999999987643
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=86.28 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeC--CCc---EEEEeCCCc----EEeCCEEEEccChHHHHHhhc
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPA--DKG---CTIVCGDGS----REFYNSCVMALHAPDALKILG 277 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~---v~V~~~~G~----~~~ad~VV~A~p~~~~~~ll~ 277 (842)
...-|...+.+.+.+|++++.|++|..+ +++ |.+...++. .+.++.||+|+.+-.+.+||-
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl 264 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLL 264 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhc
Confidence 3344445554448999999999999664 443 455555564 467899999998877777763
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.1e-06 Score=94.55 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC--CC--cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG--DG--SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|..+++++.|++. +| +++.+|.||+|+..
T Consensus 212 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 212 DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 3467788888999999999999999999877666655543 56 36999999999763
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-05 Score=90.13 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|++++.|++|+.+++++.|.+.+|+++.+|.||++++.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence 4677778888888999999999999999877778888888888999999999763
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-06 Score=95.74 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=34.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++|++||..|++.|++|+|+|+. .+||.|
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 42 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTC 42 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcce
Confidence 7999999999999999999999999999984 788854
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.9e-06 Score=94.58 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||+||+.+++.| +|+|+||....||.
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 8999999999999999999999 99999999987873
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.1e-06 Score=82.08 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.|+|||+|+|||||+..+...|-.|++||+...+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 38999999999999999999988899999999999954
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=93.97 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC----CcE-EEE---eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD----KGC-TIV---CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~----~~v-~V~---~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+.++.|++|..++ ++| .|. ..+|+ .+.|+.||+||....
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 5688889998888899999999999998765 443 333 24564 578999999987654
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.2e-06 Score=96.65 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=47.2
Q ss_pred CcEEEECCChHHHHHHHHHHh-CCCeEEEEecCCCC--CCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYL--GGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~-~G~~V~VlEa~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
.||+|||||++||++|..|++ .|++|+|+|+.+.. .|++ . +..++..++++++|+....
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA--------------~----gl~prtleiL~~lGl~d~l 94 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQA--------------D----GIACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCee--------------e----EEChHHHHHHHhccchHHH
Confidence 389999999999999999999 49999999997532 2211 0 1246888999999997665
Q ss_pred c
Q 035870 78 S 78 (842)
Q Consensus 78 ~ 78 (842)
.
T Consensus 95 ~ 95 (634)
T PRK08294 95 L 95 (634)
T ss_pred H
Confidence 4
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.1e-06 Score=80.38 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
+..++..|.++||.+|||-|+|+|.++.++++. +-.++..+|+.+.-.+.|.+..++.|+.++|++.+.|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 356888999999999999999999999999988 557999999999999999999999999999999999987765
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCc-EEEE
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG-LLVL 733 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG-~~~~ 733 (842)
.+..+|.|+.-- +. +-..+-.+..+||.+| +++.
T Consensus 174 ks~~aDaVFLDl-----Pa--Pw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 174 KSLKADAVFLDL-----PA--PWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cccccceEEEcC-----CC--hhhhhhhhHHHhhhcCceEEe
Confidence 367899998742 22 3344555666888876 5554
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-05 Score=89.57 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=35.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
.||+|||||++|+++|++|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 5899999999999999999999999999999998887
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.7e-07 Score=98.89 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc--EEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS--REFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VV~A~p~ 269 (842)
-..+.+.+.+.+++.|.+++++++|++++..++++.|++++|+ ++++|.|++|+.-
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 4578888999998878999999999999998888888888876 6889999999863
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.6e-06 Score=93.54 Aligned_cols=39 Identities=38% Similarity=0.582 Sum_probs=36.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++|++||..|++.|++|+|+|+.+.+||.|
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 389999999999999999999999999999987889854
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=100.06 Aligned_cols=38 Identities=42% Similarity=0.734 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||.|||+||...++.|.+|+||||.+..||.+
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 89999999999999999999999999999999999954
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-06 Score=97.11 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=34.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||+|||+||..|++.|++|+|+|+. .+||.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 38999999999999999999999999999994 677743
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=8e-07 Score=101.21 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC--C--cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD--G--SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|+.+++++.|+..+ | +++.+|.||+++..
T Consensus 223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence 35677888888988999999999999999887777666543 3 46899999999863
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.5e-06 Score=91.02 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK- 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~- 693 (842)
...+...++.++..++++|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |++|+.+|.++..+
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhh
Confidence 456677888888889999999999999999999987 789999999999999999999999997 59999999988872
Q ss_pred ---CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 694 ---ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 694 ---~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
...+|.|+....=.-.+ +.+++.+.+ ++|...++++
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred ccccCCCCEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEe
Confidence 35889999864322221 255555544 5777788874
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=93.04 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEE-E---EeCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCT-I---VCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+.+. +++++.++.|+++..++++|. | ...+|+ .+.|+.||+|+....
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 56888888877654 789999999999998776652 2 234664 578999999987643
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.2e-06 Score=97.05 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=89.5
Q ss_pred HHHHHHcCC-CCCCeEEEeccCchHHHHHHHHh-----c--------------------------------------CCE
Q 035870 619 SLLIEKARV-SKGQEVLEIGCGWGTLAIEIVKR-----T--------------------------------------GCK 654 (842)
Q Consensus 619 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-----~--------------------------------------~~~ 654 (842)
..|+...+. +++..++|-+||+|.+.+.+|.. + ..+
T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702)
T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702)
T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce
Confidence 455666666 67889999999999999998763 1 136
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c--CCCccEEEEcchhh-hcCh-hhHHHHHHHHHhccc---
Q 035870 655 YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K--ANKYDRIISCEMIE-AVGH-EFMEEFFGCCESLLA--- 726 (842)
Q Consensus 655 v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~--~~~fD~i~s~~~~~-~~~~-~~~~~~~~~~~~~Lk--- 726 (842)
++|+|+++++++.|++++..+|+.+.+++.++|+.+++ + .++||+|++|..+. .+++ .....+.+.+.+.||
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888999999998886 2 25799999997653 2222 234555555555554
Q ss_pred cCcEEEEEe
Q 035870 727 EDGLLVLQF 735 (842)
Q Consensus 727 pgG~~~~~~ 735 (842)
||+.+++.+
T Consensus 339 ~g~~~~llt 347 (702)
T PRK11783 339 GGWNAALFS 347 (702)
T ss_pred CCCeEEEEe
Confidence 888887743
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-07 Score=96.78 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCC--CCC--CeEEEeccCchHHHHHHHHhcCCEEEEE---cCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 035870 615 MRKVSLLIEKARV--SKG--QEVLEIGCGWGTLAIEIVKRTGCKYTGI---TLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687 (842)
Q Consensus 615 ~~~~~~l~~~l~~--~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gi---d~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (842)
...++.|.+.+.. ..| ..+||||||.|.++.++.++ +..+..+ |..+.|++.|-+| |++.- +-..-
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~--~~~~~ 171 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAM--IGVLG 171 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchh--hhhhc
Confidence 4455566666554 333 36899999999999999987 5544444 3344567777666 55421 11222
Q ss_pred ccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 688 YRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 688 ~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
...+| +++.||+|-|..++-...... .-++-++.|+|+|||+++++...
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 46677 889999999987765443322 45788999999999999996554
|
; GO: 0008168 methyltransferase activity |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-06 Score=85.50 Aligned_cols=108 Identities=30% Similarity=0.341 Sum_probs=81.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCCeEEEEccccCCc--cCC-CccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGL---QDLIRLYLCDYRQLA--KAN-KYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l---~~~v~~~~~d~~~~~--~~~-~fD~i 700 (842)
+...+||-||.|.|+.+..+.+.+ ..+|+.+|+++..++.|++.+..... .++++++.+|....- ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999999998874 46999999999999999998764321 358999999986654 224 89999
Q ss_pred EEcchhhhcCh--hhHHHHHHHHHhccccCcEEEEEe
Q 035870 701 ISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 701 ~s~~~~~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.-..-...+. -.-.++++.+++.|+|||.++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98433211111 123789999999999999999987
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.3e-06 Score=93.83 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC---CCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG---DGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~~~~ad~VV~A~p~ 269 (842)
..+...+.+.+++.|++++++++|++|..+++++.|++. +++++.+|.||+|+..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence 456677788888889999999999999987666555543 2357999999999763
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.8e-06 Score=86.98 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+....-|.++.. ..|.+++..++.+.|+|.+|+ ++|+.||+|+...
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCc
Confidence 333444444444777766 788888877767799999996 9999999998765
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=92.24 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 899999999999999999999999999999887666
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.9e-07 Score=93.41 Aligned_cols=43 Identities=37% Similarity=0.628 Sum_probs=39.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT 43 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~ 43 (842)
++|+|||||+||++||..|++.|++|.++|+++.+||++....
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 5799999999999999999999999999999999999976543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=90.58 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--------TGCKYTGITLSEEQLKYAEMKVKEAGLQDL-IRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~ 686 (842)
...+.|++.+...++.+|+|-.||+|.+...+.+. ...+++|+|+++.++..|+-++.-.+.... ..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44457777778888999999999999999888762 467999999999999999988766555433 468888
Q ss_pred cccCCc--c-CCCccEEEEcchhhhc--Ch----------------h-hHHHHHHHHHhccccCcEEEEEe
Q 035870 687 DYRQLA--K-ANKYDRIISCEMIEAV--GH----------------E-FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 687 d~~~~~--~-~~~fD~i~s~~~~~~~--~~----------------~-~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|....+ . ..+||+|+++..+-.. .+ . .--.++..+.+.||+||++.+..
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 866555 2 4799999999765433 10 0 11247888999999999977643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.8e-06 Score=80.13 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHH-------HcCC-CCCeEEEEc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCK-YTGITLSEEQLKYAEMKVK-------EAGL-QDLIRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gid~s~~~~~~a~~~~~-------~~~l-~~~v~~~~~ 686 (842)
..+..+++.+++.+++..+|||||.|.....+|...+++ .+||++.+...+.|++..+ ..|. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 345677888999999999999999999999998776765 9999999998887775332 3333 346888999
Q ss_pred cccCCc----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 687 DYRQLA----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 687 d~~~~~----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
|+.+.+ .-..-|+|+++.... + +.+...+.++...||||-+++-
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 987654 114579999987643 2 2355666777788999888764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=81.87 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=136.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCC---------------------eeeecceEeecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG---------------------VDLDLGFMVFNRVT 60 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g---------------------~~~d~G~~~~~~~~ 60 (842)
||+|+|-|+.=...+..|+..|.+|+.+++++.-||-.+|.+... +.+|+=+.++ ..
T Consensus 6 DvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l--mA 83 (440)
T KOG1439|consen 6 DVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL--MA 83 (440)
T ss_pred eEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh--hc
Confidence 799999999999999999999999999999999999998865311 2233333333 13
Q ss_pred chhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhc-
Q 035870 61 YPNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELE- 137 (842)
Q Consensus 61 ~~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (842)
...+..++-+.|+...... .+-...+..|+.+..+.. -...+. ..++.-. ..+.+.+|......+.+.-.
T Consensus 84 n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t--~~Ea~~--s~lmgl~---eKrr~~kFl~~V~n~~e~~~~ 156 (440)
T KOG1439|consen 84 NGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPAT--EAEALT--SPLMGLF---EKRRVMKFLKFVLNYDEEDPK 156 (440)
T ss_pred cchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCC--HHHHhc--CCccchh---HHHHHHHHHHHHhhhhhhccc
Confidence 3445566666676654432 222333455554443321 101110 1111111 12223333333333222211
Q ss_pred CCCCCCc-cccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHH----HHHHHhhccccccCCCCceEEecC
Q 035870 138 SNPDIDR-SETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFS----VLSFCRNHHLLQLFGRPQWLTVRW 212 (842)
Q Consensus 138 ~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g 212 (842)
.....+. ..++.+++.+.+..+...+..- ..++.....+ ..+.|+.. +..|+.+ ...++...+.++..
T Consensus 157 ~~~~~~~~k~tm~~~~~~~~l~~~~~~f~g-h~~al~~dd~---~ld~p~~~~~~ri~~Y~~S---~~~yg~~~ylyP~y 229 (440)
T KOG1439|consen 157 TWQGYDLSKDTMREFLGKFGLLEGTIDFIG-HAIALLCDDS---YLDQPAKETLERILLYVRS---FARYGKSPYLYPLY 229 (440)
T ss_pred cccccccccchHHHHHHHhcccccceeeee-eeeEEEecch---hccCccHHHHHHHHHHHHH---HhhcCCCcceeccc
Confidence 1112212 2378888887766543222110 0011111111 11223322 2334433 22233444889999
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE--EEEeCCCcEEeCCEEEEc
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC--TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v--~V~~~~G~~~~ad~VV~A 266 (842)
|.+.+++++++...-.|++..+|.++.+|....++. +|.. .++...++.||+-
T Consensus 230 GlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 230 GLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-GGEVAKCKKVICD 284 (440)
T ss_pred CcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-CCceeecceEEec
Confidence 999999999998777799999999999999954453 3433 3346778876665
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=79.04 Aligned_cols=97 Identities=22% Similarity=0.328 Sum_probs=84.2
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC-ccEEEEcchhh
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK-YDRIISCEMIE 707 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~-fD~i~s~~~~~ 707 (842)
+.+++|||+|-|--++.+|-. ++.+||-+|....-+.+.++-..+.+++ |++++++.++++..+.+ ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehc--
Confidence 689999999999999998833 7888999999999999999999999997 89999999999984445 999999754
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
.. +..++.-+..++|+||.++.
T Consensus 145 --a~--L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 --AS--LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --cc--hHHHHHHHHHhcccCCcchh
Confidence 22 78888899999999998765
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-06 Score=105.09 Aligned_cols=40 Identities=43% Similarity=0.695 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|||+.+.+||..+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 6899999999999999999999999999999999999654
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.2e-05 Score=75.91 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCc--EEeCCEEEEccChHHHHHh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGS--REFYNSCVMALHAPDALKI 275 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~--~~~ad~VV~A~p~~~~~~l 275 (842)
++-+.|.+.+++.|+.+..+-+|.+.+..+++| .|-|.++. .++||.+|+|+.....+.|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 677888888999999999999999999999998 46666664 4789999999987644433
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-05 Score=75.52 Aligned_cols=99 Identities=25% Similarity=0.307 Sum_probs=73.9
Q ss_pred EEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCccCCCccEEEEcchhhhcC
Q 035870 633 VLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLAKANKYDRIISCEMIEAVG 710 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~~~~~fD~i~s~~~~~~~~ 710 (842)
|.||||-.|.+.++|.++. ..+++++|+++.-++.|+++++..|+.++++++++|- ..+++.+..|.|+..+|--..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 6899999999999999982 2379999999999999999999999999999999994 555554458999998875543
Q ss_pred hhhHHHHHHHHHhccccCcEEEEEe
Q 035870 711 HEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 711 ~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
...++.+....++..-.++++.
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEEE
T ss_pred ---HHHHHHhhHHHhccCCeEEEeC
Confidence 6778888777777666787753
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.9e-05 Score=87.08 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=33.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||+|+|||+||+.+++. .+|+|+||....||.
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 899999999999999999986 899999998887773
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-06 Score=102.99 Aligned_cols=40 Identities=50% Similarity=0.782 Sum_probs=38.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+++.+||.++
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 5899999999999999999999999999999999999764
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-05 Score=80.48 Aligned_cols=100 Identities=18% Similarity=0.039 Sum_probs=77.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCccCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
.+..++||=||.|-|+.++.+.+++ .+|+.+||++++++.+++.+... ++ .+|++++. .+.+. ..++||+||+-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~-~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDL-DIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhc-cCCcCCEEEEc
Confidence 3556899999999999999999985 59999999999999999954431 12 34787776 22221 23689999986
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.. . .+.+++.+++.|+|||.++.|.-
T Consensus 147 s~----~---~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 147 QE----P---DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CC----C---ChHHHHHHHHhcCCCcEEEECCC
Confidence 43 1 36888999999999999999754
|
|
| >PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.2e-05 Score=80.28 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=83.8
Q ss_pred cccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccC-CCCceEEecCChhHHHHHHHH
Q 035870 145 SETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLF-GRPQWLTVRWRSHSYVNKVRK 223 (842)
Q Consensus 145 ~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~L~~ 223 (842)
..+..+|+.+.++++.+.+.++.+.++..|+.+. ++. ++. ++..+. ..++.+.+.||+.++++.|.+
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~---a~~--------G~vSla~a~~gl~sV~GGN~qI~~~ll~ 136 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIH---AFA--------GLVSLAGATGGLWSVEGGNWQIFEGLLE 136 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chh---hhh--------hheeeeeccCCceEecCCHHHHHHHHHH
Confidence 5688999999999999999999999999999763 342 211 111111 235778999999999999999
Q ss_pred HhhhcCceEEeCCCeeEE-EeCCCc---EEEEeCC--Cc-EEeCCEEEEccChHHHH
Q 035870 224 QLESWGCQIRTSSEVCSV-LPADKG---CTIVCGD--GS-REFYNSCVMALHAPDAL 273 (842)
Q Consensus 224 ~l~~~G~~i~~~~~V~~I-~~~~~~---v~V~~~~--G~-~~~ad~VV~A~p~~~~~ 273 (842)
.- +++| ++++|++| ...+++ +.|++.+ +. .-.+|.||+|+|.....
T Consensus 137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 76 8899 99999999 444444 4565543 22 34579999999986443
|
8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=90.18 Aligned_cols=38 Identities=42% Similarity=0.691 Sum_probs=34.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||.+|++||..|++.|.+|+|+|+. .+||.|
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c 39 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA 39 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence 68999999999999999999999999999985 578855
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.6e-05 Score=87.04 Aligned_cols=33 Identities=30% Similarity=0.617 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHH----hCCCeEEEEecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLA----KAGVEVVLYEKDDY 34 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~----~~G~~V~VlEa~~~ 34 (842)
||+|||||+|||+||+.++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999775
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.4e-05 Score=81.44 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCc-EEEEeC-----CCcEEeCCEEEEccChHHHHH
Q 035870 214 SHSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKG-CTIVCG-----DGSREFYNSCVMALHAPDALK 274 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~-v~V~~~-----~G~~~~ad~VV~A~p~~~~~~ 274 (842)
.+.|++.|.+.+.+. |.+++++++|+.|.+.+++ |.|++. +..++.|+.|++.+....+.-
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 578999999999887 8999999999999999887 888763 224799999999998886653
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.6e-06 Score=84.09 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
++...++.. ..+..++|+|||.|-... ..+.+.+.|.|++...+.-+++. | ......+|+.++| .+.
T Consensus 35 ~v~qfl~~~--~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 35 MVRQFLDSQ--PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREE 102 (293)
T ss_pred HHHHHHhcc--CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCC
Confidence 344455544 358899999999997753 34788999999999998888754 1 2267899999999 778
Q ss_pred CccEEEEcchhhhcChh-hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 696 KYDRIISCEMIEAVGHE-FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~-~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+||.++++.++||+..+ ....+++++.+.|+|||..++..+...
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 99999999999999755 456789999999999999988776543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=83.64 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCeEEEeccCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
+.+|||+.||+|..++.++.+ .| .+|+++|+|++.++.++++++.+++. ++++.+.|+..+. ...+||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 468999999999999999987 23 58999999999999999999998876 7899999988765 236799999865
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+ +. ...++..+.+.+++||.+++..
T Consensus 123 f---Gs--~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GT--PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CC--cHHHHHHHHHhcccCCEEEEEe
Confidence 3 22 3578888999999999999963
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=85.46 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC---CCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA---GVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~---G~~V~VlEa~~~~GG 37 (842)
++|+|||+|++|+..|.+|.+. -..|.|+|.....|+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 6899999999999999999886 123999999999987
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-06 Score=96.30 Aligned_cols=38 Identities=55% Similarity=0.771 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
|+|+|||||+|||+||..|.+.|++|++||+++.+||.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~ 39 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL 39 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc
Confidence 78999999999999999999999999999999999994
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.1e-06 Score=100.10 Aligned_cols=40 Identities=50% Similarity=0.835 Sum_probs=38.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+++.+||.++
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 6899999999999999999999999999999999999775
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.2e-05 Score=86.71 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeC-CCc-EEEEeCCCcEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPA-DKG-CTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~-~~~-v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
.+...|.+.+++. +++++. ..|+.+..+ +++ +.|.+.+|..+.||.||+|+..+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4556666677666 567754 477777665 444 478889998999999999998874
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.1e-05 Score=77.22 Aligned_cols=169 Identities=12% Similarity=0.069 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCCC-CeEEEeccC--chHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE
Q 035870 609 DLKAAQMRKVSLLIEKARVSKG-QEVLEIGCG--WGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683 (842)
Q Consensus 609 ~l~~aq~~~~~~l~~~l~~~~~-~~vLDiGcG--~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~ 683 (842)
.+..+.+..+.+.++.+.-..| ...|||||| +-.....+|+. ++++|+-+|.++-.+..++..+....- .+..+
T Consensus 47 ~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~ 125 (267)
T PF04672_consen 47 EAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEE
Confidence 4566667777777777665534 579999999 44567778776 889999999999999999998876531 13899
Q ss_pred EEccccCCc---c----CCCcc-----EEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCcc
Q 035870 684 YLCDYRQLA---K----ANKYD-----RIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSS 750 (842)
Q Consensus 684 ~~~d~~~~~---~----~~~fD-----~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 750 (842)
+++|+++.. . .+-+| .|+.+.++||+++ +++..+++.++..|.||.+++++..+..... .......
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-~~~~~~~ 204 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-ERAEALE 204 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-HHHHHHH
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-HHHHHHH
Confidence 999998754 1 12333 7888899999987 6899999999999999999999887764321 1111111
Q ss_pred chhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 751 DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
....+-- ....+-|.+++... . .||++.+
T Consensus 205 ~~~~~~~-~~~~~Rs~~ei~~~-f--~g~elve 233 (267)
T PF04672_consen 205 AVYAQAG-SPGRPRSREEIAAF-F--DGLELVE 233 (267)
T ss_dssp HHHHHCC-S----B-HHHHHHC-C--TTSEE-T
T ss_pred HHHHcCC-CCceecCHHHHHHH-c--CCCccCC
Confidence 2222221 11344567777543 3 3787643
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.6e-06 Score=94.31 Aligned_cols=40 Identities=43% Similarity=0.541 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999999764
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-06 Score=93.01 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=37.3
Q ss_pred CcEEEECCChHHHHHHHHHHh--CCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~--~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||..|++ .|++|+|+|+.+.+||.++
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 589999999999999999987 6999999999999999765
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-05 Score=78.89 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=95.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
.....+...++++|||+.++.|+-+.++++.. ...|++.|+++.-+...++++++.|.. ++.+...|..... ..
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccc
Confidence 34456778899999999999999999999883 479999999999999999999999986 7888888987773 33
Q ss_pred CCccEEEEc------chhhhcCh--------------hhHHHHHHHHHhcc----ccCcEEEEEeecCCC
Q 035870 695 NKYDRIISC------EMIEAVGH--------------EFMEEFFGCCESLL----AEDGLLVLQFISIPD 740 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~--------------~~~~~~~~~~~~~L----kpgG~~~~~~~~~~~ 740 (842)
..||.|+.- +++..-++ +...++++.+.+.+ ||||+++..+++...
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 469999973 23322221 12467899999999 999999999887543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=78.98 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=72.9
Q ss_pred HHHHHHHHHcC-CCC--CCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC
Q 035870 616 RKVSLLIEKAR-VSK--GQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ 690 (842)
Q Consensus 616 ~~~~~l~~~l~-~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (842)
-|+..+.++.+ +++ +.++||+||+.|+++..+.++. ..+|+|+|+.+. ..+ ..+.++++|+.+
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch
Confidence 46777888877 555 4899999999999999999884 489999999986 111 256777777543
Q ss_pred Cc---------c--CCCccEEEEcchhhhcCh---------hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 691 LA---------K--ANKYDRIISCEMIEAVGH---------EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 691 ~~---------~--~~~fD~i~s~~~~~~~~~---------~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.. . .++||+|+|-.....-++ +-....+.-+.+.|||||.+++-.+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 21 2 268999999773332221 11334455566789999999986655
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00023 Score=73.54 Aligned_cols=247 Identities=15% Similarity=0.224 Sum_probs=137.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--------------------CeeeecceEeecCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--------------------GVDLDLGFMVFNRVTY 61 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~~~~~ 61 (842)
||+|+|-|+.=...+..|+-.|.+|+++++++.-|+-.+|.+.. .+.+|.-+..+. ..
T Consensus 8 Dvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~--A~ 85 (434)
T COG5044 8 DVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF--AN 85 (434)
T ss_pred cEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc--cc
Confidence 89999999999999999999999999999999999998885431 133444444442 34
Q ss_pred hhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 035870 62 PNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESN 139 (842)
Q Consensus 62 ~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (842)
..+..++.+.|+...... .+-...+.+++.+..+.. -...+. ...++-. ..+.+.+|......+.......
T Consensus 86 s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~n--e~ei~~--s~~lsL~---eKr~vmrFl~~V~n~~~~~~~~ 158 (434)
T COG5044 86 SELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYN--EAEIFT--SPLLSLF---EKRRVMRFLKWVSNYAEQKSTL 158 (434)
T ss_pred chHHHHHHHhChHhheeeeeccccEEecCCcEEECCcc--HHhhhc--CCCcchh---hHHHHHHHHHHHHhHHhhhhhc
Confidence 456677777777655432 222333445554443321 111111 1111111 1122233332233332222222
Q ss_pred CCCCccccHHHHHHhc-CCCHHHHHHHHHHhhhcccCCCchhhccCCHH-HHHHHHhhccccccCCCCceEEecCChhHH
Q 035870 140 PDIDRSETLGQFVNSR-GYSELFQKAYLIPICGSIWSCPSEGVTSFSAF-SVLSFCRNHHLLQLFGRPQWLTVRWRSHSY 217 (842)
Q Consensus 140 ~~~~~~~s~~~~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 217 (842)
.....+.+..+++.+. +.+....+.+...++ ..+. -+.+...+. -++.|+.+- ..++...+.+++-|.+.+
T Consensus 159 ~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~-l~ld---l~~p~re~~erIl~Y~~Sf---~~yg~~pyLyp~YGl~El 231 (434)
T COG5044 159 QELYESKDTMEFLFEKFGLSGATEEFIGHGIA-LSLD---LDIPAREALERILRYMRSF---GDYGKSPYLYPRYGLGEL 231 (434)
T ss_pred hhhhhcccHHHHHHHHHccCcchhhhhhhhhh-hhcc---ccCCchHHHHHHHHHHHhh---cccCCCcceeeccCchhh
Confidence 2222233455554433 333322222222211 1111 111111222 234555542 334456678889889999
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEc
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A 266 (842)
++++++...-.|++..+|+++.+|..... | +|.. ++.+..|..||..
T Consensus 232 ~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 232 SQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred hHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCC
Confidence 99999988778999999999999988776 3 2322 3347788887765
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.5e-05 Score=77.81 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
+.+..+-..+..-...+|||+|||.|..+-.+.+.. -.+++++|.|+.|++.++..++................+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 344445444444456699999999998765554432 357999999999999999877654321111111111222222
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
....|+|++.++|..++++....+++++.+.+.+ .+++.+.+.+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 2344999999999999887788888888887776 77776665553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=88.81 Aligned_cols=44 Identities=27% Similarity=0.245 Sum_probs=35.2
Q ss_pred hcCceEEeCCCeeEEEeCCCcEEEEeC-CCcEEe--CCEEEEccChH
Q 035870 227 SWGCQIRTSSEVCSVLPADKGCTIVCG-DGSREF--YNSCVMALHAP 270 (842)
Q Consensus 227 ~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VV~A~p~~ 270 (842)
+.|++++++++|++|+.+++.+.+... +|+++. +|++|+|+...
T Consensus 68 ~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 68 KSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 348899999999999998887777653 355666 99999998753
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00016 Score=82.28 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.|+++|++|++++.+++|...++++.|+..+| +++.+|.||+|+..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence 46777888889999999999999999988766666766555 37999999999863
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6e-05 Score=75.82 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-----EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-----CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-----v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+...+.+.++..|++|.+|-+|+.|..+.+. ++|....|+++++..||-++..
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccc
Confidence 477788888899999999999999999987764 5666666788999988877653
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=82.68 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++++++++|++|+. . .|++.+|+++.+|.||++++.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 45777888889899999999999999963 2 466677888999999999864
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=83.25 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
...++.+++.++..++ +|||+-||.|.+++.+|+. ..+|+|||+++++++.|+++++.+++. +++|+.++..++.
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKA 259 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHH
Confidence 3566777888887766 8999999999999999997 779999999999999999999999996 8999998765542
Q ss_pred ---------------cCCCccEEEEcch
Q 035870 693 ---------------KANKYDRIISCEM 705 (842)
Q Consensus 693 ---------------~~~~fD~i~s~~~ 705 (842)
....+|+|+....
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 1236899987644
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=8e-06 Score=91.56 Aligned_cols=39 Identities=44% Similarity=0.739 Sum_probs=33.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||||||||++|++||+.+++.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 799999999999999999999999999999999999654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=76.63 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc-EEeCCEEEEccC
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS-REFYNSCVMALH 268 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p 268 (842)
..++.+...+.|+++|++|+++++|++|+.++ |++.+|+ ++.++.||-|+.
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCC
Confidence 45777777888888999999999999997643 5666776 599999999975
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.6e-05 Score=78.05 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
.+..+.+++.+.+.++..|||||+|.|.++..+++. +.+|+++|+++..++..+++... .++++++.+|+.++. .
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccH
Confidence 355678899999989999999999999999999998 68999999999999999987652 348999999999887 2
Q ss_pred C---CCccEEEEcchhhhcChhhHHHHHHHHHh
Q 035870 694 A---NKYDRIISCEMIEAVGHEFMEEFFGCCES 723 (842)
Q Consensus 694 ~---~~fD~i~s~~~~~~~~~~~~~~~~~~~~~ 723 (842)
. .....|+++-.. +++. .++.++-.
T Consensus 92 ~~~~~~~~~vv~NlPy-~is~----~il~~ll~ 119 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NISS----PILRKLLE 119 (262)
T ss_dssp GHCSSSEEEEEEEETG-TGHH----HHHHHHHH
T ss_pred HhhcCCceEEEEEecc-cchH----HHHHHHhh
Confidence 2 356788887665 4433 44444444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.1e-05 Score=95.39 Aligned_cols=40 Identities=48% Similarity=0.761 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||+.|++.|++|+|+|+.+.+||...
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999654
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1e-05 Score=99.16 Aligned_cols=40 Identities=40% Similarity=0.596 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+.+.+||..+
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 5899999999999999999999999999999999999654
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=88.07 Aligned_cols=41 Identities=32% Similarity=0.366 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHH-hCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLA-KAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~-~~G~~V~VlEa~~~~GG~~~s 41 (842)
|+|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.++.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 57999999999999999765 679999999999999997763
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.8e-05 Score=78.63 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCC---C--cEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGD---G--SREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~---G--~~~~ad~VV~A~p 268 (842)
.+...+.+.|+++|.+++++++|+.+..++++ +.|+..+ | ++++||.+.+++.
T Consensus 253 Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 253 EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 67788888888899999999999999999884 5555432 3 3689999999875
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=68.20 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=73.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHH-----hcCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEccccCCccCCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVK-----RTGCKYTGITLSEEQLKYAEMKVKEAG--LQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~v~gid~s~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
..+..+|+|+|||-|.++..++. .++.+|++||.++..++.++++.+..+ +..++++..++..+.......+.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 36788999999999999999999 678999999999999999999998887 54567777777665543456778
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
++.. |.-++- -+.+++...+ |+-.+++
T Consensus 103 ~vgL---HaCG~L-s~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGL---HACGDL-SDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEe---ecccch-HHHHHHHHHH---cCCCEEE
Confidence 8764 444431 2344444444 5444443
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=89.07 Aligned_cols=40 Identities=43% Similarity=0.601 Sum_probs=38.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 6899999999999999999999999999999999999765
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.2e-05 Score=67.67 Aligned_cols=150 Identities=16% Similarity=0.171 Sum_probs=99.2
Q ss_pred HHHcCCCCCCeEEEeccCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEccccCCc---cC
Q 035870 622 IEKARVSKGQEVLEIGCGW-GTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ--DLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~~~---~~ 694 (842)
++..+.-.|.+|||+|.|. |..++.+|.. +...|..+|-+++.++..++....+-.+ .++.++..+..... ..
T Consensus 22 l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq 101 (201)
T KOG3201|consen 22 LRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQ 101 (201)
T ss_pred HhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhh
Confidence 3333334578999999995 4445556655 6789999999999999998876655221 13444444433222 34
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHh
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMS 774 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 774 (842)
..||.|++..++.. ++....+.+.|+++|+|.|..++..+-.. -|++.+.+...
T Consensus 102 ~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPRRg------------------------~sL~kF~de~~ 155 (201)
T KOG3201|consen 102 HTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPRRG------------------------QSLQKFLDEVG 155 (201)
T ss_pred CcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEecCccc------------------------chHHHHHHHHH
Confidence 58999999887655 35578999999999999999777432211 14555566666
Q ss_pred hcCCcEEEEEEecCccHHHHHHHHHHHH
Q 035870 775 VASRLCVEQVENIGIHYYQTLRCWRKNF 802 (842)
Q Consensus 775 ~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (842)
. .||.+.-.+ .|..++..-..++
T Consensus 156 ~-~gf~v~l~e----nyde~iwqrh~~L 178 (201)
T KOG3201|consen 156 T-VGFTVCLEE----NYDEAIWQRHGRL 178 (201)
T ss_pred h-ceeEEEecc----cHhHHHHHHHHHH
Confidence 5 799876554 4555554444443
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00033 Score=84.51 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC--cEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK--GCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.++++|++|++++.|++|..++. ...|++.+|+++.+|.||+|++.
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 4556677888888999999999999986542 35678889999999999999863
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.4e-05 Score=94.36 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
|+|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 68999999999999999999999999999998776653
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=75.97 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=74.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC-----ccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK-----YDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~-----fD~i~s~ 703 (842)
....|+|.-||.|+.++..|.+ ++.|++||+++.-+..|+.+++-.|++++|+|+++|+.++-..-+ +|+|...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4568999999999999999998 899999999999999999999999999999999999887652223 4455554
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcE
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
.... +.++...-+-.+...++|.|.
T Consensus 173 ppwg--gp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PPWG--GPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCC--CcchhhhhhhhhhhhcchhHH
Confidence 4322 222334444455556666543
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-05 Score=89.41 Aligned_cols=39 Identities=49% Similarity=0.612 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||.+
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 589999999999999999999999999999999999965
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.8e-05 Score=95.35 Aligned_cols=40 Identities=45% Similarity=0.584 Sum_probs=37.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||++|++.|++|+|+|+.+.+||..+
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 6899999999999999999999999999999999999654
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=79.15 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhh-cCceEEeCCCeeEEEeCCC-cE-EEEeC--CC--cEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLES-WGCQIRTSSEVCSVLPADK-GC-TIVCG--DG--SREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~-~v-~V~~~--~G--~~~~ad~VV~A~p~ 269 (842)
.+.+.|.+.+++ .+++|..++.+.+|..+++ .+ .|.+. ++ .++.++.||+|+..
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 577888888865 4799999999999999888 44 45443 23 46889999999863
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=80.55 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.++++|++++++++|++|.. ++.+.|++.+|+++.||.||+++...
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 3444556999999999999976 55677888899899999999998643
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.7e-05 Score=74.37 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=76.6
Q ss_pred HHHHHHcCCCCCC--eEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCCeEEEEccc
Q 035870 619 SLLIEKARVSKGQ--EVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA------G--LQDLIRLYLCDY 688 (842)
Q Consensus 619 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~------~--l~~~v~~~~~d~ 688 (842)
+.+++.+++++|. +|||+=+|+|..++.++.. ||+|+++|-|+......++.++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 5778888999988 9999999999999999998 999999999999999999988874 2 225799999997
Q ss_pred cCCc--cCCCccEEEEcchhhhc
Q 035870 689 RQLA--KANKYDRIISCEMIEAV 709 (842)
Q Consensus 689 ~~~~--~~~~fD~i~s~~~~~~~ 709 (842)
.+.. ...+||+|+.-.|+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 6654 23479999999998874
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=73.52 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCeEEEeccCchHH-HHHHHHh--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 630 GQEVLEIGCGWGTL-AIEIVKR--TGCKYTGITLSEEQLKYAEMKVK-EAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 630 ~~~vLDiGcG~G~~-~~~la~~--~~~~v~gid~s~~~~~~a~~~~~-~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
..+|+=||||.=.+ ++.++++ .+..|+++|++++..+.+++-+. ..++..+++|+.+|..+.. .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999996544 4556655 36789999999999999999888 6678889999999998776 347899999765
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
....- .+...+++.++.+.++||..+++-
T Consensus 201 lVg~~-~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMD-AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccc-cchHHHHHHHHHhhCCCCcEEEEe
Confidence 54322 234789999999999999999984
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.1e-05 Score=71.72 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=81.9
Q ss_pred CeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh-hc
Q 035870 631 QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE-AV 709 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~-~~ 709 (842)
+.+.|+|+|+|.++..+|+. ..+|++|+.++.-.+.|.+++.-.|+. +++++.+|+++... +..|+|+|- |+. .+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f-e~ADvvicE-mlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF-ENADVVICE-MLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc-cccceeHHH-HhhHHh
Confidence 68999999999999988886 779999999999999999998777765 89999999998874 467888874 443 33
Q ss_pred ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 710 GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 710 ~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
-++.....++.+-..||-++.++=+.
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccHH
Confidence 34445667777888899999887543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.1e-05 Score=76.64 Aligned_cols=142 Identities=23% Similarity=0.279 Sum_probs=99.1
Q ss_pred hHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHH-HcC-CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCC
Q 035870 585 NELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIE-KAR-VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLS 661 (842)
Q Consensus 585 ~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~-~l~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s 661 (842)
.+-+++++|...+||.- + +.+..+.+.- .+. ++.-.++|-+|.|.|..++.+.+.|+ .+++-+|++
T Consensus 254 g~d~rLYldG~LQfsTr---------D--e~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLD 322 (508)
T COG4262 254 GDDLRLYLDGGLQFSTR---------D--EYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLD 322 (508)
T ss_pred cCceEEEEcCceeeeec---------h--hhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecC
Confidence 45678888888888632 1 1333333321 122 23456899999999999999999874 589999999
Q ss_pred HHHHHHHHHHHH-----HcCC-CCCeEEEEccccCCc--cCCCccEEEEcch---hhhcChhhHHHHHHHHHhccccCcE
Q 035870 662 EEQLKYAEMKVK-----EAGL-QDLIRLYLCDYRQLA--KANKYDRIISCEM---IEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 662 ~~~~~~a~~~~~-----~~~l-~~~v~~~~~d~~~~~--~~~~fD~i~s~~~---~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
|+|++.++++.. +..+ +.+++++..|+.++- ....||.||.... -..++.-+-.++..-+++.|+++|.
T Consensus 323 P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl 402 (508)
T COG4262 323 PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGL 402 (508)
T ss_pred HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCce
Confidence 999999994322 1122 348999999988776 3469999997421 1111222346888899999999999
Q ss_pred EEEEeec
Q 035870 731 LVLQFIS 737 (842)
Q Consensus 731 ~~~~~~~ 737 (842)
+++|.-+
T Consensus 403 ~VvQags 409 (508)
T COG4262 403 MVVQAGS 409 (508)
T ss_pred EEEecCC
Confidence 9998643
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=85.01 Aligned_cols=36 Identities=47% Similarity=0.603 Sum_probs=33.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
+||+|||||++|+.||+.|++.|++|+|+|+++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999877643
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=79.31 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+++.|++++++++|++|..+++++.|++.+|+++.||.||+|+..
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 344555699999999999999887778888899999999999999764
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=89.49 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=36.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++|++||..+++.|.+|+|+|+++.+||.|
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 89999999999999999999999999999878899976
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00039 Score=74.25 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+++.+.+.+++.|++|+++|+|..|+..++.+ .|.+++|+++.+|+||+|..-
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 55788999999999999999999999999988864 788899999999999999753
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=86.46 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
||+|||||.|||+||+.+++.|.+|+|+||...
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 899999999999999999999999999999775
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.4e-05 Score=84.37 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=83.1
Q ss_pred hhcCChHHHHhccCCCCccccc-ccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEE
Q 035870 580 HYDLSNELFSLFLDESMTYSCA-VFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658 (842)
Q Consensus 580 ~Yd~~~~~~~~~l~~~~~ys~~-~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gi 658 (842)
+++...-.++.+++-++..|.+ +|+.... +-.-.+..+-+.++++.+..+||+-||||.++..+|+. -.+|+||
T Consensus 337 l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~----~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGv 411 (534)
T KOG2187|consen 337 LVGGDPYITESLLGLTFRISPGAFFQTNTS----AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGV 411 (534)
T ss_pred EEccccEEEeecCCeEEEECCchhhccCcH----HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeee
Confidence 3333334566677777777754 4454432 22234456677888999999999999999999999987 6799999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 659 d~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
++|++.++.|+++++.+|++ |++|+++-.+++-
T Consensus 412 Ei~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 412 EISPDAVEDAEKNAQINGIS-NATFIVGQAEDLF 444 (534)
T ss_pred ecChhhcchhhhcchhcCcc-ceeeeecchhhcc
Confidence 99999999999999999998 8999999666543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.4e-05 Score=92.25 Aligned_cols=40 Identities=38% Similarity=0.758 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||..+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999653
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.2e-06 Score=76.92 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
...++||+|+|.|..+..++.. -.+|.+.++|..|....+++ + ..++. ..+-+.-+-+||+|.|...+.-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl~-~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVLT-EIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cceee-ehhhhhcCceeehHHHHHHHHh
Confidence 4579999999999999998876 35799999999988877654 2 22221 1111112357999999988876
Q ss_pred cChhhHHHHHHHHHhcccc-CcEEEEEe
Q 035870 709 VGHEFMEEFFGCCESLLAE-DGLLVLQF 735 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~Lkp-gG~~~~~~ 735 (842)
.-+ +-.+++.++.+|+| +|++++.-
T Consensus 182 c~~--p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 182 CFD--PFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hcC--hHHHHHHHHHHhccCCCcEEEEE
Confidence 654 78999999999999 89988754
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=74.78 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCC-----CCCeEEEeccCchHH-HHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccc
Q 035870 616 RKVSLLIEKARVS-----KGQEVLEIGCGWGTL-AIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLCDY 688 (842)
Q Consensus 616 ~~~~~l~~~l~~~-----~~~~vLDiGcG~G~~-~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~ 688 (842)
+.+..+.+.|... ..-++||||||.-.+ .+..++.++++++|+|+++..++.|+++++.+ +|+++|+++...-
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 3444454554432 245899999997644 45555558999999999999999999999999 9999999987642
Q ss_pred cC-----Cc-cCCCccEEEEcchhhhcCh
Q 035870 689 RQ-----LA-KANKYDRIISCEMIEAVGH 711 (842)
Q Consensus 689 ~~-----~~-~~~~fD~i~s~~~~~~~~~ 711 (842)
.. +. +.+.||..+|+..|+.-.+
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS--
T ss_pred ccccchhhhcccceeeEEecCCccccChh
Confidence 21 11 4468999999999887654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.6e-05 Score=88.69 Aligned_cols=40 Identities=43% Similarity=0.737 Sum_probs=37.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999643
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.8e-05 Score=91.73 Aligned_cols=40 Identities=45% Similarity=0.706 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 6899999999999999999999999999999999999654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.2e-05 Score=87.60 Aligned_cols=40 Identities=50% Similarity=0.803 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||++||+||+.|++.|++|+|+|+.+.+||..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 5899999999999999999999999999999999999664
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.2e-05 Score=83.53 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=35.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (842)
+||+|||||+|||+||..|++.|++|+|+|+ ...||.+..
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~ 46 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTT 46 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceec
Confidence 5899999999999999999999999999996 467886543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.3e-05 Score=87.65 Aligned_cols=39 Identities=46% Similarity=0.693 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 689999999999999999999999999999999999864
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.2e-05 Score=75.80 Aligned_cols=67 Identities=34% Similarity=0.526 Sum_probs=49.1
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchh-HHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPN-MMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~-~~~l~~~lGl~~~~~ 78 (842)
||+|||||-+||||||..+++ ..+|.|+|++-.+||-+. .|.+.|+...... ..=+++++|+..+..
T Consensus 78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~EigvpYede 147 (328)
T KOG2960|consen 78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVPYEDE 147 (328)
T ss_pred ceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCCcccC
Confidence 899999999999999999966 689999999988998443 4555553222222 234578888875543
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.8e-05 Score=84.23 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=34.4
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999999887773
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00044 Score=66.84 Aligned_cols=103 Identities=29% Similarity=0.407 Sum_probs=74.3
Q ss_pred EEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC--Cc-cC-CCccEEEEcchh
Q 035870 633 VLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ--LA-KA-NKYDRIISCEMI 706 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~-~~fD~i~s~~~~ 706 (842)
++|+|||.|... .+++... ..++++|+++.+++.++......+.. .+.+...|... ++ .. ..||.+.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3444322 48999999999999965554332111 16888888776 55 33 489999444444
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4443 688999999999999999997766543
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0005 Score=75.07 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
||||||||.||+-||+..++.|.+++++=-+
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 8999999999999999999999999988654
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=72.68 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=53.1
Q ss_pred CceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC-cEEeCCEEEEccChHHHH
Q 035870 205 PQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG-SREFYNSCVMALHAPDAL 273 (842)
Q Consensus 205 ~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~A~p~~~~~ 273 (842)
+..|....-.+.+++.|...+++.|++|+++++|++| +++++.|.+.++ ++++||.||+|+......
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWS 143 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccc
Confidence 3344446778899999999999999999999999999 344577877543 469999999999865443
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 842 | ||||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 1e-32 | ||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-32 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 2e-30 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 5e-29 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 8e-29 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 3e-27 | ||
| 2yg6_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 6e-06 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 7e-06 | ||
| 1sez_A | 504 | Crystal Structure Of Protoporphyrinogen Ix Oxidase | 2e-05 | ||
| 3rha_A | 482 | The Crystal Structure Of Oxidoreductase From Arthro | 3e-05 | ||
| 2yg5_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 3e-05 | ||
| 2yg7_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 3e-05 | ||
| 2yg3_A | 453 | Structure-Based Redesign Of Cofactor Binding In Put | 3e-05 | ||
| 4e0v_A | 497 | Structure Of L-Amino Acid Oxidase From The B. Jarar | 9e-05 | ||
| 1b37_A | 472 | A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys | 4e-04 | ||
| 3kpf_A | 478 | X-Ray Structure Of The Mutant Lys300met Of Polyamin | 4e-04 | ||
| 1dus_A | 194 | Mj0882-A Hypothetical Protein From M. Jannaschii Le | 5e-04 | ||
| 2xaf_A | 852 | Crystal Structure Of Lsd1-Corest In Complex With Pa | 6e-04 | ||
| 2x0l_A | 734 | Crystal Structure Of A Neuro-Specific Splicing Vari | 7e-04 | ||
| 2ejr_A | 662 | Lsd1-Tranylcypromine Complex Length = 662 | 7e-04 | ||
| 2v1d_A | 730 | Structural Basis Of Lsd1-Corest Selectivity In Hist | 7e-04 | ||
| 2iw5_A | 666 | Structural Basis For Corest-dependent Demethylation | 7e-04 | ||
| 2dw4_A | 660 | Crystal Structure Of Human Lsd1 At 2.3 A Resolution | 8e-04 | ||
| 2hko_A | 664 | Crystal Structure Of Lsd1 Length = 664 | 8e-04 | ||
| 2h94_A | 664 | Crystal Structure And Mechanism Of Human Lysine-Spe | 8e-04 | ||
| 1reo_A | 486 | L-Amino Acid Oxidase From Agkistrodon Halys Pallas | 8e-04 |
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: P15i-A394c Double Mutant Length = 453 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504 | Back alignment and structure |
|
| >pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter Aurescens Length = 482 | Back alignment and structure |
|
| >pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c Mutant Length = 453 | Back alignment and structure |
|
| >pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant Length = 453 | Back alignment and structure |
|
| >pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: Wild Type Enzyme Length = 453 | Back alignment and structure |
|
| >pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu Venom Length = 497 | Back alignment and structure |
|
| >pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472 | Back alignment and structure |
|
| >pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478 | Back alignment and structure |
|
| >pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii Length = 194 | Back alignment and structure |
|
| >pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852 | Back alignment and structure |
|
| >pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734 | Back alignment and structure |
|
| >pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662 | Back alignment and structure |
|
| >pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730 | Back alignment and structure |
|
| >pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666 | Back alignment and structure |
|
| >pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660 | Back alignment and structure |
|
| >pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664 | Back alignment and structure |
|
| >pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664 | Back alignment and structure |
|
| >pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas Length = 486 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 842 | |||
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 1e-130 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 1e-125 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 1e-116 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 1e-81 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 8e-69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 2e-54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 6e-54 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 7e-54 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 3e-44 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 1e-38 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 5e-28 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 3e-27 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 2e-26 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 7e-26 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 6e-23 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-22 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 8e-22 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 1e-19 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 3e-19 | |
| 3utf_A | 513 | UDP-galactopyranose mutase; nucleotide binding, fl | 2e-18 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 5e-18 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 1e-17 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 3e-17 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-16 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 4e-16 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 7e-16 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 1e-15 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 2e-15 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 3e-15 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 7e-15 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 9e-15 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 4e-14 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 4e-14 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 8e-14 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 1e-13 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-13 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 3e-13 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-13 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 6e-13 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 1e-12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 1e-12 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 2e-12 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 2e-12 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 5e-12 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 6e-12 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 7e-12 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 1e-11 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 1e-11 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 1e-11 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 1e-11 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 2e-11 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-11 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 2e-11 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 5e-11 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 9e-11 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-10 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 1e-10 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 1e-10 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 2e-10 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 3e-10 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 3e-10 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 4e-10 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 7e-10 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 9e-10 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 1e-09 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 1e-09 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 3e-09 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 3e-09 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 3e-09 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-09 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 4e-09 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 4e-09 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 6e-09 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 6e-09 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 7e-09 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 9e-09 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 1e-08 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 1e-08 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 1e-08 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 1e-08 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 1e-08 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 2e-08 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 2e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 3e-08 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 3e-08 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 3e-08 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 4e-08 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 4e-08 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 5e-08 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 5e-08 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 7e-08 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 9e-08 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 1e-07 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 1e-07 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 2e-07 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 3e-07 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 3e-07 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 3e-07 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 3e-07 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 5e-07 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 5e-07 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 6e-07 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 6e-07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 7e-07 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 7e-07 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 7e-07 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 8e-07 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 8e-07 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 1e-06 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 1e-06 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 1e-06 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 1e-06 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-06 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 1e-06 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 1e-06 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 1e-06 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-06 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 2e-06 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 2e-06 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 2e-06 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 2e-06 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 2e-06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 2e-06 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 3e-06 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 3e-06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 3e-06 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 3e-06 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 3e-06 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 3e-06 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 4e-06 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 4e-06 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 4e-06 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 5e-06 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 7e-06 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 8e-06 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 9e-06 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 1e-05 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 1e-05 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 1e-05 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 1e-05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 1e-05 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 1e-05 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 2e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 3e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 3e-05 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 3e-05 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 4e-05 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 4e-05 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 5e-05 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 6e-05 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 6e-05 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 7e-05 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 8e-05 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 1e-04 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 1e-04 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 1e-04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 1e-04 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-04 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 1e-04 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 2e-04 | |
| 1im8_A | 244 | YECO; methyltransferase, adenosylhomocysteine, str | 2e-04 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 2e-04 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 2e-04 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 2e-04 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 2e-04 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 2e-04 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 2e-04 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 2e-04 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 2e-04 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 3e-04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 3e-04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 3e-04 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 4e-04 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 4e-04 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 4e-04 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 5e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 5e-04 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 5e-04 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 8e-04 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 8e-04 |
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 390 bits (1003), Expect = e-130
Identities = 79/307 (25%), Positives = 124/307 (40%), Gaps = 13/307 (4%)
Query: 545 WSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFK 604
+ + + + +I HYD+S++ F+LF D + TYSCA F+
Sbjct: 6 YHHHHSSGLVPRGSHMAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFE 65
Query: 605 SEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQ 664
+ L+ AQ KV L ++K + G +L+IGCGWGT V+R G+TLS+ Q
Sbjct: 66 PPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQ 125
Query: 665 LKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESL 724
E + ++ L + A DRI+S E E GHE ++FF C ++
Sbjct: 126 HARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNI 183
Query: 725 LAEDGLLVLQFISIPDERYNEYRL---------SSDFIKEYIFPGGCLPSLSRITSAMSV 775
+ DG + +Q R FI IFPGG LPS +
Sbjct: 184 MPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGE- 242
Query: 776 ASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKS 835
+ V + ++ HY +TLR W + K + + ++ + Y C F
Sbjct: 243 KAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTS-EEVYNRYMKYLRGCEHYFTD 301
Query: 836 YTLGNYQ 842
L
Sbjct: 302 EMLDCSL 308
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 377 bits (970), Expect = e-125
Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 13/284 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
+ L N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K +
Sbjct: 3 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 62
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L++GCGWG + V++ G+TLS+ Q + + V + R+ L
Sbjct: 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 122
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERY---- 743
+ Q DRI+S E GHE + FF LL DG+++L I+ +
Sbjct: 123 WEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHER 180
Query: 744 -----NEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798
+ FI IFPGG LPS+ + S A+ V +V+++ HY +TL W
Sbjct: 181 GLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECAS-ANGFTVTRVQSLQPHYAKTLDLW 239
Query: 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
+ + +AL +++ + Y CA F+ + Q
Sbjct: 240 SAALQANKGQAIAL-QSEEVYERYMKYLTGCAEMFRIGYIDVNQ 282
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-116
Identities = 84/297 (28%), Positives = 125/297 (42%), Gaps = 20/297 (6%)
Query: 562 RHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLL 621
+ L + HYD SNE F L+LD SMTYSCA F+ D L+ AQ K L
Sbjct: 5 GDTTSGTQLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLA 64
Query: 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLI 681
++K + G +L+IGCGWG+ V G+TLSE Q + + E
Sbjct: 65 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK 124
Query: 682 RLYLCDYRQLAKANKYDRIISCEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQ 734
+ + + + + DRI+S E G E + FF +L +DG ++L
Sbjct: 125 EVRIQGWEEFDE--PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182
Query: 735 FISIPDERYN---------EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785
I+IPD+ FI IFPGG LP +S++ S + VE+
Sbjct: 183 TITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSS-NAGWKVERYH 241
Query: 786 NIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
IG +Y TL W + + +AL + + +Y C+ F+ Q
Sbjct: 242 RIGANYVPTLNAWADALQAHKDEAIAL-KGQETCDIYMHYLRGCSDLFRDKYTDVCQ 297
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 1e-81
Identities = 59/438 (13%), Positives = 131/438 (29%), Gaps = 52/438 (11%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
R+A+IGAG +GL + L +AG + + E+ D++GG + + G ++G ++ +
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-S 66
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWG----SRNGLSSLFAQKKNVLNPYFW 116
Y + E + G ++ + E G + + + +L +
Sbjct: 67 YDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQ 126
Query: 117 QMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC 176
+ V D +F+ G + ++ P +
Sbjct: 127 GYDA--NGHYNKVHE-----------DLMLPFDEFLALNGCEA-ARDLWINPFTAFGYGH 172
Query: 177 PSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236
A VL + ++ W T + + + L +
Sbjct: 173 FDN----VPAAYVLKYLDFVTMMSFAKGDLW-TWADGTQAMFEHLNATL---EHPAERNV 224
Query: 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYS 296
++ + D I D RE + V+ + L A DE +
Sbjct: 225 DITRITREDGKVHIHTTDWDRES-DVLVLTVPLEKFLDYSD--ADDDEREYFSKIIHQQY 281
Query: 297 DIFLHRDKRF------------MPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSL 344
+ K + + ++ ++ TY L + + +
Sbjct: 282 MVDACLVKEYPTISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQ 341
Query: 345 PF-----LVTLNPDHVPEHTLL--KWSTGHPVPSVAASKASL--ELDHIQGKRGIWFCGA 395
L + P ++ + P S KA +++ +QG+R ++ G
Sbjct: 342 EECRQMVLDDMETFGHPVEKIIEEQTWYYFPHVSSEDYKAGWYEKVEGMQGRRNTFYAGE 401
Query: 396 YQGYGFHEDGLKAGMTAA 413
+G ++
Sbjct: 402 IMSFGNFDEVCHYSKDLV 419
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 8e-69
Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 19/279 (6%)
Query: 557 AKYFFRHISRQNTLTQARRNISR-HYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQM 615
A+Y+ N + HY + + D + +E L++AQ
Sbjct: 46 ARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAELHRLESAQA 105
Query: 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675
+ + + +++ GCG G + +R G + G+TLS Q + + +E
Sbjct: 106 EFL--MDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL 163
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735
+ D +R +C+ + + E+ + + + F L G V
Sbjct: 164 RIDDHVRSRVCNMLDTPFD--KGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT 221
Query: 736 ISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTL 795
RY + I + + S AM+ +RL + ++ TL
Sbjct: 222 GCWNP-RYGQPSKWVSQINAHFECN--IHSRREYLRAMA-DNRLVPHTIVDLTPD---TL 274
Query: 796 RCWRKNFMEKQSKILALGFNDKFIRTWE---YYFDYCAA 831
W L G FI ++ + + AA
Sbjct: 275 PYWELRATSS----LVTGIEKAFIESYRDGSFQYVLIAA 309
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-54
Identities = 33/260 (12%), Positives = 69/260 (26%), Gaps = 25/260 (9%)
Query: 592 LDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT 651
+D ++ + +SE K + L R+ G +L++G G G + +
Sbjct: 1 MDIPRIFTIS--ESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH 58
Query: 652 GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH 711
G TGI +S A+ + +E G+ + + D K D G
Sbjct: 59 GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG 118
Query: 712 EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITS 771
L G++++ E + +L +
Sbjct: 119 --FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI----AQACGVSSTSDFLTLPGLVG 172
Query: 772 AMSVA----SRLCVEQVENIGIHY---YQTLRCWRKNFMEKQSKILALGFND-------- 816
A + + E + + T+R W + + +
Sbjct: 173 AFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVT 232
Query: 817 --KFIRTWEYYFDYCAAGFK 834
+ W +
Sbjct: 233 YARECFGWGVFALIARLEHH 252
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 6e-54
Identities = 47/271 (17%), Positives = 89/271 (32%), Gaps = 9/271 (3%)
Query: 571 TQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKG 630
+ + YD + F+ E++ + D + A R +I V G
Sbjct: 3 APTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSG 62
Query: 631 QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ 690
VL++GCG G A+ + + TGI++S Q+ A + AGL + + D
Sbjct: 63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 691 LA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLS 749
L + +D + + E + + +L G + + + +
Sbjct: 123 LPFEDASFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKK-- 178
Query: 750 SDFIKEYIFPGGCLPSLSRITSAMSVASR--LCVEQVENIGIHYYQTLRCWRKNFMEKQS 807
+ GG + SL I S + L V +I +L + F +S
Sbjct: 179 --EAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTAEAFENARS 236
Query: 808 KILALGFNDKFIRTWEYYFDYCAAGFKSYTL 838
++ + R + Y L
Sbjct: 237 QVEPFMGAEGLDRMIATFRGLAEVPEAGYVL 267
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 7e-54
Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 25/275 (9%)
Query: 562 RHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLL 621
I N+ + +++ D +++ E+ S + +
Sbjct: 2 TLIENLNS-DKTFLENNQYTDEGVKVYEFIFGENYISS-------------GGLEATKKI 47
Query: 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLI 681
+ +++ +VL+IG G G + I ++ G GI + + A + + I
Sbjct: 48 LSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMAN---ERVSGNNKI 104
Query: 682 RLYLCDYRQLAKA-NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740
D N +D I S + I A+ E + F C L G L++ +
Sbjct: 105 IFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164
Query: 741 ERYNEYRLSSDFIKEYIFPGG-CLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWR 799
+ D KEY+ L ++ ++ A +++ ++ Q L
Sbjct: 165 K-----ENWDDEFKEYVKQRKYTLITVEEYADILT-ACNFKNVVSKDLSDYWNQLLEVEH 218
Query: 800 KNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFK 834
K E + + L L KFI + + +
Sbjct: 219 KYLHENKEEFLKLFSEKKFISLDDGWSRKIKDSKR 253
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 3e-44
Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 18/284 (6%)
Query: 566 RQNTLTQARRNISRHYDLSNE---LFSLFLDESMTYSCAVFKSEDEDLKAAQMRK----V 618
T + N +YD + F ++ E + + ++++ A +R
Sbjct: 12 PAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLA 71
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
S L + + + L++G G+G A +V++ G + ++ Q K E +AGL
Sbjct: 72 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA 131
Query: 679 DLIRLYLCDYRQLAKA-NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
D I + + ++ N YD I S + + F C +L G++ +
Sbjct: 132 DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPM 189
Query: 738 IPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRC 797
D + + SL S L + +
Sbjct: 190 KEDGIDKSSI--QPILDRIKLHD--MGSLGLYRSLAK-ECGLVTLRTFSRPDSLVHHYSK 244
Query: 798 WRKNFMEKQSKILALG---FNDKFIRTWEYYFDYCAAGFKSYTL 838
+ +++ S+I + F R E++ + AG ++
Sbjct: 245 VKAELIKRSSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGG 288
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-38
Identities = 90/486 (18%), Positives = 153/486 (31%), Gaps = 84/486 (17%)
Query: 2 RVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTF-DGVDLDLG--FMVF 56
V V+G GISGL ++Y L++A +VVL E + LGG ++V +G +LG +
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP 63
Query: 57 NRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSR-----NGLSSLFAQKKNVL 111
+ LG+D E+ + + G GL L
Sbjct: 64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFS 123
Query: 112 NPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICG 171
P FW LRE+ K + PD ET+ F R E+ + +C
Sbjct: 124 KPLFWAGLRELTKPRG----------KEPD----ETVHSFAQRRLGPEVASL-AMDSLCR 168
Query: 172 SIWSCPSEGVTSFSAFSVLSFCRNHH----------------------LLQLFGRPQWLT 209
+++ S ++ S F L H L R +
Sbjct: 169 GVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWS 228
Query: 210 VRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269
+R + L S G + VC + +G V S + + A+ A
Sbjct: 229 LRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPA 288
Query: 270 PDALKILGNQATFDETR---------ILGAFQYVYSDIFLHRDKRFMPQNP------AAW 314
++L +A + QY + + + +P + +
Sbjct: 289 SVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVY 348
Query: 315 SAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHV-----------------PE 357
+ F E S L + + + +T L+ + P
Sbjct: 349 DSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPS 408
Query: 358 HTLLK-WSTGHPVPSV--AASKASLELDHIQGKRGIWFCGA-YQGYGFHEDGLKAGMTAA 413
H L+ P ++ S + + GA Y+G D +++G AA
Sbjct: 409 HCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAV-NDCIESGRQAA 467
Query: 414 HGVLGK 419
VLG
Sbjct: 468 VSVLGT 473
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-28
Identities = 80/479 (16%), Positives = 129/479 (26%), Gaps = 85/479 (17%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
M VAV+G GISGL A+ L G + VL E LGG T G ++ G F
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF-LDR 75
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPY---FWQ 117
P +L ++ + + L
Sbjct: 76 EPATRALAAALNLEGRI---------------RAADPAAKRRYVY-TRGRLRSVPASPPA 119
Query: 118 MLREIIKFKDDVLGYLEELESNPDIDRS-ETLGQFVNSRGYSELFQKAYLIPICGSIWSC 176
L I L EL S + E+L F Q L + I++
Sbjct: 120 FLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQV-LLDAVQTGIYAG 178
Query: 177 PSEGVTSFSAFSVLSFCRNHHLLQLFG---------------------RPQWLTVRWRSH 215
E ++ + F +L H + G T
Sbjct: 179 DVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQ 238
Query: 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREF---YNSCVMALHAPDA 272
++ + L G + V + D G ++ + R V+A A
Sbjct: 239 VLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHAT 295
Query: 273 LKILGNQATFDETRILGAFQY--------VYSDIFLHRDKRFMPQNPAAWSAWNFLESFD 324
K+L ++ Y + L F PA
Sbjct: 296 AKLLRPLDD-ALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHA 354
Query: 325 S----------KVCLT-----YWLNVLQNLGETSLPFLVT------LNPDHVPEHTLLK- 362
S +V + L E +L L P T +
Sbjct: 355 STTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFR 414
Query: 363 WSTGHPVPSV--AASKASLELDHIQGKRGIWFCGA-YQGYGFHEDGLKAGMTAAHGVLG 418
W G P ++ A+++ +Q G+ G Y+G G D ++ A ++
Sbjct: 415 WPLGIPQYNLGHLERVAAID-AALQRLPGLHLIGNAYKGVGL-NDCIRNAAQLADALVA 471
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 49/318 (15%), Positives = 105/318 (33%), Gaps = 40/318 (12%)
Query: 2 RVAVIGAGISGLVSAYVLAKA------GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMV 55
V +IG GI+GL +A+ + K +E+ L E +GG +TV DG ++ G
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDS 66
Query: 56 FNRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYF 115
F + + + LG++ + V+ G L + +
Sbjct: 67 F-LERKKSAPQLVKDLGLEHLL------VNNATGQSYVL-VNRTLHPMPKGAVMGIPTKI 118
Query: 116 WQMLRE-IIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLI-PICGSI 173
+ + ++ + ++LG+F R E+ + LI P+ I
Sbjct: 119 APFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVE--NLIEPLLSGI 176
Query: 174 WSCPSEGVTSFSAFSVL-----------------SFCRNHHLLQLFGRPQWLTVRWRSHS 216
++ + ++ S F + L + Q+ T+ +
Sbjct: 177 YAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQT 236
Query: 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKIL 276
V ++ KQL ++ ++V + + ++ +G +S ++ A +L
Sbjct: 237 LVEEIEKQL--KLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGML 294
Query: 277 GNQATFDETRILGAFQYV 294
L
Sbjct: 295 SELPAISH---LKNMHST 309
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 71/488 (14%), Positives = 167/488 (34%), Gaps = 74/488 (15%)
Query: 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
R+ ++G GI+GL +AY +A + + L E + LGG T DG ++ G +
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSY-VA 64
Query: 60 TYPNMMEFFESLGVDMEM----SDMSFSVSLEKGHGCEWGSRNGLSSLFA--QKKNVLNP 113
+ + E++G+ ++ + +F + H G+ G+ + ++ +L
Sbjct: 65 RKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTE 124
Query: 114 YFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSI 173
Q + +++ L +S ++ LG+++ R L +K + P+ I
Sbjct: 125 EEKQEVADLL---------LHPSDSLRIPEQDIPLGEYLRPRLGDALVEK-LIEPLLSGI 174
Query: 174 WSCPSEGVTSFSAFSVLSFCRNHH--------------------LLQLFGRPQWLTVRWR 213
++ + +++F+ + + Q+L++
Sbjct: 175 YAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETG 234
Query: 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDAL 273
S + ++ + LE +IR + + ++ D G + D E+ + ++ + P +
Sbjct: 235 LESLIERLEEVLE--RSEIRLETPLLAISRED-GRYRLKTDHGPEYADYVLLTIPHPQVV 291
Query: 274 KILGNQATFDETRILGAFQYVYSDIFLHRDKRF-------------MPQNPAAWSAWNFL 320
++L + + ++ + IF + +
Sbjct: 292 QLLPDAHLPELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWN 351
Query: 321 ESFDSKVCLTYWLNVLQN----------LGETSLPFLVT-LNPDHVPEHTLL-KWSTGHP 368
S L ++ N L + L L P+ ++ + G P
Sbjct: 352 HSAPDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLP 411
Query: 369 VPSV--AASKASLELDHIQGKRGIWFCGA-YQGYGFHEDGLKAGMTAAHGVLGKSCTLSS 425
+V A + + + GI+ G Y G G D + + T + + S
Sbjct: 412 AYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGL-PDCVASAKTMIESIELE---QSH 467
Query: 426 NPRHMIPS 433
+ +
Sbjct: 468 TDESVNET 475
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-26
Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 38/285 (13%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGF-MVFNRV 59
MR V+GAG+ GL++ LA+ G E+++ EK +GG + + G L G +
Sbjct: 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHG 60
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
+ LG +E+ + N + + K W+ L
Sbjct: 61 EDGPLAHLLRILGAKVEIVNS-----------------NPKGKILWEGKIFHYRESWKFL 103
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
K K L L E+ N +++ + F + L G S
Sbjct: 104 SV--KEKAKALKLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLS 161
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWR----SHSYVNKVRKQLESWGCQIRTS 235
+T+ + L+ G + ++++ + + +I T
Sbjct: 162 DLTALELAKEI-----RAALRWGG-------PGLIRGGCKAVIDELERIIMENKGKILTR 209
Query: 236 SEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQA 280
EV + +K + D ++ + + + +K++G
Sbjct: 210 KEVVEINIEEKK--VYTRDNEEYSFDVAISNVGVRETVKLIGRDY 252
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-23
Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 33/244 (13%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
RVAVIGAG+SGL +AY L G+ V ++E + GG ++V+ DG+ D G +
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTM-TESE 73
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPY---FWQM 118
++ +SLG+ + + + + +
Sbjct: 74 GDVTFLIDSLGLREKQQ-----------------FPLSQNKRYIARNGTPVLLPSNPIDL 116
Query: 119 LREIIKFKDDVLGYLEEL------ESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGS 172
++ L L E + + D E++ F E+ + P
Sbjct: 117 IKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDY-LIDPFVAG 175
Query: 173 IWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQI 232
+ ++ +F L +L + FG +R + K + ++ +
Sbjct: 176 TCGGDPDSLSMHHSFPEL-----WNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKK 230
Query: 233 RTSS 236
R
Sbjct: 231 RQRG 234
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 2e-22
Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 20/222 (9%)
Query: 593 DESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG 652
D ++ C FK + + ++ ++ +IGCG G + +
Sbjct: 10 DFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK 69
Query: 653 CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA-NKYDRIISCEMIEAVGH 711
+ TGI L + ++ +A D ++ L + D I S I +G
Sbjct: 70 GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGF 129
Query: 712 E-FMEEFFGCCESLLAEDGLLVLQFISI-PDERYNEYRLSSDFIKEYIFPGGCLPSLSRI 769
E M E+ L + G + + S ER E DF + P +S I
Sbjct: 130 ERGMNEWS----KYLKKGGFIAVSEASWFTSERPAEIE---DFWMD------AYPEISVI 176
Query: 770 TSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILA 811
+ + R H+ CW +++ Q ++
Sbjct: 177 PTCIDKMERAGYTPTA----HFILPENCWTEHYFAPQDEVRE 214
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 8e-22
Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 15/187 (8%)
Query: 625 ARVSKGQEVLEIGCGWG--TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIR 682
+ G V + CGW LA++ G + GI E L A L I
Sbjct: 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQIT 173
Query: 683 LYLCDYRQLAKANKYDRIISCEMIEAV-GHEFMEEFFGCCESLLAEDGLLVLQFISIPDE 741
L+ D +L YD + S + + E + L G LV F++ P
Sbjct: 174 LHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPA 233
Query: 742 RYNEYRLSSD-------FIKEYIFPGGCLPSLSRITSAMSVASRL-----CVEQVENIGI 789
+ +++ +F P + + + ++L + E+
Sbjct: 234 LSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRA 293
Query: 790 HYYQTLR 796
+ T+
Sbjct: 294 RLFPTVI 300
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 51/338 (15%), Positives = 113/338 (33%), Gaps = 24/338 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
VA++GAG SGL +A L KAG+ V + E D +GG T T DG L++G +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP-DQ 65
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLRE 121
++ + LG+ G K ++ +M
Sbjct: 66 TALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDL 125
Query: 122 IIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGV 181
+ + D+D + + Q++ ++ + + I G + + P+
Sbjct: 126 AAQIGAEEPWAHPLAR---DLD-TVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSF 181
Query: 182 TSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSV 241
++ A + + + L V ++ + L G + ++ V +V
Sbjct: 182 SALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL---GDDVFLNAPVRTV 238
Query: 242 LPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFD------ETRILGAFQYVY 295
+ G T++ R + ++A+ +I ++D + ++
Sbjct: 239 KWNESGATVLADGDIRVEASRVILAVPPNLYSRI-----SYDPPLPRRQHQMHQHQSLGL 293
Query: 296 SD-IFLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYW 332
+ + F ++ + + + V Y
Sbjct: 294 VIKVHAVYETPFWREDGLSGTGF----GASEVVQEVYD 327
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 3e-19
Identities = 63/467 (13%), Positives = 136/467 (29%), Gaps = 74/467 (15%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNRV 59
++ +IGAG +GL +A L + G + LYE +D GG +++ + +G DLG V
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVI-FS 69
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
Y + + + S +G + +N + L Q + + L
Sbjct: 70 HYQYFDDVMDWAVQGWNVLQ-RESWVWVRGRWVPYPFQNNIHRLPEQDR-------KRCL 121
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
E+++ + + + + + E ++ P +W+ P
Sbjct: 122 DELVRSH-----------ARTYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPC 169
Query: 180 ------------GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLES 227
V + R+ ++ + ++++L S
Sbjct: 170 LMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGG-TGIIYQAIKEKLPS 228
Query: 228 WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRI 287
+ + ++ TI +G Y+ + + + L++
Sbjct: 229 EKLTFNSGFQAIAIDA--DAKTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEW 286
Query: 288 LGA-----FQYVYSDIFLHRDKRFMPQNPAAW----------------SAWNFLESFDSK 326
+ + A W S ++ +
Sbjct: 287 PAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGH 346
Query: 327 VCLT-------YWLNVLQNLGETSLPFLVTLNP----DHVPEHTLLKWSTGHPVPSVAAS 375
L Y L E + + N D + + G+P P + +
Sbjct: 347 WSLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRN 406
Query: 376 KASLELDHIQGKRGIWFCG---AYQGYGFHEDG-LKAGMTAAHGVLG 418
+ R I+ G A++ ++D G+ A VLG
Sbjct: 407 NLLEKAQPELMSRCIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVLG 453
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 88.8 bits (219), Expect = 2e-18
Identities = 55/329 (16%), Positives = 105/329 (31%), Gaps = 36/329 (10%)
Query: 1 MRVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGHAKT-VTFDGVDLDLGFMVFNR 58
+ V VIGAG +GL +A L + G ++ + ++ GG A T VT +G D+G V
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF- 69
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPY--FW 116
Y + + + +W + +S + Q + V P+
Sbjct: 70 SHYKYFDDCLDEALPKED----------------DWYTHQRISYVRCQGQWVPYPFQNNI 113
Query: 117 QMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSC 176
ML + + K LE+ + +T +++ ++ P +W+
Sbjct: 114 SMLPKEEQVKCIDGMIDAALEARVANTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAV 172
Query: 177 PSEGVTSFSAFS-----VLSFCRNHHLLQLFGRPQWLTVRWR------SHSYVNKVRKQL 225
P+ + L + +L +R + V L
Sbjct: 173 PTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTL 232
Query: 226 ESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDET 285
+ +V V +K T+ DG+ Y V + + + +Q T
Sbjct: 233 PKEKTRFGEKGKVTKVNANNK--TVTLQDGTTIGYKKLVSTMAVDFLAEAMNDQELVGLT 290
Query: 286 RILGAFQYVYSDIFLHRDKRFMPQNPAAW 314
+ L + + R R W
Sbjct: 291 KQLF-YSSTHVIGVGVRGSRPERIGDKCW 318
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 5e-18
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 3/142 (2%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
L + + VL+ G G + I G K GI +S+ QLK AE +E +
Sbjct: 14 FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK- 72
Query: 680 LIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738
+ + D R+L K + S I + ++E + +L GL + F++
Sbjct: 73 -LNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131
Query: 739 PDERYNEYRLSSDFIKEYIFPG 760
DERYN+ + + G
Sbjct: 132 KDERYNKGEKIGEGEFLQLERG 153
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 44/260 (16%), Positives = 91/260 (35%), Gaps = 23/260 (8%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT---FDGVDLDLGFMVFNRV 59
V+G G SGL +A L AG +V+L E + LGG A + G+ +++G +R
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
+P + + G+ + F+ + + A +
Sbjct: 64 HHPRLAAELDRYGIPTAAAS-EFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDA 122
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
I K LE+L L ++V+ + + +L+ ++ P++
Sbjct: 123 HRIDLEKGLENQDLEDL--------DIPLNEYVDKLDLPPV-SRQFLLAWAWNMLGQPAD 173
Query: 180 GVTSFSAFSVLSFCR--NHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237
SA +L ++ +L + + S V+ + +++ IR +
Sbjct: 174 QA---SALWMLQLVAAHHYSILGVVLSLDEVFSNG-SADLVDAMSQEIPE----IRLQTV 225
Query: 238 VCSVLPADKGCTIVCGDGSR 257
V + + + DG
Sbjct: 226 VTGIDQSGDVVNVTVKDGHA 245
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 3e-17
Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 21/280 (7%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG-FMVFNRV 59
M+ VIGAG+ GL+SA L+KAG EV ++E+ GG +++ G L G F +
Sbjct: 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNG 60
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
+ F + + + + R L +
Sbjct: 61 PGGPLACFLKEVEASVNIVRSEM-----------TTVRVPLKKGNPDYVKGFKDISFNDF 109
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
++ +KD + L + + + +L ++ S+ E K + CG S S+
Sbjct: 110 PSLLSYKDRMKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIK-FADSFCGWALSLKSD 168
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVC 239
V F ++ ++ + G ++ + + + G +I T EV
Sbjct: 169 EVPVEEVFEII-----ENMYRFGG---TGIPEGGCKGIIDALETVISANGGKIHTGQEVS 220
Query: 240 SVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQ 279
+L + + D + + L +
Sbjct: 221 KILIENGKAAGIIADDRIHDADLVISNLGHAATAVLCSEA 260
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
L +++ + +IGCG G + + + TG+ + +++GLQ+
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 680 LIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHE-FMEEFFGCCESLLAEDGLLVLQFIS 737
+ + L + + D I S I +G E + E+ L + G L + S
Sbjct: 97 RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWR----KYLKKGGYLAVSECS 152
Query: 738 IPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRC 797
+ DF + P + I + ++ + V + C
Sbjct: 153 WFTDERPAEIN--DFWMD------AYPEIDTIPNQVAKIHKAGYLPVA----TFILPENC 200
Query: 798 WRKNFMEKQSKILA 811
W ++ +
Sbjct: 201 WTDHYFTPKVAAQK 214
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 13/259 (5%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVT 60
V V+G GISG+ +A +L +G+ VV+ E D +GG T+ +DLG T
Sbjct: 6 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-T 64
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKN-VLNPYFWQML 119
++ + LG++ + + G F N +
Sbjct: 65 QNRILRLAKELGLETYKVNEVERLIHH-----VKGKSYPFRGPFPPVWNPITYLDHNNFW 119
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
R + ++ + + T+ + ++ ++E K + +
Sbjct: 120 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTES-AKQLATLFVNLCVTAETH 178
Query: 180 GVTSFSAFSVLSFCR-NHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238
V++ + C ++ Q S ++ L G +++ V
Sbjct: 179 EVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL---GDRVKLERPV 235
Query: 239 CSVLPADKGCTIVCGDGSR 257
+ + + +
Sbjct: 236 IYIDQTRENVLVETLNHEM 254
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 7e-16
Identities = 31/187 (16%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
+S YD F D+ + + ++ ++L+
Sbjct: 12 AVSGKYDEQRRKFIPCFDDFYGV---------------------SVSIASVDTENPDILD 50
Query: 636 IGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694
+G G G L+ ++++ +T + +SE+ L+ A+ + + ++ DY +
Sbjct: 51 LGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---NLKVKYIEADYSKYDFE 107
Query: 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIK 754
KYD ++S I + E +E + S+L E G+ + + + + L+ +
Sbjct: 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTIWR 166
Query: 755 EYIFPGG 761
+Y+ G
Sbjct: 167 QYVENSG 173
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 1e-15
Identities = 37/262 (14%), Positives = 81/262 (30%), Gaps = 12/262 (4%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V VIG G GL + L AG + +L E D +GG + + DG ++G +
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW-HQS 100
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREI 122
++ + +S SF+ S H + + + + ++ L +
Sbjct: 101 HVWREITRYKMHNALSP-SFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNV 159
Query: 123 IKFKDDVLG-YLEELESNPDIDR--SETLGQFVNS-RGYSELFQKAYLIPICGSIWSCPS 178
+ + ++ P+ + + + ++ R L +++ L
Sbjct: 160 DGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTL 219
Query: 179 EGVTSFSAFSVLSFCR--NHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWG-CQIRTS 235
E S L + + + ++ + ++ G
Sbjct: 220 ENS---SFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFG 276
Query: 236 SEVCSVLPADKGCTIVCGDGSR 257
V SV+ + DG
Sbjct: 277 CPVRSVVNERDAARVTARDGRE 298
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 24/293 (8%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG----FMVFN 57
V V+G G +GL SA+ L KAG +V + E GG T + DL F+
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFS 72
Query: 58 RVTYPNM-----------MEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQ 106
+ N+ +++ LGV+++ + + S +G S +
Sbjct: 73 EGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQS--DTSLSGQSVTYRA 130
Query: 107 KKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYL 166
K Y ++L++ + + L + + + G + Y ++ Y
Sbjct: 131 AKADTFGYMSELLKKATD-QGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYD 189
Query: 167 IPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLF-GRPQWLTVRWRSHSYVNKVRKQL 225
+ + + RN + T + ++
Sbjct: 190 SEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRI 249
Query: 226 ESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREF---YNSCVMALHAPDALKI 275
+ I +EV S+ +G T+ G + + + + ++
Sbjct: 250 GT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRL 300
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Length = 261 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 3e-15
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 26/168 (15%)
Query: 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV-KEAGLQDLIRL 683
+ G V IG L + ++R G T S+ + DL+ +
Sbjct: 41 ENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDI 99
Query: 684 YLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLL------------ 731
++LA +D +++ +I E SL+ +
Sbjct: 100 TAEIPKELAGH--FDFVLNDRLINRFTTEEARRACLGMLSLVGSGTVRASVKLGFYDIDL 157
Query: 732 ----------VLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRI 769
L P ++ +R + D + + P G + + +
Sbjct: 158 KLIEYGEQSGTLAKFFDPSDKTFHFREAGDVLDRALVPHGLIDKPTLL 205
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 7e-15
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 12/133 (9%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQD 679
++ + S + V+++GCG G L ++K + + TG+ +S L+ A+ ++ L
Sbjct: 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80
Query: 680 LIRLYLCDYRQ------LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
L Q + + YD E+IE + + F +
Sbjct: 81 NQWERL-QLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV--- 136
Query: 734 QFISIPDERYNEY 746
++ P+ YN
Sbjct: 137 -IVTTPNIEYNVK 148
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 9e-15
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
+++ E + A++ V + ++ + + VL++ CG G +E+ +R G + G+ L
Sbjct: 14 TIYRRRIERV-KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDL 71
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH---EFMEEF 717
EE L+ A K KE L+ I D ++A N++D + + + E + +
Sbjct: 72 HEEMLRVARRKAKERNLK--IEFLQGDVLEIAFKNEFDAVTM--FFSTIMYFDEEDLRKL 127
Query: 718 FGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKE 755
F L G+ + F + + ++ E
Sbjct: 128 FSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGE 165
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 4e-14
Identities = 41/282 (14%), Positives = 95/282 (33%), Gaps = 22/282 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--GVDLDLGFMVFNRV 59
V ++GAG++GL +AYVLA AG +V + E + GG +T + G +LG M
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE- 93
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
+ + E+ + + + +N + KK+ +
Sbjct: 94 KHRIVREYIRKFDLRLNEFSQE-------NDNAWYFIKNIRKKVGEVKKDPGLLKYPVKP 146
Query: 120 REIIKFKDDVLGYL--EELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCP 177
E K + + +E + S L ++ L ++ L P +
Sbjct: 147 SEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDL 206
Query: 178 SEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237
S S + ++ + ++ + + + ++ ++ +++
Sbjct: 207 L-NEDSGYYVSFIESLKHDDI--FAYEKRFDEIVDGMDKLPTAMYRDIQD---KVHFNAQ 260
Query: 238 VCSVLPADKGCTIVC----GDGSREFYNSCVMALHAPDALKI 275
V + D+ T+V + + ++ + I
Sbjct: 261 VIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLI 302
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 4e-14
Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC--KYTGITLSEEQLKYAEMKVKEAGLQD 679
+ + ++V+++GCG G L + ++ + + TG+ +S L+ A+ ++K L +
Sbjct: 22 VAVLKSVNAKKVIDLGCGEGNL-LSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE 80
Query: 680 LIRLYLCDYRQ------LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+ R + Q + + YD E+IE + ++ F +
Sbjct: 81 MQRKRI-SLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV--- 136
Query: 734 QFISIPDERYNEY 746
+S P++ YN +
Sbjct: 137 -IVSTPNKEYNFH 148
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 8e-14
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
+ +EVL+IGC G L +K G + +GI E + A+ K+ L D +
Sbjct: 32 EWKEVLDIGCSSGALG-AAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGD-----IETM 85
Query: 689 RQLAKANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY 746
+ ++D +I +++E + +E+ + + ++G++ SIP+ +
Sbjct: 86 DMPYEEEQFDCVIFGDVLEHLFDPWAVIEK----VKPYIKQNGVI---LASIPNVSHISV 138
Query: 747 RL 748
Sbjct: 139 LA 140
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
+ L++ CG G L + + + LS+E L AE K + GL+ RL D
Sbjct: 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDI 93
Query: 689 RQLAKANKYDRIISCEMIEAVGH----EFMEEFFGCCESLLAEDGLLVLQFIS------- 737
L K+D I +++ + + ++++F + L E G+ + S
Sbjct: 94 SNLNINRKFDLITC--CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151
Query: 738 IPDERYNEYRLSSDFIKEYIF 758
+ + +N + E F
Sbjct: 152 LGNNDFNYDDDEVFYYWENQF 172
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
+I + ++ G ++IG G G L+I + K++ + S+ + A + +A L D
Sbjct: 36 IINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94
Query: 681 IRLYLCDYRQLA-KANKYDRIISCEMI 706
I++ D + + N D I+S +
Sbjct: 95 IQIVQGDVHNIPIEDNYADLIVSRGSV 121
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 3e-13
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKY-TGITLSEEQLKYAEMKVKEAGLQDLIRLYL 685
VS+G +L++G L IE+V+R K + E + A V+ GL++ I++ L
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 686 CD-YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734
+ + ++ I M G + LA L+LQ
Sbjct: 73 ANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQ 118
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 3e-13
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
Query: 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683
+ K +VL++ CG G + + G + G+ +SE+ ++ A K +
Sbjct: 33 MKYMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESN--VEF 89
Query: 684 YLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER 742
+ D R+L+ + +D +I + I + + F +L G ++ F + +
Sbjct: 90 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL 149
Query: 743 YNEYRLSSDFIKEYI 757
K +I
Sbjct: 150 PRLKESLVVGQKYWI 164
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 6e-13
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 23/147 (15%)
Query: 577 ISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEI 636
+ + D +L +L + ++ Q + E +V G+++LEI
Sbjct: 2 MEKRLDYITDLMALGPTANA-----------RTIQRRQTAHRLAIAEAWQVKPGEKILEI 50
Query: 637 GCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEM------KVKEAGLQDLIRLYLCDY 688
GCG G L+ + + G TGI ++ + L D + ++
Sbjct: 51 GCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110
Query: 689 RQLAKA----NKYDRIISCEMIEAVGH 711
+DR++ +
Sbjct: 111 LSDDLGPIADQHFDRVVLAHSLWYFAS 137
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--QDLIRLYLC 686
VLE+ G G L + G + T + LS L ++ EA +D L
Sbjct: 82 VSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140
Query: 687 DYRQLAKANKYDRIIS-CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
D A ++ ++ I + + L G +L
Sbjct: 141 DMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 1e-12
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKY-TGITLSEEQLKYAEMKVKEAGLQ 678
L + ++K + + +IG L VK + + + + A+ +V+ +GL
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT 71
Query: 679 DLIRLYLCD-YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734
+ I + + + K + D I+ M G + + LA L+LQ
Sbjct: 72 EQIDVRKGNGLAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQ 124
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683
+V G+ + +IGCG GT + + + TG+ LSEE L+ A+ K E +
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH--VDF 83
Query: 684 YLCDYRQLAKANKYDRIISCEMIEAVGH----EFMEEFFGCCESLLAEDGLLVLQFIS-- 737
++ D R+L D I + +++ + +++ F LL + G L+ S
Sbjct: 84 WVQDMRELELPEPVDAITI--LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141
Query: 738 -----IPDERYNEYRLSSDFI 753
+ Y + S +I
Sbjct: 142 KMETLFNGKTYATHAEQSSYI 162
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 36/259 (13%), Positives = 90/259 (34%), Gaps = 11/259 (4%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
RV V+GAG+SG+ +A L++AG+ ++++ E D++GG F G++++LG V
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 65
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
M + + +++ + ++ ++N ++
Sbjct: 66 GGKMNPIWPIVNSTLKLRN--------FRSDFDYLAQNVYKEDGGVYDEDYVQKRIELAD 117
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
+ + + + L + + G + ++ P
Sbjct: 118 SVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRV 177
Query: 181 VTSFSAFSVLSF--CRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238
+ + + +F + R V + + Y+ K + +++ + V
Sbjct: 178 TSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVV 237
Query: 239 CSVLPADKGCTIVCGDGSR 257
+ + G T+ D S
Sbjct: 238 REIKYSPGGVTVKTEDNSV 256
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 5e-12
Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 7/142 (4%)
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
+++ A++ +VL++GCG G ++ + G T +E + + ++ L
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENLN 168
Query: 679 DLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS- 737
I L D YD I+S + + E + + G ++
Sbjct: 169 --ISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226
Query: 738 ---IPDERYNEYRLSSDFIKEY 756
+P + + + +KEY
Sbjct: 227 TDDVPCPLPFSFTFAENELKEY 248
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 601 AVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL 660
+ +D A L+ ++R + +L++ CG GT K G+ L
Sbjct: 14 LFYLGRGKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEHFTKE-FGDTAGLEL 70
Query: 661 SEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH----EFMEE 716
SE+ L +A ++ + L+ D R K+ ++S M +VG+ E +
Sbjct: 71 SEDMLTHARKRLPD------ATLHQGDMRDFRLGRKFSAVVS--MFSSVGYLKTTEELGA 122
Query: 717 FFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKE 755
L G++V++ E + + +S+D ++
Sbjct: 123 AVASFAEHLEPGGVVVVEPWW-FPETFADGWVSADVVRR 160
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 7e-12
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 6/121 (4%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
++E VLE G G G L +++ G GI S E A+ K+ +
Sbjct: 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPKE----- 90
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740
+ D+ D I+S + + LL + G +V D
Sbjct: 91 FSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD 150
Query: 741 E 741
+
Sbjct: 151 Q 151
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
++ + +LE+G G ++ T + SEE + +A+ ++K+
Sbjct: 33 MVRAFTPFFRPGNLLELGSFKGDFT-SRLQEHFNDITCVEASEEAISHAQGRLKDG---- 87
Query: 680 LIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739
I + +YD I+ ++E + + + + LAE G L F+ P
Sbjct: 88 -ITYIHSRFEDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRL---FLVCP 142
Query: 740 DERYNEYRL 748
+ ++
Sbjct: 143 NANAVSRQI 151
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 1e-11
Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 17/180 (9%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYE-KDDYLGGHAKTVTFDGVD----------LD 50
R+ ++GAGI+GLV+ +L +AG +V + E + +GG KT + +
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAE 105
Query: 51 LGFMVFNRVTYPNMMEFFESLGVDME---MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQK 107
G M +P + + LG+ D+ + ++
Sbjct: 106 AGAMRLP-SFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTN 164
Query: 108 KNVLNPYFWQMLR-EIIKFKDDVLGYLEELESNPD-IDRSETLGQFVNSRGYSELFQKAY 165
+ R + + ++P I+ L S++ +A
Sbjct: 165 GAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSDMVNQAL 224
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 27/127 (21%), Positives = 48/127 (37%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLRE 121
M + + +++ + G + F + + Q+
Sbjct: 169 NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN 228
Query: 122 IIKFKDD 128
++ K
Sbjct: 229 VLNNKPV 235
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-11
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL 685
+ VL+IGCG G +E+ K G + G+ ++E+ +K+ E K ++++
Sbjct: 38 YFKGCRRVLDIGCGRGEF-LELCKEEGIESIGVDINEDMIKFCEGKF------NVVKSDA 90
Query: 686 CDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERY 743
+Y + D ++ +E + E + E C S + +V I P+
Sbjct: 91 IEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV---IESPNPTS 145
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKY-TGITLSEEQLKYAEMKVKEAGLQDLIRLYL 685
V KG +L++G L I +++ C + + + A V E GL I + L
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 686 CD-YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734
+ +A+ D I C M G + + L LVLQ
Sbjct: 79 ANGLSAFEEADNIDTITICGM----GGRLIADILNNDIDKLQHVKTLVLQ 124
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 2e-11
Identities = 27/127 (21%), Positives = 48/127 (37%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 339
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLRE 121
M + + +++ + G + F + + Q+
Sbjct: 340 NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN 399
Query: 122 IIKFKDD 128
++ K
Sbjct: 400 VLNNKPV 406
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 5e-11
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683
+ K +L++ CG G + G+ LS + L A + + L
Sbjct: 45 RRHSPKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNPD------AVL 97
Query: 684 YLCDYRQLAKANKYDRIISCEMIEAVGH----EFMEEFFGCCESLLAEDGLLVLQFISIP 739
+ D R + ++ + M ++GH ++ + + DG++V++ P
Sbjct: 98 HHGDMRDFSLGRRFSAVTC--MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFP 155
Query: 740 DERYNEY 746
+ Y
Sbjct: 156 ENFTPGY 162
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 9e-11
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677
LL G +VLE GCG G + + K + T I +S E L+ A ++ G+
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI 86
Query: 678 QDLIRLYLCDYRQLA-KANKYDRIISCEMIE 707
++ ++ + L + + +D I C ++E
Sbjct: 87 KN-VKFLQANIFSLPFEDSSFDHIFVCFVLE 116
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Query: 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLY 684
+ G ++LE+GCG G A ++ G S E A ++
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRTM----- 92
Query: 685 LCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN 744
+ QL + YD + + + V + + + L GL + S E +
Sbjct: 93 --LFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD 150
Query: 745 EYR 747
+
Sbjct: 151 KLA 153
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 6/142 (4%)
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
S ++E +V K + L++GCG G ++ + G + + E L
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL- 79
Query: 679 DLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS- 737
D + + D L +YD I+S ++ + + + + G ++
Sbjct: 80 DNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139
Query: 738 ---IPDERYNEYRLSSDFIKEY 756
P + ++ Y
Sbjct: 140 TADYPCTVGFPFAFKEGELRRY 161
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Query: 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVK 673
+ R LL LEIGC G ++ + T I + + A + K
Sbjct: 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTK 94
Query: 674 EAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLV 732
I D Q + A +D I+ E++ + M +LA G LV
Sbjct: 95 RWS---HISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
Query: 733 L 733
Sbjct: 152 F 152
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-10
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 618 VSLLIEK-ARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKE 674
VS L+ +++K +++ GCG+G L + ++ G KYTGI E L A +
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
Query: 675 AGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707
D ++ +KYD I +
Sbjct: 70 LPYD--SEFLEGDATEIELNDKYDIAICHAFLL 100
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
+ + VL++GCG G L + R G + G+ + A + AG L
Sbjct: 52 QPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAA--RAAGAGEVHLASYAQLAE 108
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF---ISIPDERYNE 745
++ YD I + + H+ + E +LL G LV+Q S+ D Y +
Sbjct: 109 AKVPVGKDYDLICANFALL---HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD 165
Query: 746 Y 746
Sbjct: 166 G 166
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 3e-10
Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 23/214 (10%)
Query: 562 RHISRQNTLTQARRN--ISRHYDLSNELFSLFLDESMTYSCAVFKSED--EDLKAAQMRK 617
+ S + T A ++ D L + Y+ + + E+ A K
Sbjct: 643 EYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCLNYNILLLGVKGPSEERMEAAFFK 702
Query: 618 VSL-------LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC--KYTGITLSEEQLKYA 668
L ++ R S +++ GCG G+L ++ G+ +S + L A
Sbjct: 703 PPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA 762
Query: 669 EMKVKEAGLQDLIRLYLCDYRQLA------KANKYDRIISCEMIEAVGHEFMEEFFGCCE 722
+ ++ + + + + D E+IE + + EF
Sbjct: 763 AKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVL 822
Query: 723 SLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY 756
SL LL +S P+ +N S +
Sbjct: 823 SLFH-PKLL---IVSTPNYEFNTILQRSTPETQE 852
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV 47
++G+G+ G V A L K +V++ EK +++GG+A T +G+
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGI 48
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 7e-10
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 609 DLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYA 668
D + V L + + +++ CG GT + + + G+ +S+ L+ A
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIA 94
Query: 669 EMKVKEAGLQ-DLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEE----FFGCCES 723
+ A + L+ + + + D I H E
Sbjct: 95 AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF---HHIPVEKRELLGQSLRI 151
Query: 724 LLAEDGLLVLQFISIPDERY 743
LL + G + L + +
Sbjct: 152 LLGKQGAMYLIELGTGCIDF 171
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL- 680
I + + E+L+IGCG G +++E+ + G TGI ++ E ++ AE + GL
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 681 ---IRLYLCDYRQLA-KANKYDRIISCEMIEAVGH 711
+ + L+ + +D + + +V
Sbjct: 82 GGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPD 116
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 18/145 (12%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
+ L+ R VL++ CG G +I +V+ G T + S++ LKYA +
Sbjct: 46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRK 104
Query: 678 QDLIRL-------YLCDYRQLAKANKYDRIISCEMIEAVGH--------EFMEEFFGCCE 722
+ +L + + + +D +I + + H
Sbjct: 105 EPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC--LGNSFAHLPDSKGDQSEHRLALKNIA 162
Query: 723 SLLAEDGLLVLQFISIPDERYNEYR 747
S++ GLLV+ +
Sbjct: 163 SMVRPGGLLVIDHRNYDYILSTGCA 187
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 1e-09
Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 2/146 (1%)
Query: 606 EDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQL 665
D+ +++ L E + L+ G G G + ++ + + ++E+ L
Sbjct: 56 SSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL 115
Query: 666 KYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESL 724
A+ + E G + + C + + + YD I +I + + + EF C+
Sbjct: 116 VQAKTYLGEEGKRV-RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174
Query: 725 LAEDGLLVLQFISIPDERYNEYRLSS 750
L +G++V++ + + SS
Sbjct: 175 LRPNGIIVIKDNMAQEGVILDDVDSS 200
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
R+AV+G ISGL +A +L AGV+V +YE+ + ++ G + +
Sbjct: 6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERS------PQPLSGFGTGIVVQ-------- 51
Query: 61 YPNMMEFFESLGVDME 76
P ++ + GV+++
Sbjct: 52 -PELVHYLLEQGVELD 66
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 3e-09
Identities = 33/293 (11%), Positives = 93/293 (31%), Gaps = 20/293 (6%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--------GVDLDLGFM 54
V V+G G++ + + +++ G +V+ +++ Y GG + ++T ++ M
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68
Query: 55 VFNRVTYPNMME-FFESLGVDMEM---SDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNV 110
R +++ F + G ++M ++++ + + G + + + +
Sbjct: 69 GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128
Query: 111 LNPYFWQML--REIIKFKDDVLGYLEELESNPDIDRSE--TLGQFVNSRGYSELFQKAYL 166
L M R KF V + E + + ++ +
Sbjct: 129 LASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTG 188
Query: 167 IPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLE 226
+ + + ++ L +G+ +L + +
Sbjct: 189 HALA---LYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSA 245
Query: 227 SWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVM-ALHAPDALKILGN 278
+G + V ++ + V +G + + PD ++ G
Sbjct: 246 IYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQ 298
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 3e-09
Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 29/204 (14%)
Query: 575 RNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVL 634
R++ + E F FL+ S + C + + D+ L ++ ++L
Sbjct: 6 RSLFSDHGKYVESFRRFLNHSTEHQC-MQEFMDKKLPG-------IIGRIGDTKSEIKIL 57
Query: 635 EIGCGWGTLAIEIVK-------RTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL---- 683
IG G G + ++I+ + S EQ+ + V + + ++
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 684 -----YLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738
Y + + K+D I +M+ V + SLL + + I +
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKM---LIIV 172
Query: 739 PDERYNEYRLSSDFIKEYIFPGGC 762
+L + + C
Sbjct: 173 VSGSSGWDKLWKKYGSRFPQDDLC 196
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLY 684
A +G ++L+ GCG G + + K+ G G L + YA+ E R
Sbjct: 42 AMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFPE------ARWV 94
Query: 685 LCDYRQLA-KANKYDRIISCE-MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER 742
+ D +D I+S ++ + + E L DG V+ F +
Sbjct: 95 VGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWV 154
Query: 743 YNEYR 747
+ ++
Sbjct: 155 FGDFL 159
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 4e-09
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 2/121 (1%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
L++ + + G+ L GCG G + + G+ +SE L A + +
Sbjct: 59 LVDTSSLPLGR-ALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEY 116
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740
D +D I A+ E + LL DG L+ I D
Sbjct: 117 FSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITD 176
Query: 741 E 741
Sbjct: 177 H 177
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-09
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689
L+ G G G + ++ + + + L+ A+ +E + + L
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK---RELAGMPVGKFILASME 150
Query: 690 QLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN 744
N YD I+ + +FF C+ L +G + + +R+
Sbjct: 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL 206
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-09
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+AV+GAG +GL A A G +V L++ +GG
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 576 NISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLE 635
+ + +D S E ++ E + + R + + V K EVL+
Sbjct: 15 SAEKKWDSSAEFWNQNSQE---------------MWDSGSRSTIIPFFEQYVKKEAEVLD 59
Query: 636 IGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
+GCG G ++ + G K G+ +SE ++ + + + L
Sbjct: 60 VGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGEGPDLS 101
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 7e-09
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG 46
++GAG +G V A LA +G V++ ++ ++GG+A D
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDA 75
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 9e-09
Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 15/187 (8%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
L + +VLE+ G G + + T + S E + A GL +
Sbjct: 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEA----GRHGLDN 91
Query: 680 LIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739
+ D ++D + + V + E F+ S +A G++ ++
Sbjct: 92 -VEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150
Query: 740 DERYNEYRLS--SDFIKEYIFPGG------CLPSLSRITSAMSVASRLCVEQVENIGIHY 791
+ R + S ++ + G S + +T ++ E
Sbjct: 151 ERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALG-WSCSVDEVHPGFL 209
Query: 792 YQTLRCW 798
Y T R
Sbjct: 210 YATCRPG 216
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
RV V+GAG SGL +A L G +VVL E LGG
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR 429
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V ++GAG SG +A VL ++G V L + + +GG
Sbjct: 391 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG 426
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
L+ A ++L + G G A + G + T + S L A+ +E G++
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK-- 77
Query: 681 IRLYLCDYRQL-AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739
I + A+ ++ I+S + ++ + L G+ +L+ +
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135
Query: 740 DERYN 744
+YN
Sbjct: 136 QLQYN 140
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 16/74 (21%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
M+ VIGAGI GL +A L ++G++ +YE K + G + +
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEA-------VKEIKPVGAAISVW-------- 68
Query: 61 YPNMMEFFESLGVD 74
PN ++ LG+
Sbjct: 69 -PNGVKCMAHLGMG 81
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 3 VAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR-VT 60
V V+GAG +GL +AY ++K V+V + E+ GG A LG +F+ +
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW----------LGGQLFSAMIV 91
Query: 61 YPNMMEFFESLGVDMEMSD 79
F + +GV + D
Sbjct: 92 RKPAHLFLDEIGVAYDEQD 110
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 14/171 (8%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA---KTVTFDGVDLDLGFMVFNRV 59
+ ++GAG SG V LA+ G +V + ++ D++GG++ + + + G +F+
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH-T 64
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
+ + M + + G + N
Sbjct: 65 DNETVWNYVNKHAEMMPYVNRVKATV--NGQVFSL-------PINLHTINQFFSKTCSPD 115
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPIC 170
+ + + ++ + +G+ + + K + +
Sbjct: 116 EARALIAEKGDSTIADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPS 165
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 30/202 (14%), Positives = 68/202 (33%), Gaps = 18/202 (8%)
Query: 561 FRHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSL 620
+ + + + I HY+ E S T + ++ + +K +
Sbjct: 7 LKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTIN---IRNANNFIK-------AC 56
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
LI +G VL++GCG G ++ + +Y G+ ++E + A ++ + +
Sbjct: 57 LIRLY-TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 115
Query: 681 IRLYLCDY--RQLAKANKYDRIISCEMIEAV--GHEFMEEFFGCCESLLAEDGLLVLQFI 736
+ D R + ++D I S E ++ L G + +
Sbjct: 116 VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI---M 172
Query: 737 SIPDERYNEYRLSSDFIKEYIF 758
++P R + +
Sbjct: 173 TVPSRDVILERYKQGRMSNDFY 194
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 96/589 (16%), Positives = 168/589 (28%), Gaps = 171/589 (29%)
Query: 288 LGAFQYVYSDIFLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFL 347
G QY Y DI F F+++FD K ++L + +
Sbjct: 11 TGEHQYQYKDILSV----FED---------AFVDNFDCKDVQDMPKSILSK---EEIDHI 54
Query: 348 VTLNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLK 407
+ D V L W +L + + + F E+ L+
Sbjct: 55 IMS-KDAVSGTLRLFW--------------TLLS---KQEEMV--------QKFVEEVLR 88
Query: 408 AGMTAAHGVLGKSCTLSSNPRHMIPSLKETGARLFVARFLGQYISTGSMILLEEGGTIFT 467
+ L + + R PS+ YI L +F
Sbjct: 89 IN----YKFLMSP--IKTEQRQ--PSMMTR-----------MYIEQRDR--LYNDNQVFA 127
Query: 468 -FEGTRKNCH--LKTVLRIHSPQFYWKVMTQADLG-----LADAYINGDFSFVDKDEGLL 519
+ +R + L+ L P V+ LG +A + K +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGSGKTWVALDVCL-SYKVQCKMDF-- 182
Query: 520 NLFMILIANRDLDSSVSKLKQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISR 579
+F + + N + +V ++ QK + + + + R +++ R + +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 580 HYDLSNELFSLFLD--------ESMTYSCAV-----FKSEDEDLKAAQMRKVSLLIEKAR 626
N L L L + SC + FK + L AA +SL
Sbjct: 240 SKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686
++ EV + L K C+ L E L ++ + IR L
Sbjct: 298 LTPD-EVKSL------LL----KYLDCRPQ--DLPREVLTTNPRRLSIIA--ESIRDGLA 342
Query: 687 --DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN 744
D + +K II E L VL+ P E
Sbjct: 343 TWDNWKHVNCDKLTTII-------------------------ESSLNVLE----PAEYRK 373
Query: 745 EYRLSSDFIKEYIFPGGC-LPS--LSRITSAMS-----------VASRLCVEQVEN--IG 788
+ +FP +P+ LS I + L +Q + I
Sbjct: 374 MFD---RLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 789 IH-YYQTLRCWRKNFMEKQSKILA-----LGF-NDKFIRTWE--YYFDY 828
I Y L+ +N I+ F +D I + Y++ +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 5e-08
Identities = 73/603 (12%), Positives = 156/603 (25%), Gaps = 185/603 (30%)
Query: 268 HAPDALKILGNQATFDETRILGAFQ-----YVYSDIFLHRDKRFMPQNPAAWSAWNFLES 322
D K + ++ D I+ + L + + + + F+E
Sbjct: 37 DVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQK---------FVEE 85
Query: 323 FDSKVCLTY-WL-NVLQNLGETSLPFLVTLNPDHVPEHTLLKWSTGHPVP--SVAASKAS 378
Y +L + ++ E P ++T ++ + L ++ +V+ +
Sbjct: 86 VLRI---NYKFLMSPIKT--EQRQPSMMTRM--YIEQRDRL-YNDNQVFAKYNVSRLQPY 137
Query: 379 LEL-DHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCTLSSNPRHMIPSLKET 437
L+L + R + G+ + GK+ ++ +
Sbjct: 138 LKLRQALLELR------PAKNVLID------GVLGS----GKTW-VALD----------- 169
Query: 438 GARLFVARFLGQYISTGSMILLEEGGTIF--TFEGTRKNCHLKTVLRIHSPQFYWKVMTQ 495
V + + IF KNC+ + Q +
Sbjct: 170 -----VCLSYK--------VQCKMDFKIFWLNL----KNCN-SPETVLEMLQKLLYQIDP 211
Query: 496 ADLGLADAYINGDFSFVDKDEGLLNLFM-------ILIANRDLDSSVSKLKQKRGWWSPM 548
+D N L L +L+ L + V +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLN-V---------QNAK 257
Query: 549 LFTAGIASAKYFFRH------ISRQNTLTQARRNISR-HYDLSNELFSLFLDESMTYSCA 601
+ A F +R +T + H L + +L DE +
Sbjct: 258 AWNA--------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 602 VFKSEDEDLKAAQMRKVS-LLIE--KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGI 658
+DL ++ + + + G + W + + + I
Sbjct: 310 YLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTI------I 359
Query: 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIIS--------CEMIEAVG 710
S L+ AE + ++ + +L+ I ++I++
Sbjct: 360 ESSLNVLEPAEYR----------KM----FDRLSVFPP-SAHIPTILLSLIWFDVIKSDV 404
Query: 711 HEFMEEFFGCCESLLAEDGLLVLQFISIPD-------ERYNEYRLSSDFIKEYIFPGG-C 762
+ + SL+ + ISIP + NEY L + Y P
Sbjct: 405 MVVVNKL--HKYSLVEKQPKEST--ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 763 LPSLSRITSAMSVASRLCVEQVEN-----IGIHYYQTLRCWRKNFMEKQSKILALGFNDK 817
L ++ IG H R + + +
Sbjct: 461 SDDLI-------------PPYLDQYFYSHIGHHLKNIEHPERMTLFRM------VFLDFR 501
Query: 818 FIR 820
F+
Sbjct: 502 FLE 504
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 6e-07
Identities = 103/691 (14%), Positives = 183/691 (26%), Gaps = 226/691 (32%)
Query: 47 VDLDLGFMVFNRVTYPNMME-FFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSS--- 102
+D + G + Y +++ F ++ + + D+ ++ LS
Sbjct: 7 MDFETGEH---QYQYKDILSVFEDAFVDNFDCKDVQDMP------------KSILSKEEI 51
Query: 103 --LFAQKKNVLNPY--FWQMLR---EIIK-FKDDVL----GYLEELESNPDIDRSETLGQ 150
+ K V FW +L E+++ F ++VL +L S
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 151 FVNSR----GYSELFQKAYLIPICGSIWSC--------PSEGVTSF----SAFSVL--SF 192
++ R +++F K Y + P++ V S + +
Sbjct: 112 YIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 193 CRNHHLLQLFGRP-QWLTV----------------------------------RWRSHSY 217
C ++ + WL + + R HS
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 218 VNKVRKQLES-------------W----------GCQI----RTSSEVCSVLPADKGCTI 250
++R+ L+S C+I R V L A I
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHI 289
Query: 251 VCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFLHRDKRFMPQN 310
S V +L K L + +L S I +
Sbjct: 290 SLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSII-----AESIRDG 340
Query: 311 PAAWSAWN--FLESFDSKVCLTYWLNVLQNLGETSLPF--LVTLNPD-HVPEHTL-LKWS 364
A W W + + + + LNVL+ E F L P H+P L L W
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS--LNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 365 TGHP--VPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKA---GMTAAHGVLGK 419
V V L Q K + + LK A H
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKEST-----ISIPSIYLE-LKVKLENEYALH----- 446
Query: 420 SCTLSSNPRHMIPSLKETGARLFVARF-LGQYISTGSMILLEEGGTIFTFEGTRKNCHLK 478
R V + + + + +I ++ G HLK
Sbjct: 447 --------------------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLK 482
Query: 479 TVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKL 538
+ + V ++ DF F+++ K+
Sbjct: 483 NIEHPERMTLFRMV-----------FL--DFRFLEQ----------------------KI 507
Query: 539 KQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQAR---RNISRHYDLSNELFSLFLDES 595
+ W+ + I NTL Q + I + L + LD
Sbjct: 508 RHDSTAWNA---SGSIL------------NTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 596 MTYSCAVFKSEDEDL-KAAQMRKVSLLIEKA 625
+ S+ DL + A M + + E+A
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 59/174 (33%)
Query: 13 LVSAYVLAKAGVEVVLYEKDD------------YLGGHAKTVTFDGVDLDLGFMVFNRVT 60
+V Y + K ++ DD ++G H K + + +F V
Sbjct: 449 IVDHYNIPKT------FDSDDLIPPYLDQYFYSHIGHHLKNI-----EHPERMTLFRMV- 496
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLE---KGHGCEWGSRNGLSSLFAQKKNVLN----- 112
F D F LE + W + + + Q K
Sbjct: 497 ------FL----------DFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 113 -PYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAY 165
P + +++ I+ F L ++E N + L + +F++A+
Sbjct: 538 DPKYERLVNAILDF-------LPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 2e-08
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVT-FDGVDLDLG 52
+V +IGAGI+GL +A L + G+ + ++ E D +GG +TVT + G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 17/123 (13%)
Query: 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVK 673
+ + + K +++ GCG G +++ K I ++ LK + K
Sbjct: 2 SLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD 60
Query: 674 EA-GLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEF--MEEFFGCCESLLAEDGL 730
L D + N D I+ H+ + + +L +DG
Sbjct: 61 SVITLSDPKEI---------PDNSVDFILFANSF----HDMDDKQHVISEVKRILKDDGR 107
Query: 731 LVL 733
+++
Sbjct: 108 VII 110
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
+ VL++GCG+G I + K GI LSE L A K ++
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA----KRKTTSPVVCYEQKAI 99
Query: 689 RQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+A + + Y+ ++S + + ++ L G +
Sbjct: 100 EDIAIEPDAYNVVLSSLALHYIAS--FDDICKKVYINLKSSGSFIF 143
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V VIGAG +GL +A L G EV +Y++ D +GG
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
R V G G +GL +A L + G +V L+EK L G + L
Sbjct: 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR-------AFGAGIYLW-------- 56
Query: 61 YPNMMEFFESLGVDMEMSDMSF 82
N + E LG ++ S
Sbjct: 57 -HNGLRVLEGLGALDDVLQGSH 77
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDL----GFMVFN 57
VA+IG G GL A +L + G++V +YE+D+ + G LDL G
Sbjct: 28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN-----DREARIFGGTLDLHKGSGQEAMK 82
Query: 58 RVTYPNMMEFFESLGVDMEM 77
+ +++ + L + M +
Sbjct: 83 KA---GLLQTYYDLALPMGV 99
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 17/133 (12%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
LIE +L++G G G + G + G+ + ++ A
Sbjct: 33 LIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHPS------ 85
Query: 681 IRLYLCDYRQLAKA-NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739
+ + L+ + ++ +++ + +G + + + + G L++ F S P
Sbjct: 86 VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145
Query: 740 DERYNEYRLSSDF 752
+ +++ +
Sbjct: 146 SLEPMYHPVATAY 158
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 5e-08
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 620 LLIEKARVS-KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
LL + + + + +++++ G G + + + RT K G+ + E A+ V L+
Sbjct: 39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE 98
Query: 679 DLIRLYLCDYRQLA---KANKYDRIIS---------------CEMIEAVGHE---FMEEF 717
D I + D +++ + D + E HE +E+
Sbjct: 99 DQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDT 158
Query: 718 FGCCESLLAEDGLLVLQFISIPDERYNE 745
SLL + G ER +
Sbjct: 159 IRVAASLLKQGGKA---NFVHRPERLLD 183
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
L++ A K +++GCG G + +E+ + I + E + EM ++ GL D
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLEL-AGRVRRVYAIDRNPEAISTTEMNLQRHGLGD 82
Query: 680 LIRLYLCD-YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738
+ L D L K D + + G E ++E + L G +++ I +
Sbjct: 83 NVTLMEGDAPEALCKIPDIDIAV----VGGSGGE-LQEILRIIKDKLKPGGRIIVTAILL 137
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLGG 37
++A+IGAG SGLV+A L +V L+E+ GG
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+ VIGAG++G+ A+++ +AG++V+ E + +GG
Sbjct: 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 31/132 (23%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY----LGGHAKTVTFDGVDLDLGFMVFNR 58
V VIGAG +G V+A ++ K+G +V + EK + +G
Sbjct: 8 VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES-------------------- 47
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQM 118
P ME + G + F +K + F+ + + + WQ+
Sbjct: 48 -LLPRCMEHLDEAGFLDAVKAQGF---QQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQV 103
Query: 119 LREIIKFKDDVL 130
R D L
Sbjct: 104 PRGNF---DKTL 112
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
VIG GI G AY LAK L+E +GG
Sbjct: 19 EAVVIGGGIIGSAIAYYLAKENKNTALFES-GTMGGRT 55
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+ V V+GAG SGL + Y L + G V + E +GG
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V V+GAGI+GL + + G+ V +E +GG
Sbjct: 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
G ++++GCG+G + G+ LSE+ L A + AG I D
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA----RAAGPDTGITYERADL 98
Query: 689 RQLAKA-NKYDRIISCEMIE 707
+L + +D S +
Sbjct: 99 DKLHLPQDSFDLAYSSLALH 118
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
L++ G+ +L++GCG G L +I + G + G + ++ A
Sbjct: 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNYPH------ 101
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735
+ + D R D + S M+ V E L G V +F
Sbjct: 102 LHFDVADARNFRVDKPLDAVFSNAMLHWVKE--PEAAIASIHQALKSGGRFVAEF 154
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV------DLDLGFM-- 54
V +IG G +G +AY L++ G++++L + + K D V L + +
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCG-DAVSKAHFDKLGMPYPKG 67
Query: 55 --VFNRVT 60
+ N++
Sbjct: 68 EELENKIN 75
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 5e-07
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 3 VAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
+ ++GAG GL +AYVL+ + + + E GG A G + V
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA---------WLGGQLFSAMVM 132
Query: 61 YPNMMEFFESLGVDME 76
F + +GV E
Sbjct: 133 RKPADVFLDEVGVPYE 148
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 6e-07
Identities = 28/288 (9%), Positives = 81/288 (28%), Gaps = 35/288 (12%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV--------------- 47
V ++G G+ + + +L+ G ++++ +++ Y GG ++ +
Sbjct: 23 VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYG 82
Query: 48 -----DLDLGFMVFNRVTYPNMMEFFESLGVD--MEMSDMSFSVSLEKGHGCEWGSRNGL 100
++DL + N+++ + V +E + S + S +
Sbjct: 83 ENRHWNVDLIPKFI--LVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFI 140
Query: 101 SSLFAQKKNVLNPYFWQML--REIIKFKDDVLGYLEELESNPDI--DRSETLGQFVNSRG 156
+ A L ++ F V + + D T+ +
Sbjct: 141 HKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFN 200
Query: 157 YSELFQK--AYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRS 214
+L + + + + + + + ++ + FG+ ++ +
Sbjct: 201 LCQLTIDFLGHAVALYLN-----DDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGL 255
Query: 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNS 262
+ G + V + D E
Sbjct: 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYC 303
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
+ V VIG G SGL + Y L ++G+ V+ + + GG
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
+L+E V K ++L++GCG+G + I + T ++ +K A+ +K L +
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDN 101
Query: 680 L-IRLYLCDYRQLAKANKYDRIISCEMIEA-----VGHEFMEEFFGCCESLLAEDGLLVL 733
IR+ D + K KY++II+ G E + + LL ++G + +
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIIT------NPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 7e-07
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 3 VAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
V ++GAG SGL +AYV+AK ++V + E GG + G + V
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG---------GQLFSAMVM 118
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSR 97
F + L + E V S+
Sbjct: 119 RKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSK 155
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 10/156 (6%)
Query: 622 IEKARVS-KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
I + K + VL++GCG G L+ + G + + ++AE+ VK L D
Sbjct: 42 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 100
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVG-HEFMEEFFGCCESLLAEDGLLV-----LQ 734
I + +++ + D IIS E + + +E M E + + L G + +
Sbjct: 101 IVVIPGKVEEVSLPEQVDIIIS-EPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVH 159
Query: 735 FISIPDER-YNEYRLSSDFIKEYIFPGGCLPSLSRI 769
DE+ Y E ++F + F G L +L
Sbjct: 160 LAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGA 195
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGG 37
++A++GAG + + A LA+ G ++ ++EK +Y+GG
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 2 RVAVIGAGISGLVSAYVLAKA--------GVEVVLYEKDDYLGGHAKT-VTFDGVDLDLG 52
R+A++G G G+ + Y L + G++V +YE D H + + V
Sbjct: 58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKA 117
Query: 53 FMVFNRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLN 112
V S E+ M F G W + A K N
Sbjct: 118 GRVS---AALVHNGDPASGDTIYEVGAMRFPEI----AGLTWHYASAAFGDAAPIKVFPN 170
Query: 113 P 113
P
Sbjct: 171 P 171
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK----DDYLGGHAKT-------VTFDGVDL 49
MRV VIGAG+ GL +A + + V+ D T +
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPN 60
Query: 50 DLGFMVFNRVTYPNMMEFFES 70
+ +++ T+ ++ S
Sbjct: 61 NPQEADWSQQTFDYLLSHVHS 81
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 27/123 (21%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY----LGGHAKTVTFDGVDLDLGFMVFNR 58
+ VIG G G A +A G V+L E++ + +G
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGES-------------------- 49
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSL-FAQKKNVLNPYFWQ 117
+ + LG+ EM F + +G WG + F + + + +Q
Sbjct: 50 LLPATVHGICAMLGLTDEMKRAGFPIK--RGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQ 107
Query: 118 MLR 120
+ R
Sbjct: 108 VER 110
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 15/117 (12%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTL-AIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG 676
+ R +G+ + IG G L I + G + + + + + + ++ G
Sbjct: 111 LKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG 170
Query: 677 LQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+ D + + D + ++D + + A E F + + ++
Sbjct: 171 V-DGVNVITGDETVIDGL-EFDVL-----MVAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 10/156 (6%)
Query: 622 IEKARVS-KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
I + K + VL++GCG G L+ + G + + ++AE+ VK L D
Sbjct: 150 ILQNHTDFKDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDR 208
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVG-HEFMEEFFGCCESLLAEDGLLVLQFISI- 738
I + +++ + D IIS E + + +E M E + + L G + +
Sbjct: 209 IVVIPGKVEEVSLPEQVDIIIS-EPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVH 267
Query: 739 -----PDERYNEYRLSSDFIKEYIFPGGCLPSLSRI 769
++ Y E ++F + F G L +L
Sbjct: 268 LAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGA 303
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 1 MR--VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV 47
M+ + +IG+G G + Y +AG+ V++ + H
Sbjct: 1 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM--PPHQHGSHHGDT 47
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35
VA+IG G +G V+ L K G +V +YE+ +
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP 58
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32
RV V+G+G+ GL SA +LA+ G V + +D
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARD 38
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
+ L+I+ A VL+IG G G A+ + G+ ++E ++ A +E G+
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV 68
Query: 678 QDL 680
+++
Sbjct: 69 ENV 71
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 2e-06
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAG---VEVVLYEKDDYLGGHAKTVTFDG 46
+V ++GAG++G + A +L + + + +++K D GG T
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPH 50
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
+ + + GAGI GL A L +AG+ +V L E + + GV +++
Sbjct: 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLES-------SSEIRPLGVGINIQ------- 50
Query: 60 TYPNMMEFFESLGVD 74
P +E LG+
Sbjct: 51 --PAAVEALAELGLG 63
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 1 MRVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLD 50
M++ VIGAG +GLV A L +A + + EK+D V G
Sbjct: 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQ 52
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGV 47
V V+GAG G+ + Y LAK GV+ +L + D H
Sbjct: 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP--PHTNGSHHGDT 48
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVD 48
V V+GAG +GL +A +++G V+L ++ GG + +D
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQID 176
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 17/135 (12%)
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686
+ +L +GCG L+ E+ T + S + + +R
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETM 96
Query: 687 DYRQLA-KANKYDRIISCEMIEAV-------------GHEFMEEFFGCCESLLAEDGLLV 732
D R+L + +D ++ ++A+ G +++ +L G +
Sbjct: 97 DVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156
Query: 733 LQFISIPDERYNEYR 747
+ P R Y
Sbjct: 157 SMTSAAPHFRTRHYA 171
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
VIGAG+ GL A LA G EV++ E + +G
Sbjct: 7 CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGT 43
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-06
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MRVAVIGAGISGLVSAYVLA-KAGVEVVLYEKDDYLGGHAKTVTFD 45
+ V+G+G GL A +A + V++ E+ ++GG+A +
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEP 53
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 620 LLIEKA----RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675
L+E A R + V +IG G G + + + K + +S + ++ A +
Sbjct: 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH 169
Query: 676 GLQDLIRLYLCDYRQ--LAKANKYDRIIS 702
G+ D + ++ + K + I+S
Sbjct: 170 GVSDRFFVRKGEFLEPFKEKFASIEMILS 198
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG----GHA 39
+ VIG GI G+ A+ LAK G EV + EK ++G
Sbjct: 7 EIVVIGGGIVGVTIAHELAKRGEEVTVIEK-RFIGSGSTFRC 47
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC--KYTGITLSEEQLKYAEMKVKEAGLQ 678
++++ + +G VL++G G G + K G K I + EE + YA KV + GL+
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 679 DLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDG-LLVLQ 734
+ + + + ++ N D I + +F+EE + L ++
Sbjct: 89 N-VEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELK----RVAKPFAYLAIID 143
Query: 735 FISI-------PDERYNEYRL 748
+ P+E Y+E+ +
Sbjct: 144 WKKEERDKGPPPEEVYSEWEV 164
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 20/81 (24%)
Query: 1 MR--VAVIGAGISGLVSAYVLAKAGVEVVLYEK--DDYLGGHAKTVTFDGVDLDLGFMVF 56
M+ VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + +
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLE----------- 49
Query: 57 NRVTYPNMMEFFESLGVDMEM 77
M++ GVD M
Sbjct: 50 -----QGMVDLLREAGVDRRM 65
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
V V+G G GL +A+ +A+ G V++ E+
Sbjct: 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHT-FFNEN 42
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37
V V G GI+G+ ++ A+AG +V++ E+ GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 2 RVAVIGAGISGLVSAYVLAKA------GVEVVLYEKDDYLGG 37
R+A++GAG SG+ A E+V +EK GG
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG 45
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
VIGAGI+G + Y L+ G VVL E++ G H+
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVL-EREAQPGYHS 47
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 7e-06
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK---DDYLGG 37
R+ ++GAG +GL L + V+V +Y D+Y G
Sbjct: 24 RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGL 62
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
V V+GAG +G ++ KAG V+L +K + GG+
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 159
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVK-RTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
+ K + G+ LEIG G + + + CK T + EE +YA ++
Sbjct: 46 YIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN 105
Query: 679 DLIRLYLCDYRQLAKANKYDRIIS 702
+ + +D I S
Sbjct: 106 VRLVKSNGGIIKGVVEGTFDVIFS 129
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
L + +G+ + +IG G G++++E G + I ++++ + + GL
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWC-LAGGRAITIEPRADRIENIQKNIDTYGLSP 104
Query: 680 LIRLYLCD-YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738
+R LA + + +G + + LA +V +++
Sbjct: 105 RMRAVQGTAPAALADLPLPEAVF-------IGGGGSQALYDRLWEWLAPGTRIVANAVTL 157
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
L++ A + +EVL++ G G +A K L+E+ LK A ++ G Q +
Sbjct: 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQV 87
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
V +IG+G +GL +A AG +V+L EK+ GG+
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 164
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEA 675
S +I + + G ++LE+G G G ++ I+ T + E+ LK A + E
Sbjct: 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 158
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRII 701
+R D YD +I
Sbjct: 159 YDIGNVRTSRSDIADFISDQMYDAVI 184
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 27/216 (12%), Positives = 68/216 (31%), Gaps = 31/216 (14%)
Query: 528 NRDLDSSVSKLKQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNEL 587
RD+ +S +L +K P T A+ + + + +
Sbjct: 138 ARDIHTSTLELFEK--VLGPTTTTLAWKKARLINCTFNEPQLADAPQTVSWKLEGTDWTI 195
Query: 588 FSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEI 647
+ VF S A+ ++ + E++++GCG G + + +
Sbjct: 196 HNH---------ANVF-SRTGLDIGAR-----FFMQHLPENLEGEIVDLGCGNGVIGLTL 240
Query: 648 VKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDL--IRLYLCDYRQLAKANKYDRIIS-- 702
+ + K + S + + + V+ + L + + + +++ ++
Sbjct: 241 LDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300
Query: 703 -----CEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+ + V E C L +G L +
Sbjct: 301 PFHQQHALTDNVAWEMFHHARRC----LKINGELYI 332
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 38/268 (14%), Positives = 93/268 (34%), Gaps = 22/268 (8%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V V+G GI+ + + +L+ G +V+ +K D+ GG A +VT + ++
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 73
Query: 63 NMMEFFESLGVD---------------MEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQK 107
+ VD + +D++ V ++ G + + + A +
Sbjct: 74 SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANE 133
Query: 108 KNVLNPYFWQML--REIIKFKDDVLGYLE-ELESNPDIDRSE-TLGQFVNSRGYSELFQK 163
++ + R + KF + + Y E +L ++ +D + T+ + G ++
Sbjct: 134 IEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE 193
Query: 164 AYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRK 223
+ + S +L +C++ + +G+ +L + +
Sbjct: 194 FIGHAMALWTNDDYLQQPARPSFERILLYCQS---VARYGKSPYLYPMYGLGELPQGFAR 250
Query: 224 QLESWGCQIRTSSEVCSVLPADKGCTIV 251
+G + + VL
Sbjct: 251 LSAIYGGTYMLDTPIDEVLYKKDTGKFE 278
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
V V+G+G +G +A +G +V+L EK+ +GG+
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 164
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
++ VLE GCG G A + ++ S E LK A A +
Sbjct: 44 RLLTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADV 95
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 23/159 (14%)
Query: 607 DEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLK 666
+ + +S L + +EIG G G A+ + + G+ SE +
Sbjct: 25 ERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAE 79
Query: 667 YAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGH--EFMEEFFGCCES 723
A + + + L K +D + I V ++E +
Sbjct: 80 IARKRG--------VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAY----R 127
Query: 724 LLAEDGLLVLQFI---SIPDERYNEYRLSSDFIKEYIFP 759
+L + G L++ + S Y + + S F K F
Sbjct: 128 ILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF 166
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHA 39
V+GAG+ GL +AY L V++ + G
Sbjct: 25 DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD 63
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1 MRVAVIGAGISGLVSAYVL-AKAGVEVVLYEKDDYLGG 37
+ VIGAG G+ + + L + G+ V ++K D GG
Sbjct: 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V V+GAG+ GL +A LA+ GV V++ E+ L + + + R
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNP-----------RT--- 53
Query: 63 NMMEFFESLGV 73
ME GV
Sbjct: 54 --MELLRIGGV 62
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 16/75 (21%), Positives = 28/75 (37%)
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686
+ V+++ G G L++ I K I K+ + ++D + Y
Sbjct: 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182
Query: 687 DYRQLAKANKYDRII 701
D R N DRI+
Sbjct: 183 DNRDFPGENIADRIL 197
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 612 AAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEM 670
+ R L+ + + + ++GCG G + R G TGI ++ L+ A
Sbjct: 16 DERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAAD 75
Query: 671 KVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGL 730
++ D A K D + + + + V L G+
Sbjct: 76 RLPN------TNFGKADLATWKPAQKADLLYANAVFQWVPD--HLAVLSQLMDQLESGGV 127
Query: 731 LVLQF 735
L +Q
Sbjct: 128 LAVQM 132
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V V+GAG +GL+ A L GV+V++ E+ G ++ + F R
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTA-----------RT--- 60
Query: 63 NMMEFFESLGV 73
ME F+ G+
Sbjct: 61 --MEVFDQRGI 69
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V V+GAG +G++ A L AGVEVV+ E+ G ++ + F R
Sbjct: 14 VIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTA-----------RT--- 59
Query: 63 NMMEFFESLGV 73
ME F+ G+
Sbjct: 60 --MEVFDQRGI 68
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 8e-05
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 11/143 (7%)
Query: 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLI 681
K V +G V++ CG G + G + G + ++ + K+ + L D +
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 682 RLYLCDYRQLAKANKYDR---IISCEMIEAVGHEFME------EFFGCCESLLAEDGLLV 732
L ++ + K + + + + H + LL G++
Sbjct: 77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
Query: 733 LQFISIPDERYNEYRLSSDFIKE 755
+ D + E +F+K
Sbjct: 137 VVIYYGGDTGFEEKEKVLEFLKG 159
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGL 677
+ +G VL++GCG G K G K G+ + + QL+ A V+
Sbjct: 74 STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133
Query: 678 QDL-------IRLYLCDYRQLAKA-------NKYDRIISCEMI 706
+ +R LA A + D +IS +
Sbjct: 134 KFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVC 176
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 31/149 (20%)
Query: 625 ARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEA---GLQDL 680
+ + ++G G G + + R + T S+E ++A ++
Sbjct: 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSAR 91
Query: 681 IRLYLCDYRQLAKAN--------KYDRIIS-------------CEMIEAVGHEF---MEE 716
I + D AKA + +I + E+
Sbjct: 92 IEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFED 151
Query: 717 FFGCCESLLAEDGLLVLQFISIPDERYNE 745
+ +++ G L + + E
Sbjct: 152 WIRTASAIMVSGGQL---SLISRPQSVAE 177
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 1e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKY-TGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
+G++VL++GC G L + I + G G+ + + A ++ ++ +RL
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE-LRLPPQT 104
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735
A + + + DG F
Sbjct: 105 LEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVF 152
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
+ + LE+G G G +A+ ++ R G +Y + L+ K+ +
Sbjct: 30 MASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAGVDRK- 87
Query: 680 LIRLYLCDYRQL 691
+++ D R +
Sbjct: 88 -VQVVQADARAI 98
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
+ + +G+ VL++G G G LAI + G + + + +A VK L +
Sbjct: 55 VFQNKHHFEGKTVLDVGTGSGILAIWSA-QAGARKVYAVEATKMADHARALVKANNLDHI 113
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740
+ + ++ K D IIS E +G+ + E + A D L + P
Sbjct: 114 VEVIEGSVEDISLPEKVDVIIS----EWMGYFLLRESM-FDSVISARDRWLKPTGVMYPS 168
Query: 741 E 741
Sbjct: 169 H 169
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH--AKTVTFDGVD 48
VA+IG G +G+ +A L + V L E+ +LGG K + +G +
Sbjct: 111 VAIIGGGPAGIGAALELQQYL-TVALIEERGWLGGDMWLKGIKQEGFN 157
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEI-VKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
++ + K R+ + +IG G +++IE + + + + L + +K+
Sbjct: 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA 89
Query: 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
+++ + L DR+ I G +EE + L +G++VL ++
Sbjct: 90 RNVTLVEAFAPEGLDDLPDPDRVF----IGGSGGM-LEEIIDAVDRRLKSEGVIVLNAVT 144
Query: 738 I 738
+
Sbjct: 145 L 145
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 2e-04
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 4/142 (2%)
Query: 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT---GCKYTGITLSEEQLKYAEM 670
+ ++ + V+ V ++GC G + + K GI S+ ++
Sbjct: 43 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 102
Query: 671 KVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGL 730
+ + + + D R + N +I ++ + E L +G+
Sbjct: 103 HIAAYHSEIPVEILCNDIRHVEIKN-ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV 161
Query: 731 LVLQFISIPDERYNEYRLSSDF 752
LVL ++ + L
Sbjct: 162 LVLSEKFRFEDTKINHLLIDLH 183
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V ++G G G+ A LA V ++ E+ D H + T R
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGP-----------RS--- 74
Query: 63 NMMEFFESLGV 73
ME F GV
Sbjct: 75 --MELFRRWGV 83
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIE-IVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
+IE A + G VL+ CG GT+ IE ++R + GI + L AEM AG+ D
Sbjct: 210 MIELAEL-DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLD 268
Query: 680 LIRLYLCDYRQLAK-ANKYDRIIS 702
I+ D QL++ + D IS
Sbjct: 269 KIKFIQGDATQLSQYVDSVDFAIS 292
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 39/98 (39%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEK-------------------------DDYLGG 37
+IGAG +GL A LAK G V +++ YL
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66
Query: 38 HAKTVTFDGVDLDLGFM--VFNRVTYPNMMEFFESLGV 73
+ F+ R T + + G+
Sbjct: 67 NPH------------FVKSALARYTNWDFISLVAEQGI 92
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 2 RVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHA 39
++G G GL +AY LAK V + EK +L G
Sbjct: 23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEK-GWLAGGN 61
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 39/98 (39%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEK-------------------------DDYLGG 37
V +IGAG +G++ A K G V++ + ++L G
Sbjct: 30 VVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSG 89
Query: 38 HAKTVTFDGVDLDLGFM--VFNRVTYPNMMEFFESLGV 73
+ F R + + E G+
Sbjct: 90 NPH------------FCKSALARYRPQDFVALVERHGI 115
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 569 TLTQARRNISRHYDLSNELFSLFLDE--SMTYSCAVFKSE---------DEDLKAAQMRK 617
++ Q + ++ L+ + L Y+ +V E E
Sbjct: 102 SIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDL 161
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKY-TGITLSEEQLKYAEMKVKEA 675
V+ +I++ +++ +++G G G + +++ T CK+ G+ ++ KYAE +E
Sbjct: 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREF 220
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 2 RVAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYLGG 37
++ V+G+G +G +A L K + V +YEK G
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWG-TLAI--EIVKRTGCKYTGITLSEEQLKYAEMKVKE 674
V ++ E + G +VLEIG G G A+ EIV G + I E + AE +++
Sbjct: 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVS-IERIPELAEKAERTLRK 124
Query: 675 AGLQDLIRLYLCD-YRQLAKANKYDRII 701
G + + + + D YDRI
Sbjct: 125 LGYDN-VIVIVGDGTLGYEPLAPYDRIY 151
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYE-KDDYLGGHAKTVTFDGVDLDLG 52
+V V+G SG +A +LAK G V + + K A+++ +G+ + G
Sbjct: 11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683
+G++VL++G G+G L + + + G + G+ + + ++ L L
Sbjct: 228 GPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL-KAQAL 285
Query: 684 YLCDYRQLAKANKYDRIIS---CEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733
+ L + ++D I++ + AV + + F + L G+ L
Sbjct: 286 HSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWG-TLAI--EIVKRTGCKYTGITLSEEQLKYAEMKVKE 674
++L +E + KG VLEIG G G A+ +V G + + S + + A+ V+
Sbjct: 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVS-VEYSRKICEIAKRNVER 122
Query: 675 AGLQDLIRLYLCD-YRQLAKANKYDRII 701
G+++ + D Y + + + YD I
Sbjct: 123 LGIEN-VIFVCGDGYYGVPEFSPYDVIF 149
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 7/168 (4%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEK-DDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
VIG+G G V+A L +AG+ + E + + F G+ ++
Sbjct: 14 ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKT 73
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVL----NPYFWQ 117
+ F G++ + + E+ G + G+ + YF +
Sbjct: 74 DQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEE 133
Query: 118 MLREIIKFKDDVLGYLEELESNPDI-DRSETLGQFVNSRGYSELFQKA 164
+L + + Y + + + + + ++ +K
Sbjct: 134 ILPSVD-SNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKT 180
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHA 39
+ ++GAG G +A LA+ G V + + +
Sbjct: 8 SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS 46
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V V+G G GL+ A L GV ++ EK GH + R
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHI-----------RT--- 97
Query: 63 NMMEFFESLGV 73
+E + G+
Sbjct: 98 --VETLDLRGL 106
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC--KYTGITLSEEQLKYAEMKVKEA 675
S + V +G +++ G G G + + + G K EE K AE + +
Sbjct: 101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW 160
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRII 701
GL + + + + D + D +
Sbjct: 161 GLIERVTIKVRDISEGFDEKDVDALF 186
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 23/155 (14%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
+I++ + + ++++GCG GT +++ + + G LS +K AE+ + +
Sbjct: 28 MIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT 87
Query: 679 DL-IRLYLCDYRQL-------AKANKYDRIISCEMIEAVGHEF-MEEFFGCCESLLAEDG 729
+ + K D I + E H F E+F + L +DG
Sbjct: 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA----HWFDFEKFQRSAYANLRKDG 143
Query: 730 LLVLQFISIP--------DERYNEYRLSSDFIKEY 756
+ + + P D+ E + Y
Sbjct: 144 TIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPY 178
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIE--IVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
L+ A G VL+ G GT+A+E L E++L A +GL
Sbjct: 195 LLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL- 253
Query: 679 DLIRLYLCDYRQLAK-ANKYDRIIS 702
IR D R L + + DRI++
Sbjct: 254 SWIRFLRADARHLPRFFPEVDRILA 278
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 8e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEK 31
VIG G VSA L +AGV+ ++ E
Sbjct: 8 AVVIGTGYGAAVSALRLGEAGVQTLMLEM 36
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK-----------TVTFDGVDLD- 50
V VIG G SGL++A A+ G V+L +K + LG K T ++
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG--RKLAISGGGRCNVTNRLPLDEIVK 86
Query: 51 -LG----FM--VFNRVTYPNMMEFFESLGV 73
+ F+ F+ +++ FFE+LGV
Sbjct: 87 HIPGNGRFLYSAFSIFNNEDIITFFENLGV 116
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 842 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 100.0 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 100.0 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 100.0 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 100.0 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 100.0 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 100.0 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 100.0 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 100.0 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 99.98 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 99.98 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 99.97 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 99.97 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 99.97 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.97 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 99.97 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 99.96 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.96 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 99.96 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 99.95 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 99.95 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 99.95 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 99.94 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 99.94 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 99.94 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 99.94 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.93 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 99.92 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 99.92 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.92 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.91 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.91 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.9 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 99.89 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.89 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 99.88 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 99.87 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.86 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.85 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.82 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 99.8 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.8 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 99.8 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.8 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.79 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.78 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.77 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.77 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.76 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.76 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.76 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.75 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.74 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.73 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.73 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.73 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.73 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.72 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.72 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.72 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.72 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.72 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.72 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.72 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.71 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.71 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.7 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.69 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.69 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.69 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.69 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.69 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.68 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.68 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.68 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.68 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.67 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.67 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.67 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.67 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.66 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.66 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.66 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.66 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.65 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.65 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.65 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.65 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.64 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.64 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.64 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.64 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.64 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.64 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.64 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.64 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.64 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.63 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.63 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.62 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.62 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.62 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.61 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.61 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.61 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.6 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.6 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.6 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.59 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.59 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.59 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.59 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.59 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.58 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.58 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.57 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.57 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.57 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.55 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.55 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.55 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.55 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.55 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.55 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.55 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.54 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 99.54 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.54 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.54 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.54 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.54 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.54 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.53 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.53 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.53 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.52 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.52 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 99.51 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.51 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.51 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.51 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.51 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.5 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.5 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.5 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.5 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.49 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.49 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.49 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.49 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.49 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.49 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.49 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.48 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.48 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.48 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.47 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.47 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.47 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 99.47 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.46 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.46 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.46 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.46 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.46 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.46 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.46 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.45 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.45 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.45 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.44 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.44 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.44 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.44 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.44 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.44 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.43 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.43 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.43 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.43 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.42 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 99.42 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.42 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.42 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.41 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.41 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.41 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.41 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.41 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 99.41 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.4 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.4 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.4 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.39 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.39 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.39 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.39 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.38 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.38 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 99.38 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.37 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.37 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.36 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.36 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.36 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.36 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.36 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.36 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.35 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.34 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.34 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.33 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.32 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.31 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.31 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.3 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.29 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.29 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.29 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.29 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.28 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 99.28 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.28 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.27 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.27 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.27 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.27 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.26 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.26 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.26 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.26 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.25 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.24 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.24 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.23 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.23 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.23 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.23 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.22 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.22 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.21 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.21 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.21 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.21 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.2 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.2 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.2 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.2 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.2 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.19 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.17 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.17 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.16 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.15 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.13 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.12 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.12 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.12 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.11 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.09 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.09 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.09 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.09 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 99.07 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.06 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.05 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.05 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.04 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.02 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.02 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.01 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 99.01 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.01 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.0 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.99 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.99 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.99 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.98 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.98 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.97 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.96 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.96 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.96 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.96 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.94 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.94 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.94 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.93 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.92 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.91 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.91 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.91 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.91 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.9 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.9 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.89 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.89 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.89 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.89 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.88 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.87 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.86 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.85 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.85 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.84 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.83 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.82 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.81 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.81 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.81 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.79 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.79 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.78 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.77 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.77 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.77 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.76 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.76 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.76 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.75 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.75 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.75 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.74 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.72 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.72 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.72 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.72 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.71 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.71 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.71 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.71 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.71 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.7 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.7 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.69 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.69 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.69 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.68 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.68 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.67 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.67 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.66 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.66 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.65 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.65 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.65 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.65 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.63 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.63 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.63 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.62 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.62 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.6 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.6 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.6 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.58 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.57 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.57 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.57 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.56 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.56 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.54 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.54 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.54 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.54 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.54 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.53 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.53 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.53 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.51 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.51 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.51 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.51 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.51 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.51 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.51 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.5 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.5 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.49 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.49 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.49 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.48 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.48 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.48 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.47 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.47 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.47 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.46 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.46 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.45 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.45 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.44 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 98.43 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.4 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.4 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.4 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.39 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.38 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.38 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.38 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.36 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.36 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.35 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.35 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 98.35 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.34 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.33 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.29 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.28 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.28 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.26 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.23 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.23 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.23 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.19 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.18 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.16 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.15 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.14 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.13 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.11 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 98.1 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.08 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.06 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.04 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.02 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.02 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.01 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 98.0 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.99 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.98 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 97.98 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.93 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.92 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.91 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.89 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.86 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.83 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.81 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.79 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.79 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.78 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 97.78 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.77 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 97.76 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.76 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.75 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.72 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.72 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.69 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.66 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.65 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.64 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.64 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.63 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.62 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.62 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.62 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.61 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.6 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.58 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.54 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.54 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.54 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.52 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=389.82 Aligned_cols=270 Identities=31% Similarity=0.492 Sum_probs=250.2
Q ss_pred chHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHH
Q 035870 569 TLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIV 648 (842)
Q Consensus 569 ~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la 648 (842)
..+..+++|++|||..++||+.|+++.|+|+|++|..+..+++++|.++++.+++.+.++++.+|||||||+|.++..++
T Consensus 12 ~~~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la 91 (302)
T 3hem_A 12 QLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAV 91 (302)
T ss_dssp CCCCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHH
T ss_pred cccchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhc-------ChhhHHHHHHHH
Q 035870 649 KRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAV-------GHEFMEEFFGCC 721 (842)
Q Consensus 649 ~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~-------~~~~~~~~~~~~ 721 (842)
+..+++|+|+|+|+++++.|++++...+++++++++++|+.++ +++||+|+++.+++|+ +.+++..+++++
T Consensus 92 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~ 169 (302)
T 3hem_A 92 AEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKF 169 (302)
T ss_dssp HHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHH
T ss_pred HhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHH
Confidence 9867999999999999999999999999988999999999988 4899999999999999 556789999999
Q ss_pred HhccccCcEEEEEeecCCCcccccccCc---------cchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHH
Q 035870 722 ESLLAEDGLLVLQFISIPDERYNEYRLS---------SDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYY 792 (842)
Q Consensus 722 ~~~LkpgG~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~ 792 (842)
.++|||||+++++++..+.......... ..|+.+|+||++.+|+.+++.+.+++ +||+++++++++.||.
T Consensus 170 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~-aGf~~~~~~~~~~~y~ 248 (302)
T 3hem_A 170 YNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSN-AGWKVERYHRIGANYV 248 (302)
T ss_dssp HHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHH-HTCEEEEEEECGGGHH
T ss_pred HHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHh-CCcEEEEEEeCchhHH
Confidence 9999999999999998776543222222 27899999999999999999998887 8999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 793 QTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 793 ~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+|+..|.++|.++++++.++ |+++|.|+|++||++|+++|+.|.|+++|
T Consensus 249 ~tl~~w~~~~~~~~~~~~~~-~~~~~~~~w~~yl~~~~~~f~~~~~~~~q 297 (302)
T 3hem_A 249 PTLNAWADALQAHKDEAIAL-KGQETCDIYMHYLRGCSDLFRDKYTDVCQ 297 (302)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHhHHHHHHH-hCHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999999999999999998 89999999999999999999999999998
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=359.04 Aligned_cols=271 Identities=31% Similarity=0.541 Sum_probs=246.5
Q ss_pred CchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHH
Q 035870 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEI 647 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l 647 (842)
++.+.++++|+.|||..++||+.|+++.|+|++++|..+..++.++|.++++.+++.+.++++.+|||||||+|.++..+
T Consensus 3 ~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l 82 (287)
T 1kpg_A 3 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRA 82 (287)
T ss_dssp CCSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHH
T ss_pred CcccccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 648 VKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 648 a~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
++..+++|+|+|+|+++++.|++++...++.++++++++|+.+++ ++||+|++..+++|++++++..++++++++|||
T Consensus 83 ~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 160 (287)
T 1kpg_A 83 VEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA 160 (287)
T ss_dssp HHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT
T ss_pred HHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCC
Confidence 976688999999999999999999999888889999999999887 899999999999999877799999999999999
Q ss_pred CcEEEEEeecCCCcccc---------cccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHH
Q 035870 728 DGLLVLQFISIPDERYN---------EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798 (842)
Q Consensus 728 gG~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w 798 (842)
||+++++++..+..... .......|+.++++|++.+|+.+++.+.+.+ +||++++++.++.||.+|+..|
T Consensus 161 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~-aGf~~~~~~~~~~~y~~~~~~w 239 (287)
T 1kpg_A 161 DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASA-NGFTVTRVQSLQPHYAKTLDLW 239 (287)
T ss_dssp TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHh-CCcEEEEEEeCcHhHHHHHHHH
Confidence 99999998876553320 0112345788899999999999999988887 8999999999999999999999
Q ss_pred HHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 799 ~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
.++|.++++++.+. +++.+.|+|++||++|+++|+.|.++++|
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~g~~~~~~ 282 (287)
T 1kpg_A 240 SAALQANKGQAIAL-QSEEVYERYMKYLTGCAEMFRIGYIDVNQ 282 (287)
T ss_dssp HHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999999999988 56777888999999999999999999887
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=350.44 Aligned_cols=273 Identities=29% Similarity=0.464 Sum_probs=241.5
Q ss_pred ccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHH
Q 035870 566 RQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAI 645 (842)
Q Consensus 566 ~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~ 645 (842)
++|+.+.+.++|++|||..++||+.++++.++|++++|..+..++.++|.++++.+++.+.++++.+|||||||+|.++.
T Consensus 27 ~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~ 106 (318)
T 2fk8_A 27 SPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMR 106 (318)
T ss_dssp -----------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHH
T ss_pred ccCChhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhcc
Q 035870 646 EIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLL 725 (842)
Q Consensus 646 ~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~L 725 (842)
.+++..+++|+|+|+|+++++.|++++...++.++++++++|+.+++ ++||+|+++.+++|++.+++..+++++.++|
T Consensus 107 ~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L 184 (318)
T 2fk8_A 107 RAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIM 184 (318)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHS
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhc
Confidence 99988788999999999999999999999898878999999999886 7899999999999998777999999999999
Q ss_pred ccCcEEEEEeecCCCcccccc---------cCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHH
Q 035870 726 AEDGLLVLQFISIPDERYNEY---------RLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLR 796 (842)
Q Consensus 726 kpgG~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~ 796 (842)
||||++++.++..+....... .....|+.++++|++.+|+.+++.+.+++ +||+++++++++.+|.+++.
T Consensus 185 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~-aGf~~~~~~~~~~~y~~~~~ 263 (318)
T 2fk8_A 185 PADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEK-AGFTVPEPLSLRPHYIKTLR 263 (318)
T ss_dssp CTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHH-TTCBCCCCEECHHHHHHHHH
T ss_pred CCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHh-CCCEEEEEEecchhHHHHHH
Confidence 999999999988765332110 11236788899999999999999988887 89999999999999999999
Q ss_pred HHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 797 CWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 797 ~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
.|.++|.++++++.+. +++.|.|+|++||++|+++|+.|.++++|
T Consensus 264 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~g~~~~~~ 308 (318)
T 2fk8_A 264 IWGDTLQSNKDKAIEV-TSEEVYNRYMKYLRGCEHYFTDEMLDCSL 308 (318)
T ss_dssp HHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 9999999999999887 68999999999999999999999998876
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=324.00 Aligned_cols=397 Identities=22% Similarity=0.267 Sum_probs=273.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecCCCCCCCceeEee-CCeeeecceEeecCC--CchhHHHHHHHcCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRV--TYPNMMEFFESLGVDM 75 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~--~~~~~~~l~~~lGl~~ 75 (842)
|||+|||||++||+||++|+++|+ +|+|||+++++||+++|... +|+.+|.|++++... .++.+.++++++|+..
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 82 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDS 82 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcc
Confidence 589999999999999999999999 99999999999999999876 599999999998532 2567889999999986
Q ss_pred ccccce-------eeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccH
Q 035870 76 EMSDMS-------FSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETL 148 (842)
Q Consensus 76 ~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (842)
+..... ..+.+.+|+.+.++. .+...+........+..... +..........++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~p~--~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~s~ 146 (477)
T 3nks_A 83 EVLPVRGDHPAAQNRFLYVGGALHALPT--GLRGLLRPSPPFSKPLFWAG--------------LRELTKPRGKEPDETV 146 (477)
T ss_dssp GEEEECTTSHHHHCEEEEETTEEEECCC--SSCC---CCTTSCSCSSHHH--------------HTTTTSCCCCSSCCBH
T ss_pred eeeecCCCCchhcceEEEECCEEEECCC--ChhhcccccchhhhHHHHHH--------------HHhhhcCCCCCCCcCH
Confidence 654221 123334555544432 12222211111111111111 1111111122367899
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh----ccc-c-----c---------------cCC
Q 035870 149 GQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN----HHL-L-----Q---------------LFG 203 (842)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~-~-----~---------------~~~ 203 (842)
.+|+.+. +++.+.+.++.|++.++|+.+++++ ++..++..+.. .+. . . ...
T Consensus 147 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l---s~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (477)
T 3nks_A 147 HSFAQRR-LGPEVASLAMDSLCRGVFAGNSREL---SIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAE 222 (477)
T ss_dssp HHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTB---BHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHT
T ss_pred HHHHHHh-hCHHHHHHHHHHHhcccccCCHHHh---hHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhccc
Confidence 9999986 7788889999999999999999888 44433222111 000 0 0 011
Q ss_pred CCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCCh
Q 035870 204 RPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDALKILGNQATF 282 (842)
Q Consensus 204 ~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~ 282 (842)
...+++++||++.++++|++.+++.|++|+++++|++|+.++++ |.|++. |+++.||+||+|+|++.+.+++++ ..+
T Consensus 223 ~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~~~~~ll~~-~~~ 300 (477)
T 3nks_A 223 RWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPASVLSELLPA-EAA 300 (477)
T ss_dssp TCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHHHHHHHSCG-GGH
T ss_pred CccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHHHHHHhccc-cCH
Confidence 24578999999999999999999999999999999999998877 888775 448999999999999999999876 456
Q ss_pred HHHHhccccceee-ceEEEecCCCCcCCCCC---------------Ccceeeecc--cCCCceEEEEEcccc--------
Q 035870 283 DETRILGAFQYVY-SDIFLHRDKRFMPQNPA---------------AWSAWNFLE--SFDSKVCLTYWLNVL-------- 336 (842)
Q Consensus 283 ~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~---------------~~~~~~~~~--~~~~~~~v~~~~~~l-------- 336 (842)
...+.+.+++|.+ .++++.++.+++|.... .|.+..+.. .+++...++.++...
T Consensus 301 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~ 380 (477)
T 3nks_A 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEAS 380 (477)
T ss_dssp HHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHS
T ss_pred HHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccc
Confidence 6788889999998 47889999887754321 111111111 122556666655421
Q ss_pred -cCCCC-----CCCCeEEe-cCCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-h-cCCCCeEEecc-ccCCCCCchh
Q 035870 337 -QNLGE-----TSLPFLVT-LNPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH-I-QGKRGIWFCGA-YQGYGFHEDG 405 (842)
Q Consensus 337 -~~l~~-----~~~~~~~~-l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~-~~~~~l~~aG~-~~g~G~~e~A 405 (842)
..+.+ ...+.+.. ++....|.. .+.+|.++.|.|.+++......+.. . ...++|++||+ |.|.|+ ++|
T Consensus 381 ~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv-~~a 459 (477)
T 3nks_A 381 GCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAV-NDC 459 (477)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSH-HHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcH-HHH
Confidence 00111 01112222 333323333 5679999999999999887777665 2 23468999999 568888 999
Q ss_pred HhHHHHHHHHhcCCc
Q 035870 406 LKAGMTAAHGVLGKS 420 (842)
Q Consensus 406 ~~SG~~aA~~Il~~~ 420 (842)
+.||+++|++|++..
T Consensus 460 ~~sg~~aA~~il~~~ 474 (477)
T 3nks_A 460 IESGRQAAVSVLGTE 474 (477)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998753
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=320.02 Aligned_cols=399 Identities=17% Similarity=0.262 Sum_probs=266.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC------CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG------VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVD 74 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G------~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~ 74 (842)
+||+|||||++||+||++|+++| ++|+|||+++++||+++|...+|+.+|.|++++.. .++++.++++++|+.
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~ 84 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLE-RKKSAPQLVKDLGLE 84 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEET-TCTHHHHHHHHTTCC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhh-CCHHHHHHHHHcCCc
Confidence 38999999999999999999999 99999999999999999999999999999999854 688999999999998
Q ss_pred ccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHH
Q 035870 75 MEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFV 152 (842)
Q Consensus 75 ~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (842)
..... ....+.+.+++...++.... ...+......+....... ........+.+ .......++.++.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~s~~~~~ 156 (470)
T 3i6d_A 85 HLLVNNATGQSYVLVNRTLHPMPKGAV-MGIPTKIAPFVSTGLFSL----SGKARAAMDFI---LPASKTKDDQSLGEFF 156 (470)
T ss_dssp TTEEECCCCCEEEECSSCEEECCC--------------------------CCSHHHHHHHH---SCCCSSSSCCBHHHHH
T ss_pred ceeecCCCCccEEEECCEEEECCCCcc-cCCcCchHHhhccCcCCH----HHHHHHhcCcc---cCCCCCCCCcCHHHHH
Confidence 76531 22233334555444332110 000000000000000000 00000111111 1112223688999999
Q ss_pred HhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh----cc-ccc---------------cCCCCceEEecC
Q 035870 153 NSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN----HH-LLQ---------------LFGRPQWLTVRW 212 (842)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~-~~~---------------~~~~~~~~~~~g 212 (842)
.+. ++..+.+.++.|++.++|+.+++++ ++...+.++.. .+ +.. ......+++++|
T Consensus 157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (470)
T 3i6d_A 157 RRR-VGDEVVENLIEPLLSGIYAGDIDKL---SLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLST 232 (470)
T ss_dssp HHH-SCHHHHHHTHHHHHHHTTCSCTTTB---BHHHHCGGGCC-------------------------------EEEETT
T ss_pred HHh-cCHHHHHHhccchhcEEecCCHHHh---hHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCC
Confidence 986 7888889999999999999998887 33332222110 00 000 001346789999
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccc
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQ 292 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~ 292 (842)
|++.+++.|++.+++ ++|+++++|++|+.++++|.|++.+|+++.||+||+|+|++++.+++.++ +..+++..++
T Consensus 233 g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~---~~~~~~~~~~ 307 (470)
T 3i6d_A 233 GLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSEL---PAISHLKNMH 307 (470)
T ss_dssp CTHHHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHHHTTTS---TTHHHHHTCE
T ss_pred hHHHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHHHcCCc---hhhHHHhcCC
Confidence 999999999999854 79999999999999999999999999889999999999999999998763 2467788899
Q ss_pred eee-ceEEEecCCCCcCCCCC-----------------Ccceeeecc-cCCCceEEEEEccccc-----CCCC-----CC
Q 035870 293 YVY-SDIFLHRDKRFMPQNPA-----------------AWSAWNFLE-SFDSKVCLTYWLNVLQ-----NLGE-----TS 343 (842)
Q Consensus 293 ~~~-~~v~l~~~~~~~p~~~~-----------------~~~~~~~~~-~~~~~~~v~~~~~~l~-----~l~~-----~~ 343 (842)
|.+ .++++.++.++|+.... .|.+..+.. .|++..++..++.... .+.+ .+
T Consensus 308 ~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (470)
T 3i6d_A 308 STSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIV 387 (470)
T ss_dssp EEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHH
T ss_pred CCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHH
Confidence 999 58889999887753210 122211222 2455666666553211 1111 01
Q ss_pred CCeEEecCC-CCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEecc-ccCCCCCchhHhHHHHHHHHhcC
Q 035870 344 LPFLVTLNP-DHVPEH-TLLKWSTGHPVPSVAASKASLELDH--IQGKRGIWFCGA-YQGYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 344 ~~~~~~l~~-~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG~-~~g~G~~e~A~~SG~~aA~~Il~ 418 (842)
.+.+..+.+ ...|.. .+.+|.++.|.|.+++......+.+ .++.+|||+||+ +.|.|+ ++|+.||+++|++|+.
T Consensus 388 ~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv-~~a~~sG~~aA~~i~~ 466 (470)
T 3i6d_A 388 LEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGI-PDCIDQGKAAVSDALT 466 (470)
T ss_dssp HHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCH-HHHHHHHHHHHHHHHH
Confidence 122222322 222332 6779999999999988776655544 245689999999 457776 9999999999999975
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=311.15 Aligned_cols=392 Identities=19% Similarity=0.225 Sum_probs=264.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+||+|||||++||+||+.|+++|++|+|||+++++||+++|.+.+|+.+|.|++++.. .++.+.++++++|+.......
T Consensus 17 ~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~-~~~~~~~~~~~~gl~~~~~~~ 95 (478)
T 2ivd_A 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD-REPATRALAAALNLEGRIRAA 95 (478)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET-TCHHHHHHHHHTTCGGGEECS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhh-hhHHHHHHHHHcCCcceeeec
Confidence 5899999999999999999999999999999999999999999999999999999964 578889999999997543311
Q ss_pred ----eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCC-CCCCccccHHHHHHhc
Q 035870 81 ----SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESN-PDIDRSETLGQFVNSR 155 (842)
Q Consensus 81 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~~ 155 (842)
...+.+.+|+.+.++. ....++.. .... +.... ..+...... ....++.|+.+|+++.
T Consensus 96 ~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~l~~~ 158 (478)
T 2ivd_A 96 DPAAKRRYVYTRGRLRSVPA--SPPAFLAS--DILP--LGARL-----------RVAGELFSRRAPEGVDESLAAFGRRH 158 (478)
T ss_dssp CSSCCCEEEEETTEEEECCC--SHHHHHTC--SSSC--HHHHH-----------HHHGGGGCCCCCTTCCCBHHHHHHHH
T ss_pred CccccceEEEECCEEEECCC--CHHHhccC--CCCC--HHHHH-----------HHhhhhhcCCCCCCCCCCHHHHHHHh
Confidence 1223334444333321 11111100 0111 00000 111111111 1113678999999986
Q ss_pred CCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHh----hcc-c----c----------c-cCCC----CceEEec
Q 035870 156 GYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCR----NHH-L----L----------Q-LFGR----PQWLTVR 211 (842)
Q Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~-~----~----------~-~~~~----~~~~~~~ 211 (842)
+++.+.+.++.|++..+|+.++++++ +..++..+. ..+ + . . .... ..+++++
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
T 2ivd_A 159 -LGHRATQVLLDAVQTGIYAGDVEQLS---VAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFD 234 (478)
T ss_dssp -TCHHHHHHTHHHHHHHHHCCCTTTBB---HHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEET
T ss_pred -hCHHHHHHHHHHHhceeecCCHHHhh---HHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEEC
Confidence 78888899999999999999988874 322221110 000 0 0 0 0012 5788999
Q ss_pred CChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe---CCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhc
Q 035870 212 WRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC---GDGSREFYNSCVMALHAPDALKILGNQATFDETRIL 288 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l 288 (842)
||++.++++|++.+ |++|+++++|++|..++++|.|++ .+|+++.||+||+|+|++.+.+++++ +++...+++
T Consensus 235 gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll~~-l~~~~~~~l 310 (478)
T 2ivd_A 235 GGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP-LDDALAALV 310 (478)
T ss_dssp TCTHHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT-TCHHHHHHH
T ss_pred CCHHHHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHHhhc-cCHHHHHHH
Confidence 99999999999998 679999999999999888899988 77888999999999999999999875 677778888
Q ss_pred cccceee-ceEEEecCCCCcCCC-CC---------------Ccceeeecc-cCCCceEEEEEccccc-----CCCCC---
Q 035870 289 GAFQYVY-SDIFLHRDKRFMPQN-PA---------------AWSAWNFLE-SFDSKVCLTYWLNVLQ-----NLGET--- 342 (842)
Q Consensus 289 ~~~~~~~-~~v~l~~~~~~~p~~-~~---------------~~~~~~~~~-~~~~~~~v~~~~~~l~-----~l~~~--- 342 (842)
.++++.+ .++++.++.++|+.. .. .|.++.+.. .|++..+++.++.... .+.+.
T Consensus 311 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~ 390 (478)
T 2ivd_A 311 AGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALA 390 (478)
T ss_dssp HTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHH
T ss_pred hcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHH
Confidence 9999988 588899998876642 11 111111111 2445556665554221 11110
Q ss_pred --CCCeEEec-CCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEecccc-CCCCCchhHhHHHHHHHHh
Q 035870 343 --SLPFLVTL-NPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQ-GYGFHEDGLKAGMTAAHGV 416 (842)
Q Consensus 343 --~~~~~~~l-~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~-g~G~~e~A~~SG~~aA~~I 416 (842)
+.+.+..+ .....|.. .+.+|..++|.|.++.......+.. ....+||||||+|+ +.|+ ++|+.||+++|++|
T Consensus 391 ~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv-~gA~~SG~~aA~~i 469 (478)
T 2ivd_A 391 ALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGL-NDCIRNAAQLADAL 469 (478)
T ss_dssp HHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCH-HHHHHHHHHHHHHH
Confidence 11111222 22222332 5569999999888887655444433 22258999999986 7776 99999999999999
Q ss_pred cCC
Q 035870 417 LGK 419 (842)
Q Consensus 417 l~~ 419 (842)
++.
T Consensus 470 ~~~ 472 (478)
T 2ivd_A 470 VAG 472 (478)
T ss_dssp CC-
T ss_pred HHh
Confidence 764
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=311.97 Aligned_cols=399 Identities=16% Similarity=0.267 Sum_probs=268.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||++||+||++|+++| ++|+|||+++++||+++|...+|+.+|.|++++.. .++.+.++++++|++....
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~l~~~lg~~~~~~ 83 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVA-RKHILTDLIEAIGLGEKLV 83 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEET-TSTHHHHHHHHTTCGGGEE
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhc-ccHHHHHHHHHcCCcceEe
Confidence 48999999999999999999999 99999999999999999999999999999999854 6788999999999987654
Q ss_pred c--ceeeEeccCCCceeeCCCC--CCcchhhh--hhccCChHHHHHHHHHHhhhHHHHHHHHhhcC-CCCCCccccHHHH
Q 035870 79 D--MSFSVSLEKGHGCEWGSRN--GLSSLFAQ--KKNVLNPYFWQMLREIIKFKDDVLGYLEELES-NPDIDRSETLGQF 151 (842)
Q Consensus 79 ~--~~~~~~~~~g~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ 151 (842)
. ....+.+.+++...++... +++..... ....+... ... ...+....... .....++.++.+|
T Consensus 84 ~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (475)
T 3lov_A 84 RNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEE-----EKQ-----EVADLLLHPSDSLRIPEQDIPLGEY 153 (475)
T ss_dssp ECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHH-----HHH-----HHHHHHHSCCTTCCCCSSCCBHHHH
T ss_pred ecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChh-----HHH-----HhhCcccCCcccccCCCCCcCHHHH
Confidence 2 2223333455544443211 00000000 00111111 000 11111211111 0012367899999
Q ss_pred HHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHH-HHHhhccc-cc------------------cCCCCceEEec
Q 035870 152 VNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVL-SFCRNHHL-LQ------------------LFGRPQWLTVR 211 (842)
Q Consensus 152 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~------------------~~~~~~~~~~~ 211 (842)
+.+. +++.+.+.++.|++.++|+.++++++.......+ .+....+. .. ....+.+++++
T Consensus 154 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (475)
T 3lov_A 154 LRPR-LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLE 232 (475)
T ss_dssp HHHH-HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEET
T ss_pred HHHH-hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeC
Confidence 9986 7888899999999999999999988654332221 11111100 00 01246789999
Q ss_pred CChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhcccc
Q 035870 212 WRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAF 291 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~ 291 (842)
||++.++++|++.+.+ ++|+++++|++|+.++++|.|++.+| ++.||+||+|+|++++.+++++.+. +.+.++
T Consensus 233 ~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~~~~----~~~~~~ 305 (475)
T 3lov_A 233 TGLESLIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPDAHL----PELEQL 305 (475)
T ss_dssp TCHHHHHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHCTTSCC----HHHHTC
T ss_pred ChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHcCccCH----HHHhcC
Confidence 9999999999999964 79999999999999999999999999 8999999999999999999876322 677888
Q ss_pred ceee-ceEEEecCCCCc----------CCCCC------Ccceeeecc-cCCCceEEEEEccccc-----CCCCC-----C
Q 035870 292 QYVY-SDIFLHRDKRFM----------PQNPA------AWSAWNFLE-SFDSKVCLTYWLNVLQ-----NLGET-----S 343 (842)
Q Consensus 292 ~~~~-~~v~l~~~~~~~----------p~~~~------~~~~~~~~~-~~~~~~~v~~~~~~l~-----~l~~~-----~ 343 (842)
+|.+ .++++.++.++. |.... .|.+..+.. .|+ ...++.++.... .+.+. +
T Consensus 306 ~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 384 (475)
T 3lov_A 306 TTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEVLQQAV 384 (475)
T ss_dssp CEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHHHHHHH
T ss_pred CCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHHHHHHH
Confidence 9998 578888887651 11110 111111121 123 455555553211 11110 1
Q ss_pred CCeEEec-CCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh--hcCCCCeEEeccc-cCCCCCchhHhHHHHHHHHhcC
Q 035870 344 LPFLVTL-NPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH--IQGKRGIWFCGAY-QGYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 344 ~~~~~~l-~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~--~~~~~~l~~aG~~-~g~G~~e~A~~SG~~aA~~Il~ 418 (842)
.+.+..+ +....|.. .+.+|..+.|.|.+++......+.+ .++.+||||||+| .+.|+ ++|+.||+++|++|++
T Consensus 385 ~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~-~~a~~sG~~aA~~i~~ 463 (475)
T 3lov_A 385 LQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGL-PDCVASAKTMIESIEL 463 (475)
T ss_dssp HHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCH-HHHHHHHHHHHHHHHH
Confidence 1122222 22222332 6779999999999998776655554 2456899999985 46676 9999999999999987
Q ss_pred Cc
Q 035870 419 KS 420 (842)
Q Consensus 419 ~~ 420 (842)
.-
T Consensus 464 ~l 465 (475)
T 3lov_A 464 EQ 465 (475)
T ss_dssp TC
T ss_pred Hh
Confidence 54
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=306.16 Aligned_cols=390 Identities=18% Similarity=0.195 Sum_probs=253.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecC-CCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR-VTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~~l~~~lGl~~~~~~ 79 (842)
|||+|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++.+ ..++.+.++++++|+......
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVR 80 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEe
Confidence 7999999999999999999999999999999999999999999999999999866533 245567899999998765432
Q ss_pred ceee-Ee--ccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 80 MSFS-VS--LEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 80 ~~~~-~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
.... .. ..++. ..+... +-...+......+.+.- ..++. ..+..... ...+..++.+|+.+.
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~--~~~~~~s~~~~l~~~- 145 (425)
T 3ka7_A 81 SEMTTVRVPLKKGN-PDYVKG-FKDISFNDFPSLLSYKD------RMKIA----LLIVSTRK--NRPSGSSLQAWIKSQ- 145 (425)
T ss_dssp CCCCEEEEESSTTC-CSSTTC-EEEEEGGGGGGGSCHHH------HHHHH----HHHHHTTT--SCCCSSBHHHHHHHH-
T ss_pred cCCceEEeecCCCc-cccccc-ccceehhhhhhhCCHHH------HHHHH----HHHHhhhh--cCCCCCCHHHHHHHh-
Confidence 2111 11 11100 000000 00000111111122110 01111 01111111 122578999999988
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCC
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~ 236 (842)
+.+...+.++.+++...++.+++++ ++..+...+.... ..+...+++||++.++++|++.++++|++|++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~-----~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~ 217 (425)
T 3ka7_A 146 VSDEWLIKFADSFCGWALSLKSDEV---PVEEVFEIIENMY-----RFGGTGIPEGGCKGIIDALETVISANGGKIHTGQ 217 (425)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCGGGS---BHHHHHHHHHHHH-----HHCSCEEETTSHHHHHHHHHHHHHHTTCEEECSC
T ss_pred cCCHHHHHHHHHHHHHHhCCCcccc---hHHHHHHHHHHHH-----hcCCccccCCCHHHHHHHHHHHHHHcCCEEEECC
Confidence 5566677888899888899888887 4443333332210 1134567899999999999999999999999999
Q ss_pred CeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHHHHHhhcCCC----ChHHHHhccccceee-ceEEEecCCCCcCCC
Q 035870 237 EVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPDALKILGNQA----TFDETRILGAFQYVY-SDIFLHRDKRFMPQN 310 (842)
Q Consensus 237 ~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~----~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~ 310 (842)
+|++|..+++++. |++. |+++.||+||+|+|++.+.+++++.. ++...+.+.++++++ .++++.++.++++..
T Consensus 218 ~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~ 296 (425)
T 3ka7_A 218 EVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGHT 296 (425)
T ss_dssp CEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSCSS
T ss_pred ceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccCcC
Confidence 9999999988875 7665 77899999999999999999987432 455567778888877 467788877643221
Q ss_pred -------CC-----Ccceeeec-ccCCCceEEEEEcccc-cCCC------CCCCCeEEecCCCCCCcc-eeEEEEcCCCC
Q 035870 311 -------PA-----AWSAWNFL-ESFDSKVCLTYWLNVL-QNLG------ETSLPFLVTLNPDHVPEH-TLLKWSTGHPV 369 (842)
Q Consensus 311 -------~~-----~~~~~~~~-~~~~~~~~v~~~~~~l-~~l~------~~~~~~~~~l~~~~~~~~-~~~~w~~~~p~ 369 (842)
.. .+.+...+ ..|+++.++....... .... +...+.+..+.|...++. .+.+|..++|.
T Consensus 297 ~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~v~~~~~~~P~ 376 (425)
T 3ka7_A 297 GVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEIFPGKRYEVLLIQSYHDEWPV 376 (425)
T ss_dssp SEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHHSTTCCEEEEEEEEEBTTBCS
T ss_pred EEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHhCCCCceEEEEEEEECCCccc
Confidence 11 11111111 1355666654433211 1111 111122233344323333 55699999999
Q ss_pred CCHHHHHHHHhhhhhcCCCCeEEecccc----CCCCCchhHhHHHHHHHHhcC
Q 035870 370 PSVAASKASLELDHIQGKRGIWFCGAYQ----GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~l~~aG~~~----g~G~~e~A~~SG~~aA~~Il~ 418 (842)
|.+++. .++....+.+|||+||+|+ |.|+ ++|+.||+++|++|+|
T Consensus 377 ~~~~~~---~~~~~~~p~~gL~laG~~~~~~gg~gv-~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 377 NRAASG---TDPGNETPFSGLYVVGDGAKGKGGIEV-EGVALGVMSVMEKVLG 425 (425)
T ss_dssp BSSCTT---CCCCSBCSSBTEEECSTTSCCTTCCHH-HHHHHHHHHHHHC---
T ss_pred cccccC---CCCCCCCCcCCeEEeCCccCCCCCCcc-HHHHHHHHHHHHHhhC
Confidence 987633 3344466778999999977 3566 9999999999999986
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=308.12 Aligned_cols=399 Identities=14% Similarity=0.105 Sum_probs=259.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+||+|||||++||+||++|+++|++|+|||+++++|||++|.+.+|+.+|.|++++++ .++++.++++++|+.......
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~-~~~~~~~~l~~lgl~~~~~~~ 118 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW-HQSHVWREITRYKMHNALSPS 118 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT-TSHHHHHHHHHTTCTTCEEES
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecC-ccHHHHHHHHHcCCcceeecc
Confidence 3799999999999999999999999999999999999999999999999999999964 688999999999995332211
Q ss_pred ------eeeEeccC--CCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhH-HHHHHHHhhcCC---C--CCCccc
Q 035870 81 ------SFSVSLEK--GHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKD-DVLGYLEELESN---P--DIDRSE 146 (842)
Q Consensus 81 ------~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~--~~~~~~ 146 (842)
...+.+.+ +....++ ... ....+...+..+.+... .....+...... + ...++.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (495)
T 2vvm_A 119 FNFSRGVNHFQLRTNPTTSTYMT---------HEA---EDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEM 186 (495)
T ss_dssp CCCSSSCCEEEEESSTTCCEEEC---------HHH---HHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTS
T ss_pred cccCCCceEEEecCCCCceeecC---------HHH---HHHHHHHHHHHHHccchhhhhhcCCCCCCcccCcchhhhhhh
Confidence 01111111 1111110 000 00000111111111000 000000000000 0 001467
Q ss_pred cHHHHHHhcC--CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhcc--ccccCCCCceEEecCChhHHHHHHH
Q 035870 147 TLGQFVNSRG--YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHH--LLQLFGRPQWLTVRWRSHSYVNKVR 222 (842)
Q Consensus 147 s~~~~l~~~~--~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~~~L~ 222 (842)
|+.+|+++.+ +++.. ..++.+++...++.+++++ ++..++.++.... ..........++++||++.++++|+
T Consensus 187 s~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 262 (495)
T 2vvm_A 187 SYSERIDQIRDELSLNE-RSSLEAFILLCSGGTLENS---SFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFW 262 (495)
T ss_dssp BHHHHHHHHGGGCCHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHH
T ss_pred hHHHHHHHhhccCCHHH-HHHHHHHHHHhcCCCcchh---hHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHH
Confidence 9999999876 66654 5788899999998888877 6666665543221 0000112345678999999999999
Q ss_pred HHhhhcC-ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhh-cCCCChHHHHhccccceee-ceEE
Q 035870 223 KQLESWG-CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKIL-GNQATFDETRILGAFQYVY-SDIF 299 (842)
Q Consensus 223 ~~l~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~v~ 299 (842)
+.+++.| ++|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+++ .+.+++...++++.+.|.+ .+++
T Consensus 263 ~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv~ 342 (495)
T 2vvm_A 263 EEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVH 342 (495)
T ss_dssp HHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCEEEE
T ss_pred HHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCceeEEE
Confidence 9999888 99999999999999888999999999889999999999999998875 4446777788888888887 6899
Q ss_pred EecCCCCcC--------CCCCCcceeeecccCCCceEEEEEcccccCCCCC-----CCCeEEecCCC-CCCcc-eeEEEE
Q 035870 300 LHRDKRFMP--------QNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGET-----SLPFLVTLNPD-HVPEH-TLLKWS 364 (842)
Q Consensus 300 l~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~l~~~-----~~~~~~~l~~~-~~~~~-~~~~w~ 364 (842)
+.++.++|+ .....+ .|.....+++..++..+......+... +.+.+..+.+. ..|.. .+.+|.
T Consensus 343 l~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~vl~~~~~~~~~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~W~ 421 (495)
T 2vvm_A 343 AEVDNKDMRSWTGIAYPFNKLCY-AIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWV 421 (495)
T ss_dssp EEESCGGGGGEEEEECSSCSSCE-EEEEEECTTSCEEEEEEECSTTCCCTTTCHHHHHHHHHTTSTTSCCEEEEEECCTT
T ss_pred EEECCccCCCceeEecCCCCcEE-EecCCCCCCCCeEEEEEeCccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeEcC
Confidence 999887642 111111 122112244545555555432222111 11222333443 22222 344774
Q ss_pred ------cCCCCCCHHHHHH-HHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcCC
Q 035870 365 ------TGHPVPSVAASKA-SLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 365 ------~~~p~~~~~~~~~-~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~~ 419 (842)
.+++.+.++.... .+.+ .++.++|||||+++. .|++|+|+.||+++|++|+..
T Consensus 422 ~dp~~~g~y~~~~~g~~~~~~~~l--~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~ 484 (495)
T 2vvm_A 422 KDEFAKGAWFFSRPGMVSECLQGL--REKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEE 484 (495)
T ss_dssp TCTTTSSSSCCCCTTHHHHHHHHH--HCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCcCCCcchhhHHHH--hCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHH
Confidence 2455566665432 2222 456789999999874 566699999999999999753
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=304.79 Aligned_cols=397 Identities=16% Similarity=0.161 Sum_probs=259.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC-CeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD-GVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~-g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
+||+|||||+|||+||++|+++|++|+|||+++++||+++|.+.. |+.+|.|++++++ .++.+.++++++|++.....
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~~ 83 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILRLAKELGLETYKVN 83 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECT-TCHHHHHHHHHTTCCEEECC
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecC-CcHHHHHHHHHcCCcceecc
Confidence 489999999999999999999999999999999999999999985 9999999999965 47788899999999865432
Q ss_pred c-eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCC-----CC--CCccccHHHH
Q 035870 80 M-SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESN-----PD--IDRSETLGQF 151 (842)
Q Consensus 80 ~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~s~~~~ 151 (842)
. ...+.+.+|+.+.+... ++.. ..+.... ++.++.............. +. ..++.++.+|
T Consensus 84 ~~~~~~~~~~g~~~~~~~~--~p~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 151 (520)
T 1s3e_A 84 EVERLIHHVKGKSYPFRGP--FPPV-------WNPITYL---DHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKEL 151 (520)
T ss_dssp CSSEEEEEETTEEEEECSS--SCCC-------CSHHHHH---HHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHH
T ss_pred cCCceEEEECCEEEEecCC--CCCC-------CCHHHHH---HHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHH
Confidence 2 11222334444444321 1110 1111000 1111111111111111000 00 0146899999
Q ss_pred HHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccc----cccCCCCceEEecCChhHHHHHHHHHhhh
Q 035870 152 VNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHL----LQLFGRPQWLTVRWRSHSYVNKVRKQLES 227 (842)
Q Consensus 152 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gG~~~l~~~L~~~l~~ 227 (842)
+++...++.. ..++.+++...++.+++++ |+..++.++...+. ........+++++||++.++++|++.+
T Consensus 152 l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~---s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l-- 225 (520)
T 1s3e_A 152 LDKLCWTESA-KQLATLFVNLCVTAETHEV---SALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL-- 225 (520)
T ss_dssp HHHHCSSHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH--
T ss_pred HHhhCCCHHH-HHHHHHHHhhhcCCChHHh---HHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHc--
Confidence 9998766654 6788888888999888776 66666666654321 111233456889999999999999988
Q ss_pred cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhh-cCCCChHHHHhccccceee-ceEEEecCCC
Q 035870 228 WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKIL-GNQATFDETRILGAFQYVY-SDIFLHRDKR 305 (842)
Q Consensus 228 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~ 305 (842)
|++|++|++|++|..++++|.|++.+|+++.||+||+|+|+..+.+++ .+.++....+++.++++.+ .++++.++.+
T Consensus 226 -g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~ 304 (520)
T 1s3e_A 226 -GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEP 304 (520)
T ss_dssp -GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCCEEEEEEECSSC
T ss_pred -CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCC
Confidence 789999999999999999999999999899999999999999988875 3446677788899999988 5899999998
Q ss_pred CcCCCCC----------Ccceeeecc--cCCCceEEEEEccc-----ccCCCCC-----CCCeEEecCCC---CCCcc-e
Q 035870 306 FMPQNPA----------AWSAWNFLE--SFDSKVCLTYWLNV-----LQNLGET-----SLPFLVTLNPD---HVPEH-T 359 (842)
Q Consensus 306 ~~p~~~~----------~~~~~~~~~--~~~~~~~v~~~~~~-----l~~l~~~-----~~~~~~~l~~~---~~~~~-~ 359 (842)
+|+.... .+..+.+.. .+++...+..++.. +..+.+. +.+.+..+.+. ..|.. .
T Consensus 305 ~w~~~~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~ 384 (520)
T 1s3e_A 305 FWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYE 384 (520)
T ss_dssp GGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCSEEE
T ss_pred cccCCCCCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccccCCccEEE
Confidence 8764321 111122221 12222444444422 1111111 11112222221 12322 4
Q ss_pred eEEEEc---CC----CCCCHHHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcC
Q 035870 360 LLKWST---GH----PVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 360 ~~~w~~---~~----p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~ 418 (842)
..+|.. .. +.+.++..... .....++.+||||||+++ ..|.+++|+.||+++|++|+.
T Consensus 385 ~~~W~~~~~~~G~~~~~~~~g~~~~~-~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~ 452 (520)
T 1s3e_A 385 EKNWCEEQYSGGCYTTYFPPGILTQY-GRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452 (520)
T ss_dssp EEEGGGCTTTCSSSCBCCCTTHHHHH-GGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCCCCccccCCCccccc-hHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHH
Confidence 446742 11 23444443221 112245678999999976 445559999999999999975
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=299.95 Aligned_cols=388 Identities=15% Similarity=0.217 Sum_probs=247.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-CeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
+||+|||||++||+||++|+++| ++|+|||+++++||+++|...+|+.+|.|++++. ..++++.++++++|+......
T Consensus 7 ~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~-~~~~~~~~l~~~~g~~~~~~~ 85 (424)
T 2b9w_A 7 SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGV-PSYDTIQEIMDRTGDKVDGPK 85 (424)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBC-TTCHHHHHHHHHHCCCCCSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeec-CCcHHHHHHHHHhCCcccccc
Confidence 58999999999999999999999 9999999999999999999999999999999985 367889999999998865544
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhc-----CCCCCCccccHHHHHHh
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELE-----SNPDIDRSETLGQFVNS 154 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~l~~ 154 (842)
....+.+.+|..+.... .. .. .+.+...+. ++............ ......+..++.+|+.+
T Consensus 86 ~~~~~~~~~g~~~~~~~-~~----~~------~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 151 (424)
T 2b9w_A 86 LRREFLHEDGEIYVPEK-DP----VR------GPQVMAAVQ---KLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLAL 151 (424)
T ss_dssp CCEEEECTTSCEECGGG-CT----TH------HHHHHHHHH---HHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHH
T ss_pred ccceeEcCCCCEecccc-Cc----cc------chhHHHHHH---HHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHh
Confidence 44444444544321100 00 00 000111111 11111100000000 00111246899999999
Q ss_pred cCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEe
Q 035870 155 RGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRT 234 (842)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~ 234 (842)
.+.+ .+.+.+..|++...|+ ++. ..|+..++.++....+.....++. +.+.+|+++++++|++.+ +.+|++
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~-~~~---~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~~~l~~~l---~~~v~~ 222 (424)
T 2b9w_A 152 NGCE-AARDLWINPFTAFGYG-HFD---NVPAAYVLKYLDFVTMMSFAKGDL-WTWADGTQAMFEHLNATL---EHPAER 222 (424)
T ss_dssp TTCG-GGHHHHTTTTCCCCCC-CTT---TSBHHHHHHHSCHHHHHHHHHTCC-BCCTTCHHHHHHHHHHHS---SSCCBC
T ss_pred hCcH-HHHHHHHHHHHhhccC-ChH---hcCHHHHHHhhhHhhhhcccCCce-EEeCChHHHHHHHHHHhh---cceEEc
Confidence 8765 4666677788777775 333 457777666654332211112223 368899999999999998 568999
Q ss_pred CCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeeceE--EEecCCC----CcC
Q 035870 235 SSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI--FLHRDKR----FMP 308 (842)
Q Consensus 235 ~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~v--~l~~~~~----~~p 308 (842)
|++|++|..++++|.|++.+| ++.||+||+|+|++.+.+++++ .+.+++.+.++.+.+..+ .+....+ +.|
T Consensus 223 ~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
T 2b9w_A 223 NVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDYSDA--DDDEREYFSKIIHQQYMVDACLVKEYPTISGYVP 299 (424)
T ss_dssp SCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTSBCC--CHHHHHHHTTCEEEEEEEEEEEESSCCSSEEECG
T ss_pred CCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhccCC--CHHHHHHHhcCCcceeEEEEEEeccCCccccccc
Confidence 999999999988999999888 4899999999999988777653 455556677777766322 2221111 223
Q ss_pred CC----CCCcceeeecccCC--CceEEEEEcccccCCCCCC--------CCeEEecCCCCCCccee-EEEEcCCCCCCHH
Q 035870 309 QN----PAAWSAWNFLESFD--SKVCLTYWLNVLQNLGETS--------LPFLVTLNPDHVPEHTL-LKWSTGHPVPSVA 373 (842)
Q Consensus 309 ~~----~~~~~~~~~~~~~~--~~~~v~~~~~~l~~l~~~~--------~~~~~~l~~~~~~~~~~-~~w~~~~p~~~~~ 373 (842)
.+ ...|..|+....++ ...++.+..+..+.+.+.. .+.+.++++. .+..+. ..|.. +|.+...
T Consensus 300 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~-~~~~~~~~~w~~-~p~~~~~ 377 (424)
T 2b9w_A 300 DNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHP-VEKIIEEQTWYY-FPHVSSE 377 (424)
T ss_dssp GGGSGGGTTSCCEEEECCTTCTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTCC-EEEEEEEEEEEE-EEECCHH
T ss_pred CCCCCcCCCcceEEeeecCCCCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCCc-ccccccccceee-eeccCHH
Confidence 22 11222332222222 2344455554444332220 1123445542 122222 25654 6666654
Q ss_pred HHHH--HHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhc
Q 035870 374 ASKA--SLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 374 ~~~~--~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il 417 (842)
.... ..++...++.+|+||||+|++.|++|+|+.||.++|++||
T Consensus 378 ~~~~G~~~~~~~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 378 DYKAGWYEKVEGMQGRRNTFYAGEIMSFGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp HHHTTHHHHHHHTTTGGGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHhCCCCceEeccccccccHHHHHHHHHHHHHHhc
Confidence 3332 4455556677899999999999999999999999999986
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=308.32 Aligned_cols=395 Identities=15% Similarity=0.181 Sum_probs=252.5
Q ss_pred cEEEECCChHHHHHHHHHHh-CCCeEEEEecCCCCCCCceeEe-eCCeeeecceEeecCCCchhHHHHHHHcCCCcccc-
Q 035870 2 RVAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYLGGHAKTVT-FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS- 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~-~G~~V~VlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~- 78 (842)
||||||||+|||+||++|++ .|++|+|||+++++||+++|.. .+|+.+|.|+|+|+ ..++.+.+++++++......
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~-~~~~~v~~l~~e~~~~~~~~~ 90 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF-SHYKYFDDCLDEALPKEDDWY 90 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCC-CCBHHHHHHHHHHSCSGGGEE
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEec-CCCHHHHHHHHHhCCccceeE
Confidence 79999999999999999997 5999999999999999999965 58999999999995 47889999999987764432
Q ss_pred c-ceeeEeccCCCceeeCCCCCCcchhhhhhccCChH-HHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 79 D-MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPY-FWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 79 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
. ......+.+|+.+.++....+. .+... .......+... .... ... .....++.+|+.+.
T Consensus 91 ~~~~~~~i~~~g~~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~-~~~--~~~~~s~~~~~~~~- 152 (513)
T 4gde_A 91 THQRISYVRCQGQWVPYPFQNNIS--------MLPKEEQVKCIDGMIDA------ALEA-RVA--NTKPKTFDEWIVRM- 152 (513)
T ss_dssp EEECCEEEEETTEEEESSGGGGGG--------GSCHHHHHHHHHHHHHH------HHHH-HTC--CSCCCSHHHHHHHH-
T ss_pred EecCceEEEECCeEeecchhhhhh--------hcchhhHHHHHHHHHHH------HHhh-hcc--cccccCHHHHHHHh-
Confidence 1 1122233455555543211111 11111 11111111111 1111 111 12578999999887
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccC---------CHHHHHH-HHhhcccc-ccCCCCceEEecCChhHHHHHHHHHh
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSF---------SAFSVLS-FCRNHHLL-QLFGRPQWLTVRWRSHSYVNKVRKQL 225 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~---------~~~~~~~-~~~~~~~~-~~~~~~~~~~~~gG~~~l~~~L~~~l 225 (842)
+++.+.+.++.|+..++|+.++++++.. +...... .+...... .......++.++||+++++++|++.+
T Consensus 153 ~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l 232 (513)
T 4gde_A 153 MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTL 232 (513)
T ss_dssp HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTS
T ss_pred hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHHH
Confidence 7888899999999999999999887432 1111111 11111111 11122344566899999999999999
Q ss_pred hhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeec-eEEEecCC
Q 035870 226 ESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYS-DIFLHRDK 304 (842)
Q Consensus 226 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~-~v~l~~~~ 304 (842)
++.|++|++|++|++|..++++ |++.+|+++.||+||+|+|...+.+++++ .....+...++|.+. .+.+.++.
T Consensus 233 ~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~l~~---~~~~~~~~~l~y~~~~~v~l~~~~ 307 (513)
T 4gde_A 233 PKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVDFLAEAMND---QELVGLTKQLFYSSTHVIGVGVRG 307 (513)
T ss_dssp CGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHHHHHHHTTC---HHHHHHHTTCCEEEEEEEEEEEES
T ss_pred HhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHHHHHHhcCc---hhhHhhhhcccCCceEEEEEEEec
Confidence 9999999999999999988774 56789999999999999999999999874 345666778899884 55565543
Q ss_pred CCc-----------CCCCCCc------ceeeecccCCCceEE-E-EEcc------------------------cccCCCC
Q 035870 305 RFM-----------PQNPAAW------SAWNFLESFDSKVCL-T-YWLN------------------------VLQNLGE 341 (842)
Q Consensus 305 ~~~-----------p~~~~~~------~~~~~~~~~~~~~~v-~-~~~~------------------------~l~~l~~ 341 (842)
... |+....+ ..|.....|++...+ + .+.. .+..+.+
T Consensus 308 ~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 387 (513)
T 4gde_A 308 SRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQ 387 (513)
T ss_dssp SCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCT
T ss_pred cccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhccCCCH
Confidence 211 1111111 111111112221111 0 1110 0111111
Q ss_pred C-----CCCeEEecCCCCCCcc----eeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCC----CchhHhH
Q 035870 342 T-----SLPFLVTLNPDHVPEH----TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGF----HEDGLKA 408 (842)
Q Consensus 342 ~-----~~~~~~~l~~~~~~~~----~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~----~e~A~~S 408 (842)
. ..+.+..+......+. .+.+|++++|+|+.++......+.+....+|||++|.+..+-+ ++.|++|
T Consensus 388 e~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~~~l~~~GR~g~~~Y~~~n~D~a~~~ 467 (513)
T 4gde_A 388 ETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFML 467 (513)
T ss_dssp TTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhhcCcEEecCCcccCcCCCCHHHHHHH
Confidence 1 0111222222222221 4568999999999999988877766222369999997554332 3889999
Q ss_pred HHHHHHHhcCCc
Q 035870 409 GMTAAHGVLGKS 420 (842)
Q Consensus 409 G~~aA~~Il~~~ 420 (842)
|+.||+.|+...
T Consensus 468 g~~aa~~I~~g~ 479 (513)
T 4gde_A 468 GVEAVDNIVNGA 479 (513)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC
Confidence 999999999643
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=305.66 Aligned_cols=398 Identities=19% Similarity=0.234 Sum_probs=255.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+||+|||||++||+||++|+++|++|+|||+++++||+++|...+|+.+|.|++++.. .++.+.++++++|+.......
T Consensus 14 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~lgl~~~~~~~ 92 (504)
T 1sez_A 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE-SEGDVTFLIDSLGLREKQQFP 92 (504)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC-CSHHHHHHHHHTTCGGGEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc-CcHHHHHHHHHcCCcccceec
Confidence 4899999999999999999999999999999999999999999999999999999953 678899999999997653211
Q ss_pred ---eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcC-CCCCCccccHHHHHHhcC
Q 035870 81 ---SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELES-NPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 81 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~l~~~~ 156 (842)
...+.+.+|+.+.++. ....+.. ...+... ..+.... . .+...... .....++.|+.+|++++
T Consensus 93 ~~~~~~~~~~~g~~~~~p~--~~~~~~~--~~~~~~~--~~~~~~~---~---~~~~~~~~~~~~~~~~~s~~~~l~~~- 159 (504)
T 1sez_A 93 LSQNKRYIARNGTPVLLPS--NPIDLIK--SNFLSTG--SKLQMLL---E---PILWKNKKLSQVSDSHESVSGFFQRH- 159 (504)
T ss_dssp SSCCCEEEESSSSEEECCS--SHHHHHH--SSSSCHH--HHHHHHT---H---HHHC----------CCCBHHHHHHHH-
T ss_pred cCCCceEEEECCeEEECCC--CHHHHhc--cccCCHH--HHHHHhH---h---hhccCcccccccCCCCccHHHHHHHH-
Confidence 1122334444433321 1101100 0111110 0010000 0 00000000 00012568999999987
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh-cc---------ccc---------------cCCCCceEEec
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN-HH---------LLQ---------------LFGRPQWLTVR 211 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~---------~~~---------------~~~~~~~~~~~ 211 (842)
+++.+.+.++.|++.++|+.++++++.......+..+.. .+ ... .......++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (504)
T 1sez_A 160 FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFL 239 (504)
T ss_dssp HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEET
T ss_pred cCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeC
Confidence 788889999999999999999988743221111111110 00 000 00123577899
Q ss_pred CChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc------EEEEeC--CC---cEEeCCEEEEccChHHHHHhhc---
Q 035870 212 WRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG------CTIVCG--DG---SREFYNSCVMALHAPDALKILG--- 277 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~------v~V~~~--~G---~~~~ad~VV~A~p~~~~~~ll~--- 277 (842)
||+++|+++|++.+.+ ++|++|++|++|..++++ +.|++. +| +++.||+||+|+|+..+.+++.
T Consensus 240 GG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~ 317 (504)
T 1sez_A 240 GGMQTLTDAICKDLRE--DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKR 317 (504)
T ss_dssp TCTHHHHHHHHTTSCT--TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESS
T ss_pred cHHHHHHHHHHhhccc--ceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhccc
Confidence 9999999999998831 799999999999998877 777664 45 5789999999999999999883
Q ss_pred -CCCChHHHHhccccceee-ceEEEecCCCCcCCCCC--------------------Ccceeeecc-cCCCceEEEEEcc
Q 035870 278 -NQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNPA--------------------AWSAWNFLE-SFDSKVCLTYWLN 334 (842)
Q Consensus 278 -~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~--------------------~~~~~~~~~-~~~~~~~v~~~~~ 334 (842)
++.++ +.+..+.|.+ .++++.++.+.|+.... .|.+..++. .|++..+++.++.
T Consensus 318 ~~~~~~---~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~ 394 (504)
T 1sez_A 318 GNPFLL---NFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVG 394 (504)
T ss_dssp SSBCCC---TTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEE
T ss_pred CCcccH---HHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeC
Confidence 11222 2267788877 57788888766543210 111112222 2455666666654
Q ss_pred ccc-----CCCCC-----CCCeEEec-CCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEeccccC-CC
Q 035870 335 VLQ-----NLGET-----SLPFLVTL-NPDHVPEH-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQG-YG 400 (842)
Q Consensus 335 ~l~-----~l~~~-----~~~~~~~l-~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~g-~G 400 (842)
... .+.+. +.+.+..+ +....|.. .+.+|...+|.|.+++......+.. .++.+||||||+++. .+
T Consensus 395 g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~ 474 (504)
T 1sez_A 395 GSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLS 474 (504)
T ss_dssp STTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSS
T ss_pred CCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCC
Confidence 211 11110 11112222 22223333 5669999999999988766555443 456789999999774 44
Q ss_pred CCchhHhHHHHHHHHhcC
Q 035870 401 FHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 401 ~~e~A~~SG~~aA~~Il~ 418 (842)
+ ++|+.||.++|++|+.
T Consensus 475 v-~gai~sG~~aA~~il~ 491 (504)
T 1sez_A 475 V-GKALSSGCNAADLVIS 491 (504)
T ss_dssp H-HHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHH
Confidence 5 9999999999999975
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=293.34 Aligned_cols=380 Identities=14% Similarity=0.133 Sum_probs=241.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecC-CCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR-VTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~-~~~~~~~~l~~~lGl~~~~~~ 79 (842)
|||+|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++.+ ...+.+.++++++|+......
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 80 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVN 80 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEE
Confidence 7999999999999999999999999999999999999999999999999999866533 245677899999998754332
Q ss_pred ce--eeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCC
Q 035870 80 MS--FSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGY 157 (842)
Q Consensus 80 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (842)
.. ..+. .+|+.+.++.. ...+.+. ....+.++.... ... ... .++.++.+|+.+.++
T Consensus 81 ~~~~~~~~-~~g~~~~~~~~----------~~~l~~~---~~~~~~~~~~~~----~~~-~~~--~~~~s~~~~l~~~g~ 139 (421)
T 3nrn_A 81 SNPKGKIL-WEGKIFHYRES----------WKFLSVK---EKAKALKLLAEI----RMN-KLP--KEEIPADEWIKEKIG 139 (421)
T ss_dssp CSSSCEEE-ETTEEEEGGGG----------GGGCC-----------CCHHHH----HTT-CCC--CCCSBHHHHHHHHTC
T ss_pred CCCCeEEE-ECCEEEEcCCc----------hhhCCHh---HHHHHHHHHHHH----Hhc-cCC--CCCCCHHHHHHHhcC
Confidence 11 1122 24443333221 1111111 001111111000 000 111 145899999999867
Q ss_pred CHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCC
Q 035870 158 SELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237 (842)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~ 237 (842)
++...+.++.|+....++.++.++ ++..+...+.... ....+++++||++.++++|++.++++|++|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~ 211 (421)
T 3nrn_A 140 ENEFLLSVLESFAGWADSVSLSDL---TALELAKEIRAAL-----RWGGPGLIRGGCKAVIDELERIIMENKGKILTRKE 211 (421)
T ss_dssp CCHHHHHHHHHHHHHHHSSCGGGS---BHHHHHHHHHHHH-----HHCSCEEETTCHHHHHHHHHHHHHTTTCEEESSCC
T ss_pred CcHHHHHHHHHHHHHhcCCCcccC---CHHHHHHHHHHHh-----hcCCcceecCCHHHHHHHHHHHHHHCCCEEEcCCe
Confidence 777778888999999999988887 4433333222110 01345689999999999999999999999999999
Q ss_pred eeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhc-CCCChHHHHhccccceee-ceEEEecCCCCcCC------
Q 035870 238 VCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILG-NQATFDETRILGAFQYVY-SDIFLHRDKRFMPQ------ 309 (842)
Q Consensus 238 V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~-~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~------ 309 (842)
|++|..++++| | +.+|+++.||+||+|+|++.+.++++ +..++...+.+.++.+.+ .++.+.++.+..+.
T Consensus 212 V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~ 289 (421)
T 3nrn_A 212 VVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTIVFT 289 (421)
T ss_dssp EEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSSCSSEEEC
T ss_pred EEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCcccCCeEEEc
Confidence 99999998888 6 45677899999999999999999997 335556677788888876 46677776653322
Q ss_pred -CCC----Ccce-eeecccCCCceEEEEEc--cccc--CCCCCCCCeEEecCCCCCCcc-eeEEEEcCCCCCCHHHHHHH
Q 035870 310 -NPA----AWSA-WNFLESFDSKVCLTYWL--NVLQ--NLGETSLPFLVTLNPDHVPEH-TLLKWSTGHPVPSVAASKAS 378 (842)
Q Consensus 310 -~~~----~~~~-~~~~~~~~~~~~v~~~~--~~l~--~l~~~~~~~~~~l~~~~~~~~-~~~~w~~~~p~~~~~~~~~~ 378 (842)
+.. .+.+ +.-...|++...+.... .... ++.+...+.+..+.| .... .+.+|...+|.+......
T Consensus 290 ~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p--~~~~~~~~~~~~~~p~~~~~~~~-- 365 (421)
T 3nrn_A 290 PGLMINGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFP--EGEPLLAQVYRDGNPVNRTRAGL-- 365 (421)
T ss_dssp TTSSSCEEECGGGTCGGGSCTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHCT--TCEEEEEEEC---------------
T ss_pred CCcceeeEeccCCCCCCcCCCCceEEEEEEeeccccHHHHHHHHHHHHHHHcC--CCeEEEeeeccCCCCcccccCCC--
Confidence 111 0111 00011245555444322 1110 111111222333344 2222 456788888888543322
Q ss_pred HhhhhhcCCCCeEEeccccCCC-CC--chhHhHHHHHHHHhcCC
Q 035870 379 LELDHIQGKRGIWFCGAYQGYG-FH--EDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 379 ~~~~~~~~~~~l~~aG~~~g~G-~~--e~A~~SG~~aA~~Il~~ 419 (842)
.+. .++ +|||+||||+..+ .. |+|+.||++||++| |.
T Consensus 366 -~~~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l-~~ 405 (421)
T 3nrn_A 366 -HIE-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL-NL 405 (421)
T ss_dssp -CCC-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT-TS
T ss_pred -CCC-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh-Cc
Confidence 233 566 9999999987444 34 99999999999999 53
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=292.08 Aligned_cols=398 Identities=16% Similarity=0.129 Sum_probs=251.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+||+|||||++||+||++|+++|++|+|||+++++||+++|...+|+.+|.|+++++. .++.+.++++++|+.......
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 84 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP-DQTALISLLDELGLKTFERYR 84 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCT-TCHHHHHHHHHTTCCEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecC-ccHHHHHHHHHcCCccccccc
Confidence 3899999999999999999999999999999999999999999999999999999864 477888999999998654321
Q ss_pred e-eeEeccC-CCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHh--hcCCCC--CCccccHHHHHHh
Q 035870 81 S-FSVSLEK-GHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEE--LESNPD--IDRSETLGQFVNS 154 (842)
Q Consensus 81 ~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~s~~~~l~~ 154 (842)
. ..+.+.+ ++.+.+.+... . +.+.....+................ ....+. ..+..|+.+|+.+
T Consensus 85 ~~~~~~~~~~g~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 154 (453)
T 2yg5_A 85 EGESVYISSAGERTRYTGDSF--P--------TNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLIN 154 (453)
T ss_dssp CSEEEEECTTSCEEEECSSSC--S--------CCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHH
T ss_pred CCCEEEEeCCCceeeccCCCC--C--------CChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHh
Confidence 1 1222222 44444433110 0 0111000111111100011111100 000000 0146899999999
Q ss_pred cCCCHHHHHHHHHHhhhcccCCCch-hhccCCHHHHHHHHhhcccc-cc--CCCCceEEecCChhHHHHHHHHHhhhcCc
Q 035870 155 RGYSELFQKAYLIPICGSIWSCPSE-GVTSFSAFSVLSFCRNHHLL-QL--FGRPQWLTVRWRSHSYVNKVRKQLESWGC 230 (842)
Q Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~gG~~~l~~~L~~~l~~~G~ 230 (842)
.+.++.+ ..++.+++...++.+++ ++ |+..++.++...+.. .. .....+++++||++.++++|++.+ |+
T Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~ 227 (453)
T 2yg5_A 155 QSDDAEA-RDNIGLFIAGGMLTKPAHSF---SALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL---GD 227 (453)
T ss_dssp HCSCHHH-HHHHHHHHCCCCCCSCTTSS---BHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHH---GG
T ss_pred hcCCHHH-HHHHHHHHHhhcccCCcccc---cHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhc---CC
Confidence 8766654 45788888888888877 66 566665555432100 00 011246889999999999999988 78
Q ss_pred eEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHHHHHhh-cCCCChHHHHhccccceee-ceEEEecCCCCc
Q 035870 231 QIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPDALKIL-GNQATFDETRILGAFQYVY-SDIFLHRDKRFM 307 (842)
Q Consensus 231 ~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~ 307 (842)
+|++|++|++|..++++ |.|++ +|+++.||+||+|+|+.++.+++ .+.+++...++++++++.+ .++++.++.++|
T Consensus 228 ~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w 306 (453)
T 2yg5_A 228 DVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306 (453)
T ss_dssp GEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGSEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGG
T ss_pred cEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcCEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCC
Confidence 99999999999999888 88887 67789999999999999988875 3446677788889999888 688899998877
Q ss_pred CCCCC--------Ccceeeecc-cCCC-ceEEEEEccc-----ccCCCC-----CCCCeEEecCCCC--CCcc-eeEEEE
Q 035870 308 PQNPA--------AWSAWNFLE-SFDS-KVCLTYWLNV-----LQNLGE-----TSLPFLVTLNPDH--VPEH-TLLKWS 364 (842)
Q Consensus 308 p~~~~--------~~~~~~~~~-~~~~-~~~v~~~~~~-----l~~l~~-----~~~~~~~~l~~~~--~~~~-~~~~w~ 364 (842)
+.... .+..+.+.. .+++ ..++..++.. +..+.+ .+.+.+..+.+.. .|.. ...+|.
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~ 386 (453)
T 2yg5_A 307 REDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWG 386 (453)
T ss_dssp GGGTEEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTT
T ss_pred CCCCCCceeecCCCCeEEEEeCCCCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCCCccEEEEeecC
Confidence 54310 011122222 2222 3445444421 111111 1111111222211 2222 334664
Q ss_pred c---CC----CCCCHHHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcC
Q 035870 365 T---GH----PVPSVAASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 365 ~---~~----p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~ 418 (842)
. .. +.+.++...... ....++.+||||||+++ +.|.+++|+.||+++|++|+.
T Consensus 387 ~~~~~~G~~~~~~~~g~~~~~~-~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~ 449 (453)
T 2yg5_A 387 SEEWTRGCYAASFDLGGLHRYG-ADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIA 449 (453)
T ss_dssp TCTTTCSSSCEEECTTHHHHHG-GGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCCCCccccch-HHHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHH
Confidence 2 21 233444332211 12255779999999976 456569999999999999974
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=268.52 Aligned_cols=243 Identities=16% Similarity=0.229 Sum_probs=190.6
Q ss_pred HhhhhhhhhhcCChHHHHhccCCCCcccccccCCCc--ccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHH
Q 035870 572 QARRNISRHYDLSNELFSLFLDESMTYSCAVFKSED--EDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVK 649 (842)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~--~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~ 649 (842)
.+.+++++|||..+++|+.++++.++ ++||.... .++.+++.+..+.+++.+.+.++.+|||||||+|.++..+++
T Consensus 4 p~~~~~~~~Yd~~~~~y~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 81 (273)
T 3bus_A 4 PTPEEVRQMYDDFTDPFARIWGENLH--FGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLAT 81 (273)
T ss_dssp -------------------CCGGGCC--CCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHH
T ss_pred CcHHHHHHHHcchHHHHHHHcCCCce--EEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHH
Confidence 45778999999999999999998764 58997766 689999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC
Q 035870 650 RTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 650 ~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
..+++|+|+|+|+.+++.|++++...++.++++++++|+.+++ ++++||+|+++.+++|+++ ...++++++++||||
T Consensus 82 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pg 159 (273)
T 3bus_A 82 ARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD--RGRALREMARVLRPG 159 (273)
T ss_dssp HSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSC--HHHHHHHHHTTEEEE
T ss_pred hcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCC--HHHHHHHHHHHcCCC
Confidence 7789999999999999999999999998889999999999987 6689999999999999977 789999999999999
Q ss_pred cEEEEEeecCCCcccccccCccchhhh--cccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhH
Q 035870 729 GLLVLQFISIPDERYNEYRLSSDFIKE--YIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQ 806 (842)
Q Consensus 729 G~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~ 806 (842)
|++++.++........... ..+.. ..+++..+++..++.+.+++ +||+++.++.++.+|..++..|.+++.+++
T Consensus 160 G~l~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (273)
T 3bus_A 160 GTVAIADFVLLAPVEGAKK---EAVDAFRAGGGVLSLGGIDEYESDVRQ-AELVVTSTVDISAQARPSLVKTAEAFENAR 235 (273)
T ss_dssp EEEEEEEEEESSCCCHHHH---HHHHHHHHHHTCCCCCCHHHHHHHHHH-TTCEEEEEEECHHHHTTHHHHHHHHHHHTH
T ss_pred eEEEEEEeeccCCCChhHH---HHHHHHHhhcCccCCCCHHHHHHHHHH-cCCeEEEEEECcHhHHHHHHHHHHHHHHhH
Confidence 9999988765433221111 11111 23567788999999988887 899999999999999999999999999988
Q ss_pred HHHHhccCCHHHHHHHH
Q 035870 807 SKILALGFNDKFIRTWE 823 (842)
Q Consensus 807 ~~~~~~g~~~~~~r~w~ 823 (842)
+++... +++.+.++|.
T Consensus 236 ~~~~~~-~~~~~~~~~~ 251 (273)
T 3bus_A 236 SQVEPF-MGAEGLDRMI 251 (273)
T ss_dssp HHHHHH-HCHHHHHHHH
T ss_pred HHHHhh-cCHHHHHHHH
Confidence 887765 5666555443
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=287.87 Aligned_cols=285 Identities=18% Similarity=0.187 Sum_probs=153.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc---
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM--- 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~--- 77 (842)
|+|||||||++||+||++|+++|++|+||||++++||+++|++.+|+.+|.|++++. ....+.++++.+|.....
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~--~~~~~~~l~~~~g~~~~~~~~ 79 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVIT--DPSAIEELFALAGKQLKEYVE 79 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBS--CTHHHHHHHHTTTCCGGGTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeec--CchhHHHHHHHhcchhhhcee
Confidence 799999999999999999999999999999999999999999999999999999984 223445788888755332
Q ss_pred ---ccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCC---------------
Q 035870 78 ---SDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESN--------------- 139 (842)
Q Consensus 78 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 139 (842)
.+..+.+.+.+|..+.+.. ............ .+.- ...+.++..............
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~-~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (501)
T 4dgk_A 80 LLPVTPFYRLCWESGKVFNYDN--DQTRLEAQIQQF-NPRD---VEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRA 153 (501)
T ss_dssp EEEESSSEEEEETTSCEEEECS--CHHHHHHHHHHH-CTHH---HHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHS
T ss_pred eEecCcceEEEcCCCCEEEeec--cHHHHHHHHhhc-Cccc---cchhhhHHHHHHHhhhhhhhhccccccchhhhhhhh
Confidence 2223344556666555432 111111111111 1111 111111111111111110000
Q ss_pred ----CCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChh
Q 035870 140 ----PDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSH 215 (842)
Q Consensus 140 ----~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 215 (842)
.......++.+++.+....+.+. .++.. ....++.++...+ +...++.++. ...+.++++||++
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~g~~p~~~~--~~~~~~~~~~--------~~~G~~~p~GG~~ 221 (501)
T 4dgk_A 154 APQLAKLQAWRSVYSKVASYIEDEHLR-QAFSF-HSLLVGGNPFATS--SIYTLIHALE--------REWGVWFPRGGTG 221 (501)
T ss_dssp GGGTTTSHHHHHHHHHHHTTCCCHHHH-HHHHH-HHHHHHSCC--CC--CTHHHHHHHH--------SCCCEEEETTHHH
T ss_pred hhhhhhhhhcccHHHHHHHHhccHHHH-hhhhh-hhcccCCCcchhh--hhhhhhhhhh--------ccCCeEEeCCCCc
Confidence 00001124455555553333332 22211 1122333333221 2222232222 1234668999999
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHHHH-HhhcCCC-ChHHHHhccccc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPDAL-KILGNQA-TFDETRILGAFQ 292 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~~~-~ll~~~~-~~~~~~~l~~~~ 292 (842)
+++++|++.++++|++|++|++|++|..+++++ .|++++|+++.||+||++++++.+. .|+++.+ +....+.+.+.+
T Consensus 222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 301 (501)
T 4dgk_A 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKR 301 (501)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--------------------------
T ss_pred chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhhhhhccc
Confidence 999999999999999999999999999999987 5999999999999999999877665 4555432 233345566666
Q ss_pred eeec--eEEEecCCC
Q 035870 293 YVYS--DIFLHRDKR 305 (842)
Q Consensus 293 ~~~~--~v~l~~~~~ 305 (842)
++.. .+++..+..
T Consensus 302 ~~~s~~~~~~~l~~~ 316 (501)
T 4dgk_A 302 MSNSLFVLYFGLNHH 316 (501)
T ss_dssp -CCEEEEEEEEESSC
T ss_pred cCCceeEEEecccCC
Confidence 6553 445555543
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=280.75 Aligned_cols=389 Identities=14% Similarity=0.153 Sum_probs=253.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-CeEEEEecCCCCCCCceeE-eeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKTV-TFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||++||+||++|+++| .+|+|+|+++++||+++|. ..+|+.+|.|++++.. .++.+.+++++++ +....
T Consensus 10 ~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~-~~~~~~~l~~~~~-~~~~~ 87 (484)
T 4dsg_A 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS-HYQYFDDVMDWAV-QGWNV 87 (484)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC-SBHHHHHHHHHHC-SCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc-ChHHHHHHHHHHh-hhhhh
Confidence 48999999999999999999998 7999999999999999996 6689999999999954 6788889999975 21111
Q ss_pred cceeeEeccCCCceeeCCCCCCcchhhhhhccCChH-HHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCC
Q 035870 79 DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPY-FWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGY 157 (842)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (842)
.......+.+|+.+.++....+. .+... ....+..+++. . . . ....++.++++|+.++ +
T Consensus 88 ~~~~~~~~~~g~~~~~P~~~~~~--------~l~~~~~~~~~~~ll~~--------~-~-~-~~~~~~~s~~e~~~~~-~ 147 (484)
T 4dsg_A 88 LQRESWVWVRGRWVPYPFQNNIH--------RLPEQDRKRCLDELVRS--------H-A-R-TYTEPPNNFEESFTRQ-F 147 (484)
T ss_dssp EECCCEEEETTEEEESSGGGCGG--------GSCHHHHHHHHHHHHHH--------H-H-C-CCSSCCSSHHHHHHHH-H
T ss_pred ccCceEEEECCEEEEeCccchhh--------hCCHHHHHHHHHHHHHH--------H-h-c-cCCCCCCCHHHHHHHH-h
Confidence 11112223455555443111111 11111 11122222211 0 0 1 1123688999999988 7
Q ss_pred CHHHHHHHHHHhhhcccCCCchhhccCC---------HHHHHH-HHhhccccccCCCCceE-EecCChhHHHHHHHHHhh
Q 035870 158 SELFQKAYLIPICGSIWSCPSEGVTSFS---------AFSVLS-FCRNHHLLQLFGRPQWL-TVRWRSHSYVNKVRKQLE 226 (842)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~L~~~l~ 226 (842)
++.+.+.++.|++.++|+.++++++... ...++. .+....-.+......+. ..+||+++++++|++.+.
T Consensus 148 g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~ 227 (484)
T 4dsg_A 148 GEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLP 227 (484)
T ss_dssp HHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhh
Confidence 8888889999999999999999985422 112211 11111100000112233 456999999999999995
Q ss_pred hcCceEEeC--CCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcC---CCChHHHHhccccceee-ceEEE
Q 035870 227 SWGCQIRTS--SEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGN---QATFDETRILGAFQYVY-SDIFL 300 (842)
Q Consensus 227 ~~G~~i~~~--~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~---~~~~~~~~~l~~~~~~~-~~v~l 300 (842)
+ .+|+++ ++|++|..++++| ++.+|+++.||+||+|+|++.+.+++.+ .+++...+.+.+++|.+ .++.+
T Consensus 228 ~--~~i~~~~~~~V~~I~~~~~~v--~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l 303 (484)
T 4dsg_A 228 S--EKLTFNSGFQAIAIDADAKTI--TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGI 303 (484)
T ss_dssp G--GGEEECGGGCEEEEETTTTEE--EETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEE
T ss_pred h--CeEEECCCceeEEEEecCCEE--EECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEE
Confidence 4 289999 5699999988865 4578888999999999999999999864 25566778889999998 46667
Q ss_pred ecCCCC-----------cCCCCC------CcceeeecccCCCceEEEEEccc--ccCCCCC-----CCCeEEecCCCCCC
Q 035870 301 HRDKRF-----------MPQNPA------AWSAWNFLESFDSKVCLTYWLNV--LQNLGET-----SLPFLVTLNPDHVP 356 (842)
Q Consensus 301 ~~~~~~-----------~p~~~~------~~~~~~~~~~~~~~~~v~~~~~~--l~~l~~~-----~~~~~~~l~~~~~~ 356 (842)
.++.+. +|+... .+++|.....|+++..+...... ...+.+. ..+.+..+....+.
T Consensus 304 ~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~~~~~~~ 383 (484)
T 4dsg_A 304 GVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLASNLLLPE 383 (484)
T ss_dssp EEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHTTSCCTT
T ss_pred EEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHcCCCCcc
Confidence 776542 132221 11222212234555555433221 1111111 11112223222111
Q ss_pred cc----eeEEEEcCCCCCCHHHHHHHHhhhh-hcCCCCeEEeccccC-----CCCCchhHhHHHHHHHHhc
Q 035870 357 EH----TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCGAYQG-----YGFHEDGLKAGMTAAHGVL 417 (842)
Q Consensus 357 ~~----~~~~w~~~~p~~~~~~~~~~~~~~~-~~~~~~l~~aG~~~g-----~G~~e~A~~SG~~aA~~Il 417 (842)
+. .+.+|..++|+|++++......+.+ .... ||+++|.+.. .+. +.|+.||.++|+.|+
T Consensus 384 ~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~-d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 384 DLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWRYEVGNQ-DHSFMQGVEAIDHVL 452 (484)
T ss_dssp CCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCCGGGCSH-HHHHHHHHHHHHHHT
T ss_pred ceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccccCCCCh-HHHHHHHHHHHHHHH
Confidence 22 4569999999999999988877776 3334 9999999543 344 999999999999999
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=279.22 Aligned_cols=393 Identities=16% Similarity=0.162 Sum_probs=243.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC---CeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD---GVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~---g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
+||+|||||++||+||++|+++|++|+|||+++++||++.+.+.+ |..++.|+++++...++++.++++++|++...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAA 81 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeee
Confidence 389999999999999999999999999999999999999998887 99999999999654378888999999998665
Q ss_pred ccceeeEec--cCCCceeeCCCCCCcchhhhhhccCChHHHHHH-HHHHhhhHHHHHHHHh-hc--CCCCCCccccHHHH
Q 035870 78 SDMSFSVSL--EKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML-REIIKFKDDVLGYLEE-LE--SNPDIDRSETLGQF 151 (842)
Q Consensus 78 ~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~s~~~~ 151 (842)
........+ .++.. .. .++ ........+ ..+.++.......... .. ......+ .++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~-~~--------~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d-~s~~~~ 146 (431)
T 3k7m_X 82 ASEFTSFRHRLGPTAV-DQ--------AFP-----IPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLD-IPLNEY 146 (431)
T ss_dssp CCCCCEECCBSCTTCC-SS--------SSC-----CCGGGHHHHHHHHHHHHHHHTTCCTTTCTTSSSCGGGC-SBHHHH
T ss_pred cCCCCcEEEEecCCee-cC--------CCC-----CCHHHHHHHHHHHHHHHHHHHhcCCCCCccCcchhhhc-CCHHHH
Confidence 433322222 11111 00 000 000101111 1111111111000000 00 0001113 889999
Q ss_pred HHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhcc--ccccCCCCceEEecCChhHHHHHHHHHhhhcC
Q 035870 152 VNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHH--LLQLFGRPQWLTVRWRSHSYVNKVRKQLESWG 229 (842)
Q Consensus 152 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G 229 (842)
+...+..+.. ..++.++....++.++.++ ++..++.++...+ .......... .+.+|+..+++.+++.+ |
T Consensus 147 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~~~~---g 218 (431)
T 3k7m_X 147 VDKLDLPPVS-RQFLLAWAWNMLGQPADQA---SALWMLQLVAAHHYSILGVVLSLDE-VFSNGSADLVDAMSQEI---P 218 (431)
T ss_dssp HHHHTCCHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHHTTSCHHHHHHTCCE-EETTCTHHHHHHHHTTC---S
T ss_pred HHhcCCCHHH-HHHHHHHHHHhcCCChhhh---hHHHHHHHHHhcCCccceeecchhh-hcCCcHHHHHHHHHhhC---C
Confidence 9988776654 3456677777888877765 6666655554321 0000111223 78999999999988765 7
Q ss_pred ceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh-hcCCCChHHHHhccccceee-ceEEEecCCCCc
Q 035870 230 CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI-LGNQATFDETRILGAFQYVY-SDIFLHRDKRFM 307 (842)
Q Consensus 230 ~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l-l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~ 307 (842)
+|++|++|++|+.++++|.|++.+|+++.||+||+|+|+..+.++ +.|+++....+++..+.+.. .++.+.+++++.
T Consensus 219 -~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~ 297 (431)
T 3k7m_X 219 -EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEA 297 (431)
T ss_dssp -CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCT
T ss_pred -ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCCc
Confidence 999999999999999999999999988999999999999998887 35556777778888877777 688888887652
Q ss_pred CC--CCCCcce--eeecccCCCceEEEEEcccccCCCCC----CCCeEEecCCCCCCcc-eeEEEEc------CCCCCCH
Q 035870 308 PQ--NPAAWSA--WNFLESFDSKVCLTYWLNVLQNLGET----SLPFLVTLNPDHVPEH-TLLKWST------GHPVPSV 372 (842)
Q Consensus 308 p~--~~~~~~~--~~~~~~~~~~~~v~~~~~~l~~l~~~----~~~~~~~l~~~~~~~~-~~~~w~~------~~p~~~~ 372 (842)
.- ....+.. +.+.....+...+..+..... +... +.+.+..+.|...+.. ...+|.. +++.+.+
T Consensus 298 ~i~~~~d~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~d~~~~G~~~~~~~ 376 (431)
T 3k7m_X 298 GIECVGDGIFPTLYDYCEVSESERLLVAFTDSGS-FDPTDIGAVKDAVLYYLPEVEVLGIDYHDWIADPLFEGPWVAPRV 376 (431)
T ss_dssp TEEEEBSSSSSEEEEEEECSSSEEEEEEEEETTT-CCTTCHHHHHHHHHHHCTTCEEEEEECCCTTTCTTTSSSSCCCCT
T ss_pred CceEcCCCCEEEEEeCcCCCCCCeEEEEEecccc-CCCCCHHHHHHHHHHhcCCCCccEeEecccCCCCCCCCCCCCcCC
Confidence 10 0011111 222222133334433332211 1111 1223334444332222 3346743 2333333
Q ss_pred HHHHHHHhhhhhcCCCCeEEecccc---CCCCCchhHhHHHHHHHHhcCC
Q 035870 373 AASKASLELDHIQGKRGIWFCGAYQ---GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~aG~~~---g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
+.... ....-.+|.++|||||+.+ ..|+++||+.||+++|++||-.
T Consensus 377 g~~~~-~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 377 GQFSR-VHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp TTTTT-SSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred CCCcc-cHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence 32111 0111145678999999854 5677799999999999999854
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=252.51 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=212.3
Q ss_pred CchHHhhhhhhhhhcCC--hHHHHh-ccCCCCcccccccCCC--cccHHHHHHHHHHHHHHHc----CCCCCCeEEEecc
Q 035870 568 NTLTQARRNISRHYDLS--NELFSL-FLDESMTYSCAVFKSE--DEDLKAAQMRKVSLLIEKA----RVSKGQEVLEIGC 638 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~--~~~~~~-~l~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l----~~~~~~~vLDiGc 638 (842)
++...+.+++..|||.. ++||+. |.+++++| ++|... ...+.+++.+..+.+++.+ .+.++.+||||||
T Consensus 14 ~~~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGc 91 (297)
T 2o57_A 14 ATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGA 91 (297)
T ss_dssp --CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETC
T ss_pred hhHHHHHHHHHHHcCCccchhHHHHHhCCCceEE--EecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCC
Confidence 34566778999999987 499975 44677654 899887 8899999999999999999 8899999999999
Q ss_pred CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHH
Q 035870 639 GWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEF 717 (842)
Q Consensus 639 G~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~ 717 (842)
|+|.++..+++..+++|+|+|+|+.+++.|++++...++.++++++++|+.+++ ++++||+|++..+++|+++ +..+
T Consensus 92 G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~ 169 (297)
T 2o57_A 92 GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD--KLKV 169 (297)
T ss_dssp TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC--HHHH
T ss_pred CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCC--HHHH
Confidence 999999999988788999999999999999999999998889999999999988 6789999999999999987 8999
Q ss_pred HHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC----ccHHH
Q 035870 718 FGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG----IHYYQ 793 (842)
Q Consensus 718 ~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~----~~y~~ 793 (842)
+++++++|||||++++.++......... ....+...+.+| .+++..++.+.+.+ +||+++.++++. .+|..
T Consensus 170 l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~l~~-aGf~~~~~~~~~~~~~~~~~~ 244 (297)
T 2o57_A 170 FQECARVLKPRGVMAITDPMKEDGIDKS--SIQPILDRIKLH--DMGSLGLYRSLAKE-CGLVTLRTFSRPDSLVHHYSK 244 (297)
T ss_dssp HHHHHHHEEEEEEEEEEEEEECTTCCGG--GGHHHHHHHTCS--SCCCHHHHHHHHHH-TTEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEeccCCCCchH--HHHHHHHHhcCC--CCCCHHHHHHHHHH-CCCeEEEEEECchhhHHHHHH
Confidence 9999999999999999987655432211 122334444443 36688899888887 899999998865 45666
Q ss_pred HHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccc
Q 035870 794 TLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGN 840 (842)
Q Consensus 794 tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~ 840 (842)
++..|.++ .+++.. .+++.+.++|..++..|..+++.|.+..
T Consensus 245 ~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 286 (297)
T 2o57_A 245 VKAELIKR----SSEIAS-FCSPEFQANMKRGLEHWIEGGRAGKLTW 286 (297)
T ss_dssp HHHHHHHT----HHHHTT-TSCHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh----HHHHhc-cCCHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 66666554 344444 4789999999999999999998887654
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=282.33 Aligned_cols=276 Identities=16% Similarity=0.113 Sum_probs=179.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-CeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||+|||+||++|+++| ++|+|||+++++|||++|... +|+.+|.|+++++......+.+++.++|+.....
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~~~ 88 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDGRT 88 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHCCC
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCcce
Confidence 48999999999999999999999 999999999999999999987 8999999999997543445667777777632211
Q ss_pred cceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhc---
Q 035870 79 DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSR--- 155 (842)
Q Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~--- 155 (842)
...+.++..+.+..... .+.. .....+......+.++... ........++.|+.+|+.+.
T Consensus 89 ----~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~s~~~~l~~~l~~ 151 (516)
T 1rsg_A 89 ----RFVFDDDNFIYIDEERG--RVDH----DKELLLEIVDNEMSKFAEL-------EFHQHLGVSDCSFFQLVMKYLLQ 151 (516)
T ss_dssp ----CEECCCCCCEEEETTTE--ECTT----CTTTCHHHHHHHHHHHHHH-------HC-------CCBHHHHHHHHHHH
T ss_pred ----eEEECCCCEEEEcCCCc--cccc----cHHHHHHHHHHHHHHHHHH-------HhhhccCCCCCCHHHHHHHHHHH
Confidence 12233444333322110 0000 0111122222222222111 11100112567888887642
Q ss_pred ---CCCHHHHHHHHHHhh---hcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcC
Q 035870 156 ---GYSELFQKAYLIPIC---GSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWG 229 (842)
Q Consensus 156 ---~~~~~~~~~~~~p~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G 229 (842)
.+.+.. ..++.+++ ...++.+++.+ ++..++ .. ..+...+++| ++.++++|++.++ +
T Consensus 152 ~~~~l~~~~-~~~~~~~~~~~~~~~g~~~~~~---s~~~~~---~~-------~~~~~~~~~g-~~~l~~~l~~~l~--~ 214 (516)
T 1rsg_A 152 RRQFLTNDQ-IRYLPQLCRYLELWHGLDWKLL---SAKDTY---FG-------HQGRNAFALN-YDSVVQRIAQSFP--Q 214 (516)
T ss_dssp HGGGSCHHH-HHHHHHHHGGGHHHHTBCTTTS---BHHHHC---CC-------CSSCCEEESC-HHHHHHHHHTTSC--G
T ss_pred hhcccCHHH-HHHHHHHHHHHHHHhCCChHHC---ChHHHH---hh-------ccCcchhhhC-HHHHHHHHHHhCC--C
Confidence 122211 11222222 12234444333 333221 10 1122345677 9999999999886 3
Q ss_pred ceEEeCCCeeEEEeC-CCcEEEEeCCCcEEeCCEEEEccChHHHHHh------------hcCCCChHHHHhccccceee-
Q 035870 230 CQIRTSSEVCSVLPA-DKGCTIVCGDGSREFYNSCVMALHAPDALKI------------LGNQATFDETRILGAFQYVY- 295 (842)
Q Consensus 230 ~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l------------l~~~~~~~~~~~l~~~~~~~- 295 (842)
++|++|++|++|..+ +++|.|++.+|+++.||+||+|+|+..+... +.|++++...+++++++|.+
T Consensus 215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~ 294 (516)
T 1rsg_A 215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGAL 294 (516)
T ss_dssp GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCC
T ss_pred CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcc
Confidence 689999999999986 6679999999988999999999999998642 23447788899999999999
Q ss_pred ceEEEecCCCCcCCC
Q 035870 296 SDIFLHRDKRFMPQN 310 (842)
Q Consensus 296 ~~v~l~~~~~~~p~~ 310 (842)
.++++.|+.++|+..
T Consensus 295 ~Kv~l~f~~~fW~~~ 309 (516)
T 1rsg_A 295 GKVIFEFEECCWSNE 309 (516)
T ss_dssp EEEEEEESSCCSCCS
T ss_pred eEEEEEeCCCCCCCC
Confidence 699999999999764
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=279.18 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=177.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-----------------CCeeeecceEeecCCCchh
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-----------------DGVDLDLGFMVFNRVTYPN 63 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-----------------~g~~~d~G~~~~~~~~~~~ 63 (842)
+||+|||||++||+||++|+++|++|+|||+++++||+++|.+. +|..+|.|++++.. .+ .
T Consensus 12 ~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-~ 89 (489)
T 2jae_A 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQ-SH-I 89 (489)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEET-TS-T
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhccc-HH-H
Confidence 58999999999999999999999999999999999999998875 57889999998854 44 8
Q ss_pred HHHHHHHcCCCcccccce--eeEec-cCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 035870 64 MMEFFESLGVDMEMSDMS--FSVSL-EKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNP 140 (842)
Q Consensus 64 ~~~l~~~lGl~~~~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (842)
+.++++++|+........ ....+ .++. .|.+ ... ...... ..++..+.++.+..... .......
T Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~-~~~~~~-----~~~~~~~~~l~~~~~~~----~~~~~~~ 156 (489)
T 2jae_A 90 TLDYCRELGVEIQGFGNQNANTFVNYQSDT--SLSG-QSV-TYRAAK-----ADTFGYMSELLKKATDQ----GALDQVL 156 (489)
T ss_dssp HHHHHHHHTCCEEEECCCCTTSEEECCCSS--TTTT-CCE-EHHHHH-----HHHHHHHHHHHHHHHHH----TTTTTTS
T ss_pred HHHHHHHcCCceEEccccCCCceEEecCCc--ccCC-ccc-cHHHHh-----hhhhccHHHHHHHHHhc----ccccccc
Confidence 889999999986543211 01111 1100 0101 000 010000 01111112221111000 0000000
Q ss_pred CCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCC------------chhhccCCHHHHHHHHhhccccccCCCCceE
Q 035870 141 DIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCP------------SEGVTSFSAFSVLSFCRNHHLLQLFGRPQWL 208 (842)
Q Consensus 141 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (842)
...++.++.+|+.+. ++...+..+.+.....|..+ +.++..++...+..++... ........++
T Consensus 157 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 232 (489)
T 2jae_A 157 SREDKDALSEFLSDF--GDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFD--FGYDQAMMMF 232 (489)
T ss_dssp CHHHHHHHHHHHHHH--TTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGG--GCTTTSSSEE
T ss_pred chhhHHHHHHHHHHh--hhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhh--hccccCccEE
Confidence 001344777777751 11000000011111111111 1111111111111122211 1122346789
Q ss_pred EecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccChHHHHHhhcCCCChHHH
Q 035870 209 TVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHAPDALKILGNQATFDET 285 (842)
Q Consensus 209 ~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~ 285 (842)
+++||++.|+++|++.+.+ ++|++|++|++|..++++|.|++.+| +++.||+||+|+|+..+.++.. .+++.+.
T Consensus 233 ~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~-~l~~~~~ 309 (489)
T 2jae_A 233 TPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRLQN-NLPGDVL 309 (489)
T ss_dssp EETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTTSEE-CCCHHHH
T ss_pred eecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHhCcc-CCCHHHH
Confidence 9999999999999999942 78999999999999999999998876 5799999999999998888776 4777888
Q ss_pred Hhccccceee-ceEEEecCCCCcCC
Q 035870 286 RILGAFQYVY-SDIFLHRDKRFMPQ 309 (842)
Q Consensus 286 ~~l~~~~~~~-~~v~l~~~~~~~p~ 309 (842)
+++++++|.+ .++++.++.++|+.
T Consensus 310 ~~l~~~~~~~~~kv~l~~~~~~w~~ 334 (489)
T 2jae_A 310 TALKAAKPSSSGKLGIEYSRRWWET 334 (489)
T ss_dssp HHHHTEECCCEEEEEEEESSCHHHH
T ss_pred HHHHhCCCccceEEEEEeCCCCccC
Confidence 8999999988 68889999887754
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=262.61 Aligned_cols=390 Identities=16% Similarity=0.195 Sum_probs=229.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCceeEeeCCeeeecceEeecC---CCchhHHHHHHH-cCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR---VTYPNMMEFFES-LGVDM 75 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~---~~~~~~~~l~~~-lGl~~ 75 (842)
+||+|||||++||+||+.|++.|+ +|+|+|+++++||++++....|+.+|.|+++++. .....+.+++++ +|+..
T Consensus 5 ~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~ 84 (472)
T 1b37_A 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRN 84 (472)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCce
Confidence 489999999999999999999999 8999999999999999999999999999999962 234568899999 89876
Q ss_pred ccccce---eeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHH--
Q 035870 76 EMSDMS---FSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQ-- 150 (842)
Q Consensus 76 ~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 150 (842)
...... ..+...+|+.+.. ... .........+..+.... ..... ....++.++.+
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~----------~~~-----~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~s~~~~~ 144 (472)
T 1b37_A 85 FRSDFDYLAQNVYKEDGGVYDE----------DYV-----QKRIELADSVEEMGEKL---SATLH--ASGRDDMSILAMQ 144 (472)
T ss_dssp EECCCTTGGGCEECSSSSBCCH----------HHH-----HHHHHHHHHHHHHHHHH---HHTSC--TTCTTCCBHHHHH
T ss_pred eeccCccccceeEcCCCCCCCH----------HHH-----HHHHHHHHHHHHHHHHH---HHhhc--cccchhhhHHHHH
Confidence 432211 0111112221110 000 01111111111111111 11111 11124556543
Q ss_pred HHHhcCC--CHHHHHHHHHHhhh-cccCCCchhhccCCHHHHHHHHhhccccccCCCCceE-EecCChhHHHHHHHHHhh
Q 035870 151 FVNSRGY--SELFQKAYLIPICG-SIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWL-TVRWRSHSYVNKVRKQLE 226 (842)
Q Consensus 151 ~l~~~~~--~~~~~~~~~~p~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~L~~~l~ 226 (842)
++.+... .....+.++.+++. ..++.+++.++.........+.. .....++ .++||++.++++|++.+.
T Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-------~~~~~~~~~~~gG~~~l~~~l~~~l~ 217 (472)
T 1b37_A 145 RLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSD-------FGDDVYFVADQRGYEAVVYYLAGQYL 217 (472)
T ss_dssp HHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHH-------HCSEEEEECCTTCTTHHHHHHHHTTS
T ss_pred HHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhccccccccc-------cCCceeeeecCCcHHHHHHHHHHhcc
Confidence 5544321 11112334444432 22344444432111100000100 0112222 247999999999999987
Q ss_pred hc--------CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhh---cCCCChHHHHhccccceee
Q 035870 227 SW--------GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKIL---GNQATFDETRILGAFQYVY 295 (842)
Q Consensus 227 ~~--------G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll---~~~~~~~~~~~l~~~~~~~ 295 (842)
+. |++|+++++|++|..++++|.|++.+|+++.||+||+|+|+..+.+++ .+.+++...+++.++.+..
T Consensus 218 ~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~ 297 (472)
T 1b37_A 218 KTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAV 297 (472)
T ss_dssp CBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEEC
T ss_pred ccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcc
Confidence 65 679999999999999999999999999899999999999999998754 3556777788889998888
Q ss_pred -ceEEEecCCCCcCCCC-C-----------Ccceee-eccc-CCCceEEEEEccc----ccCCCC-----CCCCeEEecC
Q 035870 296 -SDIFLHRDKRFMPQNP-A-----------AWSAWN-FLES-FDSKVCLTYWLNV----LQNLGE-----TSLPFLVTLN 351 (842)
Q Consensus 296 -~~v~l~~~~~~~p~~~-~-----------~~~~~~-~~~~-~~~~~~v~~~~~~----l~~l~~-----~~~~~~~~l~ 351 (842)
.++++.++.++|+... . ....|. +... ++....+..+... +..+.+ .+.+.+..+.
T Consensus 298 ~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~ 377 (472)
T 1b37_A 298 YTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF 377 (472)
T ss_dssp EEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHC
T ss_pred eeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 6899999998887521 1 001121 1111 2333333332211 111111 1112222333
Q ss_pred CCC---CCcc-eeEEEEc------CCCCCCHHHHHHHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcC
Q 035870 352 PDH---VPEH-TLLKWST------GHPVPSVAASKASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 352 ~~~---~~~~-~~~~w~~------~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~ 418 (842)
|.. .+.. .+.+|.. +++.+.++.... ....-.++.++|||||+++. .|.+++|+.||+++|++|+.
T Consensus 378 Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~-~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~ 456 (472)
T 1b37_A 378 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY-EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 456 (472)
T ss_dssp TTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHH-HHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceEEecccCCCCCCCcccCCCCCCCChh-HHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHH
Confidence 221 1211 3346621 222233332211 11112567789999999874 44569999999999999975
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=257.56 Aligned_cols=351 Identities=12% Similarity=0.081 Sum_probs=226.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee--CCeee-ecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DGVDL-DLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
+||+|||||++||++|+.|+++|++|+|+|+++++||+++|... .|+.+ |.|+|+++. .++++.++++++|.....
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~l~~~~~~ 82 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT-DNETVWNYVNKHAEMMPY 82 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHHTTSCEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECC-CCHHHHHHHHHHhhhccc
Confidence 48999999999999999999999999999999999999999988 78876 999999974 788999999999863211
Q ss_pred ccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCC
Q 035870 78 SDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGY 157 (842)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (842)
.. .. ....+|+.+.++. ++..+.......+.+. +. ..++....... ..++.|+++|+.+. +
T Consensus 83 ~~-~~-~~~~~g~~~~~P~--~~~~~~~l~~~~~~~~------~~-------~~~l~~~~~~~-~~~~~sl~e~~~~~-~ 143 (384)
T 2bi7_A 83 VN-RV-KATVNGQVFSLPI--NLHTINQFFSKTCSPD------EA-------RALIAEKGDST-IADPQTFEEEALRF-I 143 (384)
T ss_dssp CC-CE-EEEETTEEEEESC--CHHHHHHHTTCCCCHH------HH-------HHHHHHHSCCS-CSSCCBHHHHHHHH-H
T ss_pred cc-ce-EEEECCEEEECCC--ChhHHHHHhcccCCHH------HH-------HHHHHHhhhcc-CCCCcCHHHHHHHh-h
Confidence 11 11 1223455444432 1111110000001111 00 11111111111 23678999999988 8
Q ss_pred CHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceE-EecCChhHHHHHHHHHhhhcCceEEeCC
Q 035870 158 SELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWL-TVRWRSHSYVNKVRKQLESWGCQIRTSS 236 (842)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~L~~~l~~~G~~i~~~~ 236 (842)
++.+.+.++.|++.++|+.++++++...+. .+............+.|. +++||+++++++|++.. |++|++|+
T Consensus 144 g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~---r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~---g~~I~l~~ 217 (384)
T 2bi7_A 144 GKELYEAFFKGYTIKQWGMQPSELPASILK---RLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHE---NIKVDLQR 217 (384)
T ss_dssp CHHHHHHHTHHHHHHHHSSCGGGSBGGGCC---SCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCST---TEEEEESC
T ss_pred cHHHHHHHHHHHHHHHhCCCHHHhCHHHHh---ccccccccccccccccccEEECcCHHHHHHHHHhcC---CCEEEECC
Confidence 899999999999999999999998543321 000000000111123454 89999999999999754 88999999
Q ss_pred Cee-EEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeece-EEEecCCCCcCCCCCCc
Q 035870 237 EVC-SVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSD-IFLHRDKRFMPQNPAAW 314 (842)
Q Consensus 237 ~V~-~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~-v~l~~~~~~~p~~~~~~ 314 (842)
+|+ +|.. .||+||+|+|++.+.++ .+.+++|.+.. +.+.+|+.+ + .
T Consensus 218 ~V~~~i~~---------------~~d~VI~a~p~~~~~~~-----------~lg~l~y~s~~~v~~~~d~~~-~--~--- 265 (384)
T 2bi7_A 218 EFIVEERT---------------HYDHVFYSGPLDAFYGY-----------QYGRLGYRTLDFKKFTYQGDY-Q--G--- 265 (384)
T ss_dssp CCCGGGGG---------------GSSEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEEESCS-S--S---
T ss_pred eeehhhhc---------------cCCEEEEcCCHHHHHHh-----------hcCCCCcceEEEEEEEeCCCC-C--C---
Confidence 999 7852 29999999999987765 25678999964 445555222 1 1
Q ss_pred cee-eecccCCCceEEEEEcccccCCCCCCCCeEEecCCCCCCcceeEEEE----cCCCCCCHHHHHHHHhhhhhcCC-C
Q 035870 315 SAW-NFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTLLKWS----TGHPVPSVAASKASLELDHIQGK-R 388 (842)
Q Consensus 315 ~~~-~~~~~~~~~~~v~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~w~----~~~p~~~~~~~~~~~~~~~~~~~-~ 388 (842)
.+| +|.........++.+.+-...+.. ...+..+. ....|. ..+|.++.++...+.++.+.... +
T Consensus 266 ~~~~n~~~~~~~~~ri~~~~~~~~~~~~--~~~~v~~e-------~~~~~~~~~~p~ypv~~~~~~~~~~~~~~~~~~~~ 336 (384)
T 2bi7_A 266 CAVMNYCSVDVPYTRITEHKYFSPWEQH--DGSVCYKE-------YSRACEENDIPYYPIRQMGEMALLEKYLSLAENET 336 (384)
T ss_dssp SSEEEECSTTSSSSEEEEGGGGCTTSCC--SEEEEEEE-------EEEECCTTCCCCEECCCHHHHHHHHHHHHHHTTCS
T ss_pred CEEEEecCCCCCeeeEEEeeccCCCCCC--CCEEEEEE-------EeccccCCCccccccCChhHHHHHHHHHHHHhcCC
Confidence 234 554322111223333222222211 11111111 111343 35788888999888888875554 8
Q ss_pred CeEEeccccC--CCCCchhHhHHHHHHHHhcC
Q 035870 389 GIWFCGAYQG--YGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 389 ~l~~aG~~~g--~G~~e~A~~SG~~aA~~Il~ 418 (842)
||+|||.|.+ .+.+++|+.||..+|++|++
T Consensus 337 ~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~ 368 (384)
T 2bi7_A 337 NITFVGRLGTYRYLDMDVTIAEALKTAEVYLN 368 (384)
T ss_dssp SEEECHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEccccEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 9999998643 34459999999999999976
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-27 Score=257.44 Aligned_cols=355 Identities=13% Similarity=0.135 Sum_probs=227.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeee-cceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLD-LGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d-~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
+||+|||||++||+||++|+++|++|+|+|+++++||++++...+|+.++ .|+++++. .++.+.++++++|.......
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~l~~~~~~~~ 80 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT-NDKYIWDYVNDLVEFNRFTN 80 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE-SCHHHHHHHHTTSCBCCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecC-CCHHHHHHHHHhhhhhhccc
Confidence 48999999999999999999999999999999999999999999999995 99999964 57888899999886433222
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCH
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSE 159 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (842)
.. ....+|+.+.++. +...+.. ......+ .....++..........++.|+++|+.++ +++
T Consensus 81 ~~--~~~~~g~~~~~p~--~~~~~~~-l~~~~~~-------------~~~~~~l~~~~~~~~~~~~~s~~~~~~~~-~g~ 141 (367)
T 1i8t_A 81 SP--LAIYKDKLFNLPF--NMNTFHQ-MWGVKDP-------------QEAQNIINAQKKKYGDKVPENLEEQAISL-VGE 141 (367)
T ss_dssp CC--EEEETTEEEESSB--SHHHHHH-HHCCCCH-------------HHHHHHHHHHTTTTCCCCCCSHHHHHHHH-HHH
T ss_pred cc--eEEECCeEEEcCC--CHHHHHH-HhccCCH-------------HHHHHHHHHHhhccCCCCCccHHHHHHHH-HhH
Confidence 22 1223454444322 1111100 0000011 01111122111111123678999999988 888
Q ss_pred HHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceE-EecCChhHHHHHHHHHhhhcCceEEeCCCe
Q 035870 160 LFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWL-TVRWRSHSYVNKVRKQLESWGCQIRTSSEV 238 (842)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V 238 (842)
.+.+.++.|++.++|+.++++++..... ..............+.|. +++||+++++++|++ |++|++|++|
T Consensus 142 ~~~~~~~~p~~~~~~~~~~~~lsa~~~~---~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V 213 (367)
T 1i8t_A 142 DLYQALIKGYTEKQWGRSAKELPAFIIK---RIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDF 213 (367)
T ss_dssp HHHHHHTHHHHHHHHSSCGGGSCTTSSC---CCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHT-----TSEEECSCCG
T ss_pred HHHHHHHHHHHhhhhCCChHHcCHHHHh---hceeeeccccccccchhhcccCCCHHHHHHHHhc-----CCEEEeCCce
Confidence 9999999999999999999998654321 000000000111134454 899999999999987 5799999999
Q ss_pred eEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeeceE-EEecCCCCcCCCCCCccee
Q 035870 239 CSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDI-FLHRDKRFMPQNPAAWSAW 317 (842)
Q Consensus 239 ~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~~v-~l~~~~~~~p~~~~~~~~~ 317 (842)
++|.. +| ++.||+||+|+|+..+.++ .+.+++|.+..+ .+.++.+.+|. ..| +
T Consensus 214 ~~i~~---~v--------~~~~D~VV~a~p~~~~~~~-----------~l~~l~y~s~~~v~~~~d~~~~~~--~~~--~ 267 (367)
T 1i8t_A 214 LKDKD---SL--------ASKAHRIIYTGPIDQYFDY-----------RFGALEYRSLKFETERHEFPNFQG--NAV--I 267 (367)
T ss_dssp GGSHH---HH--------HTTEEEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEESSSCSSS--SSE--E
T ss_pred eeech---hh--------hccCCEEEEeccHHHHHHH-----------hhCCCCCceEEEEEEEeccccCCC--CeE--E
Confidence 98863 12 2469999999999876543 356889999654 46678776653 223 3
Q ss_pred eecccCCCceEEEEEcccccCCCCCCCCeEEecCCCCCCcceeEEEE----cCCCCCCHHHHHHHHhhhh-hcCCCCeEE
Q 035870 318 NFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTLLKWS----TGHPVPSVAASKASLELDH-IQGKRGIWF 392 (842)
Q Consensus 318 ~~~~~~~~~~~v~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~w~----~~~p~~~~~~~~~~~~~~~-~~~~~~l~~ 392 (842)
++.........++.+.+-... .. ...+..+.. ...|. ..+|.++........++.+ .++.+||+|
T Consensus 268 ~~~~~~~~~~ri~~~~~~~~~-~~--~~~~v~~e~-------~~~~~~~~~p~ypv~~~~~~~~~~~~~~~~~~~~~~~~ 337 (367)
T 1i8t_A 268 NFTDANVPYTRIIEHKHFDYV-ET--KHTVVTKEY-------PLEWKVGDEPYYPVNDNKNMELFKKYRELASREDKVIF 337 (367)
T ss_dssp EECCTTSSCSEEEEGGGGSCC-CC--SCEEEEEEE-------EEECCTTSCCCEECCSHHHHHHHHHHHHHHHHCTTEEE
T ss_pred EeCCCCCceeeEEeecccCCC-CC--CCEEEEEEE-------ecccCCCCeeecccCChhHHHHHHHHHHHHhcCCCEEE
Confidence 333211111222222221111 00 111111110 01232 2577888888888877776 456789999
Q ss_pred ecccc--CCCCCchhHhHHHHHHHHhcCC
Q 035870 393 CGAYQ--GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 393 aG~~~--g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
||.|. +.+.+++|+.||..+|++|+..
T Consensus 338 ~Gr~~~~~y~~~~d~i~sa~~~a~~~~~~ 366 (367)
T 1i8t_A 338 GGRLAEYKYYDMHQVISAALYQVKNIMST 366 (367)
T ss_dssp CSTTTTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred cccceeeEecCHHHHHHHHHHHHHHHhcc
Confidence 99863 3344499999999999999753
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-28 Score=265.39 Aligned_cols=360 Identities=11% Similarity=0.087 Sum_probs=221.8
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCCceeEee--CCeee-ecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGHAKTVTF--DGVDL-DLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
+||+|||||++||+||++|+++ |++|+|||+++++||+++|... +|+.+ +.|+++++. .++.+.++++++|+...
T Consensus 8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~~g~~~~ 86 (399)
T 1v0j_A 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT-SNKRVWDYVRQFTDFTD 86 (399)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHTTTCCBCC
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC-CcHHHHHHHHHhhhhhc
Confidence 4899999999999999999999 9999999999999999999988 78888 499999964 68899999999997322
Q ss_pred cccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 77 MSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
... ....+.+|+.+.++. +...+.......+.+.. +... ..+..... ...++.|+++|+.+.
T Consensus 87 ~~~--~~~~~~~G~~~~~p~--~~~~~~~l~~~~~~~~~---~~~~------l~~~~~~~----~~~~~~s~~e~l~~~- 148 (399)
T 1v0j_A 87 YRH--RVFAMHNGQAYQFPM--GLGLVSQFFGKYFTPEQ---ARQL------IAEQAAEI----DTADAQNLEEKAISL- 148 (399)
T ss_dssp CCC--CEEEEETTEEEEESS--SHHHHHHHHTSCCCHHH---HHHH------HHHHGGGS----CTTC----CCHHHHH-
T ss_pred ccc--ceEEEECCEEEeCCC--CHHHHHHHhcccCCHHH---HHHH------HHHHhhcc----CCCCcccHHHHHHHH-
Confidence 111 112233455444432 11001000000001111 1100 00111111 122578999999985
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceE-EecCChhHHHHHHHHHhhhcCceEEeC
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWL-TVRWRSHSYVNKVRKQLESWGCQIRTS 235 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~l~~~L~~~l~~~G~~i~~~ 235 (842)
+++.+.+.++.|++.++|+.++++++...+. .+..............+. +++||+++++++|++.+ |++|++|
T Consensus 149 ~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~---~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~---g~~I~l~ 222 (399)
T 1v0j_A 149 IGRPLYEAFVKGYTAKQWQTDPKELPAANIT---RLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADH---RIEVRLN 222 (399)
T ss_dssp HCHHHHHHHTHHHHHHHHTSCGGGSCGGGCS---CCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCST---TEEEECS
T ss_pred HhHHHHHHHHHHHHHhhcCCChhhcChHhhh---cceeEeccccchhhhhhcccccccHHHHHHHHHhcC---CeEEEEC
Confidence 7888899999999999999999988543221 000000000011122453 88999999999999855 8899999
Q ss_pred CCeeEEEeCCCcEEEEeCCCcEE-eCCEEEEccChHHHHHhhcCCCChHHHHhccccceee-ceEEEecCCCCcCCCCCC
Q 035870 236 SEVCSVLPADKGCTIVCGDGSRE-FYNSCVMALHAPDALKILGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNPAA 313 (842)
Q Consensus 236 ~~V~~I~~~~~~v~V~~~~G~~~-~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~~ 313 (842)
++|++|... | + ++ .||+||+|+|+..+.++ .+.+++|.+ ..+.+.++.+..+ ..
T Consensus 223 ~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~-----------~l~~l~y~s~~~~~~~~~~~~~~---~~ 278 (399)
T 1v0j_A 223 TDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY-----------AEGRLGWRTLDFEVEVLPIGDFQ---GT 278 (399)
T ss_dssp CCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEESSSCSS---SS
T ss_pred Cchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh-----------hhCCCCcceEEEEEEEEccccCC---CC
Confidence 999999643 2 1 35 79999999999987654 356789988 3455555654222 22
Q ss_pred cceeeecccCCCceEEEEEcccccCCC-CCCCCeEEecCCCCCCcceeEEEE----cCCCCCCHHHHHHHHhhhhhc-CC
Q 035870 314 WSAWNFLESFDSKVCLTYWLNVLQNLG-ETSLPFLVTLNPDHVPEHTLLKWS----TGHPVPSVAASKASLELDHIQ-GK 387 (842)
Q Consensus 314 ~~~~~~~~~~~~~~~v~~~~~~l~~l~-~~~~~~~~~l~~~~~~~~~~~~w~----~~~p~~~~~~~~~~~~~~~~~-~~ 387 (842)
| .+++.........++.+.+-.+... .. ...+..+.. ...|. ..+|.++..+...+.++.+.. +.
T Consensus 279 ~-~~~~~~~~~~~~ri~~~~~~~~~~~~~~-~~~~v~~e~-------~~~~~~~~~~~ypv~~~~~~~~~~~~~~~~~~~ 349 (399)
T 1v0j_A 279 A-VMNYNDLDVPYTRIHEFRHFHPERDYPT-DKTVIMREY-------SRFAEDDDEPYYPINTEADRALLATYRARAKSE 349 (399)
T ss_dssp S-EEEECCTTSSCSEEEEGGGGCTTSCCCS-SCEEEEEEE-------EEECCTTSCCCEECCCHHHHHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCCCcceeEeecCCCCCCcCCC-CCeEEEEee-------cccccCCCccccccCcHHHHHHHHHHHHHHHhc
Confidence 2 2444432111223344433222221 11 111111111 01232 247788888887777766633 34
Q ss_pred ---CCeEEecccc--CCCCCchhHhHHHHHHHHhcC
Q 035870 388 ---RGIWFCGAYQ--GYGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 388 ---~~l~~aG~~~--g~G~~e~A~~SG~~aA~~Il~ 418 (842)
+||||||+|+ +.+.+|+|+.||.++|++|+.
T Consensus 350 ~~~~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~ 385 (399)
T 1v0j_A 350 TASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLA 385 (399)
T ss_dssp HHHHCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHH
T ss_pred cccCCEEEccceEEEEecCHHHHHHHHHHHHHHHhh
Confidence 7999999863 334459999999999999974
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=260.48 Aligned_cols=395 Identities=16% Similarity=0.147 Sum_probs=228.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe--eCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT--FDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||++||+||+.|++.|++|+|||+++++||++.|.. ..|+.+|.|++++. ...+.+.++++++|+.....
T Consensus 34 ~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~g~~~~~~ 112 (498)
T 2iid_A 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLP-EKHRIVREYIRKFDLRLNEF 112 (498)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEE-TTCHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCccccc-chHHHHHHHHHHhCCCceee
Confidence 4899999999999999999999999999999999999999988 46899999999995 45677889999999875432
Q ss_pred cc--eeeEeccCCCceeeC----CCCCCcc-hhhhhhccCChH-HHHHHHHHHhhhHH--HHHHHHhhcCCCCCCccccH
Q 035870 79 DM--SFSVSLEKGHGCEWG----SRNGLSS-LFAQKKNVLNPY-FWQMLREIIKFKDD--VLGYLEELESNPDIDRSETL 148 (842)
Q Consensus 79 ~~--~~~~~~~~g~~~~~~----~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~ 148 (842)
.. ...+...+|...... .+..+.. +........... +............. ....... .+..++
T Consensus 113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~ 185 (498)
T 2iid_A 113 SQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNK-------YDTYST 185 (498)
T ss_dssp CSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHH-------HTTSBH
T ss_pred cccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHH-------hhhhhH
Confidence 11 000111122111000 0000000 000000000000 00011110000000 0000000 146789
Q ss_pred HHHHHhcC-CCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhh
Q 035870 149 GQFVNSRG-YSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLES 227 (842)
Q Consensus 149 ~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~ 227 (842)
.+|+...+ ++...... +..++.... ....+....+..... ......++.++||++.++++|++.+.+
T Consensus 186 ~~~l~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~gG~~~l~~~l~~~l~~ 253 (498)
T 2iid_A 186 KEYLIKEGDLSPGAVDM-IGDLLNEDS------GYYVSFIESLKHDDI-----FAYEKRFDEIVDGMDKLPTAMYRDIQD 253 (498)
T ss_dssp HHHHHHTSCCCHHHHHH-HHHHTTCGG------GTTSBHHHHHHHHHH-----HTTCCCEEEETTCTTHHHHHHHHHTGG
T ss_pred HHHHHHccCCCHHHHHH-HHHhcCccc------chhHHHHHHHHHHhc-----cccCcceEEeCCcHHHHHHHHHHhccc
Confidence 99998865 44443322 222211100 000011111110000 012356789999999999999999953
Q ss_pred cCceEEeCCCeeEEEeCCCcEEEEeCCCc----EEeCCEEEEccChHHHHHhh-cCCCChHHHHhccccceee-ceEEEe
Q 035870 228 WGCQIRTSSEVCSVLPADKGCTIVCGDGS----REFYNSCVMALHAPDALKIL-GNQATFDETRILGAFQYVY-SDIFLH 301 (842)
Q Consensus 228 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~----~~~ad~VV~A~p~~~~~~ll-~~~~~~~~~~~l~~~~~~~-~~v~l~ 301 (842)
+|++|++|++|..++++|.|++.+|+ ++.||+||+|+|+..+.++. .+++++...+++++++|.+ .++++.
T Consensus 254 ---~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~ 330 (498)
T 2iid_A 254 ---KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLT 330 (498)
T ss_dssp ---GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEE
T ss_pred ---ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCHHHHHHHHhCCCcceeEEEEE
Confidence 89999999999999999999887775 48999999999999888763 4557778888999999998 689999
Q ss_pred cCCCCcCCCCC--C--c----ceeeecc---cCCCceEEEEEcc-c----ccCCCCC-----CCCeEEecCCCCCC----
Q 035870 302 RDKRFMPQNPA--A--W----SAWNFLE---SFDSKVCLTYWLN-V----LQNLGET-----SLPFLVTLNPDHVP---- 356 (842)
Q Consensus 302 ~~~~~~p~~~~--~--~----~~~~~~~---~~~~~~~v~~~~~-~----l~~l~~~-----~~~~~~~l~~~~~~---- 356 (842)
|+.++|+.... . + ..+.+.. .|++..++..+.. . +..+.+. +.+.+..+.+...+
T Consensus 331 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~ 410 (498)
T 2iid_A 331 CTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQS 410 (498)
T ss_dssp ESSCGGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred eCCCCccCCCccCCcccCCCCcceEEECCCCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCCChhhhhh
Confidence 99998865321 0 0 0111111 2344444444432 1 1111111 11112222221111
Q ss_pred ---cceeEEEEc------CCCCCCHHHHHHHHhhhhhcCCCCeEEecccc--CCCCCchhHhHHHHHHHHhcCC
Q 035870 357 ---EHTLLKWST------GHPVPSVAASKASLELDHIQGKRGIWFCGAYQ--GYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 357 ---~~~~~~w~~------~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~--g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
..++.+|.. ++..+.++..... ...-.++.++|||||+++ ..|++++|+.||+++|++|++.
T Consensus 411 ~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~-~~~l~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~ 483 (498)
T 2iid_A 411 FCYPSVIQKWSLDKYAMGGITTFTPYQFQHF-SDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA 483 (498)
T ss_dssp HEEEEEEEEGGGCTTTCSSEECCCTTHHHHH-HHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCccEEEecCCCCCCCceeeecCCcchHHH-HHHHhCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 124456753 1111222222211 111144678999999976 3466699999999999999763
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=264.79 Aligned_cols=382 Identities=16% Similarity=0.153 Sum_probs=220.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
+||+|||||++||+||+.|++.|++|+|+|+++++||+++|... +|+.+|.|++++++.....+..+++++|+......
T Consensus 337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~ 416 (776)
T 4gut_A 337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFG 416 (776)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcccccc
Confidence 48999999999999999999999999999999999999999876 68999999999976555667789999999865543
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHH--------
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQF-------- 151 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-------- 151 (842)
....+...+|.. ..+........... ...+.............+.++.++
T Consensus 417 ~~~~l~~~~g~~-------------------~~~~~~~~~~~~~~---~ll~~~~~~~~~~~~~~d~sl~~~~~~~~~~~ 474 (776)
T 4gut_A 417 ERCDLIQEGGRI-------------------TDPTIDKRMDFHFN---ALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAF 474 (776)
T ss_dssp SCCCEECTTSCB-------------------CCHHHHHHHHHHHH---HHHHHHHHHGGGCCGGGCCBHHHHHHHHHHHH
T ss_pred cccceEccCCcc-------------------cchhHHHHHHHHHH---HHHHHHHHHhhcccccccccHHHHHHHHHHHH
Confidence 322222222211 01111111111000 001111110000011123444443
Q ss_pred HHhcCCCHHHH-H---HHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhh
Q 035870 152 VNSRGYSELFQ-K---AYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLES 227 (842)
Q Consensus 152 l~~~~~~~~~~-~---~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~ 227 (842)
+...+..-... . .+..+.+....+.....++. .. +....... ...+....+++|++.++++|++
T Consensus 475 l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~---~~----~~~~~~~~-~~~G~~~~~~~G~~~l~~aLa~---- 542 (776)
T 4gut_A 475 IKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSA---RS----WDHNEFFA-QFAGDHTLLTPGYSVIIEKLAE---- 542 (776)
T ss_dssp HHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBT---TT----TTGGGGSC-CCCSCEEECTTCTHHHHHHHHT----
T ss_pred HHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcCh---hh----hhhhhhHH-hcCCCeEEECChHHHHHHHHHh----
Confidence 33332210000 0 01111111112222222210 00 00000000 1234567788999999999886
Q ss_pred cCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh---hcCCCChHHHHhccccceee-ceEEEecC
Q 035870 228 WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI---LGNQATFDETRILGAFQYVY-SDIFLHRD 303 (842)
Q Consensus 228 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l---l~~~~~~~~~~~l~~~~~~~-~~v~l~~~ 303 (842)
|++|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+. +.+++++...+++..+++.+ .++++.|+
T Consensus 543 -gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~ 621 (776)
T 4gut_A 543 -GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFP 621 (776)
T ss_dssp -TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECS
T ss_pred -CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecC
Confidence 66899999999999999999999999989999999999999998752 44557788889999999998 69999999
Q ss_pred CCCcCCC---CCC------------cceeeecccCCC-ceEEEEEccc-----ccCCCCC-----CCCeEEecCCC-CC-
Q 035870 304 KRFMPQN---PAA------------WSAWNFLESFDS-KVCLTYWLNV-----LQNLGET-----SLPFLVTLNPD-HV- 355 (842)
Q Consensus 304 ~~~~p~~---~~~------------~~~~~~~~~~~~-~~~v~~~~~~-----l~~l~~~-----~~~~~~~l~~~-~~- 355 (842)
.++|+.. ... +....+...+.+ ..++..++.. +..+.+. +.+.+..+.+. ..
T Consensus 622 ~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~ 701 (776)
T 4gut_A 622 YRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 701 (776)
T ss_dssp SCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cccccccCCCCceEEeecCCcCCCceEEEEecCCCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCccccc
Confidence 9988642 010 101112222332 2344434331 1122111 11223333322 22
Q ss_pred -Ccc-eeEEEEc---CCCCCC---HHHH-HHHHhhhhhcCCCCeEEeccccC---CCCCchhHhHHHHHHHHhcC
Q 035870 356 -PEH-TLLKWST---GHPVPS---VAAS-KASLELDHIQGKRGIWFCGAYQG---YGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 356 -~~~-~~~~w~~---~~p~~~---~~~~-~~~~~~~~~~~~~~l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~ 418 (842)
|.. .+.+|.. ....|. ++.. .....+. .+..++|||||+++. .|+++||+.||.++|++|++
T Consensus 702 ~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~-~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 702 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIA-EDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp CCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHH-CCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred CcceEEEecCCCCCccCCCCCccCCCCchhHHHHHh-CcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 222 4457743 111111 1110 1111111 122479999999874 56679999999999999975
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=239.14 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=195.3
Q ss_pred CchHHhhhhh-hhhhcCChHHHHhccCCC-CcccccccCCCcccHHHHHHHHHHHHHHHcC-CCCCCeEEEeccCchHHH
Q 035870 568 NTLTQARRNI-SRHYDLSNELFSLFLDES-MTYSCAVFKSEDEDLKAAQMRKVSLLIEKAR-VSKGQEVLEIGCGWGTLA 644 (842)
Q Consensus 568 ~~~~~~~~~i-~~~Yd~~~~~~~~~l~~~-~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~ 644 (842)
|...++++++ ..|||.+++++..+.++. +.|+.++|.. ...+.+++. +.+++.+. ++++.+|||||||+|.++
T Consensus 57 ~~~~g~~~~i~~~~y~~~~~~~~~~~~~~~~~y~~~~f~~-~~~~~~~~~---~~l~~~l~~~~~~~~vLDiGcG~G~~~ 132 (312)
T 3vc1_A 57 NLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAE-LHRLESAQA---EFLMDHLGQAGPDDTLVDAGCGRGGSM 132 (312)
T ss_dssp HHHHHTTTTCCCCSCCCSCCCHHHHCCTTSTTHHHHHHHH-HHHHHHHHH---HHHHTTSCCCCTTCEEEEESCTTSHHH
T ss_pred hhhcccccchhhhhcCCchhHHHhhcCCCccccchHHHhh-hhhHHHHHH---HHHHHHhccCCCCCEEEEecCCCCHHH
Confidence 4556777788 899999999999999988 9999999875 234444444 57788887 889999999999999999
Q ss_pred HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHh
Q 035870 645 IEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCES 723 (842)
Q Consensus 645 ~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~ 723 (842)
..+++..+++|+|+|+|+++++.|+++++..++.++++++++|+.+++ ++++||+|+++.+++|++ +..+++++.+
T Consensus 133 ~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~ 209 (312)
T 3vc1_A 133 VMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSR 209 (312)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHH
Confidence 999998788999999999999999999999999889999999999987 668999999999999994 7999999999
Q ss_pred ccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHHH
Q 035870 724 LLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFM 803 (842)
Q Consensus 724 ~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~ 803 (842)
+|||||++++.+....... ........++..+.++ .+++..++.+.+++ +||+++.+++++ ..++..|..+|.
T Consensus 210 ~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~s~~~~~~~l~~-aGf~~~~~~~~~---~~~~~~w~~~~~ 282 (312)
T 3vc1_A 210 FLKVGGRYVTITGCWNPRY-GQPSKWVSQINAHFEC--NIHSRREYLRAMAD-NRLVPHTIVDLT---PDTLPYWELRAT 282 (312)
T ss_dssp HEEEEEEEEEEEEEECTTT-CSCCHHHHHHHHHHTC--CCCBHHHHHHHHHT-TTEEEEEEEECH---HHHHHHHHHHTT
T ss_pred HcCCCcEEEEEEccccccc-cchhHHHHHHHhhhcC--CCCCHHHHHHHHHH-CCCEEEEEEeCC---HHHHHHHHHHHH
Confidence 9999999999876654422 1111223344444444 37889999988887 899999999987 478899999988
Q ss_pred HhHHHHHhccCCHHHHHHHH
Q 035870 804 EKQSKILALGFNDKFIRTWE 823 (842)
Q Consensus 804 ~~~~~~~~~g~~~~~~r~w~ 823 (842)
+. ...|+++.|.+.++
T Consensus 283 ~~----~~~g~~~~~~~~~~ 298 (312)
T 3vc1_A 283 SS----LVTGIEKAFIESYR 298 (312)
T ss_dssp ST----TCCSCHHHHHHHHH
T ss_pred Hh----hhhcChHHHHHHHH
Confidence 55 35578888877544
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=250.74 Aligned_cols=209 Identities=13% Similarity=0.147 Sum_probs=134.7
Q ss_pred CceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC------CcEEeCCEEEEccChHHHHHh---
Q 035870 205 PQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD------GSREFYNSCVMALHAPDALKI--- 275 (842)
Q Consensus 205 ~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~------G~~~~ad~VV~A~p~~~~~~l--- 275 (842)
+.++.++||+++|+++|++. .+|++|++|++|.+++++|.|++.+ |+++.||+||+|+|+.+++++
T Consensus 391 g~~~~~~gG~~~l~~~La~~-----l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~ 465 (662)
T 2z3y_A 391 GSHLTVRNGYSCVPVALAEG-----LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 465 (662)
T ss_dssp SCCEEETTCTTHHHHHHTTT-----CEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred CceeeecCcHHHHHHHHHhc-----CceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCc
Confidence 45789999999999999874 4899999999999999999998866 568999999999999999873
Q ss_pred --hcCCCChHHHHhccccceee-ceEEEecCCCCcCCCCCCcce-----------eeecccCCCceEEEEEccc----cc
Q 035870 276 --LGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNPAAWSA-----------WNFLESFDSKVCLTYWLNV----LQ 337 (842)
Q Consensus 276 --l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~----l~ 337 (842)
+.|++++...+++++++|.+ .++++.|+.++|+.....+.. +.+.......+++.+..+. +.
T Consensus 466 i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~ 545 (662)
T 2z3y_A 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIME 545 (662)
T ss_dssp SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCSSSSEEEEEECTHHHHHHT
T ss_pred eEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCCCCCEEEEEeccHhHHHHH
Confidence 45557777888999999999 699999999999764211100 1111111223333333221 11
Q ss_pred CCCCC-----CCCeEEec-CCCC--CCcc-eeEEEEc------CCCCCCHHH----HHHHHhhh--------hhcCCCCe
Q 035870 338 NLGET-----SLPFLVTL-NPDH--VPEH-TLLKWST------GHPVPSVAA----SKASLELD--------HIQGKRGI 390 (842)
Q Consensus 338 ~l~~~-----~~~~~~~l-~~~~--~~~~-~~~~w~~------~~p~~~~~~----~~~~~~~~--------~~~~~~~l 390 (842)
.+.+. ..+.+..+ +... .|.. .+.+|.. +++.+.++. ......+. ..++.++|
T Consensus 546 ~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl 625 (662)
T 2z3y_A 546 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625 (662)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCE
T ss_pred hCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcE
Confidence 11111 11122222 2222 2333 4557754 222222222 11111111 02345799
Q ss_pred EEeccccC---CCCCchhHhHHHHHHHHhcC
Q 035870 391 WFCGAYQG---YGFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 391 ~~aG~~~g---~G~~e~A~~SG~~aA~~Il~ 418 (842)
||||+++. .|+++||+.||.++|++|+.
T Consensus 626 ~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~ 656 (662)
T 2z3y_A 626 FFAGEHTIRNYPATVHGALLSGLREAGRIAD 656 (662)
T ss_dssp EECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999774 56779999999999999975
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=256.76 Aligned_cols=209 Identities=13% Similarity=0.160 Sum_probs=135.1
Q ss_pred CceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC------CcEEeCCEEEEccChHHHHHh---
Q 035870 205 PQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD------GSREFYNSCVMALHAPDALKI--- 275 (842)
Q Consensus 205 ~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~------G~~~~ad~VV~A~p~~~~~~l--- 275 (842)
+.++.++||++.|+++|++.+ +|++|++|++|.+++++|.|++.+ |+++.||+||+|+|+.++.++
T Consensus 562 g~~~~~~gG~~~L~~aLa~~l-----~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~ 636 (852)
T 2xag_A 562 GSHLTVRNGYSCVPVALAEGL-----DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 636 (852)
T ss_dssp SCCEEETTCTTHHHHHHTTTC-----CEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred CceEEecCcHHHHHHHHHhCC-----CEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcc
Confidence 457899999999999998754 799999999999999999998765 568999999999999999874
Q ss_pred --hcCCCChHHHHhccccceee-ceEEEecCCCCcCCCCCCcce-----------eeecccCCCceEEEEEcc-c----c
Q 035870 276 --LGNQATFDETRILGAFQYVY-SDIFLHRDKRFMPQNPAAWSA-----------WNFLESFDSKVCLTYWLN-V----L 336 (842)
Q Consensus 276 --l~~~~~~~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~~~~~~-----------~~~~~~~~~~~~v~~~~~-~----l 336 (842)
+.+.++....+++.+++|.+ .+|++.|+.++|+.....+.. +.+.......+++ .++. . +
T Consensus 637 I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~~~pvLl-~~v~G~~a~~l 715 (852)
T 2xag_A 637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILL-ALVAGEAAGIM 715 (852)
T ss_dssp SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECSSSSEEE-EEECHHHHHHG
T ss_pred cccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCceEEEecCCCCCEEE-EEecCcCHHHH
Confidence 44557777788899999988 699999999999753211100 0111111223333 3433 1 1
Q ss_pred cCCCCC-----CCCeEEec-CCCC--CCcc-eeEEEEc------CCCCCCHHH----HHHHHhhh--------hhcCCCC
Q 035870 337 QNLGET-----SLPFLVTL-NPDH--VPEH-TLLKWST------GHPVPSVAA----SKASLELD--------HIQGKRG 389 (842)
Q Consensus 337 ~~l~~~-----~~~~~~~l-~~~~--~~~~-~~~~w~~------~~p~~~~~~----~~~~~~~~--------~~~~~~~ 389 (842)
..+.+. +.+.+..+ +... .|.. .+.+|.. +++.+.++. ......+. ..++.++
T Consensus 716 ~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~gr 795 (852)
T 2xag_A 716 ENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPR 795 (852)
T ss_dssp GGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCC
T ss_pred hcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCc
Confidence 111111 11122222 2222 2333 4557754 222222222 11111110 0234579
Q ss_pred eEEeccccC---CCCCchhHhHHHHHHHHhcCC
Q 035870 390 IWFCGAYQG---YGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 390 l~~aG~~~g---~G~~e~A~~SG~~aA~~Il~~ 419 (842)
|||||+++. .|+++||+.||.++|++|+..
T Consensus 796 L~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~ 828 (852)
T 2xag_A 796 LFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 828 (852)
T ss_dssp EEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999874 567799999999999999863
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=235.68 Aligned_cols=204 Identities=13% Similarity=0.107 Sum_probs=138.5
Q ss_pred ceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcC---CCCh
Q 035870 206 QWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGN---QATF 282 (842)
Q Consensus 206 ~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~---~~~~ 282 (842)
..+...+|+..+++.|++.+ |++|+++++|++|+.++++|.|++.+|+++.||.||+|+|++.+.+++.+ .+++
T Consensus 103 ~~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~ 179 (342)
T 3qj4_A 103 CNFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISE 179 (342)
T ss_dssp EEEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCH
T ss_pred cceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCH
Confidence 46778899999999999988 89999999999999999999999999987899999999999999999864 2345
Q ss_pred HHHHhccccceee-ceEEEecCCCCcCCCC--------CCcceeeecc-c-C-----CCceEEEEEccc-----ccCCCC
Q 035870 283 DETRILGAFQYVY-SDIFLHRDKRFMPQNP--------AAWSAWNFLE-S-F-----DSKVCLTYWLNV-----LQNLGE 341 (842)
Q Consensus 283 ~~~~~l~~~~~~~-~~v~l~~~~~~~p~~~--------~~~~~~~~~~-~-~-----~~~~~v~~~~~~-----l~~l~~ 341 (842)
...+.+.+++|.+ .+++++|+.+++.... .....|.+.. . + ++..++...... ..++.+
T Consensus 180 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (342)
T 3qj4_A 180 CQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSI 259 (342)
T ss_dssp HHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCH
T ss_pred HHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcCCH
Confidence 6688999999999 5788999875332110 0001222211 0 1 112233333321 111111
Q ss_pred -----CCCCeEEec-CCCCCCcc-eeEEEEcCCCCCCHHHHHHHHhhhhh--cCCCCeEEecccc-CCCCCchhHhHHHH
Q 035870 342 -----TSLPFLVTL-NPDHVPEH-TLLKWSTGHPVPSVAASKASLELDHI--QGKRGIWFCGAYQ-GYGFHEDGLKAGMT 411 (842)
Q Consensus 342 -----~~~~~~~~l-~~~~~~~~-~~~~w~~~~p~~~~~~~~~~~~~~~~--~~~~~l~~aG~~~-g~G~~e~A~~SG~~ 411 (842)
.+.+.+..+ +....|.. .+++|.++.|.+... .++... ...++|++||||+ |.|+ |+|+.||.+
T Consensus 260 ~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~-----~~~~~~~~~~~~~l~laGd~~~g~~v-~~ai~sg~~ 333 (342)
T 3qj4_A 260 EDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAA-----NCPGQMTLHHKPFLACGGDGFTQSNF-DGCITSALC 333 (342)
T ss_dssp HHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCS-----SSCSCEEEETTTEEEECSGGGSCSSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCceeeeccccccccccccC-----CCcceeEecCCccEEEEccccCCCCc-cHHHHHHHH
Confidence 011122222 22223443 677999999988651 122222 4668999999977 5666 999999999
Q ss_pred HHHHhcC
Q 035870 412 AAHGVLG 418 (842)
Q Consensus 412 aA~~Il~ 418 (842)
+|++|+.
T Consensus 334 aa~~i~~ 340 (342)
T 3qj4_A 334 VLEALKN 340 (342)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999975
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=218.91 Aligned_cols=210 Identities=19% Similarity=0.269 Sum_probs=176.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
...+.+++.+.++++.+|||||||+|.++..+++..+++|+|+|+|+.+++.|+++.... ++++++++|+.+++ ++
T Consensus 42 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~ 118 (266)
T 3ujc_A 42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPE 118 (266)
T ss_dssp HHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCT
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCC
Confidence 445678888888999999999999999999999977889999999999999999887554 48999999999987 67
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccC-CCCCCCHHHHHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-GGCLPSLSRITSAM 773 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~~ 773 (842)
++||+|+++.+++|++.+++..++++++++|||||++++.++..+... .....+..++.+ +..+++..++.+.+
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-----NWDDEFKEYVKQRKYTLITVEEYADIL 193 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-----GCCHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-----cchHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 899999999999999877799999999999999999999987655411 011222333333 23567899998888
Q ss_pred hhcCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHHH----HHHHHHHHHHhccc
Q 035870 774 SVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRT----WEYYFDYCAAGFKS 835 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~----w~~y~~~~~~~f~~ 835 (842)
.+ +||++++.+.++.+|..++..|.+++.++++++.+. +++...+. |+.|+..|+.++..
T Consensus 194 ~~-~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (266)
T 3ujc_A 194 TA-CNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKL-FSEKKFISLDDGWSRKIKDSKRKMQR 257 (266)
T ss_dssp HH-TTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HH-cCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHHHHHHHHHHHcCccc
Confidence 87 899999999999999999999999999999998877 66655444 99999999988754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=224.34 Aligned_cols=225 Identities=15% Similarity=0.173 Sum_probs=174.7
Q ss_pred cccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHH------HHHHHHHHHHHcCCC
Q 035870 607 DEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEE------QLKYAEMKVKEAGLQ 678 (842)
Q Consensus 607 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~------~~~~a~~~~~~~~l~ 678 (842)
..++..+|.++...+++.+.++++.+|||||||+|.++..+++..+ ++|+|+|+|+. +++.|++++...++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~ 100 (275)
T 3bkx_A 21 ARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG
T ss_pred chHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999999999998843 89999999997 999999999988887
Q ss_pred CCeEEEEcc-cc--CCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCc-cchh
Q 035870 679 DLIRLYLCD-YR--QLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLS-SDFI 753 (842)
Q Consensus 679 ~~v~~~~~d-~~--~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~-~~~~ 753 (842)
++++++++| +. .++ ++++||+|+++.+++|+++ ...+++.++++++|||++++.++..+.......... ..+.
T Consensus 101 ~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 178 (275)
T 3bkx_A 101 DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS--ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMI 178 (275)
T ss_dssp GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC--HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHH
T ss_pred CceEEEECChhhhccCCCCCCCEEEEEEccchhhCCC--HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHH
Confidence 789999998 43 334 5689999999999999987 566788888888889999999887765422211110 0011
Q ss_pred hhcc---c---CC--CCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHH--HHHHHHHHhHHHHH-h-ccCCHHHHHH
Q 035870 754 KEYI---F---PG--GCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLR--CWRKNFMEKQSKIL-A-LGFNDKFIRT 821 (842)
Q Consensus 754 ~~~i---~---p~--~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~--~w~~~~~~~~~~~~-~-~g~~~~~~r~ 821 (842)
+... . +. ..+++..++.+.+++ +||+++..+.+ |.+|+. .|...+..++.+.. . .||++.|+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~-aGf~~~~~~~~---~~~~~~~~~W~~~~~~~~~~~~~~~~g~~~~~~~~ 254 (275)
T 3bkx_A 179 QGLLYAIAPSDVANIRTLITPDTLAQIAHD-NTWTYTAGTIV---EDPTLDDAHWEIATTNALLTELKLSTDLRDRVKPL 254 (275)
T ss_dssp HHHHHHHSCCTTCSCCCCCCHHHHHHHHHH-HTCEEEECCCB---CCTTCTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhhccccccccccccCCHHHHHHHHHH-CCCeeEEEEEe---cCCCCCCchhhHHHHHHHHHHHHhhccccHHHHHH
Confidence 1111 0 11 247899999988887 89999988876 667777 89986665554433 3 5799999999
Q ss_pred HHHHHHHHHHhcccCcccccC
Q 035870 822 WEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 822 w~~y~~~~~~~f~~~~~~~~q 842 (842)
|.. +|+.| .+.++++|
T Consensus 255 ~~~---~~~~g--~~~~~~~~ 270 (275)
T 3bkx_A 255 LEA---MSHNG--TASLATFT 270 (275)
T ss_dssp HHH---HTTSC--CCCCCEEE
T ss_pred HHH---HHhcc--ccccceee
Confidence 997 56666 45666654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-24 Score=220.48 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=168.3
Q ss_pred HHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 618 VSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 618 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
...+++.+. ++++.+|||||||+|.++..+++.++++|+|+|+|+.+++.|+++++..+++++++++++|+.+++ +++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE 113 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence 345566665 678999999999999999999998667999999999999999999999999888999999999988 678
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchh-hhcccCCCCCCCHHHHHHHHh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFI-KEYIFPGGCLPSLSRITSAMS 774 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~p~~~~~~~~~~~~~~~ 774 (842)
+||+|+++.+++|+ + +..+++++.++|||||++++.++......... ....++ .. +| .+++..++.+.+.
T Consensus 114 ~fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~--~~--~~~~~~~~~~~l~ 184 (267)
T 3kkz_A 114 ELDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPA--EINDFWMDA--YP--EIDTIPNQVAKIH 184 (267)
T ss_dssp CEEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH--HHHHHHHHH--CT--TCEEHHHHHHHHH
T ss_pred CEEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH--HHHHHHHHh--CC--CCCCHHHHHHHHH
Confidence 99999999999999 3 68999999999999999999987643221110 111222 22 22 5678999998888
Q ss_pred hcCCcEEEEEEecC-----ccHHHHHHHHHHHHHHh---HHHHHhc-cCCHHHHHHHHHHHHHHHHhcccC
Q 035870 775 VASRLCVEQVENIG-----IHYYQTLRCWRKNFMEK---QSKILAL-GFNDKFIRTWEYYFDYCAAGFKSY 836 (842)
Q Consensus 775 ~~~gf~v~~~~~~~-----~~y~~tl~~w~~~~~~~---~~~~~~~-g~~~~~~r~w~~y~~~~~~~f~~~ 836 (842)
+ +||++++.+.++ .+|..++..|.+++.+. .+++.++ .....+.|+|+.|+.+|+.+|..+
T Consensus 185 ~-aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~f~~~ 254 (267)
T 3kkz_A 185 K-AGYLPVATFILPENCWTDHYFTPKVAAQKIFLTKYAGNKIAEEFSMLQSIEEELYHKYKEYYGYTFFIA 254 (267)
T ss_dssp H-TTEEEEEEEECCGGGTTTTTHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred H-CCCEEEEEEECCHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccccCeEeehh
Confidence 7 899999999887 68999999999999653 2333332 222445899999999999999764
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=233.88 Aligned_cols=291 Identities=13% Similarity=0.160 Sum_probs=173.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--------CeEEEEecCC-CC----------------CCCceeEee-------CCee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--------VEVVLYEKDD-YL----------------GGHAKTVTF-------DGVD 48 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--------~~V~VlEa~~-~~----------------GG~~~s~~~-------~g~~ 48 (842)
++|+|||||++||+||++|++.| ++|+|||+++ ++ ||++.+... ++..
T Consensus 57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~ 136 (721)
T 3ayj_A 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTI 136 (721)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEE
T ss_pred CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcE
Confidence 47999999999999999999998 9999999999 99 999999987 4589
Q ss_pred eecceEeecCCCchhHHHHHHHc-CCCcc--c--cc--ceeeEe------ccCCCc-eeeCCCCC-Ccchhhhhhc----
Q 035870 49 LDLGFMVFNRVTYPNMMEFFESL-GVDME--M--SD--MSFSVS------LEKGHG-CEWGSRNG-LSSLFAQKKN---- 109 (842)
Q Consensus 49 ~d~G~~~~~~~~~~~~~~l~~~l-Gl~~~--~--~~--~~~~~~------~~~g~~-~~~~~~~~-~~~~~~~~~~---- 109 (842)
+|.|++++. ..++.+.++++++ |++.. . .. ....+. +.+|.. ..+..... ....+.....
T Consensus 137 ~e~G~~~~~-~~~~~~~~~~~~l~gl~~~~~~~~~~~~~~~~i~~~~~i~~~~g~~~~~~~~~~~p~p~~~~~v~~~~~~ 215 (721)
T 3ayj_A 137 YEVGAMRFP-EIAGLTWHYASAAFGDAAPIKVFPNPGKVPTEFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVG 215 (721)
T ss_dssp EECSCCCEE-TTCHHHHHHHHHHHCTTCBCCBCCCBTTBCEEEEETTEEEEESSSCGGGBSSTTCHHHHHHHHHHHHHTC
T ss_pred EecCCEEec-CccHHHHHHHHHhcCCcccccccccCCCCceEEEecCceeeecCccceecccccccCHHHHHHHHHHHHH
Confidence 999999995 4677888999999 98622 1 11 111110 122222 22222111 0111110000
Q ss_pred cC-------------ChH-HHH----------HHHH--------HHhh------hHHHHHHH-HhhcCCCCCCccccH--
Q 035870 110 VL-------------NPY-FWQ----------MLRE--------IIKF------KDDVLGYL-EELESNPDIDRSETL-- 148 (842)
Q Consensus 110 ~~-------------~~~-~~~----------~~~~--------~~~~------~~~~~~~~-~~~~~~~~~~~~~s~-- 148 (842)
.. ++. ..+ .+.. .++. .......+ .. .+..|+
T Consensus 216 ~~~e~~~~~~~~~~~~p~~v~~ll~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~w~~lla~~-------~d~~S~~~ 288 (721)
T 3ayj_A 216 NPQGENVAMYPIANVDPAKIAAILNAATPPADALERIQTKYWPEFIAQYDGLTLGAAVREIVTVA-------FEKGTLPP 288 (721)
T ss_dssp CSSSSCCCSSCBTTBCHHHHHHHHTCSSCCHHHHHHHHHTHHHHHHHHHTTBBHHHHHHHHHHHH-------HHHTSSCC
T ss_pred HhhhcccccccccccchhhHHHHHHhhhcchhhhhhhhhhhhhhhhhhhccchhhhHHHHHHHHh-------hcccchhH
Confidence 00 000 000 0000 0000 00000000 00 023333
Q ss_pred -HHHHHhcCCCHHHHHHHHHHhhhcccCCCc-hhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhh
Q 035870 149 -GQFVNSRGYSELFQKAYLIPICGSIWSCPS-EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLE 226 (842)
Q Consensus 149 -~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~ 226 (842)
.+|++.. ..+. .....+-...+++.. ......+...++.+... .....++.+.||+++|+++|++.+.
T Consensus 289 ~~~~L~~~---~~~s-~~~~~~~~~~~~~gg~~~~~~~S~le~L~~~~~------~~~~~~~~i~GG~~~L~~aLa~~l~ 358 (721)
T 3ayj_A 289 VDGVLDVD---ESIS-YYVELFGRFGFGTGGFKPLYNISLVEMMRLILW------DYSNEYTLPVTENVEFIRNLFLKAQ 358 (721)
T ss_dssp GGGTSCHH---HHHH-HHHHHHHHHCSSSSCCGGGTTBBHHHHHHHHHT------TTTCEECCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHhc---cccH-HHHHHHHHHhhccCCCCCccchhHHHHHHHHhc------CCccceeEECCcHHHHHHHHHHhcc
Confidence 4444321 0111 111111111111111 22223355555554421 1234578899999999999999974
Q ss_pred hcCceEEeCCCee--EEEeCCCc-------EEE-EeCCCc--EEeCCEEEEccChHHHHH------hh------------
Q 035870 227 SWGCQIRTSSEVC--SVLPADKG-------CTI-VCGDGS--REFYNSCVMALHAPDALK------IL------------ 276 (842)
Q Consensus 227 ~~G~~i~~~~~V~--~I~~~~~~-------v~V-~~~~G~--~~~ad~VV~A~p~~~~~~------ll------------ 276 (842)
+ |++|+++++|+ +|.+++++ |.| .+.+|+ ++.||+||+|+|...+.. +-
T Consensus 359 ~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~ 437 (721)
T 3ayj_A 359 N-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAASQNLGDAGL 437 (721)
T ss_dssp H-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEEEEEESCGGG
T ss_pred c-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHhhcccccccccccccccccccc
Confidence 3 67899999999 99987655 888 456776 789999999999998864 21
Q ss_pred ----------cCC-C-C-------hHHHHhccccceee-ceEEEec-----CCCCcCCC
Q 035870 277 ----------GNQ-A-T-------FDETRILGAFQYVY-SDIFLHR-----DKRFMPQN 310 (842)
Q Consensus 277 ----------~~~-~-~-------~~~~~~l~~~~~~~-~~v~l~~-----~~~~~p~~ 310 (842)
.++ + + ....++++++.|.. +|+++.+ +.++|+..
T Consensus 438 ~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~ 496 (721)
T 3ayj_A 438 GLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQW 496 (721)
T ss_dssp TCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEE
T ss_pred ccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCccccc
Confidence 122 3 5 67789999999999 7999999 88998765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-26 Score=244.03 Aligned_cols=233 Identities=15% Similarity=0.154 Sum_probs=181.2
Q ss_pred HhccCCCCcccccccCCCcccHHHH---HH----HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEc
Q 035870 589 SLFLDESMTYSCAVFKSEDEDLKAA---QM----RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGIT 659 (842)
Q Consensus 589 ~~~l~~~~~ys~~~~~~~~~~l~~a---q~----~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid 659 (842)
+.|+++.+.|+++|+.....++..+ |. .+.+.+++.+.++++++|||||||+|.++..+++.. +.+|+|+|
T Consensus 28 ~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD 107 (317)
T 1dl5_A 28 EEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVE 107 (317)
T ss_dssp GGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEE
T ss_pred HHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEE
Confidence 3578888888888876654244444 33 677888999999999999999999999999999883 35799999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 660 LSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 660 ~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+|+++++.|+++++..+++ +++++++|+.+.. .+++||+|++..+++|++ +++.++|||||+++++....
T Consensus 108 ~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 108 YSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp SCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBG
T ss_pred CCHHHHHHHHHHHHHcCCC-CeEEEECChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCC
Confidence 9999999999999999887 5999999998855 567899999999999997 36788999999999986554
Q ss_pred C--Ccccccc-cCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHH-HHHHhHHHHHhccC
Q 035870 739 P--DERYNEY-RLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRK-NFMEKQSKILALGF 814 (842)
Q Consensus 739 ~--~~~~~~~-~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~-~~~~~~~~~~~~g~ 814 (842)
. +.....+ .....|+.++++|++.+|+...+...+++ . ++. ... ..|..|++.|+. +|.+.++...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~-~-~~~--~~~--~~y~~tl~~~~~~~f~~~~~~~~---- 248 (317)
T 1dl5_A 179 LSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNLLER-N-RKL--LRE--FPFNREILLVRSHIFVELVDLLT---- 248 (317)
T ss_dssp GGTBCEEEEEEEETTEEEEEEEEECCCCBCCGGGSCHHHH-H-HTT--CCC--CCEEEEEECTTHHHHHHHHHHHH----
T ss_pred CcccceEEEEEEeCCcEEEEEeccEEEEEccCcccccccc-c-hhh--hhc--ccchhhccCcchhhhhhhhhhhc----
Confidence 3 2222222 22356889999999999987776555544 2 211 112 228889999998 9998877643
Q ss_pred CHHHHHHHH-HHHHHHHH--hcccCccccc
Q 035870 815 NDKFIRTWE-YYFDYCAA--GFKSYTLGNY 841 (842)
Q Consensus 815 ~~~~~r~w~-~y~~~~~~--~f~~~~~~~~ 841 (842)
++|.|||+ |||++|++ +|+.|.++++
T Consensus 249 -~~~~~~~~~~yl~~~~~~~~F~~~~~~v~ 277 (317)
T 1dl5_A 249 -RRLTEIDGTFYYAGPNGVVEFLDDRMRIY 277 (317)
T ss_dssp -SCEEEETTEEEEECSSEEEEEETTEEEEE
T ss_pred -cccCccCceEEEECCCCeEEEeCCcEEEE
Confidence 45568898 89999986 7999988764
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=214.09 Aligned_cols=345 Identities=10% Similarity=0.136 Sum_probs=214.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-eCCeee-ecceEeecCCCchhHHHHHHHcCCCccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-FDGVDL-DLGFMVFNRVTYPNMMEFFESLGVDMEMSD 79 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~~g~~~-d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~ 79 (842)
||+|||||++||+||++|+++|++|+|+|+++++||++++.. ..|+.+ |.|+|++. ..++.+.++++++|.......
T Consensus 31 dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~ 109 (397)
T 3hdq_A 31 DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFH-TNSKDVFEYLSRFTEWRPYQH 109 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCE-ESCHHHHHHHHTSCCEEECCC
T ss_pred CEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccC-CChHHHHHHHHHhhhcccccc
Confidence 799999999999999999999999999999999999999987 578875 99999996 367889999999985332111
Q ss_pred ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCH
Q 035870 80 MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSE 159 (842)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 159 (842)
....+.+|+.+.++. ++..+..-....+.+. ... .++... . ....++.|+++|+.+. +++
T Consensus 110 --~~~~~~~g~l~~lP~--~~~~~~~l~~~~~~~~---~~~----------~~l~~~-~-~~~~~~~s~~e~~~~~-~G~ 169 (397)
T 3hdq_A 110 --RVLASVDGQLLPIPI--NLDTVNRLYGLNLTSF---QVE----------EFFASV-A-EKVEQVRTSEDVVVSK-VGR 169 (397)
T ss_dssp --BEEEEETTEEEEESC--CHHHHHHHHTCCCCHH---HHH----------HHHHHH-C-CCCSSCCBHHHHHHHH-HHH
T ss_pred --cceEEECCEEEEcCC--ChHHHHHhhccCCCHH---HHH----------HHHhhc-c-cCCCCCcCHHHHHHHh-cCH
Confidence 122335666666543 1111100000011111 111 111111 1 1123688999999987 788
Q ss_pred HHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhcccc-ccCCCCce-EEecCChhHHHHHHHHHhhhcCceEEeCCC
Q 035870 160 LFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLL-QLFGRPQW-LTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237 (842)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~ 237 (842)
.+.+.++.|++.+.|+.++++++.. .+. -+...... ...-...+ ..++||+.+++++|++.. |++|++|++
T Consensus 170 ~~~e~~~~py~~k~~~~~~~~Lsa~---~~~-Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~---g~~V~l~~~ 242 (397)
T 3hdq_A 170 DLYNKFFRGYTRKQWGLDPSELDAS---VTA-RVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSP---NIKVMLNTD 242 (397)
T ss_dssp HHHHHHTHHHHHHHHSSCGGGSBTT---TGG-GSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCST---TEEEEESCC
T ss_pred HHHHHHHHHHhCchhCCCHHHHHHH---HHH-hcCcccccCccchhhhheeccCCCHHHHHHHHHhcc---CCEEEECCe
Confidence 8999999999999999999999543 111 11100000 00111233 468999999999997644 899999999
Q ss_pred eeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccceeec-eEEEecCCCCcCCCCCCcce
Q 035870 238 VCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYS-DIFLHRDKRFMPQNPAAWSA 316 (842)
Q Consensus 238 V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~~~-~v~l~~~~~~~p~~~~~~~~ 316 (842)
|+++ +.++.+|+||+|+|.+.+... .+.+++|.+. .+.+.++..-... ..
T Consensus 243 v~~~-------------~~~~~~d~vI~T~P~d~~~~~-----------~~g~L~yrsl~~~~~~~~~~~~~~--~~--- 293 (397)
T 3hdq_A 243 YREI-------------ADFIPFQHMIYTGPVDAFFDF-----------CYGKLPYRSLEFRHETHDTEQLLP--TG--- 293 (397)
T ss_dssp GGGT-------------TTTSCEEEEEECSCHHHHTTT-----------TTCCCCEEEEEEEEEEESSSCSCS--SS---
T ss_pred EEec-------------cccccCCEEEEcCCHHHHHHH-----------hcCCCCCceEEEEEEEeccccCCC--Ce---
Confidence 9833 345679999999998766321 3567889985 4456666543222 12
Q ss_pred eeecccCCCceEEEEEcccccCCCCCCCCeEEecCCCCCCccee-EEEEc-----CCCCCCHHHHHHHHhhhh-hcCCCC
Q 035870 317 WNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTL-LKWST-----GHPVPSVAASKASLELDH-IQGKRG 389 (842)
Q Consensus 317 ~~~~~~~~~~~~v~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~-~~w~~-----~~p~~~~~~~~~~~~~~~-~~~~~~ 389 (842)
|.+...++.-..++.+-+- .... .+..++ ...+. .+|.++........+..+ ....+|
T Consensus 294 ~vn~~d~~p~tRi~e~k~~-~~~~--------------~~~t~i~~Ey~~~~~~pyYpv~~~~~~~~~~~y~~~a~~~~~ 358 (397)
T 3hdq_A 294 TVNYPNDYAYTRVSEFKHI-TGQR--------------HHQTSVVYEYPRAEGDPYYPVPRPENAELYKKYEALADAAQD 358 (397)
T ss_dssp EEECSSSSSCSEEEEHHHH-HCCC--------------CSSEEEEEEEEESSSSCCEECCSHHHHHHHHHHHHHHHHCTT
T ss_pred EEEeCCCCcceEEEeeccc-CCCC--------------CCCEEEEEEECCCCCccccccCchhHHHHHHHHHHHHhcCCC
Confidence 2332221222222222111 0000 011111 11111 356666555444433333 234579
Q ss_pred eEEecc---ccCCCCCchhHhHHHHHHHHhcCC
Q 035870 390 IWFCGA---YQGYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 390 l~~aG~---~~g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
|+|+|. |....+ +.++.+|..+|+.++..
T Consensus 359 v~~~GRlg~y~Y~~m-d~~i~~al~~~~~~~~~ 390 (397)
T 3hdq_A 359 VTFVGRLATYRYYNM-DQVVAQALATFRRLQGQ 390 (397)
T ss_dssp EEECSTTTTTCCCCH-HHHHHHHHHHHHHHHC-
T ss_pred EEEcccceEEEeccH-HHHHHHHHHHHHHHhcc
Confidence 999999 445555 89999999999999864
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=209.32 Aligned_cols=255 Identities=14% Similarity=0.155 Sum_probs=151.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCC-ee---------------eecceEeecC------
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDG-VD---------------LDLGFMVFNR------ 58 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g-~~---------------~d~G~~~~~~------ 58 (842)
+||||||||++||+||+.|+++|++|+|||+++++||+++|.+.+| +. ++.|.++...
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l 91 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFL 91 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeecccccee
Confidence 4899999999999999999999999999999999999999987655 22 3344333211
Q ss_pred CCchhHHHHHHHcCCCcccc--cceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHh-
Q 035870 59 VTYPNMMEFFESLGVDMEMS--DMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEE- 135 (842)
Q Consensus 59 ~~~~~~~~l~~~lGl~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (842)
...+.+.++++++|+..... .....+.+.+|+.+..+. .....+ ........ ....+.++..........
T Consensus 92 ~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~~p~--~~~~~~--~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 164 (453)
T 2bcg_G 92 MANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPA--NEIEAI--SSPLMGIF---EKRRMKKFLEWISSYKEDD 164 (453)
T ss_dssp ETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCS--SHHHHH--HCTTSCHH---HHHHHHHHHHHHHHCBTTB
T ss_pred ecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEECCC--ChHHHH--hhhccchh---hHHHHHHHHHHHHHhccCC
Confidence 13457789999999864321 111122234554443322 100000 01111111 111122222111111000
Q ss_pred hcCCCC-CCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHH----HHHHhhccccccCCCCceEEe
Q 035870 136 LESNPD-IDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSV----LSFCRNHHLLQLFGRPQWLTV 210 (842)
Q Consensus 136 ~~~~~~-~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 210 (842)
+..... ..+..|+.+|+++.+.++.+.+.+...+. .... ......|.... ..+.... ..+..+.|.++
T Consensus 165 p~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~--l~~~--~~~~~~p~~~~~~~~~~~~~s~---~~~~~~~~~~p 237 (453)
T 2bcg_G 165 LSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMA--LWTN--DDYLQQPARPSFERILLYCQSV---ARYGKSPYLYP 237 (453)
T ss_dssp GGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTS--CCSS--SGGGGSBHHHHHHHHHHHHHHH---HHHSSCSEEEE
T ss_pred chhhhccccccCCHHHHHHHhCCCHHHHHHHHHHHH--hccC--ccccCCchHHHHHHHHHHHHHH---HhhcCCceEee
Confidence 000000 12578999999998888776553322221 1111 01111122211 1222110 01123567789
Q ss_pred cCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC--CCcE-EEEeCCCcEEeCCEEEEccChH
Q 035870 211 RWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA--DKGC-TIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 211 ~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~--~~~v-~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+||++.++++|++.+++.|++|+++++|++|..+ ++++ .|++ +|+++.||+||+|++++
T Consensus 238 ~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 238 MYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF 299 (453)
T ss_dssp TTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred CCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence 9999999999999999999999999999999987 6665 5666 57789999999999876
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=200.44 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=144.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC--c-cCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL--A-KANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~-~~~~fD~i~s~ 703 (842)
++++.+|||||||+|.++..+++. +++|+|+|+|+++++.++++ ++++++|+.+. + ++++||+|+|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 467899999999999999999997 88999999999999999865 68899998775 3 56899999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC-CCCCHHHHHHHHhhcCCcEEE
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG-CLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~-~~~~~~~~~~~~~~~~gf~v~ 782 (842)
.+++|++++++..++++++++|||||++++..+..... ..+...|+.|.. ..++..++.+.+.+ +||+++
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~~ 179 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL--------YSLINFYIDPTHKKPVHPETLKFILEY-LGFRDV 179 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH--------HHHHHHTTSTTCCSCCCHHHHHHHHHH-HTCEEE
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh--------HHHHHHhcCccccccCCHHHHHHHHHH-CCCeEE
Confidence 99999998778999999999999999999987753321 123344555543 45788888888777 899999
Q ss_pred EEEecC----------ccHHHHHHHHHHH-HHHhHHHHHhccCCHH
Q 035870 783 QVENIG----------IHYYQTLRCWRKN-FMEKQSKILALGFNDK 817 (842)
Q Consensus 783 ~~~~~~----------~~y~~tl~~w~~~-~~~~~~~~~~~g~~~~ 817 (842)
.+..+. .+ +.++..|+++ |.++++.+..++|+++
T Consensus 180 ~~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~~f~~~ 224 (240)
T 3dli_A 180 KIEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRILFGPQ 224 (240)
T ss_dssp EEEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred EEEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhhccCcc
Confidence 998887 66 7899999999 9999999999888754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-20 Score=193.33 Aligned_cols=203 Identities=16% Similarity=0.184 Sum_probs=149.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--c
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--K 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~ 693 (842)
+.+..+++.+..+ +.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+++++++++++|+.+++ .
T Consensus 56 ~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 56 QDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL 133 (285)
T ss_dssp HHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC
T ss_pred HHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc
Confidence 3456677776644 679999999999999999998 88999999999999999999999888779999999999987 6
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccccc-Cccchhhhcc-------cCCCCCCC
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR-LSSDFIKEYI-------FPGGCLPS 765 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~-~~~~~~~~~i-------~p~~~~~~ 765 (842)
+++||+|++..+++|+++ +..+++++.++|||||++++..+........... .....+.... .......+
T Consensus 134 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRD 211 (285)
T ss_dssp SSCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBC
T ss_pred CCCceEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCC
Confidence 789999999999999976 7899999999999999999987754322111100 0001111111 11234568
Q ss_pred HHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCc
Q 035870 766 LSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYT 837 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~ 837 (842)
..++.+.+++ +||++++.+.++..+.. |...+ ... +.+.+++.+.+.+|+..+-.+.
T Consensus 212 ~~~l~~~l~~-aGf~v~~~~~~~~~~~~----~~~~~--------~~~--~~~~~l~~~e~~~~~~~~~~~~ 268 (285)
T 4htf_A 212 PTQVYLWLEE-AGWQIMGKTGVRVFHDY----LREKH--------QQR--DCYEALLELETRYCRQEPYITL 268 (285)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEESSSGGG----CSSTT--------HHH--HTHHHHHHHHHHHTTSTTGGGG
T ss_pred HHHHHHHHHH-CCCceeeeeeEEEeeec----ccccc--------cCc--ccHHHHHHHHHHhcCCChHHHH
Confidence 8999888887 89999999887643211 10000 000 1267889999999988766544
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=194.34 Aligned_cols=257 Identities=11% Similarity=0.102 Sum_probs=160.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEe-e--------------------CCeeeecceEeecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT-F--------------------DGVDLDLGFMVFNRV 59 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~-~--------------------~g~~~d~G~~~~~~~ 59 (842)
+||+|||||++||+||+.|+++|++|+|+|+++++||+++|.+ . .++.+|.|++++..
T Consensus 7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~- 85 (433)
T 1d5t_A 7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMA- 85 (433)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEET-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeec-
Confidence 4899999999999999999999999999999999999999988 1 34778899888743
Q ss_pred CchhHHHHHHHcCCCccc--ccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHh-h
Q 035870 60 TYPNMMEFFESLGVDMEM--SDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEE-L 136 (842)
Q Consensus 60 ~~~~~~~l~~~lGl~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 136 (842)
...+.++++++|+.... ......+.+.+|+.+..+. .....+ ...+.... ....+.++......+... +
T Consensus 86 -~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~--~~~~~~--~~~l~~~~---~~~~~~~~~~~~~~~~~~~p 157 (433)
T 1d5t_A 86 -NGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPS--TETEAL--ASNLMGMF---EKRRFRKFLVFVANFDENDP 157 (433)
T ss_dssp -TSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCC--SHHHHH--HCSSSCHH---HHHHHHHHHHHHHHCCTTCG
T ss_pred -cchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCC--CHHHHh--hCcccChh---hHHHHHHHHHHHHhhcccCc
Confidence 34677999999986432 1122222344555443322 100000 01111110 111122222111111000 0
Q ss_pred c-CCCCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCH-HHHHHHHhhccccccCCCCceEEecCCh
Q 035870 137 E-SNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSA-FSVLSFCRNHHLLQLFGRPQWLTVRWRS 214 (842)
Q Consensus 137 ~-~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 214 (842)
. ......+..|+.+|+++.+.++.+.+.+..+ +....+.++.+.+.... ..+..+... ...++...+++++||+
T Consensus 158 ~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~s---~~~~g~~~~~~p~gG~ 233 (433)
T 1d5t_A 158 KTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHA-LALYRTDDYLDQPCLETINRIKLYSES---LARYGKSPYLYPLYGL 233 (433)
T ss_dssp GGGTTCCTTTSBHHHHHHHTTCCHHHHHHHHHH-TSCCSSSGGGGSBSHHHHHHHHHHHHS---CCSSSCCSEEEETTCT
T ss_pred hhccccccccCCHHHHHHHcCCCHHHHHHHHHH-HHhccCCCccCCCHHHHHHHHHHHHHH---HHhcCCCcEEEeCcCH
Confidence 0 0000125789999999988887765543322 12222222323221111 112222221 1112345688999999
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.++++|++.+++.|++|+++++|++|..+++++.+...+|+++.||+||+|++++
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~ 289 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYV 289 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCC
Confidence 99999999999999999999999999999888876444578889999999999876
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=183.27 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=103.8
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
++|+.+|||||||+|.++..+++. ++++|+|+|+|++|++.|+++++..+...+|+++++|+.+++. ++||+|+++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 689999999999999999999986 4789999999999999999999998888899999999999874 469999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
.+++|+++++...++++++++|||||++++.+...+.
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 9999999877889999999999999999998876654
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=194.93 Aligned_cols=255 Identities=11% Similarity=0.125 Sum_probs=162.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC--------------------CeeeecceEeecCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--------------------GVDLDLGFMVFNRVTY 61 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~~~~~ 61 (842)
||+|||||++|+++|+.|++.|++|+|+|+++++||++++.+.+ ++.+|++++++. ..
T Consensus 22 dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~--~~ 99 (475)
T 3p1w_A 22 DVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFIL--VG 99 (475)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEE--TT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEee--cC
Confidence 89999999999999999999999999999999999999998642 468899988884 56
Q ss_pred hhHHHHHHHcCCCcccccc----eeeEecc-------CCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHH
Q 035870 62 PNMMEFFESLGVDMEMSDM----SFSVSLE-------KGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVL 130 (842)
Q Consensus 62 ~~~~~l~~~lGl~~~~~~~----~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (842)
..+.+++.+.|+....... .+.+... +++.+..+ .+....+. ...++.. ....+.++.....
T Consensus 100 g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VP--ss~~e~~~--~~lLs~~---eK~~l~kFL~~l~ 172 (475)
T 3p1w_A 100 GNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVP--ATDMEALV--SPLLSLM---EKNRCKNFYQYVS 172 (475)
T ss_dssp SHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECC--CSHHHHHT--CTTSCHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCC--CCHHHHhh--ccCCCHH---HHHHHHHHHHHHH
Confidence 6888999999987665322 1211111 22333222 22222232 1233322 2222333332222
Q ss_pred HHHHh-hcCCCCC-CccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhcc-ccccCCCCce
Q 035870 131 GYLEE-LESNPDI-DRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHH-LLQLFGRPQW 207 (842)
Q Consensus 131 ~~~~~-~~~~~~~-~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 207 (842)
.+... ....... .+..++.+|+++.++++.+.+.+..++.... ..+..+ .++...+..+.... ....++...+
T Consensus 173 ~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~-~~~~~~---~~a~~~l~ri~~y~~Sl~~yg~s~~ 248 (475)
T 3p1w_A 173 EWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYL-NDDYLK---QPAYLTLERIKLYMQSISAFGKSPF 248 (475)
T ss_dssp HCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCS-SSGGGG---SBHHHHHHHHHHHHHHHHHHSSCSE
T ss_pred hhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCccc---CCHHHHHHHHHHHHHHHhhcCCCce
Confidence 21100 0001111 1468999999999999887765444432211 111222 24433322111100 0111234678
Q ss_pred EEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEe-CCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 208 LTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLP-ADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 208 ~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~-~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+++||++.++++|++.+++.|++|+++++|++|.. ++++ +.|++.+|+++.||+||+++..
T Consensus 249 ~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~ 312 (475)
T 3p1w_A 249 IYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY 312 (475)
T ss_dssp EEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred EEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence 899999999999999999999999999999999998 5555 5799999989999999999753
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=180.06 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=131.2
Q ss_pred HHHHHHHc-CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 618 VSLLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 618 ~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
...+++.+ .++++.+|||||||+|.++..+++..+++|+|+|+|+.+++.|++++...+++++++++++|+.+++ +++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 34555665 5678899999999999999999998556999999999999999999999999888999999999988 678
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
+||+|+++.+++|++ +..+++++.++|||||++++.++......... ....++.. .+| .+++..++.+.+.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~~~~~~~~~~l~~ 185 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA--EIEDFWMD-AYP--EISVIPTCIDKMER 185 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH--HHHHHHHH-HCT--TCCBHHHHHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH--HHHHHHHH-hCC--CCCCHHHHHHHHHH
Confidence 999999999999993 68999999999999999999886533221110 11122222 123 36789999988887
Q ss_pred cCCcEEEEEEecC
Q 035870 776 ASRLCVEQVENIG 788 (842)
Q Consensus 776 ~~gf~v~~~~~~~ 788 (842)
+||+++....+.
T Consensus 186 -aGf~~v~~~~~~ 197 (257)
T 3f4k_A 186 -AGYTPTAHFILP 197 (257)
T ss_dssp -TTEEEEEEEECC
T ss_pred -CCCeEEEEEECC
Confidence 899999988776
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=190.97 Aligned_cols=248 Identities=17% Similarity=0.155 Sum_probs=144.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC-CCCCCCceeEe----------eCCeeeecceEeecCCCchhHHHHHH
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD-DYLGGHAKTVT----------FDGVDLDLGFMVFNRVTYPNMMEFFE 69 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~-~~~GG~~~s~~----------~~g~~~d~G~~~~~~~~~~~~~~l~~ 69 (842)
+||+|||||++||+||+.|+++|++|+|||++ +++||++.|.. ..++.+|.|++++. ..++.+.++++
T Consensus 45 ~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~-~~~~~~~~~~~ 123 (376)
T 2e1m_A 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLP-SFHPLTLALID 123 (376)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEE-TTCHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeec-chHHHHHHHHH
Confidence 58999999999999999999999999999999 99999999987 35789999999984 46788889999
Q ss_pred HcCCCccccccee----------------eEeccCC--------------------CceeeCCC-------CCCcchhh-
Q 035870 70 SLGVDMEMSDMSF----------------SVSLEKG--------------------HGCEWGSR-------NGLSSLFA- 105 (842)
Q Consensus 70 ~lGl~~~~~~~~~----------------~~~~~~g--------------------~~~~~~~~-------~~~~~~~~- 105 (842)
++|+......... ...++.. ..+...+. .....++.
T Consensus 124 ~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (376)
T 2e1m_A 124 KLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINE 203 (376)
T ss_dssp HTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHHHHHHCTHHHHH
T ss_pred HcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecccccccCHHHhcc
Confidence 9999866532110 0011100 00111000 00000000
Q ss_pred ---hhhc----cCChHHHHHHHHHHhhhHH-----------H---HHHHHhhcCCCCCCccccHHHHHH-hcCCCHHHHH
Q 035870 106 ---QKKN----VLNPYFWQMLREIIKFKDD-----------V---LGYLEELESNPDIDRSETLGQFVN-SRGYSELFQK 163 (842)
Q Consensus 106 ---~~~~----~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~~~~ 163 (842)
.... .....+...+..+.+.... . ........ ...+..|+.+|+. ..++++...+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lD~~S~~~~L~~~~g~s~~~~~ 280 (376)
T 2e1m_A 204 GFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVV---RDFDGYSMGRFLREYAEFSDEAVE 280 (376)
T ss_dssp HTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHH---HHHTTCBHHHHHHHTSCCCHHHHH
T ss_pred ccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccchHHH---HHHhCCCHHHHHhhccCCCHHHHH
Confidence 0000 0001111222222221000 0 00000000 0016889999998 7888887655
Q ss_pred HHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEe
Q 035870 164 AYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLP 243 (842)
Q Consensus 164 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~ 243 (842)
.+ ..+. + .......+....+... ........++.+.||+++|+++|++.+ +.+|++|++|++|.+
T Consensus 281 ~~-~~~~----~--~~~~~~~s~l~~l~~~-----~~~~~~~~~~~i~GG~~~l~~~l~~~l---~~~i~l~~~V~~I~~ 345 (376)
T 2e1m_A 281 AI-GTIE----N--MTSRLHLAFFHSFLGR-----SDIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMGQRMVRLEY 345 (376)
T ss_dssp HH-HHHT----T--CTTTTTSBHHHHHHHC-----SCSCTTCCEEEETTCTTHHHHHHHHHG---GGTEECSEEEEEEEE
T ss_pred HH-Hhhc----C--ccccchhhHHHHHHHh-----hhhccCCceEEECCcHHHHHHHHHHhc---CCcEEecCeEEEEEE
Confidence 33 2221 1 1112234555444332 122345789999999999999999999 568999999999999
Q ss_pred CCCcEEEEeCCCcEEeCCEEEEcc
Q 035870 244 ADKGCTIVCGDGSREFYNSCVMAL 267 (842)
Q Consensus 244 ~~~~v~V~~~~G~~~~ad~VV~A~ 267 (842)
+++++.|.+.+.......+|.+.+
T Consensus 346 ~~~gv~v~~~~~~~~~g~~~~~~~ 369 (376)
T 2e1m_A 346 YDPGRDGHHGELTGPGGPAVAIQT 369 (376)
T ss_dssp CCCC-------------CCEEEEE
T ss_pred CCCceEEEeCCCcCCCCCeeEEEe
Confidence 999887766554345566777765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=175.52 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=134.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
..++.+++.+.++++.+|||||||+|.++..+++..+++|+|+|+|+.+++.|+++++..++.++++++++|+.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 45567888888999999999999999999999988788999999999999999999999998889999999999887668
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAMS 774 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~ 774 (842)
+||+|++..+++|+++ +..++++++++|||||++++.+........ ...+...+.. ....+++..++.+.+.
T Consensus 103 ~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (256)
T 1nkv_A 103 KCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPA-----TEEIAQACGVSSTSDFLTLPGLVGAFD 175 (256)
T ss_dssp CEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCS-----SHHHHHTTTCSCGGGSCCHHHHHHHHH
T ss_pred CCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCC-----hHHHHHHHhcccccccCCHHHHHHHHH
Confidence 9999999999999976 799999999999999999998765432211 0111111111 1125678899988888
Q ss_pred hcCCcEEEEEEecC
Q 035870 775 VASRLCVEQVENIG 788 (842)
Q Consensus 775 ~~~gf~v~~~~~~~ 788 (842)
+ +||+++.+....
T Consensus 176 ~-aGf~~~~~~~~~ 188 (256)
T 1nkv_A 176 D-LGYDVVEMVLAD 188 (256)
T ss_dssp T-TTBCCCEEEECC
T ss_pred H-CCCeeEEEEeCC
Confidence 6 899987776543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=183.17 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC
Q 035870 611 KAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ 690 (842)
Q Consensus 611 ~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 690 (842)
..++...++.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+++ +++++++|+.+
T Consensus 19 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~ 96 (260)
T 1vl5_A 19 IHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQ 96 (260)
T ss_dssp ----CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-C
T ss_pred cccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHh
Confidence 3444555677888888889999999999999999999987 569999999999999999999988876 79999999999
Q ss_pred Cc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccC-CCCCCCHHH
Q 035870 691 LA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-GGCLPSLSR 768 (842)
Q Consensus 691 ~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~ 768 (842)
++ ++++||+|+++.+++|+++ +..++++++++|||||++++.+...+...... .....+.....+ .....+..+
T Consensus 97 l~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 172 (260)
T 1vl5_A 97 MPFTDERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFD--VFYNYVEKERDYSHHRAWKKSD 172 (260)
T ss_dssp CCSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHH--HHHHHHHHHHCTTCCCCCBHHH
T ss_pred CCCCCCCEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHH--HHHHHHHHhcCccccCCCCHHH
Confidence 88 6789999999999999986 78999999999999999999876655431110 000111111112 234567888
Q ss_pred HHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHH
Q 035870 769 ITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNF 802 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (842)
+.+.+.+ +||++..++.....+ .+..|.+++
T Consensus 173 ~~~~l~~-aGf~~~~~~~~~~~~--~~~~~~~~~ 203 (260)
T 1vl5_A 173 WLKMLEE-AGFELEELHCFHKTF--IFEDWCDRM 203 (260)
T ss_dssp HHHHHHH-HTCEEEEEEEEEEEE--EHHHHHHHT
T ss_pred HHHHHHH-CCCeEEEEEEeeccC--CHHHHHHhc
Confidence 8888877 899988887765432 245565543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=181.72 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=132.3
Q ss_pred ccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 035870 598 YSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAG 676 (842)
Q Consensus 598 ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~ 676 (842)
|..+++......+........+.+.....++++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+
T Consensus 6 Y~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 85 (276)
T 3mgg_A 6 YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85 (276)
T ss_dssp -----------------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHhhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 44444444444555544444455555566789999999999999999999988 47899999999999999999999988
Q ss_pred CCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-cCccchh-
Q 035870 677 LQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-RLSSDFI- 753 (842)
Q Consensus 677 l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~~~~~~~- 753 (842)
++ +++++++|+.+++ ++++||+|+++.+++|+++ +..+++++.++|||||++++.+.......+... .....++
T Consensus 86 ~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T 3mgg_A 86 IK-NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWN 162 (276)
T ss_dssp CC-SEEEEECCGGGCCSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHH
T ss_pred CC-CcEEEEcccccCCCCCCCeeEEEEechhhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHH
Confidence 76 7999999999987 6789999999999999987 789999999999999999998754322111110 0001111
Q ss_pred ---hhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCcc
Q 035870 754 ---KEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIH 790 (842)
Q Consensus 754 ---~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~ 790 (842)
......++...+..++.+.+.+ +||++++++....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~-aGf~~v~~~~~~~~ 201 (276)
T 3mgg_A 163 CLIRVQAYMKGNSLVGRQIYPLLQE-SGFEKIRVEPRMVY 201 (276)
T ss_dssp HHHHHHHHTTCCTTGGGGHHHHHHH-TTCEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHH-CCCCeEEEeeEEEE
Confidence 1112234455566777777776 89999988876543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=178.26 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=115.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC--Cc-c
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ--LA-K 693 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~ 693 (842)
..+.+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+|++|++.|++++... .+.....|+.. .. .
T Consensus 33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGG
T ss_pred HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccccc
Confidence 3456788888999999999999999999999998 889999999999999999987543 12323333222 11 2
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC-----------------------cccccccCcc
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD-----------------------ERYNEYRLSS 750 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~-----------------------~~~~~~~~~~ 750 (842)
+++||+|+++.+++|+..+....+++++.++| |||+++++...... .....+....
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 186 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREAG 186 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGGTT
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhhhh
Confidence 47999999999999998888899999999999 99999997543211 1111123467
Q ss_pred chhhhcccCCCCCCCHHHHH
Q 035870 751 DFIKEYIFPGGCLPSLSRIT 770 (842)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~ 770 (842)
.||++|+||+|.+|+..-+.
T Consensus 187 ~~i~~~~~p~g~~~~~~~~~ 206 (261)
T 3iv6_A 187 DVLDRALVPHGLIDKPTLLE 206 (261)
T ss_dssp HHHHHHCCCCTTCCHHHHHH
T ss_pred hHHHhccCCCCcccHHHHHH
Confidence 89999999999999876653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=172.01 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=126.5
Q ss_pred HHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++ .+. .+++++++|+.++.++++|
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~~ 108 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQW 108 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSCE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCce
Confidence 45555554 678889999999999999999998 8899999999999999988 344 3799999999888667899
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccccc--CccchhhhcccCC------CCCCCHHHH
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR--LSSDFIKEYIFPG------GCLPSLSRI 769 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~p~------~~~~~~~~~ 769 (842)
|+|+++.+++|++++....+++++.++|||||.+++.+...+........ ....++.+.+..+ ..+++..++
T Consensus 109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAEL 188 (218)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHH
T ss_pred eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHH
Confidence 99999999999998777999999999999999999998876543322111 0111221211111 235689999
Q ss_pred HHHHhhcCCcEEEEEEecCccH
Q 035870 770 TSAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 770 ~~~~~~~~gf~v~~~~~~~~~y 791 (842)
.+.+.+ +||+++..+..+.|+
T Consensus 189 ~~~l~~-aGf~v~~~~~~~~~~ 209 (218)
T 3ou2_A 189 TERLTA-LGWSCSVDEVHPGFL 209 (218)
T ss_dssp HHHHHH-TTEEEEEEEEETTEE
T ss_pred HHHHHH-CCCEEEeeeccccce
Confidence 888887 899988877665554
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=172.79 Aligned_cols=179 Identities=18% Similarity=0.235 Sum_probs=139.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
......+++.+.++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ +++++++|+.+++ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSC
T ss_pred CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCC
Confidence 344567788889999999999999999999999987 679999999999999999999988876 7999999999988 6
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccC-CCCCCCHHHHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFP-GGCLPSLSRITSA 772 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~ 772 (842)
+++||+|++..+++|+++ +..++++++++|||||++++.+...+..... ......+.....| +....+..++.+.
T Consensus 85 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVL--DEFVNHLNRLRDPSHVRESSLSEWQAM 160 (239)
T ss_dssp TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred CCcEEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhH--HHHHHHHHHhccccccCCCCHHHHHHH
Confidence 689999999999999976 8999999999999999999987765543110 0000011111111 2344678888888
Q ss_pred HhhcCCcEEEEEEecCccHHHHHHHHHHHH
Q 035870 773 MSVASRLCVEQVENIGIHYYQTLRCWRKNF 802 (842)
Q Consensus 773 ~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (842)
+.+ +||+++.+......+ ....|.+.+
T Consensus 161 l~~-aGf~~~~~~~~~~~~--~~~~w~~~~ 187 (239)
T 1xxl_A 161 FSA-NQLAYQDIQKWNLPI--QYDSWIKRG 187 (239)
T ss_dssp HHH-TTEEEEEEEEEEEEE--EHHHHHHHH
T ss_pred HHH-CCCcEEEEEeecCcc--CHHHHHHHc
Confidence 887 899998887764332 345666554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=168.95 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=118.8
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC-----------CCCCeEEEEcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG-----------LQDLIRLYLCD 687 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~-----------l~~~v~~~~~d 687 (842)
..+++.+.++++.+|||+|||+|..+..++++ |.+|+|+|+|++|++.|+++..... ...+++++++|
T Consensus 12 ~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 12 QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 34566677788999999999999999999998 8899999999999999998864210 12479999999
Q ss_pred ccCCc-cC-CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCC
Q 035870 688 YRQLA-KA-NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 688 ~~~~~-~~-~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~ 765 (842)
+.+++ .+ ++||+|++..+++|++.+....++++++++|||||++++..+..+.... .. .| ...+
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~----~~--------~~--~~~~ 156 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL----EG--------PP--FSVP 156 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS----SS--------CC--CCCC
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc----CC--------CC--CCCC
Confidence 99998 33 7999999999999999877889999999999999996665544332100 00 01 1246
Q ss_pred HHHHHHHHhhcCCcEEEEEEecC
Q 035870 766 LSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
.+++.+.+. . ||+++.++...
T Consensus 157 ~~el~~~~~-~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 157 QTWLHRVMS-G-NWEVTKVGGQD 177 (203)
T ss_dssp HHHHHHTSC-S-SEEEEEEEESS
T ss_pred HHHHHHHhc-C-CcEEEEecccc
Confidence 778776655 3 99998887754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=182.02 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=132.6
Q ss_pred cCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHH
Q 035870 567 QNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIE 646 (842)
Q Consensus 567 ~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~ 646 (842)
.+++....+.+.++||...+.|.... .++..+ .+...+ +.+...+....+.++.+|||||||+|.++..
T Consensus 13 ~~~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~------~~~~~~-~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~ 81 (298)
T 1ri5_A 13 DQAMEGKKEEIREHYNSIRERGRESR----QRSKTI------NIRNAN-NFIKACLIRLYTKRGDSVLDLGCGKGGDLLK 81 (298)
T ss_dssp --------------------------------CCSH------HHHHHH-HHHHHHHHHHHCCTTCEEEEETCTTTTTHHH
T ss_pred cchhhhhHHHHHHHHHHhhccccccc----ccchhh------hHHHHH-HHHHHHHHHHhCCCCCeEEEECCCCCHHHHH
Confidence 34556667789999987644332111 111111 122211 2222333233357889999999999999999
Q ss_pred HHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchhhh--cChhhHHHHHHHHH
Q 035870 647 IVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMIEA--VGHEFMEEFFGCCE 722 (842)
Q Consensus 647 la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~--~~~~~~~~~~~~~~ 722 (842)
+++....+|+|+|+|+.+++.|++++...++..+++++++|+.+++ ++++||+|++..+++| .+.+++..+++++.
T Consensus 82 l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~ 161 (298)
T 1ri5_A 82 YERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIA 161 (298)
T ss_dssp HHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHH
Confidence 8887445999999999999999999998887778999999998876 4679999999999988 44556899999999
Q ss_pred hccccCcEEEEEeecCCCcc------------cccccCc---cc--hhhhccc---CC-----CCCCCHHHHHHHHhhcC
Q 035870 723 SLLAEDGLLVLQFISIPDER------------YNEYRLS---SD--FIKEYIF---PG-----GCLPSLSRITSAMSVAS 777 (842)
Q Consensus 723 ~~LkpgG~~~~~~~~~~~~~------------~~~~~~~---~~--~~~~~i~---p~-----~~~~~~~~~~~~~~~~~ 777 (842)
++|||||++++......... +...... .. +-..|.+ +. ..+.+..++.+.+++ +
T Consensus 162 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~-a 240 (298)
T 1ri5_A 162 RHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKR-L 240 (298)
T ss_dssp HTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHT-T
T ss_pred HhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHH-c
Confidence 99999999999875532100 0000000 00 0001110 10 235678899888876 8
Q ss_pred CcEEEEEEecCccHHHHHH
Q 035870 778 RLCVEQVENIGIHYYQTLR 796 (842)
Q Consensus 778 gf~v~~~~~~~~~y~~tl~ 796 (842)
||+++..+.+...|...+.
T Consensus 241 Gf~~v~~~~~~~~~~~~~~ 259 (298)
T 1ri5_A 241 GLSLVERKGFIDFYEDEGR 259 (298)
T ss_dssp TEEEEEEEEHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHH
Confidence 9999999988776665553
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=166.86 Aligned_cols=181 Identities=11% Similarity=0.123 Sum_probs=134.1
Q ss_pred hhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCE
Q 035870 575 RNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCK 654 (842)
Q Consensus 575 ~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~ 654 (842)
+.+..+||...+.|.........+... ....+..++.. ++.+|||||||+|.++..+++. +.+
T Consensus 3 ~~~~~~y~~~a~~y~~~~~~~~~~~~~------------~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~-~~~ 65 (203)
T 3h2b_A 3 DDVSKAYSSPTFDAEALLGTVISAEDP------------DRVLIEPWATG----VDGVILDVGSGTGRWTGHLASL-GHQ 65 (203)
T ss_dssp CHHHHHHHCTTTCHHHHTCSSCCTTCT------------THHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHT-TCC
T ss_pred HHHHHHHhhHHHHHHHHhhhhccccHH------------HHHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhc-CCe
Confidence 456677777777665544322111100 12223333333 2789999999999999999998 889
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 655 YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 655 v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
|+|+|+|+++++.|+++. .+++++++|+.+++ ++++||+|+++.+++|++.+++..+++++.++|||||++++
T Consensus 66 v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 139 (203)
T 3h2b_A 66 IEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139 (203)
T ss_dssp EEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999873 27999999999988 67899999999999999877799999999999999999999
Q ss_pred EeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 734 QFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
......... .+.. . .......+..++.+.+.+ +||+++.++....
T Consensus 140 ~~~~~~~~~--~~~~-------~-~~~~~~~~~~~~~~~l~~-~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 140 SFFSGPSLE--PMYH-------P-VATAYRWPLPELAQALET-AGFQVTSSHWDPR 184 (203)
T ss_dssp EEECCSSCE--EECC-------S-SSCEEECCHHHHHHHHHH-TTEEEEEEEECTT
T ss_pred EEccCCchh--hhhc-------h-hhhhccCCHHHHHHHHHH-CCCcEEEEEecCC
Confidence 876654411 1110 0 001234578899888887 8999999887643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=174.44 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=126.0
Q ss_pred HHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 619 SLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 619 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
+.+++.+. ..++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+ +++++++|+.+++..++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~ 109 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEEK 109 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCSC
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCCC
Confidence 45555555 467899999999999999999998 47899999999999999999976554 79999999999885589
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccch-------------hhhcc--cCCC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDF-------------IKEYI--FPGG 761 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i--~p~~ 761 (842)
||+|++..+++|+++.....++++++++|||||++++.+...+............| +.... ....
T Consensus 110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3dtn_A 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLD 189 (234)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CC
T ss_pred ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 99999999999998866678999999999999999998877655321110000000 00000 1234
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 762 CLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 762 ~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
..++.+++.+.+++ +||+++++..
T Consensus 190 ~~~~~~~~~~ll~~-aGF~~v~~~~ 213 (234)
T 3dtn_A 190 KDIEMNQQLNWLKE-AGFRDVSCIY 213 (234)
T ss_dssp CCCBHHHHHHHHHH-TTCEEEEEEE
T ss_pred cccCHHHHHHHHHH-cCCCceeeee
Confidence 45688898888887 8999887654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=171.98 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=124.1
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++. .+++++++|+.+++..++||
T Consensus 35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD 108 (220)
T 3hnr_A 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSID 108 (220)
T ss_dssp HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCS
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeE
Confidence 45566666668899999999999999999998 8899999999999999998864 37999999999988338999
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-cC---ccchhh-hcccCCCCCCCHHHHHHHH
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-RL---SSDFIK-EYIFPGGCLPSLSRITSAM 773 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~~---~~~~~~-~~i~p~~~~~~~~~~~~~~ 773 (842)
+|+++.+++|+++.....+++++.++|||||.+++.+........... .. ...+.. ....+...+++.+++.+.+
T Consensus 109 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 109 TIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred EEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 999999999999855556999999999999999998765543221100 00 000000 0001113456889998888
Q ss_pred hhcCCcEEEEEEecC
Q 035870 774 SVASRLCVEQVENIG 788 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~ 788 (842)
.+ +||+++......
T Consensus 189 ~~-aGf~v~~~~~~~ 202 (220)
T 3hnr_A 189 EN-NGFHVTFTRLNH 202 (220)
T ss_dssp HH-TTEEEEEEECSS
T ss_pred HH-CCCEEEEeeccc
Confidence 87 899998876543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=166.21 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=129.5
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
+.+++.+.+.++.+|||||||+|.++..+++.. ..+|+|+|+|+++++.|++++...+++ +++++++|+.+++ +++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSS
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCC
Confidence 467777888899999999999999999999883 479999999999999999999998886 7999999999987 668
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
+||+|+++.+++|+++ +..+++++.++|||||++++.++......... .. ....+.+++.+.+.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~~--------~~~~~~~~~~~~l~~ 170 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----PP--------EEVYSEWEVGLILED 170 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----CG--------GGSCCHHHHHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----ch--------hcccCHHHHHHHHHH
Confidence 9999999999999976 79999999999999999999887655432110 11 123478888888877
Q ss_pred cCCcEEEEEEecCc
Q 035870 776 ASRLCVEQVENIGI 789 (842)
Q Consensus 776 ~~gf~v~~~~~~~~ 789 (842)
+||+++....++.
T Consensus 171 -~Gf~~~~~~~~~~ 183 (219)
T 3dh0_A 171 -AGIRVGRVVEVGK 183 (219)
T ss_dssp -TTCEEEEEEEETT
T ss_pred -CCCEEEEEEeeCC
Confidence 8999988877654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-18 Score=171.45 Aligned_cols=166 Identities=16% Similarity=0.172 Sum_probs=128.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
...+.+++.+..+++ +|||||||+|.++..+++.++.+|+|+|+|+.+++.|++++...++.++++++++|+.+++ ++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 344677777777777 9999999999999999998778999999999999999999999998889999999999987 66
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-----ccchhhhcccCCCCCCCHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-----SSDFIKEYIFPGGCLPSLSRI 769 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~p~~~~~~~~~~ 769 (842)
++||+|+++.+++|+.+ +..++++++++|||||++++.+............. ...|.. .+.+.....+.+++
T Consensus 110 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKE-FNRKNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHH-HHHHHSSHHHHHHH
T ss_pred ccccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHh-hhhhccccCCHHHH
Confidence 89999999999999965 89999999999999999999765443321111000 011111 00011223366788
Q ss_pred HHHHhhcCCcEEEEEEe
Q 035870 770 TSAMSVASRLCVEQVEN 786 (842)
Q Consensus 770 ~~~~~~~~gf~v~~~~~ 786 (842)
.+.+.+ +||++.++..
T Consensus 187 ~~~l~~-aGf~~v~~~~ 202 (219)
T 3dlc_A 187 QNVLDE-IGISSYEIIL 202 (219)
T ss_dssp HHHHHH-HTCSSEEEEE
T ss_pred HHHHHH-cCCCeEEEEe
Confidence 877776 8998776654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-19 Score=177.54 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=117.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCC-HHHHHHH---HHHHHHcCCCCCeEEEEccccCCcc--CCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLS-EEQLKYA---EMKVKEAGLQDLIRLYLCDYRQLAK--ANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s-~~~~~~a---~~~~~~~~l~~~v~~~~~d~~~~~~--~~~fD~ 699 (842)
.+++.+|||||||+|.++..+++. ++.+|+|+|+| +.|++.| ++++...+++ +++++++|+.+++. .+.+|.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADS 100 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEE
Confidence 467889999999999999999965 67899999999 6666666 8888787876 79999999999962 244555
Q ss_pred EEEcchhh----hcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCH-----HHHH
Q 035870 700 IISCEMIE----AVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSL-----SRIT 770 (842)
Q Consensus 700 i~s~~~~~----~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~-----~~~~ 770 (842)
|+++.... |... ....++++++++|||||++++....... +... .+... ..| .++. .++.
T Consensus 101 i~~~~~~~~~~~~~~~-~~~~~l~~~~r~LkpGG~l~i~~~~~~~--~~~~----~~~~~-~~~---~~~~~~~~~~el~ 169 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIK-PNRDILSNVADLAKKEAHFEFVTTYSDS--YEEA----EIKKR-GLP---LLSKAYFLSEQYK 169 (225)
T ss_dssp EEEESCCHHHHHHHHT-TCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHH
T ss_pred EEEeCCCcHHhhhhhc-chHHHHHHHHHhcCCCcEEEEEEecccc--chhc----hhhhc-CCC---CCChhhcchHHHH
Confidence 55543322 2111 1367899999999999999994322221 1110 00000 011 1122 2366
Q ss_pred HHHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhHHHHHhccCCHHHHH
Q 035870 771 SAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKILALGFNDKFIR 820 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~g~~~~~~r 820 (842)
+.+.+ +||++.+.+.++.+|..++ +..|.++...||||+|.|
T Consensus 170 ~~l~~-aGf~v~~~~~~~~~~~~~~-------~~~w~~~~~~~~~~~f~r 211 (225)
T 3p2e_A 170 AELSN-SGFRIDDVKELDNEYVKQF-------NSLWAKRLAFGRKRSFFR 211 (225)
T ss_dssp HHHHH-HTCEEEEEEEECHHHHTTC-------CSHHHHHHHHSSCCCEEE
T ss_pred HHHHH-cCCCeeeeeecCHHHHHHH-------HHHHhcccCccchhHHHH
Confidence 66766 8999999999999998775 223444445688888866
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=168.31 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=124.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
..++..+..+++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...+++++++|+.+++++++||
T Consensus 57 ~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 134 (235)
T 3lcc_A 57 VHLVDTSSLPLG-RALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD 134 (235)
T ss_dssp HHHHHTTCSCCE-EEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred HHHHHhcCCCCC-CEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence 345555555554 9999999999999999875 88999999999999999999887655568999999999988667999
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
+|+++.+++|++.+....+++++.++|||||++++..+....... ... ...+.+++.+.+.+ +|
T Consensus 135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-----~~~----------~~~~~~~~~~~l~~-~G 198 (235)
T 3lcc_A 135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG-----GPP----------YKVDVSTFEEVLVP-IG 198 (235)
T ss_dssp EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS-----CSS----------CCCCHHHHHHHHGG-GT
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC-----CCC----------ccCCHHHHHHHHHH-cC
Confidence 999999999999778999999999999999999997765432110 000 11467888887776 89
Q ss_pred cEEEEEEecCc
Q 035870 779 LCVEQVENIGI 789 (842)
Q Consensus 779 f~v~~~~~~~~ 789 (842)
|+++.++....
T Consensus 199 f~~~~~~~~~~ 209 (235)
T 3lcc_A 199 FKAVSVEENPH 209 (235)
T ss_dssp EEEEEEEECTT
T ss_pred CeEEEEEecCC
Confidence 99999887643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-17 Score=167.62 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc
Q 035870 610 LKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 689 (842)
+...+......+++.+...++.+|||||||+|.++..+++....+|+++|+|+.+++.|++++... .+++++++|+.
T Consensus 74 ~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T 1xtp_A 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHH
Confidence 344555666778888887889999999999999999999885568999999999999999987654 37999999999
Q ss_pred CCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHH
Q 035870 690 QLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSR 768 (842)
Q Consensus 690 ~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 768 (842)
+++ ++++||+|++..+++|++++++..++++++++|||||++++.+.......+. . .. .......+..+
T Consensus 151 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~-~~-~~~~~~~~~~~ 220 (254)
T 1xtp_A 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL--------V-DK-EDSSLTRSDIH 220 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE--------E-ET-TTTEEEBCHHH
T ss_pred HCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce--------e-cc-cCCcccCCHHH
Confidence 887 6689999999999999988779999999999999999999987543322110 0 00 01112347888
Q ss_pred HHHHHhhcCCcEEEEEEec
Q 035870 769 ITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~ 787 (842)
+.+.+.+ +||+++.++..
T Consensus 221 ~~~~l~~-aGf~~~~~~~~ 238 (254)
T 1xtp_A 221 YKRLFNE-SGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHHH-HTCCEEEEEEC
T ss_pred HHHHHHH-CCCEEEEeeec
Confidence 8888876 89999887764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=176.96 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=127.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ--DLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~~~~ 693 (842)
.....+++.+..+++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. .+++++++|+.+++.
T Consensus 70 ~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 70 SEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 344566666665555 9999999999999999998 889999999999999999999876632 489999999999886
Q ss_pred CCCccEEEE-cchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC--------------------ccch
Q 035870 694 ANKYDRIIS-CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL--------------------SSDF 752 (842)
Q Consensus 694 ~~~fD~i~s-~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~--------------------~~~~ 752 (842)
+++||+|++ ..+++|++.+....++++++++|||||++++............... ....
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEI 227 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccE
Confidence 789999986 4778888877789999999999999999999877654211000000 0000
Q ss_pred hhhcccCCC-------------CCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 753 IKEYIFPGG-------------CLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 753 ~~~~i~p~~-------------~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
..-.+++.+ .+.+.+++.+.+++ +||+++.++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~-aGF~v~~~~~~~ 275 (299)
T 3g2m_A 228 QEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVR-SGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHH-TTCEEEEEEEEC
T ss_pred EEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHH-CCCEEEEEEecC
Confidence 000111111 14589999988887 899999998875
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=176.54 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=129.9
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHH--HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEE
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIV--KRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRII 701 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la--~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~ 701 (842)
...++++.+|||||||+|.++..++ ..++++|+|+|+|+.+++.|++++...++.++++++++|+.+++..++||+|+
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~ 192 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLT 192 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEE
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEE
Confidence 3346789999999999999999985 33688999999999999999999999888878999999999988448999999
Q ss_pred EcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-------cCccchhhhcccCCC------CCCCHH
Q 035870 702 SCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-------RLSSDFIKEYIFPGG------CLPSLS 767 (842)
Q Consensus 702 s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~------~~~~~~ 767 (842)
++.+++|+++ +....++++++++|||||++++.++..+....... .....+..++.++.. .+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 9999999965 33456899999999999999998876543221111 111112233333221 456899
Q ss_pred HHHHHHhhcCCcEEEEEEecCccH
Q 035870 768 RITSAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~~~~~~y 791 (842)
++.+.+++ +||+++.++....++
T Consensus 273 ~~~~~l~~-aGF~~v~~~~~~~~~ 295 (305)
T 3ocj_A 273 QTRAQLEE-AGFTDLRFEDDRARL 295 (305)
T ss_dssp HHHHHHHH-TTCEEEEEECCTTSS
T ss_pred HHHHHHHH-CCCEEEEEEcccCce
Confidence 99988887 899999988765554
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=164.11 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEEEccccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQD----LIRLYLCDYRQL 691 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~----~v~~~~~d~~~~ 691 (842)
..+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+++++.|++++...++++ +++++++|+...
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 3455666666678889999999999999999987 33799999999999999999998877764 799999999777
Q ss_pred c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 692 A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 692 ~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+ +.++||+|+++.+++|+++.....+++++.++|||||.+++..
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 6 5589999999999999998777999999999999999777644
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-17 Score=163.19 Aligned_cols=120 Identities=19% Similarity=0.291 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEEEccccC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQD----LIRLYLCDYRQ 690 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~----~v~~~~~d~~~ 690 (842)
...+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...++++ +++++++|+..
T Consensus 16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (219)
T 3jwg_A 16 QRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY 95 (219)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc
Confidence 34455556655567889999999999999999987 33799999999999999999998777764 89999999987
Q ss_pred Cc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 691 LA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 691 ~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.+ .+++||+|++..+++|+++.....+++++.++|||||.++...
T Consensus 96 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 96 RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 77 5689999999999999998667899999999999999666543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=161.52 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=119.3
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
..++.. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. +++++++|+.+++.+++||
T Consensus 35 ~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~fD 104 (211)
T 3e23_A 35 TKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAYD 104 (211)
T ss_dssp HHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSCEE
T ss_pred HHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCcEE
Confidence 344444 457889999999999999999998 889999999999999999987 4678899999988778999
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
+|+++.+++|++.+++..+++++.++|||||++++............. ..+ ....+.+++.+.+.+ +|
T Consensus 105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~l~~-aG 172 (211)
T 3e23_A 105 AVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKL-------ARY----YNYPSEEWLRARYAE-AG 172 (211)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTT-------SCE----ECCCCHHHHHHHHHH-HC
T ss_pred EEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccccc-------chh----ccCCCHHHHHHHHHh-CC
Confidence 999999999999777999999999999999999998654433211111 011 134688999888887 89
Q ss_pred -cEEEEEEec
Q 035870 779 -LCVEQVENI 787 (842)
Q Consensus 779 -f~v~~~~~~ 787 (842)
|+++.++..
T Consensus 173 ~f~~~~~~~~ 182 (211)
T 3e23_A 173 TWASVAVESS 182 (211)
T ss_dssp CCSEEEEEEE
T ss_pred CcEEEEEEec
Confidence 998887654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=169.85 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=118.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
+++.+|||||||+|.++..+++....+|+++|+|+.+++.|++++...+ ..+++++++|+.+++ ++++||+|++..++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 3688999999999999999988755699999999999999999987654 236899999998887 55689999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
+|+++.....+++++.++|||||++++.+....... .+.. ..+....+..++.+.+.+ +||+++..+.
T Consensus 157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~l~~-aGf~~~~~~~ 224 (241)
T 2ex4_A 157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV--ILDD---------VDSSVCRDLDVVRRIICS-AGLSLLAEER 224 (241)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE--EEET---------TTTEEEEBHHHHHHHHHH-TTCCEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc--eecc---------cCCcccCCHHHHHHHHHH-cCCeEEEeee
Confidence 999987678999999999999999999876654311 0000 011123478888888887 8999988876
Q ss_pred c
Q 035870 787 I 787 (842)
Q Consensus 787 ~ 787 (842)
.
T Consensus 225 ~ 225 (241)
T 2ex4_A 225 Q 225 (241)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=179.40 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=119.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEccccCC------
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA-----G-L-QDLIRLYLCDYRQL------ 691 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-----~-l-~~~v~~~~~d~~~~------ 691 (842)
+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++.. | + ..+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 568899999999999999999987 4679999999999999999998765 3 2 24899999999886
Q ss_pred c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHH
Q 035870 692 A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRIT 770 (842)
Q Consensus 692 ~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~ 770 (842)
+ ++++||+|+++.+++|+++ +..++++++++|||||++++.++............ ... .+........+..++.
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 235 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQ-DPI--LYGECLGGALYLEDFR 235 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHH-CHH--HHHTTCTTCCBHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhh-hHH--HhhcccccCCCHHHHH
Confidence 5 5689999999999999977 89999999999999999999877654322111111 111 1112223456778888
Q ss_pred HHHhhcCCcEEEEEEe
Q 035870 771 SAMSVASRLCVEQVEN 786 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~ 786 (842)
+.+.+ +||++..+..
T Consensus 236 ~ll~~-aGF~~v~~~~ 250 (383)
T 4fsd_A 236 RLVAE-AGFRDVRLVS 250 (383)
T ss_dssp HHHHH-TTCCCEEEEE
T ss_pred HHHHH-CCCceEEEEe
Confidence 88887 8997665544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=169.41 Aligned_cols=167 Identities=11% Similarity=0.151 Sum_probs=126.2
Q ss_pred hhhcccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCC-CcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCc
Q 035870 562 RHISRQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKS-EDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGW 640 (842)
Q Consensus 562 ~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~-~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~ 640 (842)
.+++...+.+.-.+.+...|+...++|+..+...+..+..-+.. ..-...+...+..+.-...+.++++++|||||||+
T Consensus 54 ~~vl~~~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~ 133 (298)
T 3fpf_A 54 KHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGP 133 (298)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCS
T ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCc
Confidence 34445566777788899999999999988777655333210000 00011122233333334567889999999999999
Q ss_pred hHHH-HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHH
Q 035870 641 GTLA-IEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFG 719 (842)
Q Consensus 641 G~~~-~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~ 719 (842)
|.++ ..+|+.++++|+|+|+|++|++.|++++++.|+ ++++++++|+.+++ +++||+|++... +++ ...+++
T Consensus 134 G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~a~---~~d--~~~~l~ 206 (298)
T 3fpf_A 134 LPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVAAL---AEP--KRRVFR 206 (298)
T ss_dssp SCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEECTT---CSC--HHHHHH
T ss_pred cHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEECCC---ccC--HHHHHH
Confidence 9766 555665799999999999999999999999999 79999999999886 689999998654 333 789999
Q ss_pred HHHhccccCcEEEEEe
Q 035870 720 CCESLLAEDGLLVLQF 735 (842)
Q Consensus 720 ~~~~~LkpgG~~~~~~ 735 (842)
++.++|||||++++..
T Consensus 207 el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 207 NIHRYVDTETRIIYRT 222 (298)
T ss_dssp HHHHHCCTTCEEEEEE
T ss_pred HHHHHcCCCcEEEEEc
Confidence 9999999999999965
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=173.14 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=123.2
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++ . +...+++++++|+.+++ ++++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 5678899999999999999999987 889999999999999999987 2 33358999999999887 678999999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC-cccccc-cCccchhhhcccC---CCCCCCHHHHHHHHhhcCCc
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD-ERYNEY-RLSSDFIKEYIFP---GGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~p---~~~~~~~~~~~~~~~~~~gf 779 (842)
+++|+++ ...+++++.++|||||++++. +..++ ...... .....+....-+| ....++..++.+.+.+ +||
T Consensus 113 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf 188 (263)
T 2yqz_A 113 LWHLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRR-LGL 188 (263)
T ss_dssp CGGGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHH-TTC
T ss_pred chhhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHH-cCC
Confidence 9999986 789999999999999999987 32221 110000 0011112222122 1123467777777776 899
Q ss_pred EEEEEEecCccHHHHHHHHHHHHH
Q 035870 780 CVEQVENIGIHYYQTLRCWRKNFM 803 (842)
Q Consensus 780 ~v~~~~~~~~~y~~tl~~w~~~~~ 803 (842)
+++..+.....+..+...+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~ 212 (263)
T 2yqz_A 189 KPRTREVARWREERTPREALEALS 212 (263)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHH
T ss_pred CcceEEEeeeecCCCHHHHHHHHH
Confidence 987765544433334455544443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=167.07 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=119.8
Q ss_pred HHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 620 LLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 620 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
.+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... +++++++|+.++.++++||
T Consensus 32 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD 105 (250)
T 2p7i_A 32 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYD 105 (250)
T ss_dssp HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEE
T ss_pred HHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCccc
Confidence 3344333 347789999999999999999987 67999999999999999988532 6999999998887678999
Q ss_pred EEEEcchhhhcChhhHHHHHHHHH-hccccCcEEEEEeecCCCccccc------ccCccchhhhc-ccCCCCCCCHHHHH
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCE-SLLAEDGLLVLQFISIPDERYNE------YRLSSDFIKEY-IFPGGCLPSLSRIT 770 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~-~~LkpgG~~~~~~~~~~~~~~~~------~~~~~~~~~~~-i~p~~~~~~~~~~~ 770 (842)
+|++..+++|+++ +..++++++ ++|||||++++.+.......... ......+.... ...+....+..++.
T Consensus 106 ~v~~~~~l~~~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (250)
T 2p7i_A 106 NIVLTHVLEHIDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183 (250)
T ss_dssp EEEEESCGGGCSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred EEEEhhHHHhhcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHH
Confidence 9999999999976 789999999 99999999999876544221100 00000000000 11223456889998
Q ss_pred HHHhhcCCcEEEEEEec
Q 035870 771 SAMSVASRLCVEQVENI 787 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~~ 787 (842)
+.+.+ +||+++..+.+
T Consensus 184 ~~l~~-~Gf~~~~~~~~ 199 (250)
T 2p7i_A 184 RDASR-AGLQVTYRSGI 199 (250)
T ss_dssp HHHHH-TTCEEEEEEEE
T ss_pred HHHHH-CCCeEEEEeee
Confidence 88877 89999988754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-16 Score=160.78 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=118.0
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...+++++++|+.+++ ++++||+|++..+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 125 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINS 125 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcCh
Confidence 357889999999999999999998 889999999999999999874 2247999999999988 6789999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHHhhcCCcEEEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
++|+++ +..++++++++|||||++++.+......... ..+...+-. ......+..++.+.+.+ +||++++.
T Consensus 126 l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~~~~ 197 (242)
T 3l8d_A 126 LEWTEE--PLRALNEIKRVLKSDGYACIAILGPTAKPRE-----NSYPRLYGKDVVCNTMMPWEFEQLVKE-QGFKVVDG 197 (242)
T ss_dssp TTSSSC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGG-----GGGGGGGTCCCSSCCCCHHHHHHHHHH-TTEEEEEE
T ss_pred HhhccC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhh-----hhhhhhccccccccCCCHHHHHHHHHH-cCCEEEEe
Confidence 999976 7899999999999999999988654432211 111111111 12344678888887776 89999887
Q ss_pred Eec
Q 035870 785 ENI 787 (842)
Q Consensus 785 ~~~ 787 (842)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 754
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=153.93 Aligned_cols=151 Identities=12% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.+...++.+|||||||+|.++..+++. +.+|+++|+|+.+++.+++++...+++ +++++++|+.+++.+++||+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~ 100 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTFDRQYDF 100 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCCCCCEEE
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCCCCCceE
Confidence 4556666678889999999999999999998 889999999999999999999888875 69999999988765679999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
|+++.+++|++.+....+++++.++|||||++++.+...+.... .. .+.....+.+++.+.+.+ |
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~----~~--------~~~~~~~~~~~l~~~~~~---f 165 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP----CT--------VGFPFAFKEGELRRYYEG---W 165 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC----CC--------SCCSCCBCTTHHHHHTTT---S
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC----CC--------CCCCCccCHHHHHHHhcC---C
Confidence 99999999999777999999999999999998886554433210 00 111233467777766542 8
Q ss_pred EEEEEEec
Q 035870 780 CVEQVENI 787 (842)
Q Consensus 780 ~v~~~~~~ 787 (842)
+++..+..
T Consensus 166 ~~~~~~~~ 173 (199)
T 2xvm_A 166 ERVKYNED 173 (199)
T ss_dssp EEEEEECC
T ss_pred eEEEeccc
Confidence 88877653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=171.12 Aligned_cols=171 Identities=13% Similarity=0.181 Sum_probs=136.7
Q ss_pred HHHHHHHHcCC--CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 617 KVSLLIEKARV--SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 617 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
....+++.+.. .++.+|||||||+|.++..+++. ++.+++++|+| .+++.|++++...++.++++++.+|+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence 34566777777 78899999999999999999988 57899999999 9999999999998888789999999987663
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc-ccCccchhhhcccCCCCCCCHHHHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE-YRLSSDFIKEYIFPGGCLPSLSRITSA 772 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (842)
.+.||+|++..+++|++++....++++++++|||||++++.+...++..... .....++......+++...+.+++.+.
T Consensus 230 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l 309 (335)
T 2r3s_A 230 GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESM 309 (335)
T ss_dssp CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHH
T ss_pred CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHH
Confidence 3459999999999999887789999999999999999999887765432111 111111111222356778899999988
Q ss_pred HhhcCCcEEEEEEecCc
Q 035870 773 MSVASRLCVEQVENIGI 789 (842)
Q Consensus 773 ~~~~~gf~v~~~~~~~~ 789 (842)
+.+ +||++.++..+..
T Consensus 310 l~~-aGf~~~~~~~~~~ 325 (335)
T 2r3s_A 310 FSN-AGFSHSQLHSLPT 325 (335)
T ss_dssp HHH-TTCSEEEEECCTT
T ss_pred HHH-CCCCeeeEEECCC
Confidence 887 8999988877643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=160.56 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=114.3
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----------cC------CCCCeEEEEcccc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKE----------AG------LQDLIRLYLCDYR 689 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~----------~~------l~~~v~~~~~d~~ 689 (842)
...++.+|||+|||+|..+..+|+. |.+|+|||+|+.+++.|+++... .+ ...+++++++|+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 3467889999999999999999998 88999999999999999877531 00 1247999999999
Q ss_pred CCcc-C-CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHH
Q 035870 690 QLAK-A-NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLS 767 (842)
Q Consensus 690 ~~~~-~-~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (842)
+++. + ++||+|++..+++|++.+....+++++.++|||||++++.++....... . .|. ...+.+
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----~---------g~~-~~~~~~ 209 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----A---------GPP-FYVPSA 209 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----C---------CSS-CCCCHH
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----C---------CCC-CCCCHH
Confidence 9883 2 8999999999999999878889999999999999999876554332110 0 010 124778
Q ss_pred HHHHHHhhcCCcEEEEEEecC
Q 035870 768 RITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~~~~ 788 (842)
++.+.+.. +|+++..+...
T Consensus 210 el~~~l~~--~f~v~~~~~~~ 228 (252)
T 2gb4_A 210 ELKRLFGT--KCSMQCLEEVD 228 (252)
T ss_dssp HHHHHHTT--TEEEEEEEEEE
T ss_pred HHHHHhhC--CeEEEEEeccc
Confidence 88877764 59998877643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=161.86 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=122.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
..+.+.+...++.+|||||||+|.++..+++....+|+|+|+|+++++.|+++.. ..+++++++|+.+++ ++++|
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCe
Confidence 4566667767899999999999999999999833399999999999999998865 348999999999988 67899
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCc------c-cccccCccch-hhhcccC----------
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE------R-YNEYRLSSDF-IKEYIFP---------- 759 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~------~-~~~~~~~~~~-~~~~i~p---------- 759 (842)
|+|++..+++|+.+ +..++++++++|||||++++........ + +........+ +..|...
T Consensus 110 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (253)
T 3g5l_A 110 NVVLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGE 187 (253)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTE
T ss_pred EEEEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccc
Confidence 99999999999965 8999999999999999999975432100 0 0000000000 0011000
Q ss_pred --CCCCCCHHHHHHHHhhcCCcEEEEEEecCcc
Q 035870 760 --GGCLPSLSRITSAMSVASRLCVEQVENIGIH 790 (842)
Q Consensus 760 --~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~ 790 (842)
.....+.+++.+.+.+ +||+++.+.+..+.
T Consensus 188 ~~~~~~~t~~~~~~~l~~-aGF~~~~~~e~~~~ 219 (253)
T 3g5l_A 188 DVQKYHRTVTTYIQTLLK-NGFQINSVIEPEPA 219 (253)
T ss_dssp EEEEECCCHHHHHHHHHH-TTEEEEEEECCCCC
T ss_pred cCccEecCHHHHHHHHHH-cCCeeeeeecCCCc
Confidence 0112388999988887 89999999876543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=164.59 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
+....+++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++. .+++++++|+.+++++
T Consensus 20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~ 93 (259)
T 2p35_A 20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKPA 93 (259)
T ss_dssp HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCCS
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCcc
Confidence 44457788888888999999999999999999988 5789999999999999999871 3799999999988766
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc----ccCccchhhhcc---cCCCCCCCHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE----YRLSSDFIKEYI---FPGGCLPSLS 767 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~----~~~~~~~~~~~i---~p~~~~~~~~ 767 (842)
++||+|+++.+++|+++ +..++++++++|||||++++............ ......|..... .+...+++..
T Consensus 94 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T 2p35_A 94 QKADLLYANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS 171 (259)
T ss_dssp SCEEEEEEESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHH
T ss_pred CCcCEEEEeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHH
Confidence 89999999999999976 89999999999999999999876433221110 000011211110 1133567889
Q ss_pred HHHHHHhhcCCcEEEEEE
Q 035870 768 RITSAMSVASRLCVEQVE 785 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~ 785 (842)
++.+.+.+ +||++...+
T Consensus 172 ~~~~~l~~-aGf~v~~~~ 188 (259)
T 2p35_A 172 DYFNALSP-KSSRVDVWH 188 (259)
T ss_dssp HHHHHHGG-GEEEEEEEE
T ss_pred HHHHHHHh-cCCceEEEE
Confidence 99888887 899865444
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=165.44 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=121.4
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccE
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~ 699 (842)
.+++.+.+.++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++. .+++++++|+.+++.+++||+
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCE
Confidence 566777788899999999999999999998 5899999999999999999875 378999999999886689999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc------ccCCCCCCCHHHHHHHH
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY------IFPGGCLPSLSRITSAM 773 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~p~~~~~~~~~~~~~~ 773 (842)
|+++.+++|+++ +..++++++++|||||++++......... .........+.+. .......++..++.+.+
T Consensus 121 v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 121 VFSNAMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNIK-YILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTTH-HHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred EEEcchhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcchH-HHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 999999999976 88999999999999999999776543210 0000000011111 01112456888998888
Q ss_pred hhcCCcEEEEEEec
Q 035870 774 SVASRLCVEQVENI 787 (842)
Q Consensus 774 ~~~~gf~v~~~~~~ 787 (842)
.+ +||+++.++..
T Consensus 198 ~~-aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EK-QGFDVTYAALF 210 (279)
T ss_dssp HH-HTEEEEEEEEE
T ss_pred HH-cCCEEEEEEEe
Confidence 77 89999877654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-17 Score=178.70 Aligned_cols=178 Identities=21% Similarity=0.175 Sum_probs=139.2
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
+.+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.++++++++|+++++..++||
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 56677777788999999999999999999988456999999996 89999999999999889999999999987447899
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC------cccccccCccchhhhcccCCCCCCCHHHHHHH
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD------ERYNEYRLSSDFIKEYIFPGGCLPSLSRITSA 772 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (842)
+|+|..+++|+..+.....+.+++++|||||++++...+... ..+........|+...++|+..++++.++...
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~ 198 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVD 198 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHHH
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHHh
Confidence 999999999998777888899999999999999975433211 11111111234555568999999988877532
Q ss_pred HhhcCCcEEEEEEecCccHHHHHHHHH
Q 035870 773 MSVASRLCVEQVENIGIHYYQTLRCWR 799 (842)
Q Consensus 773 ~~~~~gf~v~~~~~~~~~y~~tl~~w~ 799 (842)
......+.+.++++.+|.+++..|.
T Consensus 199 --~~f~~p~~d~~~~~~~~~~~~~~~~ 223 (348)
T 2y1w_A 199 --EYFRQPVVDTFDIRILMAKSVKYTV 223 (348)
T ss_dssp --HHHTSCEEECCCGGGBCBCCEEEEE
T ss_pred --hhccCCeEEeECCeeecCcceEEEE
Confidence 1123357778888888988877775
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=178.11 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=129.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-
Q 035870 604 KSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIR- 682 (842)
Q Consensus 604 ~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~- 682 (842)
......+.+.+.+..+.+++.+.++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~ 156 (416)
T 4e2x_A 82 SSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDF 156 (416)
T ss_dssp GGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceee
Confidence 33445677777888899999999899999999999999999999987 88999999999999999876 3321111
Q ss_pred EEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCC
Q 035870 683 LYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGG 761 (842)
Q Consensus 683 ~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 761 (842)
+...+..+++ ++++||+|+++.+++|+++ +..++++++++|||||++++......... ....|. ....++.
T Consensus 157 ~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~~~~~~-~~~~~~~ 228 (416)
T 4e2x_A 157 FEKATADDVRRTEGPANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDIV-----AKTSFD-QIFDEHF 228 (416)
T ss_dssp CSHHHHHHHHHHHCCEEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHHH-----HHTCGG-GCSTTCC
T ss_pred echhhHhhcccCCCCEEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHhh-----hhcchh-hhhhhhh
Confidence 2233444454 4689999999999999986 89999999999999999999765432110 001111 1112344
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 762 CLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 762 ~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
.+++..++.+.+.+ +||++.+++.+.
T Consensus 229 ~~~s~~~l~~ll~~-aGf~~~~~~~~~ 254 (416)
T 4e2x_A 229 FLFSATSVQGMAQR-CGFELVDVQRLP 254 (416)
T ss_dssp EECCHHHHHHHHHH-TTEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHH-cCCEEEEEEEcc
Confidence 56788999888877 899999988864
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=166.16 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=135.4
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
....+++.+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++|+++.+|+.+..+.
T Consensus 190 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~- 267 (369)
T 3gwz_A 190 EAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD- 267 (369)
T ss_dssp HHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-
T ss_pred hHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-
Confidence 3466778888888899999999999999999988 6789999999 999999999999999888999999999832243
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhh
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
+||+|++..++++++++....++++++++|||||++++.+...++..... ....++ .....+++...+.+++.+.+++
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~-~~~~~~~g~~~t~~e~~~ll~~ 345 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDL-LLLVLVGGAERSESEFAALLEK 345 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHH-HHHHHHSCCCBCHHHHHHHHHT
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhH-HHHhhcCCccCCHHHHHHHHHH
Confidence 89999999999999987777999999999999999999988776643221 100111 1123356778899999888887
Q ss_pred cCCcEEEEEEe
Q 035870 776 ASRLCVEQVEN 786 (842)
Q Consensus 776 ~~gf~v~~~~~ 786 (842)
+||+++++..
T Consensus 346 -aGf~~~~~~~ 355 (369)
T 3gwz_A 346 -SGLRVERSLP 355 (369)
T ss_dssp -TTEEEEEEEE
T ss_pred -CCCeEEEEEE
Confidence 8999998876
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-17 Score=166.78 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=120.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
...+.+++.+...++.+|||||||+|.++..+++. +++|+|+|+|+.+++.++++. +++++++|+.+++ ++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence 34567778888889999999999999999999984 899999999999999887653 7999999999988 67
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CCCCCCCHHHHHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PGGCLPSLSRITSAM 773 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~~~~~~~~~~~~~~ 773 (842)
++||+|++..+++|+.+ +..++++++++|| ||++++.++..+... ..+. ..++..... .+..+++..++. .+
T Consensus 93 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~-~l 165 (261)
T 3ege_A 93 KSVDGVISILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQ-RIWL--YDYFPFLWEDALRFLPLDEQIN-LL 165 (261)
T ss_dssp TCBSEEEEESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCC-CCGG--GGTCHHHHHHHHTSCCHHHHHH-HH
T ss_pred CCEeEEEEcchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhH-HHHH--HHHHHHHhhhhhhhCCCHHHHH-HH
Confidence 89999999999999966 8999999999999 999988877543211 0000 011110000 113456777777 66
Q ss_pred hhcCCcEEEEEEec
Q 035870 774 SVASRLCVEQVENI 787 (842)
Q Consensus 774 ~~~~gf~v~~~~~~ 787 (842)
.+ +||+++..+.+
T Consensus 166 ~~-aGF~~v~~~~~ 178 (261)
T 3ege_A 166 QE-NTKRRVEAIPF 178 (261)
T ss_dssp HH-HHCSEEEEEEC
T ss_pred HH-cCCCceeEEEe
Confidence 65 89988887775
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-17 Score=162.76 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=117.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC---c--c
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL---A--K 693 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~--~ 693 (842)
..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ .++.+.+.|+.++ + .
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccccc
Confidence 45566666667799999999999999999998 88999999999999999987 2678899998776 3 4
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhh-c-------ccCCCCCCC
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKE-Y-------IFPGGCLPS 765 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------i~p~~~~~~ 765 (842)
.++||+|+++.+++ .. ++..++++++++|||||++++.+..........+. ..|... + ........+
T Consensus 114 ~~~fD~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 114 GKDYDLICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ--DGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp CCCEEEEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS--CEEEEECCTTSSSCCCCEEEEECC
T ss_pred CCCccEEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccc--cccchhhhhccccCcccceEEEec
Confidence 45699999999999 43 37899999999999999999988765432211111 111110 0 001113468
Q ss_pred HHHHHHHHhhcCCcEEEEEEec
Q 035870 766 LSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
.+++.+.+.+ +||++++++..
T Consensus 189 ~~~~~~~l~~-aGf~~~~~~~~ 209 (227)
T 3e8s_A 189 LASWLNALDM-AGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHH-TTEEEEEEECC
T ss_pred HHHHHHHHHH-cCCeEEEEecC
Confidence 9999988887 89999988763
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-16 Score=166.23 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=131.3
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++.+.++.++|+++.+|+.+..+ .+|
T Consensus 159 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p-~~~ 236 (332)
T 3i53_A 159 TGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP-AGA 236 (332)
T ss_dssp TTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-CSC
T ss_pred HHHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC-CCC
Confidence 34555556667789999999999999999987 6789999999 99999999999999988899999999973223 389
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVAS 777 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 777 (842)
|+|++..++||++++....++++++++|||||++++.+...++. ... ...++.. ....++...+.+++.+.+.+ +
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~-~~~d~~~-~~~~~~~~~t~~e~~~ll~~-a 311 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HAG-TGMDLRM-LTYFGGKERSLAELGELAAQ-A 311 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----CC-HHHHHHH-HHHHSCCCCCHHHHHHHHHH-T
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Ccc-HHHHHHH-HhhCCCCCCCHHHHHHHHHH-C
Confidence 99999999999999888999999999999999999988876654 110 0111111 12356777899999888887 8
Q ss_pred CcEEEEEEecCc
Q 035870 778 RLCVEQVENIGI 789 (842)
Q Consensus 778 gf~v~~~~~~~~ 789 (842)
||+++++...+.
T Consensus 312 Gf~~~~~~~~~~ 323 (332)
T 3i53_A 312 GLAVRAAHPISY 323 (332)
T ss_dssp TEEEEEEEECSS
T ss_pred CCEEEEEEECCC
Confidence 999998877653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=165.28 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=122.1
Q ss_pred HHHHHHHc-CCCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 618 VSLLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 618 ~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
+..+++.+ .+.++.+|||||||+|.++..+++. + +++|+|+|+|+.+++.|++++...+. +++++++|+.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 87 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN 87 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcC
Confidence 34455544 5678899999999999999999987 3 58999999999999999999887664 799999999998855
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC----cccc-----cccCccchhhh----cccCCC
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD----ERYN-----EYRLSSDFIKE----YIFPGG 761 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~----~~~~-----~~~~~~~~~~~----~i~p~~ 761 (842)
++||+|++..+++|+++ +..++++++++|||||++++.+..... .... .......|... ....+.
T Consensus 88 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
T 3gu3_A 88 DKYDIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK 165 (284)
T ss_dssp SCEEEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCC
T ss_pred CCeeEEEECChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcc
Confidence 79999999999999977 789999999999999999998765110 0000 00000111110 111234
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 762 CLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 762 ~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
..++..++.+.+++ +||+.+....
T Consensus 166 ~~~~~~~l~~~l~~-aGF~~v~~~~ 189 (284)
T 3gu3_A 166 DGNIGMKIPIYLSE-LGVKNIECRV 189 (284)
T ss_dssp CTTGGGTHHHHHHH-TTCEEEEEEE
T ss_pred cccHHHHHHHHHHH-cCCCeEEEEE
Confidence 45566677777776 8998876643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=166.09 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=112.6
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGL--------------------------- 677 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l--------------------------- 677 (842)
...++.+|||||||+|.++..++.. ++ +|+|+|+|+.|++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 4568899999999999888777766 54 799999999999999988754320
Q ss_pred -CCCeE-EEEccccCC-c----cCCCccEEEEcchhhhcC--hhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC
Q 035870 678 -QDLIR-LYLCDYRQL-A----KANKYDRIISCEMIEAVG--HEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748 (842)
Q Consensus 678 -~~~v~-~~~~d~~~~-~----~~~~fD~i~s~~~~~~~~--~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~ 748 (842)
..++. ++++|+.+. + ..++||+|+++.++||+. .+++..++++++++|||||++++..+.... .+.
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~-~~~---- 205 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-SYM---- 205 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEE----
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc-cce----
Confidence 01244 899998874 2 246899999999999973 245789999999999999999998754322 111
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 749 SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
.....++ ....+.+++.+.+.+ +||+++.++....
T Consensus 206 ----~g~~~~~-~~~~~~~~l~~~l~~-aGF~i~~~~~~~~ 240 (263)
T 2a14_A 206 ----VGKREFS-CVALEKGEVEQAVLD-AGFDIEQLLHSPQ 240 (263)
T ss_dssp ----ETTEEEE-CCCCCHHHHHHHHHH-TTEEEEEEEEECC
T ss_pred ----eCCeEee-ccccCHHHHHHHHHH-CCCEEEEEeeccc
Confidence 0011122 123478889888887 8999999887653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=158.57 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=121.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC----CCeEEEEccccCCc-cCCCccEEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ----DLIRLYLCDYRQLA-KANKYDRII 701 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~----~~v~~~~~d~~~~~-~~~~fD~i~ 701 (842)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++. ++++++++|+.+++ ++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 357889999999999999999998 889999999999999999998877762 36899999999988 678999999
Q ss_pred EcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEeecCCCccccccc----------CccchhhhcccC-----CCCCCC
Q 035870 702 SCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR----------LSSDFIKEYIFP-----GGCLPS 765 (842)
Q Consensus 702 s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~p-----~~~~~~ 765 (842)
++.+++|+++ +....+++++.++|||||++++.++........... ....+....... .....+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 9999999975 334589999999999999999988765322100000 000000000000 013568
Q ss_pred HHHHHHHHhhcCCcEEEEEEec
Q 035870 766 LSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
.+++.+.+++ +||+++.++..
T Consensus 187 ~~~l~~ll~~-aGf~~~~~~~~ 207 (235)
T 3sm3_A 187 EKELVFLLTD-CRFEIDYFRVK 207 (235)
T ss_dssp HHHHHHHHHT-TTEEEEEEEEE
T ss_pred HHHHHHHHHH-cCCEEEEEEec
Confidence 9999888887 89999888764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-16 Score=158.46 Aligned_cols=107 Identities=25% Similarity=0.366 Sum_probs=95.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc-hh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE-MI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~-~~ 706 (842)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++ +++++++|+.+++..++||+|+++. ++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDST 112 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCceEEEEcCccc
Confidence 37789999999999999999987 88999999999999999999988765 7999999999887448999999998 99
Q ss_pred hhcCh-hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 707 EAVGH-EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 707 ~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+|+.+ +++..++++++++|||||++++....
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99943 56899999999999999999986543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=162.76 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=93.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc-hh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE-MI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~-~~ 706 (842)
+++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. +++++++|+.+++.+++||+|++.. ++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~~l 121 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAVTCMFSSI 121 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEEEECTTGG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEEEEcCchh
Confidence 46789999999999999999988 7899999999999999998842 7899999999987668999999998 99
Q ss_pred hhcCh-hhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 707 EAVGH-EFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 707 ~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+|+++ +....++++++++|||||++++.....+.
T Consensus 122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 122 GHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 99964 46789999999999999999997654443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-16 Score=167.70 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=134.4
Q ss_pred HHHHHHHcCCCC-CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--c
Q 035870 618 VSLLIEKARVSK-GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--K 693 (842)
Q Consensus 618 ~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~ 693 (842)
+..+++.++..+ +.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+.+ .
T Consensus 167 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 167 MVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 346777777777 899999999999999999988 6789999999 8899999999999888888999999998876 5
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc-cCccchhhhcccCCCCCCCHHHHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY-RLSSDFIKEYIFPGGCLPSLSRITSA 772 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~p~~~~~~~~~~~~~ 772 (842)
.+.||+|++..++||++++....++++++++|||||++++.+...++...... ....++......+++...+.+++.+.
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 57799999999999999888899999999999999999999887665432111 00111111122467788899999888
Q ss_pred HhhcCCcEEEEE
Q 035870 773 MSVASRLCVEQV 784 (842)
Q Consensus 773 ~~~~~gf~v~~~ 784 (842)
+++ +||+++..
T Consensus 326 l~~-aGf~~~~~ 336 (352)
T 3mcz_A 326 VRD-AGLAVGER 336 (352)
T ss_dssp HHH-TTCEEEEE
T ss_pred HHH-CCCceeee
Confidence 887 89998874
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-17 Score=182.01 Aligned_cols=185 Identities=22% Similarity=0.183 Sum_probs=141.9
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
.+.+++.+...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++.++|+++++|+.+++..++|
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f 225 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 225 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence 355666676678899999999999999999987557999999999 9999999999999988999999999987644689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC-----C-cccccccCccchhhhcccCCCCCCCHHHHHH
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP-----D-ERYNEYRLSSDFIKEYIFPGGCLPSLSRITS 771 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~ 771 (842)
|+|+|+.+++|+..+.....+.+++++|||||++++...... . ..+.......+|+.+.++||..++++.++..
T Consensus 226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~~ 305 (480)
T 3b3j_A 226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAV 305 (480)
T ss_dssp EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHHHHH
T ss_pred EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCCCcChhhhhhHHH
Confidence 999999999999877778888899999999999986432210 0 0110000123455556899999999887743
Q ss_pred HHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHh
Q 035870 772 AMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEK 805 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~ 805 (842)
. ...+..+.+.++++.+|.+++..|.+.....
T Consensus 306 ~--~~f~~pvvd~~~~~~~y~~tl~~~~d~~~~~ 337 (480)
T 3b3j_A 306 D--EYFRQPVVDTFDIRILMAKSVKYTVNFLEAK 337 (480)
T ss_dssp H--HHTTSCEECCCCSTTBCSCCEEEEEETTTCC
T ss_pred H--hccCCcEEEEeecccccchhhhhhhhhhcCC
Confidence 2 2133467888889999998887665554433
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=155.34 Aligned_cols=174 Identities=14% Similarity=0.215 Sum_probs=130.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC--c-cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL--A-KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~-~~~~ 696 (842)
.+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. .+++++|+.+. + ++++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCc
Confidence 4555555 67889999999999999999998 799999999999999998653 37899998773 3 4579
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhh---hccc-CCCCCCCHHHHHHH
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIK---EYIF-PGGCLPSLSRITSA 772 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~-p~~~~~~~~~~~~~ 772 (842)
||+|++..+++|+++ +..+++++.++|||||.+++..................|.. .... .+....+..++.+.
T Consensus 94 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp EEEEEEESCGGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred cCEEEECChhhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 999999999999976 78999999999999999999876543211000000000100 0001 12245688999888
Q ss_pred HhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhHH
Q 035870 773 MSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQS 807 (842)
Q Consensus 773 ~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~ 807 (842)
+.+ +||+++.++.+..++ .+...|.+++.....
T Consensus 172 l~~-~Gf~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 204 (230)
T 3cc8_A 172 FLK-AGYSISKVDRVYVDH-KMYEPLIEELYGICK 204 (230)
T ss_dssp HHH-TTEEEEEEEEEECCC-GGGHHHHHHHHHHHH
T ss_pred HHH-cCCeEEEEEecccCh-hhccchHHHHHHHHH
Confidence 887 899999999988777 777888888776554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=152.93 Aligned_cols=118 Identities=20% Similarity=0.356 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
....+.+.+.+ +++.+|||||||+|.++..+++. +.+|+++|+|+++++.|+++....+ .+++++++|+.+++ +
T Consensus 26 ~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~ 100 (227)
T 1ve3_A 26 ETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFE 100 (227)
T ss_dssp HHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSC
T ss_pred HHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCC
Confidence 33344444443 45889999999999999999988 5699999999999999999998876 47999999999887 5
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+++||+|+++.++++....+...++++++++|||||++++....
T Consensus 101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 67999999999966666566899999999999999999998765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=166.78 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=130.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+.++++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+..+ ..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC-CCC
Confidence 45677777888999999999999999999988 5789999999 99999999999999988899999999876222 359
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee--cCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhh
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI--SIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~ 775 (842)
|+|++..+++|++++....++++++++|||||++++.+. ..++..........++ .....+++...+.+++.+.+.+
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~ 328 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDL-RMLTFMGGRVRTRDEVVDLAGS 328 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHH-HHHHHHSCCCCCHHHHHHHHHT
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcch-HHHHhCCCcCCCHHHHHHHHHH
Confidence 999999999999987677999999999999999999887 5443211111110111 1112356777899999988887
Q ss_pred cCCcEEEEEEecCc
Q 035870 776 ASRLCVEQVENIGI 789 (842)
Q Consensus 776 ~~gf~v~~~~~~~~ 789 (842)
+||+++.+...+.
T Consensus 329 -aGf~~~~~~~~~~ 341 (374)
T 1qzz_A 329 -AGLALASERTSGS 341 (374)
T ss_dssp -TTEEEEEEEEECC
T ss_pred -CCCceEEEEECCC
Confidence 8999988877654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=158.17 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=115.8
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEE
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIIS 702 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s 702 (842)
+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++++|+.+++.+++||+|++
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~ 190 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVS 190 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEE
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEE
Confidence 3333347889999999999999999998 88999999999999999999999887 79999999998876789999999
Q ss_pred cchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEE
Q 035870 703 CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~ 782 (842)
+.+++|++++....+++++.++|||||++++........... . .+.....+..++.+.+. +|++.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~--------~~~~~~~~~~~l~~~~~---~~~~~ 255 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC----P--------LPFSFTFAENELKEYYK---DWEFL 255 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC----S--------SCCSCCBCTTHHHHHTT---TSEEE
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC----C--------CCccccCCHHHHHHHhc---CCEEE
Confidence 999999988888999999999999999988765443321100 0 01122345666665543 48887
Q ss_pred EEEe
Q 035870 783 QVEN 786 (842)
Q Consensus 783 ~~~~ 786 (842)
..+.
T Consensus 256 ~~~~ 259 (286)
T 3m70_A 256 EYNE 259 (286)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-16 Score=149.25 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=115.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
+.+++.+.+.++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.++++ .+++++.++| ... ++++||
T Consensus 7 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~~~-~~~~~D 77 (170)
T 3i9f_A 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP-KEI-PDNSVD 77 (170)
T ss_dssp TTTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG-GGS-CTTCEE
T ss_pred HHHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-CCC-CCCceE
Confidence 345666677889999999999999999999984 4999999999999999988 2379999999 222 457999
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
+|+++.+++|+++ +..+++++.++|||||++++.++......... |.....+.+++.+.+. |
T Consensus 78 ~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~---G 139 (170)
T 3i9f_A 78 FILFANSFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-------------PLSIRMDEKDYMGWFS---N 139 (170)
T ss_dssp EEEEESCSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-------------CGGGCCCHHHHHHHTT---T
T ss_pred EEEEccchhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-------------hHhhhcCHHHHHHHHh---C
Confidence 9999999999975 89999999999999999999887654432111 1112247788877665 9
Q ss_pred cEEEEEEecCc
Q 035870 779 LCVEQVENIGI 789 (842)
Q Consensus 779 f~v~~~~~~~~ 789 (842)
|++.....++.
T Consensus 140 f~~~~~~~~~~ 150 (170)
T 3i9f_A 140 FVVEKRFNPTP 150 (170)
T ss_dssp EEEEEEECSST
T ss_pred cEEEEccCCCC
Confidence 99999888764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=160.38 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=97.8
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccccCCc-cC-----
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLCDYRQLA-KA----- 694 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~-~~----- 694 (842)
.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++.. +...+++++++|+.+++ ++
T Consensus 31 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 31 EYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp HHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred HHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence 333468899999999999999999973 5889999999999999999999887 45568999999999987 44
Q ss_pred -CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 695 -NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 695 -~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++||+|+++.+++|+ + +..+++++.++|||||.+++..+.
T Consensus 111 ~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp SSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecC
Confidence 799999999999999 4 899999999999999999995554
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-17 Score=164.30 Aligned_cols=179 Identities=10% Similarity=0.121 Sum_probs=122.8
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHH----HHHHcCCCCCeEEEEccccCCc-cC
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEM----KVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~----~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
.++.+.++++.+|||||||+|.++..+++. ++++|+|+|+|++|++.+.+ +....+++ +++++++|+.+++ ++
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~ 97 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLS 97 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCC
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCC
Confidence 445556788999999999999999999998 47899999999998886433 33345554 8999999999988 44
Q ss_pred CCccEEEEcc---hh--hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCC-HHH
Q 035870 695 NKYDRIISCE---MI--EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPS-LSR 768 (842)
Q Consensus 695 ~~fD~i~s~~---~~--~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~-~~~ 768 (842)
+. |.|+... .. +|+++ ...++++++++|||||++++....... ... ..... -.|...... .++
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~----~~~~~--~~~~~~~~~~~~~ 166 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAW--RPS----VPEVG--EHPEPTPDSADEW 166 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGB--TTB----CGGGT--TCCCCCHHHHHHH
T ss_pred CC-CEEEEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccc--ccc----ccccc--cCCccchHHHHHH
Confidence 44 6666433 33 25554 589999999999999999995432111 000 00011 111111111 223
Q ss_pred HHHHHhhcCCcEEEEEEecCccHHHHH-HHHHHHHHHhHHHHHhc
Q 035870 769 ITSAMSVASRLCVEQVENIGIHYYQTL-RCWRKNFMEKQSKILAL 812 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~~~~~y~~tl-~~w~~~~~~~~~~~~~~ 812 (842)
+...+.+ +||++.+++.+..++..++ ..|.+++...+++...+
T Consensus 167 l~~~l~~-aGf~i~~~~~~~~~~~~~~~~~w~~~~~~~r~~~~~~ 210 (218)
T 3mq2_A 167 LAPRYAE-AGWKLADCRYLEPEEVAGLETSWTRRLHSSRDRFDVL 210 (218)
T ss_dssp HHHHHHH-TTEEEEEEEEECHHHHHHTCCTHHHHHTTCCSSCSEE
T ss_pred HHHHHHH-cCCCceeeeccchhhhhhhHHHHHHHHcccccceeeE
Confidence 5555665 8999999999988887555 78999987766555443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=156.52 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=121.2
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
.+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++... .+++++++|+.+++ ++++|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCc
Confidence 4556677778899999999999999999988 66 999999999999999987643 27999999999887 56899
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC----c--cc-ccccCccchhhhccc-----------C
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD----E--RY-NEYRLSSDFIKEYIF-----------P 759 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~----~--~~-~~~~~~~~~~~~~i~-----------p 759 (842)
|+|++..+++|+++ +..++++++++|||||++++....... . +. ........-+..|.. +
T Consensus 109 D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 109 DLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred eEEEEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 99999999999975 899999999999999999997643110 0 00 000000000001100 0
Q ss_pred -CCCCCCHHHHHHHHhhcCCcEEEEEEecCcc
Q 035870 760 -GGCLPSLSRITSAMSVASRLCVEQVENIGIH 790 (842)
Q Consensus 760 -~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~ 790 (842)
.....+.+++.+.+.+ +||+++.++.....
T Consensus 187 ~~~~~~t~~~~~~~l~~-aGF~~~~~~~~~~~ 217 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIR-SGFAIEHVEEFCPT 217 (243)
T ss_dssp CCEEECCHHHHHHHHHH-TTCEEEEEEECCCC
T ss_pred eEEEeccHHHHHHHHHH-cCCEeeeeccCCCc
Confidence 0122478899888887 89999999876543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-16 Score=165.83 Aligned_cols=162 Identities=18% Similarity=0.106 Sum_probs=114.1
Q ss_pred HHHHHHHHHcCC--CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-----------------C
Q 035870 616 RKVSLLIEKARV--SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA-----------------G 676 (842)
Q Consensus 616 ~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-----------------~ 676 (842)
..+..+.+.+.. .++.+|||||||+|..+..++...+.+|+|+|+|++|++.|+++++.. +
T Consensus 56 ~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 56 WKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 334445554432 378899999999999665555545789999999999999999876421 1
Q ss_pred CCC------------CeEEEEccccC-Cc------cCCCccEEEEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEe
Q 035870 677 LQD------------LIRLYLCDYRQ-LA------KANKYDRIISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 677 l~~------------~v~~~~~d~~~-~~------~~~~fD~i~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
... .++++.+|+.+ ++ ++++||+|+|+.+++|+..+ ++..++++++++|||||++++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 000 15678889887 43 23569999999999996543 58999999999999999999975
Q ss_pred ecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 736 ISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
..... .+.. . ...++ ....+.+++.+.+.+ +||+++.++.+.
T Consensus 216 ~~~~~-~~~~--~------~~~~~-~~~~~~~~l~~~l~~-aGf~~~~~~~~~ 257 (289)
T 2g72_A 216 ALEES-WYLA--G------EARLT-VVPVSEEEVREALVR-SGYKVRDLRTYI 257 (289)
T ss_dssp EESCC-EEEE--T------TEEEE-CCCCCHHHHHHHHHH-TTEEEEEEEEEE
T ss_pred ecCcc-eEEc--C------Ceeee-eccCCHHHHHHHHHH-cCCeEEEeeEee
Confidence 33211 1110 0 00011 234578899888887 899999888765
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-16 Score=163.65 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=109.8
Q ss_pred hhhhhcCChHHHHhccCCCCcccc--c-ccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC
Q 035870 577 ISRHYDLSNELFSLFLDESMTYSC--A-VFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC 653 (842)
Q Consensus 577 i~~~Yd~~~~~~~~~l~~~~~ys~--~-~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~ 653 (842)
.+.+|+..+++...|.+..+.|+. . +.......+.......++.+...+ .+++.+|||||||+|.++..+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~ 84 (236)
T 1zx0_A 6 ATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPID 84 (236)
T ss_dssp --CCSCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEE
T ss_pred CCCccCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCC
Confidence 344666666777766666666641 1 111111111111222333343333 568889999999999999999876445
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC--c-cCCCccEEEE-cchh--hhcChhhHHHHHHHHHhcccc
Q 035870 654 KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL--A-KANKYDRIIS-CEMI--EAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~-~~~~fD~i~s-~~~~--~~~~~~~~~~~~~~~~~~Lkp 727 (842)
+|+|+|+|+.|++.|+++.+..+ .+++++++|+.++ + ++++||+|++ ...+ +......+..++++++++|||
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkp 162 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999987766 4799999999887 5 5689999999 4442 222333466889999999999
Q ss_pred CcEEEEEeec
Q 035870 728 DGLLVLQFIS 737 (842)
Q Consensus 728 gG~~~~~~~~ 737 (842)
||++++.+..
T Consensus 163 gG~l~~~~~~ 172 (236)
T 1zx0_A 163 GGVLTYCNLT 172 (236)
T ss_dssp EEEEEECCHH
T ss_pred CeEEEEEecC
Confidence 9999986544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=152.92 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=115.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
..++.+|||+|||+|.++..++...+.+|+|+|+|+++++.|++++...+ .+++++++|+.+++ ++++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcCh
Confidence 45788999999999998544444458899999999999999999988766 37899999999987 5689999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCc--cchhh-hcccC-CCCCCCHHHHHHHHhhcCCcEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLS--SDFIK-EYIFP-GGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~--~~~~~-~~i~p-~~~~~~~~~~~~~~~~~~gf~v 781 (842)
++|++.+++..++++++++|||||++++.+++.++..+...... ..+.. ....| ...+.+.+++.+.+.+ .||..
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~g~~~ 177 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKD-MKVLF 177 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTT-SEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhh-cCcee
Confidence 99998777999999999999999999999887665433211000 00000 00001 1134477778776665 78865
Q ss_pred EEE
Q 035870 782 EQV 784 (842)
Q Consensus 782 ~~~ 784 (842)
...
T Consensus 178 ~~~ 180 (209)
T 2p8j_A 178 KED 180 (209)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=163.90 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=123.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEccccCCc-------cC
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG------LQDLIRLYLCDYRQLA-------KA 694 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~------l~~~v~~~~~d~~~~~-------~~ 694 (842)
+++.+|||||||+|.++..+++..+.+|+|+|+|+++++.|+++....+ ...+++++++|+.+++ ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4788999999999999999998767899999999999999999987642 2237999999998764 24
Q ss_pred CCccEEEEcchhhhc--ChhhHHHHHHHHHhccccCcEEEEEeecCCCc----------c---------cccccCccchh
Q 035870 695 NKYDRIISCEMIEAV--GHEFMEEFFGCCESLLAEDGLLVLQFISIPDE----------R---------YNEYRLSSDFI 753 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~--~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~----------~---------~~~~~~~~~~~ 753 (842)
++||+|+|+.+++|+ +.++...++++++++|||||.+++..+..... . +........+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 589999999999998 33557899999999999999999987643110 0 00000011122
Q ss_pred hhccc---CC----CCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHH
Q 035870 754 KEYIF---PG----GCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWR 799 (842)
Q Consensus 754 ~~~i~---p~----~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~ 799 (842)
.+|-| +. ....+..++.+.+.+ .||+++...++...+......|+
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~-~G~~~v~~~~f~~~g~~~~~~~r 244 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKK-YNMKLVYKKTFLEFYEEKIKNNE 244 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGG-GTEEEEEEEEHHHHHHHHTTSHH
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHH-cCcEEEEecCHHHHHHHhccchh
Confidence 22222 11 123467777777666 89999999988877766654443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=150.51 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=118.2
Q ss_pred HHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHH
Q 035870 588 FSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKY 667 (842)
Q Consensus 588 ~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~ 667 (842)
...++++.+.|+++.. .......+.+... ++++.+|||||||+|.++..+++.+..+|+++|+|+.+++.
T Consensus 29 ~~~~~~~~~~f~~~~~--------~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~ 98 (205)
T 3grz_A 29 EIIRLDPGLAFGTGNH--------QTTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA 98 (205)
T ss_dssp EEEEESCC-----CCH--------HHHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred eeEEecCCcccCCCCC--------ccHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 3456777777765532 1111222222222 46889999999999999999998745599999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccccc
Q 035870 668 AEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR 747 (842)
Q Consensus 668 a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 747 (842)
|++++...++.+ ++++++|+.+.. +++||+|+++.++++ +..+++++.++|||||++++..+...
T Consensus 99 a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~-------- 163 (205)
T 3grz_A 99 AEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDYL-------- 163 (205)
T ss_dssp HHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEGG--------
T ss_pred HHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCcc--------
Confidence 999999998874 999999997765 479999999988876 47889999999999999999654322
Q ss_pred CccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCcc
Q 035870 748 LSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIH 790 (842)
Q Consensus 748 ~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~ 790 (842)
+..++.+.+.+ +||++......+.+
T Consensus 164 -----------------~~~~~~~~~~~-~Gf~~~~~~~~~~w 188 (205)
T 3grz_A 164 -----------------QLPKIEQALAE-NSFQIDLKMRAGRW 188 (205)
T ss_dssp -----------------GHHHHHHHHHH-TTEEEEEEEEETTE
T ss_pred -----------------cHHHHHHHHHH-cCCceEEeeccCCE
Confidence 24455666665 89999887765443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=166.06 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=124.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC--ccCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL--AKANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~~~fD~i~s~~ 704 (842)
.+..+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++.+.++.++|+++.+|+.+. +..++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 45679999999999999999987 6889999999 999999999999888877999999999875 3227899999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhh----hcccCCCCCCCHHHHHHHHhhcCCcE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIK----EYIFPGGCLPSLSRITSAMSVASRLC 780 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~p~~~~~~~~~~~~~~~~~~gf~ 780 (842)
++|+++++....++++++++|||||++++.+...+............... .....++...+..++.+.+++ +||+
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~-AGf~ 335 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIEN-AGLE 335 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHT-TTEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHH-cCCe
Confidence 99999988888999999999999999999887766543221100000011 111234566799999888887 8999
Q ss_pred EEEEEe
Q 035870 781 VEQVEN 786 (842)
Q Consensus 781 v~~~~~ 786 (842)
++.+..
T Consensus 336 ~v~~~~ 341 (363)
T 3dp7_A 336 VEEIQD 341 (363)
T ss_dssp ESCCCC
T ss_pred EEEEEe
Confidence 877653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=160.31 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=131.8
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
.+.+++.+...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|+++++..+++++++++.+|+.+.+. ..
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 256 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PE 256 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-CC
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-CC
Confidence 456777888888999999999999999999988 5789999999 99999999999999888789999999988763 23
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc-cCCCCC----CCHHHHHH
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI-FPGGCL----PSLSRITS 771 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~p~~~~----~~~~~~~~ 771 (842)
+|+|++..+++|++++....++++++++|||||++++.+...++...... ..+..... ..++.. .+.+++.+
T Consensus 257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~t~~e~~~ 333 (359)
T 1x19_A 257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF---DYLSHYILGAGMPFSVLGFKEQARYKE 333 (359)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCH---HHHHHHGGGGGSSCCCCCCCCGGGHHH
T ss_pred CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchH---HHHHHHHHhcCCCCcccCCCCHHHHHH
Confidence 49999999999999888999999999999999999998877654311111 01111111 222333 78899988
Q ss_pred HHhhcCCcEEEEEEecC
Q 035870 772 AMSVASRLCVEQVENIG 788 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~~ 788 (842)
.+.+ +||+++.+..++
T Consensus 334 ll~~-aGf~~v~~~~~~ 349 (359)
T 1x19_A 334 ILES-LGYKDVTMVRKY 349 (359)
T ss_dssp HHHH-HTCEEEEEEEET
T ss_pred HHHH-CCCceEEEEecC
Confidence 8887 899998887654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=153.85 Aligned_cols=115 Identities=22% Similarity=0.219 Sum_probs=100.5
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
..+...+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ +++++++|+.+++++++||
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD 116 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTAELFD 116 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCCSCCEE
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCCCCCcc
Confidence 34444566778899999999999999999988 6799999999999999999986543 7999999999988778999
Q ss_pred EEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 699 RIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 699 ~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+|+++.+++|+++ +....+++++.++|||||.+++.+..
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999999999986 45678899999999999999997653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=163.23 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=132.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+.++++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+..+ ..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC-CCc
Confidence 45677778888999999999999999999988 5789999999 99999999999999988899999999876223 359
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec-CCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS-IPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
|+|++..+++|++++....++++++++|||||++++.+.. .++..........++. ....+++...+.+++.+.+.+
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~- 328 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLR-MLVFLGGALRTREKWDGLAAS- 328 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHH-HHHHHSCCCCBHHHHHHHHHH-
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHH-HhhhcCCcCCCHHHHHHHHHH-
Confidence 9999999999999877789999999999999999998876 4433111111000111 112345677899999988887
Q ss_pred CCcEEEEEEecC
Q 035870 777 SRLCVEQVENIG 788 (842)
Q Consensus 777 ~gf~v~~~~~~~ 788 (842)
+||+++.+...+
T Consensus 329 aGf~~~~~~~~~ 340 (360)
T 1tw3_A 329 AGLVVEEVRQLP 340 (360)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCCeEEEEEeCC
Confidence 899998887764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-15 Score=147.04 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=97.8
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-ccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-AKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~f 697 (842)
..+++.+.+.++.+|||||||+|.++..+++. +++|+++|+|+++++.|+++++..+++++++++++|+.+. +..++|
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 45677888899999999999999999999998 8999999999999999999999999987899999999884 344689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+|++...+ ..+ +++++.++|||||++++..+.
T Consensus 124 D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 124 EAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 999987743 245 999999999999999997653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=149.38 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=114.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
+++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++++++|+.+++ ++++||+|+++ +
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~--~ 102 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSI--F 102 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEE--C
T ss_pred CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEE--h
Confidence 466 9999999999999999987 88999999999999999999988775 7999999998887 56899999995 3
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
.|.+.+....+++++.++|||||++++.........+.... . .......+.+++.+.+. ||+++.++.
T Consensus 103 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~l~~~l~---Gf~v~~~~~ 170 (202)
T 2kw5_A 103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGG---P------KDLDLLPKLETLQSELP---SLNWLIANN 170 (202)
T ss_dssp CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCC---S------SSGGGCCCHHHHHHHCS---SSCEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCC---C------CcceeecCHHHHHHHhc---CceEEEEEE
Confidence 56666678999999999999999999988765543221000 0 01123568888887765 999988776
Q ss_pred cC
Q 035870 787 IG 788 (842)
Q Consensus 787 ~~ 788 (842)
..
T Consensus 171 ~~ 172 (202)
T 2kw5_A 171 LE 172 (202)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=145.63 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=91.2
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISC 703 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~ 703 (842)
.++++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++++..++ +++++++.|..+++ .+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4678999999999999999999998 89999999999999999999999988 58999998887754 35789999987
Q ss_pred c-hhhhc------ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 704 E-MIEAV------GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 704 ~-~~~~~------~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
. .+.+. ..+....+++++.++|||||++++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3 33220 1234678899999999999999997654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=161.63 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=130.9
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
...+++.++.++ .+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.++++++.+|+.+ +..++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN 233 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence 456677777777 89999999999999999988 6789999999 99999999998887777789999999877 32368
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
||+|++..+++|++++....++++++++|||||++++.+...++..........++.. ....++...+.+++.+.+++
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~e~~~ll~~- 311 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHL-FMACAGRHRTTEEVVDLLGR- 311 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHH-HHHHSCCCCBHHHHHHHHHH-
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHh-HhhCCCcCCCHHHHHHHHHH-
Confidence 9999999999999987778999999999999999999987765432111110011111 11234566789999888887
Q ss_pred CCcEEEEEEecC
Q 035870 777 SRLCVEQVENIG 788 (842)
Q Consensus 777 ~gf~v~~~~~~~ 788 (842)
+||+++++...+
T Consensus 312 aGf~~~~~~~~~ 323 (334)
T 2ip2_A 312 GGFAVERIVDLP 323 (334)
T ss_dssp TTEEEEEEEEET
T ss_pred CCCceeEEEECC
Confidence 899998887654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=148.26 Aligned_cols=112 Identities=25% Similarity=0.437 Sum_probs=96.5
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
+.+.+.+ +++.+|||||||+|.++..+++. .+|+|+|+|+++++.|+++....+ .+++++++|+.+++..++||
T Consensus 25 ~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD 98 (243)
T 3d2l_A 25 AWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPEPVD 98 (243)
T ss_dssp HHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSSCEE
T ss_pred HHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCCCcC
Confidence 3455554 46789999999999999999887 799999999999999999998776 37999999999887448999
Q ss_pred EEEEcc-hhhhc-ChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 699 RIISCE-MIEAV-GHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 699 ~i~s~~-~~~~~-~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+|++.. +++|+ ..+....+++++.++|||||++++...
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 99 AITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 999986 99999 445688999999999999999998654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-16 Score=158.07 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=92.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
+.+.+.. ..+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++ .+++++++|+++++ ++++|
T Consensus 31 ~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~sf 100 (257)
T 4hg2_A 31 RWLGEVA--PARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPASV 100 (257)
T ss_dssp HHHHHHS--SCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSCE
T ss_pred HHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCcc
Confidence 3444443 34569999999999999999987 78999999999999988642 37999999999998 78999
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|+|++..++||++ ++.++++++|+|||||++++.....+
T Consensus 101 D~v~~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 101 DVAIAAQAMHWFD---LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEEEECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cEEEEeeehhHhh---HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9999999999885 57899999999999999999776544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=159.63 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=108.5
Q ss_pred HHHHHcC-CCCCCeEEEeccCchHHHHHHH----Hh-cCCEE--EEEcCCHHHHHHHHHHHHHc-CCCCCeEE--EEccc
Q 035870 620 LLIEKAR-VSKGQEVLEIGCGWGTLAIEIV----KR-TGCKY--TGITLSEEQLKYAEMKVKEA-GLQDLIRL--YLCDY 688 (842)
Q Consensus 620 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~la----~~-~~~~v--~gid~s~~~~~~a~~~~~~~-~l~~~v~~--~~~d~ 688 (842)
.++..+. ..++.+|||||||+|.++..++ .+ ++.+| +|+|+|++|++.|++++... +++ ++++ ..+|.
T Consensus 42 ~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~ 120 (292)
T 2aot_A 42 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETS 120 (292)
T ss_dssp HHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCH
T ss_pred hHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecch
Confidence 3333333 3577899999999998765433 32 45644 99999999999999998764 443 5544 45566
Q ss_pred cCCc-------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhccc-CC
Q 035870 689 RQLA-------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF-PG 760 (842)
Q Consensus 689 ~~~~-------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-p~ 760 (842)
.+++ ++++||+|++..+++|+++ +..++++++++|||||++++............+ ..+....-. +.
T Consensus 121 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~ 195 (292)
T 2aot_A 121 SEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLW---KKYGSRFPQDDL 195 (292)
T ss_dssp HHHHHHHHTTTCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHH---HHHGGGSCCCTT
T ss_pred hhhhhhhccccCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHH---HHHHHhccCCCc
Confidence 5443 2578999999999999987 899999999999999999998654322111000 011111000 12
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEE
Q 035870 761 GCLPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 761 ~~~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
...++..++.+.+.+ +||++...
T Consensus 196 ~~~~~~~~~~~~l~~-aGf~~~~~ 218 (292)
T 2aot_A 196 CQYITSDDLTQMLDN-LGLKYECY 218 (292)
T ss_dssp CCCCCHHHHHHHHHH-HTCCEEEE
T ss_pred ccCCCHHHHHHHHHH-CCCceEEE
Confidence 345688898888887 89988764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-15 Score=151.09 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=92.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEE-cchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIIS-CEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s-~~~~ 706 (842)
.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++. .+++++++|+.+++.+++||+|+| ..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcEEEEcCchH
Confidence 67889999999999999999988 559999999999999999874 268999999998876679999996 4599
Q ss_pred hhcCh-hhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 707 EAVGH-EFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 707 ~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+|+.+ +....++++++++|||||++++.....+.
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 99964 56889999999999999999998665543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=158.95 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=111.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEccc------cCCc---c
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-----LIRLYLCDY------RQLA---K 693 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-----~v~~~~~d~------~~~~---~ 693 (842)
+++.+|||||||+|..+..+++..+.+|+|+|+|++|++.|+++....+... ++++.+.|+ .+++ +
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3578999999999987666666546799999999999999999988765421 267888887 3322 4
Q ss_pred CCCccEEEEcchhhhc-ChhhHHHHHHHHHhccccCcEEEEEeecCCCccc--c-----cccC---ccc----------h
Q 035870 694 ANKYDRIISCEMIEAV-GHEFMEEFFGCCESLLAEDGLLVLQFISIPDERY--N-----EYRL---SSD----------F 752 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~-~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~--~-----~~~~---~~~----------~ 752 (842)
+++||+|+|..+++++ ..++...++++++++|||||++++.++....... . .... ... .
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 5799999999999875 3345789999999999999999998764221100 0 0000 000 0
Q ss_pred hhhcccCCC-------CCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 753 IKEYIFPGG-------CLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 753 ~~~~i~p~~-------~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
+..|. |.+ ++.+..++.+.+.+ +||+++....+..
T Consensus 207 ~~~~~-~~~~~~~~~e~~v~~~el~~l~~~-~Gl~lv~~~~f~~ 248 (302)
T 2vdw_A 207 IVVYN-PSTMSTPMTEYIIKKNDIVRVFNE-YGFVLVDNVDFAT 248 (302)
T ss_dssp EEEBC-TTTBSSCEEEECCCHHHHHHHHHH-TTEEEEEEEEHHH
T ss_pred cceee-ccccCCCceeeeeEHHHHHHHHHH-CCCEEEEecChHH
Confidence 01121 222 24567888777776 8999999987653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=156.84 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=100.2
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEccccCCc---
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ---DLIRLYLCDYRQLA--- 692 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~---~~v~~~~~d~~~~~--- 692 (842)
+.+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. .++.+..+|+.+++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 34455555567889999999999999999998 789999999999999999987544322 26889999988875
Q ss_pred -cCCCccEEEEc-chhhhcCh-----hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 693 -KANKYDRIISC-EMIEAVGH-----EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 -~~~~fD~i~s~-~~~~~~~~-----~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++++||+|++. .+++|+++ +.+..++++++++|||||++++....
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 56899999999 89999987 67899999999999999999997653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=152.52 Aligned_cols=120 Identities=25% Similarity=0.408 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
...+..++..+..+++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...++ +++++++|+.+++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK 103 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC
Confidence 455666777776678899999999999999999997 88999999999999999999988775 699999999988755
Q ss_pred CCccEEEEc-chhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 695 NKYDRIISC-EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 695 ~~fD~i~s~-~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++||+|++. ..+++.+.+....++++++++|||||.+++....
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 789999997 4566777667899999999999999999986543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=161.32 Aligned_cols=162 Identities=12% Similarity=0.192 Sum_probs=124.7
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
...+++.+.++++.+|||||||+|.++..+++. ++.+++++|++ .++. +++++..++.++|+++.+|+.+..+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~ 247 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREVP--H 247 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCCC--C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCCC--C
Confidence 456778888888999999999999999999988 67799999994 4444 4444445666789999999963223 8
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
||+|++..++||++++....++++++++|||||++++.+...++..........++ ......++...+.+++.+.+.+
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~-~~~~~~~~~~~t~~e~~~ll~~- 325 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDF-MMLAARTGQERTAAELEPLFTA- 325 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHH-HHHHTTSCCCCBHHHHHHHHHH-
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcCh-hhhhcCCCcCCCHHHHHHHHHH-
Confidence 99999999999999877789999999999999999998877665421111111111 1112366778899999888887
Q ss_pred CCcEEEEEEe
Q 035870 777 SRLCVEQVEN 786 (842)
Q Consensus 777 ~gf~v~~~~~ 786 (842)
+||+++++..
T Consensus 326 aGf~~~~~~~ 335 (348)
T 3lst_A 326 AGLRLDRVVG 335 (348)
T ss_dssp TTEEEEEEEE
T ss_pred CCCceEEEEE
Confidence 8999988876
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=144.03 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=99.5
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
...+++.+.++++.+|||||||+|.++..+++. +..+|+++|+|+++++.|+++++..++ ++++++++|+.+.. ..+
T Consensus 29 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 29 RAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSC
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCC
Confidence 356778888999999999999999999999998 358999999999999999999999888 58999999986654 447
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|++..+++ .+..+++++.++|||||++++...
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999988765 378999999999999999999654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=155.40 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=115.9
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGL--------------------------- 677 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l--------------------------- 677 (842)
...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4567889999999999999998887 55 999999999999999998865421
Q ss_pred -CCCe-EEEEccccCCc--cC---CCccEEEEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEeecCCCcccccccC
Q 035870 678 -QDLI-RLYLCDYRQLA--KA---NKYDRIISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748 (842)
Q Consensus 678 -~~~v-~~~~~d~~~~~--~~---~~fD~i~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~ 748 (842)
..++ +++++|+.+.. ++ ++||+|+++.+++|+... .+..+++++.++|||||++++.+..... .+...
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~-- 208 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-YYMIG-- 208 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEEET--
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-eEEcC--
Confidence 0127 99999998764 34 789999999999966433 5889999999999999999998754332 11100
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccH
Q 035870 749 SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHY 791 (842)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y 791 (842)
...++ ....+.+++.+.+.+ +||+++.++....+|
T Consensus 209 ------~~~~~-~~~~~~~~~~~~l~~-aGf~~~~~~~~~~~~ 243 (265)
T 2i62_A 209 ------EQKFS-SLPLGWETVRDAVEE-AGYTIEQFEVISQNY 243 (265)
T ss_dssp ------TEEEE-CCCCCHHHHHHHHHH-TTCEEEEEEEECCCC
T ss_pred ------Ccccc-ccccCHHHHHHHHHH-CCCEEEEEEEecccC
Confidence 00000 123467788888877 899999988766444
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=148.79 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=107.0
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
..++..+.. ++.+|||||||+|.++..+ +. +|+|+|+|+.+++.++++. .+++++++|+.+++ ++++
T Consensus 27 ~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~ 95 (211)
T 2gs9_A 27 ERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGES 95 (211)
T ss_dssp HHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSC
T ss_pred HHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCc
Confidence 344555433 7889999999999998877 56 9999999999999999886 37899999999988 6689
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMS 774 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 774 (842)
||+|++..+++|+++ +..+++++.++|||||++++.++.........+.. ........+......+.+++.+.+.
T Consensus 96 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 96 FDVVLLFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSPWAALYRR-LGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp EEEEEEESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHH-HHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred EEEEEEcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHH-HhhccCccccccccCCHHHHHHHhc
Confidence 999999999999976 88999999999999999999887654321111000 0000001112345678999987765
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=148.54 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=108.6
Q ss_pred CCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhh
Q 035870 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEA 708 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~ 708 (842)
+.+|||||||+|.++..+++. +|+|+|+.+++.++++ +++++++|+.+++ ++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999888754 9999999999999876 5789999998887 5679999999999999
Q ss_pred cChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 709 VGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
+++ +..+++++.++|||||.+++............+... ......+......+..++.+.+.+ +||+++.+...
T Consensus 115 ~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~-~Gf~~~~~~~~ 188 (219)
T 1vlm_A 115 VDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN--KEKSVFYKNARFFSTEELMDLMRK-AGFEEFKVVQT 188 (219)
T ss_dssp SSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT--TTC-CCSTTCCCCCHHHHHHHHHH-TTCEEEEEEEE
T ss_pred ccC--HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH--hcCcchhcccccCCHHHHHHHHHH-CCCeEEEEecc
Confidence 976 789999999999999999998765432211100000 000111123455789999888887 89999887764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=143.04 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=112.1
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccE
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDR 699 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~ 699 (842)
++..+ ++++.+|||||||+|.++..+++. +.+|+++|+|+.+++.++++. .+++++++|+.+++ ++++||+
T Consensus 39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~ 110 (195)
T 3cgg_A 39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDL 110 (195)
T ss_dssp HHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEE
T ss_pred HHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeE
Confidence 44444 568889999999999999999998 889999999999999999875 26899999998876 5679999
Q ss_pred EEEc-chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 700 IISC-EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 700 i~s~-~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
|+++ .+++|++.+....+++++.++|||||.+++...... ..+..++.+.+.+ +|
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-----------------------~~~~~~~~~~l~~-~G 166 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-----------------------GWVFGDFLEVAER-VG 166 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-----------------------SCCHHHHHHHHHH-HT
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------------------CcCHHHHHHHHHH-cC
Confidence 9998 789999877789999999999999999999653321 1356777777776 79
Q ss_pred cEEEEEEe
Q 035870 779 LCVEQVEN 786 (842)
Q Consensus 779 f~v~~~~~ 786 (842)
|++.....
T Consensus 167 f~~~~~~~ 174 (195)
T 3cgg_A 167 LELENAFE 174 (195)
T ss_dssp EEEEEEES
T ss_pred CEEeeeec
Confidence 99887754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=150.06 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=89.4
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c---cCCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A---KANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~~fD~i~s~ 703 (842)
++.+|||||||+|.++..+|+. ++.+|+|+|+|+.+++.|+++++..++. +++++++|+.++ + ++++||.|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5779999999999999999987 6789999999999999999999999886 799999998874 2 56899999998
Q ss_pred chhhhcChhhH------HHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVGHEFM------EEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~~~~~------~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+...... +.+++++.++|||||.+++.+
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 54433322111 369999999999999999965
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=158.44 Aligned_cols=153 Identities=17% Similarity=0.307 Sum_probs=108.7
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC-----------------------------
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ----------------------------- 678 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~----------------------------- 678 (842)
++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 6889999999999999999998 4689999999999999999987665422
Q ss_pred ----------------------------CCeEEEEccccCCc------cCCCccEEEEcchhhhc----ChhhHHHHHHH
Q 035870 679 ----------------------------DLIRLYLCDYRQLA------KANKYDRIISCEMIEAV----GHEFMEEFFGC 720 (842)
Q Consensus 679 ----------------------------~~v~~~~~d~~~~~------~~~~fD~i~s~~~~~~~----~~~~~~~~~~~ 720 (842)
++|+++++|+.+.. .+++||+|+|..+++|+ +++.+..+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 58999999987654 45899999999999888 55678999999
Q ss_pred HHhccccCcEEEEEeecCCCcccccccCcc-chhhhcccCCCCCCCHHHHHHHHhh-cCCcEEEEEEe
Q 035870 721 CESLLAEDGLLVLQFISIPDERYNEYRLSS-DFIKEYIFPGGCLPSLSRITSAMSV-ASRLCVEQVEN 786 (842)
Q Consensus 721 ~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~p~~~~~~~~~~~~~~~~-~~gf~v~~~~~ 786 (842)
++++|||||++++...... .|....... .....|- .......++.+.+.+ .+||+...+..
T Consensus 206 ~~~~LkpGG~lil~~~~~~--~y~~~~~~~~~~~~~~~---~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWS--SYGKRKTLTETIYKNYY---RIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHH--HHHTTTTSCHHHHHHHH---HCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCch--hhhhhhcccHHHHhhhh---cEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 9999999999999643211 111111111 1111111 011235667666664 47997665544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=146.12 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=105.7
Q ss_pred HcCCCCCCeEEEeccC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEE
Q 035870 624 KARVSKGQEVLEIGCG-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRI 700 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i 700 (842)
...++++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++..+++ +++++++|+..+. ++++||+|
T Consensus 50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I 127 (230)
T 3evz_A 50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVI 127 (230)
T ss_dssp HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEE
T ss_pred HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEE
Confidence 3346789999999999 99999999987678999999999999999999999987 7999999975443 45899999
Q ss_pred EEcchhhhcCh-----------------hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCC
Q 035870 701 ISCEMIEAVGH-----------------EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCL 763 (842)
Q Consensus 701 ~s~~~~~~~~~-----------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~ 763 (842)
+++..+.+.++ +.+..+++++.++|||||++++......
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------ 183 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------ 183 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH------------------------
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH------------------------
Confidence 99977765433 2247899999999999999998533211
Q ss_pred CCHHHHHHHHhhcCCcEEEEEEe
Q 035870 764 PSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 764 ~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
....++.+.+.+ .||++..++.
T Consensus 184 ~~~~~~~~~l~~-~g~~~~~~~~ 205 (230)
T 3evz_A 184 KLLNVIKERGIK-LGYSVKDIKF 205 (230)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEEE
T ss_pred hHHHHHHHHHHH-cCCceEEEEe
Confidence 023455566665 7998776643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-15 Score=142.16 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-Ccc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~ 693 (842)
.....+++.+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|++++...++++++ ++++|..+ ++.
T Consensus 12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~ 90 (178)
T 3hm2_A 12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD 90 (178)
T ss_dssp HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence 33456778888899999999999999999999988 5789999999999999999999999988789 88888754 332
Q ss_pred -CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 694 -ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 694 -~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.++||+|++..+++| ..+++++.++|||||++++..+.
T Consensus 91 ~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred cCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 279999999998887 57899999999999999987654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=144.22 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=96.9
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCcc
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYD 698 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD 698 (842)
....++++.+|||+|||+|.++..+++. +..+|+|+|+|+++++.|+++++..++.++++++++|+.+++ .+++||
T Consensus 16 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp HHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred HHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence 3445688999999999999999999998 457999999999999999999999988678999999988875 457899
Q ss_pred EEEEcchhhh-------cChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 699 RIISCEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 699 ~i~s~~~~~~-------~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+|+++..+.. ...+....+++++.++|||||++++..+..
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 9999875511 112245679999999999999999976543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=149.93 Aligned_cols=165 Identities=9% Similarity=0.090 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCeEEEeccCc---hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE
Q 035870 610 LKAAQMRKVSLLIEKAR-VSKGQEVLEIGCGW---GTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLY 684 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~-~~~~~~vLDiGcG~---G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~ 684 (842)
...+++..++.+++.+. ..+..+|||||||+ |.++..+++. ++.+|+++|+|+.|++.|++++.. .++++++
T Consensus 57 ~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~ 133 (274)
T 2qe6_A 57 SAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVF 133 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEE
T ss_pred HHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEE
Confidence 44556667777777765 34457999999999 9887766665 678999999999999999999843 2489999
Q ss_pred EccccCCc------------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccch
Q 035870 685 LCDYRQLA------------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDF 752 (842)
Q Consensus 685 ~~d~~~~~------------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~ 752 (842)
++|+.+.. +.++||+|+++.+++|++++....++++++++|||||++++.+..... . .........
T Consensus 134 ~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~-~~~~~~~~~ 211 (274)
T 2qe6_A 134 TADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L-PAQQKLARI 211 (274)
T ss_dssp ECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C-HHHHHHHHH
T ss_pred EeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h-HHHHHHHHH
Confidence 99997631 124899999999999999877899999999999999999998876532 1 111111111
Q ss_pred hhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 753 IKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 753 ~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
+.....| ....+.+++.+.+ .||++.+
T Consensus 212 ~~~~~~~-~~~~s~~ei~~~l---~G~~l~~ 238 (274)
T 2qe6_A 212 TRENLGE-GWARTPEEIERQF---GDFELVE 238 (274)
T ss_dssp HHHHHSC-CCCBCHHHHHHTT---TTCEECT
T ss_pred HHhcCCC-CccCCHHHHHHHh---CCCeEcc
Confidence 1111123 3556888887665 3887654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=141.27 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=95.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~ 704 (842)
.++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++++.+++ ++++++++|+.++. ++++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 57889999999999999988887556899999999999999999999988 58999999998865 268999999998
Q ss_pred hhhhcChhhHHHHHHHHHh--ccccCcEEEEEeecC
Q 035870 705 MIEAVGHEFMEEFFGCCES--LLAEDGLLVLQFISI 738 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~--~LkpgG~~~~~~~~~ 738 (842)
.+++. .+.+..+++.+.+ +|||||+++++....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87764 2358899999999 999999999977654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=145.92 Aligned_cols=112 Identities=21% Similarity=0.143 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
.....+++.+.++++.+|||||||+|.++..+++. +.+|+++|+|+++++.|++++...+++ +++++.+|..+.. .+
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccC
Confidence 44567788888899999999999999999999998 889999999999999999999998887 7999999998765 56
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++||+|++..+++|+++ ++.++|||||++++....
T Consensus 142 ~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 79999999999999875 478999999999997655
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=135.70 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
.+.++|||||||||.++..++.. ++++|+++|+|+.|++.+++++..+|+..++++ .|....++.++||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 56779999999999999999877 778999999999999999999999998766666 666554566889999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|++ + +.+..+..+.+.|||||.++-..
T Consensus 126 HlL-~-~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVL-K-QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHH-H-HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhh-h-hhHHHHHHHHHHhCCCCEEEEeC
Confidence 999 3 35666779999999999988754
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=153.60 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=131.0
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
...+++..++.+..+|||||||+|.++..++++ ++.+++..|+ +++++.|++++...+ .++|+++.+|+.+.+. ..
T Consensus 168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~ 244 (353)
T 4a6d_A 168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PE 244 (353)
T ss_dssp HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CC
T ss_pred HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC-CC
Confidence 345667777788889999999999999999998 7889999998 889999998876544 5699999999876543 46
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
+|+|++..++|+.++++...+++++++.|+|||+++|.+...++..........--+.-....+|...|..++.+.+++
T Consensus 245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~- 323 (353)
T 4a6d_A 245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS- 323 (353)
T ss_dssp CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH-
T ss_pred ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH-
Confidence 8999999999999998889999999999999999999988766543221111000111123456777899999888887
Q ss_pred CCcEEEEEEecC
Q 035870 777 SRLCVEQVENIG 788 (842)
Q Consensus 777 ~gf~v~~~~~~~ 788 (842)
+||+++++...+
T Consensus 324 AGf~~v~v~~~~ 335 (353)
T 4a6d_A 324 AGFRDFQFKKTG 335 (353)
T ss_dssp HTCEEEEEECCS
T ss_pred CCCceEEEEEcC
Confidence 899998887654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=144.80 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=105.9
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~ 696 (842)
+.+.++||++|||+|||+|.++.++|+. +..+|+|+|+|++|++.+++++++.+ ++..+..|..+.. ..+.
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGGGTTTCCC
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCccccccccce
Confidence 4567899999999999999999999998 56799999999999999998876543 8999999986643 4578
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
+|+|++.. .|.. +...+++++++.|||||++++.......... . |. .....+..+.+.+
T Consensus 148 vDvVf~d~--~~~~--~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~----~----------p~--~~~~~~ev~~L~~- 206 (233)
T 4df3_A 148 VDGLYADV--AQPE--QAAIVVRNARFFLRDGGYMLMAIKARSIDVT----T----------EP--SEVYKREIKTLMD- 206 (233)
T ss_dssp EEEEEECC--CCTT--HHHHHHHHHHHHEEEEEEEEEEEECCHHHHH----T----------CC--CHHHHHHHHHHHH-
T ss_pred EEEEEEec--cCCh--hHHHHHHHHHHhccCCCEEEEEEecccCCCC----C----------Ch--HHHHHHHHHHHHH-
Confidence 99998743 3333 3688999999999999999986422211100 0 00 0012334455665
Q ss_pred CCcEEEEEEecCc
Q 035870 777 SRLCVEQVENIGI 789 (842)
Q Consensus 777 ~gf~v~~~~~~~~ 789 (842)
+||++.+..++.+
T Consensus 207 ~GF~l~e~i~L~p 219 (233)
T 4df3_A 207 GGLEIKDVVHLDP 219 (233)
T ss_dssp TTCCEEEEEECTT
T ss_pred CCCEEEEEEccCC
Confidence 8999988887754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.8e-15 Score=154.75 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHH-------HHcCC-CCCeEEEE
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKV-------KEAGL-QDLIRLYL 685 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~-------~~~~l-~~~v~~~~ 685 (842)
...+..+++.+.++++++|||||||+|.+++.+|...++ +|+|||+|+.+++.|++++ +..|+ .++|+|++
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 456678899999999999999999999999999987566 5999999999999998754 44566 35899999
Q ss_pred ccccCCc-cC--CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 686 CDYRQLA-KA--NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 686 ~d~~~~~-~~--~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
+|+.+++ .+ ..||+|+++..+. . .+....|+++.++|||||++++.....+..
T Consensus 239 GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 239 GDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp CCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred CcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 9999887 22 4799999987753 2 347888999999999999999987666654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=146.80 Aligned_cols=157 Identities=19% Similarity=0.231 Sum_probs=115.7
Q ss_pred HhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHH
Q 035870 589 SLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYA 668 (842)
Q Consensus 589 ~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a 668 (842)
...+++.+.|..+.... . ...+ ..+... ++++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|
T Consensus 90 ~~~l~p~~~fgtg~~~t-----t---~~~~-~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a 158 (254)
T 2nxc_A 90 PLVIEPGMAFGTGHHET-----T---RLAL-KALARH-LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQA 158 (254)
T ss_dssp EEECCCC-----CCSHH-----H---HHHH-HHHHHH-CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHH
T ss_pred EEEECCCccccCCCCHH-----H---HHHH-HHHHHh-cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHH
Confidence 45677777765554321 1 1122 223333 568899999999999999999887 66999999999999999
Q ss_pred HHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC
Q 035870 669 EMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748 (842)
Q Consensus 669 ~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~ 748 (842)
++++..+++. +++.++|+.+..++++||+|+++...++ ...+++++.++|||||++++..+...
T Consensus 159 ~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~~~-----~~~~l~~~~~~LkpgG~lils~~~~~--------- 222 (254)
T 2nxc_A 159 EANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTGILKD--------- 222 (254)
T ss_dssp HHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCHHH-----HHHHHHHHHHHEEEEEEEEEEEEEGG---------
T ss_pred HHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcHHH-----HHHHHHHHHHHcCCCCEEEEEeeccC---------
Confidence 9999998875 8999999876333578999999876554 57899999999999999999755321
Q ss_pred ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCc
Q 035870 749 SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 749 ~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~ 789 (842)
...++.+.+.+ +||++......+.
T Consensus 223 ----------------~~~~v~~~l~~-~Gf~~~~~~~~~~ 246 (254)
T 2nxc_A 223 ----------------RAPLVREAMAG-AGFRPLEEAAEGE 246 (254)
T ss_dssp ----------------GHHHHHHHHHH-TTCEEEEEEEETT
T ss_pred ----------------CHHHHHHHHHH-CCCEEEEEeccCC
Confidence 24566666766 8999988776543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-14 Score=159.84 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEccc
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEA------GLQDLIRLYLCDY 688 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~------~l~~~v~~~~~d~ 688 (842)
.++.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++... ++. +++++++|+
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa 787 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCT
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECch
Confidence 344556666556889999999999999999998832 79999999999999999987643 443 799999999
Q ss_pred cCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 689 RQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 689 ~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.+++ .+++||+|++..+++|+++.....+++++.++|||| .+++.++..
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9998 668999999999999999877778999999999999 777766543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=139.27 Aligned_cols=118 Identities=25% Similarity=0.424 Sum_probs=103.4
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-LIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~~~~~~f 697 (842)
+.+++.+..+++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++++ +++++++|+.+..++++|
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCc
Confidence 46778888889999999999999999999998 8899999999999999999999888864 499999998876556789
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+|+++.++++. .+....+++++.++|||||.+++.....
T Consensus 121 D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 121 NKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp EEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred eEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 999999887763 3457899999999999999999976643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=148.65 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=114.5
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc------CCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK------ANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~------~~~fD~i 700 (842)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.+++. ...||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence 578899999999999999999998 5699999999999999998862 2379999999988651 1359999
Q ss_pred EEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccc-c----cCccchh----hhcccCCCCCCCHHHHHH
Q 035870 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE-Y----RLSSDFI----KEYIFPGGCLPSLSRITS 771 (842)
Q Consensus 701 ~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~-~----~~~~~~~----~~~i~p~~~~~~~~~~~~ 771 (842)
+++.+++|++.++...+++++.++|||||++++.++..++..+.. . ......+ ..-..|+ ..+.+++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 206 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPG--IFTAEDIEL 206 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCC--CCCHHHHHH
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCC--ccCHHHHHH
Confidence 999999999977799999999999999999999887765432110 0 0001111 1111121 247788877
Q ss_pred HHhhcCCcEEEEEEec
Q 035870 772 AMSVASRLCVEQVENI 787 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~ 787 (842)
.+ +||+++.....
T Consensus 207 ~~---aGf~~~~~~~~ 219 (245)
T 3ggd_A 207 YF---PDFEILSQGEG 219 (245)
T ss_dssp HC---TTEEEEEEECC
T ss_pred Hh---CCCEEEecccc
Confidence 66 69999886654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=146.86 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=108.8
Q ss_pred ccCchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHH
Q 035870 566 RQNTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAI 645 (842)
Q Consensus 566 ~~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~ 645 (842)
..++.....+.++..||...+... . ....+.+..++..+. +++.+|||||||+|.++.
T Consensus 13 ~~~~~~~~~~~~a~~Yd~~~~~~~--------------------~-~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~ 70 (260)
T 2avn_A 13 MKLRSWEFYDRIARAYDSMYETPK--------------------W-KLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSL 70 (260)
T ss_dssp EECCHHHHHHHHHHHHGGGGCSHH--------------------H-HHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHH
T ss_pred hhhhhcchhhHHHHHHHHhccccc--------------------h-hHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHHHH
Confidence 356677778888888875431110 0 112233334444432 378899999999999999
Q ss_pred HHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhc
Q 035870 646 EIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESL 724 (842)
Q Consensus 646 ~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~ 724 (842)
.+++. +.+|+|+|+|+++++.|+++.. . .++++|+.+++ ++++||+|++..+++|+..+ +..+++++.++
T Consensus 71 ~l~~~-~~~v~gvD~s~~~l~~a~~~~~------~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~~~l~~~~~~ 141 (260)
T 2avn_A 71 FLQER-GFEVVLVDPSKEMLEVAREKGV------K-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-KDKAFSEIRRV 141 (260)
T ss_dssp HHHTT-TCEEEEEESCHHHHHHHHHHTC------S-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-HHHHHHHHHHH
T ss_pred HHHHc-CCeEEEEeCCHHHHHHHHhhcC------C-CEEECcHHHCCCCCCCEEEEEEcchhhhcccc-HHHHHHHHHHH
Confidence 99987 8899999999999999998753 1 28899999887 67899999999888877433 89999999999
Q ss_pred cccCcEEEEEeecC
Q 035870 725 LAEDGLLVLQFISI 738 (842)
Q Consensus 725 LkpgG~~~~~~~~~ 738 (842)
|||||++++...+.
T Consensus 142 LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 142 LVPDGLLIATVDNF 155 (260)
T ss_dssp EEEEEEEEEEEEBH
T ss_pred cCCCeEEEEEeCCh
Confidence 99999999987653
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=152.25 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHH--HHhhcCCCChHHHHhcccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDA--LKILGNQATFDETRILGAF 291 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~--~~ll~~~~~~~~~~~l~~~ 291 (842)
...++..|.+.++++|++|+++++|++|..+++++.|++.+| ++.||+||+|+..+.. ...+... .+
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~----------~~ 221 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR----------PL 221 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC----------CC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC----------CC
Confidence 468999999999999999999999999999988899999888 8999999999987642 2222210 01
Q ss_pred ceeece-EEEecCCC--CcCCC-CCCc--ceeeecccCCCceEEEEEcccc-c--CCC-C-----CCCCeEEecCCCCCC
Q 035870 292 QYVYSD-IFLHRDKR--FMPQN-PAAW--SAWNFLESFDSKVCLTYWLNVL-Q--NLG-E-----TSLPFLVTLNPDHVP 356 (842)
Q Consensus 292 ~~~~~~-v~l~~~~~--~~p~~-~~~~--~~~~~~~~~~~~~~v~~~~~~l-~--~l~-~-----~~~~~~~~l~~~~~~ 356 (842)
+..+.+ .++.++.+ ..+.. ...+ ....|.....+...+....... . +.. + .+.+.+..+ +....
T Consensus 222 ~~~p~rg~~~~~~~~~~~~~~~~p~~~~~~~~~y~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 300 (381)
T 3nyc_A 222 GLQPKRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEA-TTLTI 300 (381)
T ss_dssp CCEEEEEEEEEECCCTTCCCTTCCEEEETTSSCEEEEETTEEEEECCCCEECCSSCCCCCHHHHHHHHHHHHHH-BSCCC
T ss_pred ceeeeEEEEEEECCCcCCCcCccceEEeCCCCEEEEeCCCcEEEeCCcCCCCCcccCCCChHHHHHHHHHHHhc-CCCcc
Confidence 222211 11222211 11110 0000 0011111111333332111100 0 000 0 000001111 11122
Q ss_pred cceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 357 EHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 357 ~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
..+...|...+|. +.+..+.+...+..+|||++.+|.|.|+ ..|..+|+.+|+.|++.+.+
T Consensus 301 ~~~~~~w~G~r~~----t~D~~p~ig~~~~~~~l~~a~G~~g~G~-~~ap~~g~~la~~i~g~~~~ 361 (381)
T 3nyc_A 301 RRPEHTWAGLRSF----VADGDLVAGYAANAEGFFWVAAQGGYGI-QTSAAMGEASAALIRHQPLP 361 (381)
T ss_dssp CCCSEEEEEEEEE----CTTSCCEEEECTTSTTEEEEECCTTCTT-TTHHHHHHHHHHHHTTCCCC
T ss_pred cceeeeeEEcccc----CCCCCceecCCCCCCCeEEEEcCCChhH-hhCHHHHHHHHHHHhCCCCC
Confidence 2355677664442 1122333344445689999999999999 89999999999999987743
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-15 Score=150.90 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=88.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEE-
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIIS- 702 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s- 702 (842)
..+|.+|||||||+|..+..+++..+.+||+||+|+++++.|+++....+. +++++.+|+.++. ++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence 468899999999999999999987557999999999999999999887664 6899999987653 5688999975
Q ss_pred ----cchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 703 ----CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 703 ----~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
...++|+.+ ++.++++++|+|||||+|++..
T Consensus 136 ~~~~~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 136 TYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECC
T ss_pred eeecccchhhhcc--hhhhhhhhhheeCCCCEEEEEe
Confidence 455666654 8899999999999999998743
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=144.79 Aligned_cols=130 Identities=13% Similarity=0.180 Sum_probs=103.5
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c---CCCccEEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K---ANKYDRII 701 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~---~~~fD~i~ 701 (842)
++++.+|||||||+|.++..+++. ++.+|+|+|+|+++++.|+++++..+++ +++++++|+.+++ . +++||+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEE
Confidence 357889999999999999999975 6789999999999999999999999886 6999999998765 2 57899999
Q ss_pred EcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEE
Q 035870 702 SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCV 781 (842)
Q Consensus 702 s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v 781 (842)
|..+ . .+..+++.+.++|||||++++....... ....++.+.+.+ .||++
T Consensus 147 ~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~g~~~~-----------------------~~~~~~~~~l~~-~g~~~ 196 (240)
T 1xdz_A 147 ARAV----A--RLSVLSELCLPLVKKNGLFVALKAASAE-----------------------EELNAGKKAITT-LGGEL 196 (240)
T ss_dssp EECC----S--CHHHHHHHHGGGEEEEEEEEEEECC-CH-----------------------HHHHHHHHHHHH-TTEEE
T ss_pred Eecc----C--CHHHHHHHHHHhcCCCCEEEEEeCCCch-----------------------HHHHHHHHHHHH-cCCeE
Confidence 9763 3 3789999999999999999885211100 012345555665 79988
Q ss_pred EEEEec
Q 035870 782 EQVENI 787 (842)
Q Consensus 782 ~~~~~~ 787 (842)
.....+
T Consensus 197 ~~~~~~ 202 (240)
T 1xdz_A 197 ENIHSF 202 (240)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 777654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=144.71 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=96.3
Q ss_pred HHHHcCCC-CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCC
Q 035870 621 LIEKARVS-KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANK 696 (842)
Q Consensus 621 l~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~ 696 (842)
+...+.++ ++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++..+++.++++++++|+.++. ++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 44556677 8999999999999999999998555999999999999999999999999888999999998876 2689
Q ss_pred ccEEEEcchhhhc------------------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAV------------------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~------------------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|+++..+.+. ....+..+++.+.++|||||++++.
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 9999998765443 1123578999999999999999984
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-17 Score=165.13 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c-C
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K-A 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~-~ 694 (842)
..+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++. ..++++++++|+.+++ + +
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccC
Confidence 4567888888889999999999999999999998 6899999999999999988765 2348999999999887 3 3
Q ss_pred CCccEEEEcch-----------hhhcChhhHHHHH----HHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccC
Q 035870 695 NKYDRIISCEM-----------IEAVGHEFMEEFF----GCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFP 759 (842)
Q Consensus 695 ~~fD~i~s~~~-----------~~~~~~~~~~~~~----~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p 759 (842)
++| .|+++.. ++|... ...++ +.+.++|||||.+.+..... ....+..+++|
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~~~~--~~~~lm~q~e~a~rll~~~G~l~v~~~~~----------~~~~~~~~v~~ 159 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFESRA--SDIYLIVEEGFYKRTLDIHRTLGLLLHTQ----------VSIQQLLKLPA 159 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHHCCC--EEEEEEEESSHHHHHHCGGGSHHHHTTTT----------BCCCEEEEECC
T ss_pred CCc-EEEEeCCccccHHHHHHHHhCCCC--CeEEEEeeHHHHHHHhCCCCchhhhheeh----------eeEEEEEEECc
Confidence 678 7777642 222111 23444 67999999999987733211 11223345566
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEEEe--------cCccHHHHHHHHH--------------HHHH-HhHHHHHhccCCH
Q 035870 760 GGCLPSLSRITSAMSVASRLCVEQVEN--------IGIHYYQTLRCWR--------------KNFM-EKQSKILALGFND 816 (842)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~gf~v~~~~~--------~~~~y~~tl~~w~--------------~~~~-~~~~~~~~~g~~~ 816 (842)
++..|.+.. .-.+..... -..+|..+++.|. +++. ..+..+..+. .|
T Consensus 160 ~~f~P~p~v---------~s~~v~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~~~r~~~l~-~~ 229 (245)
T 1yub_A 160 ECFHPKPKV---------NSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTIT-YE 229 (245)
T ss_dssp TTSBSSCCS---------CEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSHHHHHHHHTTCSCTTSCC-SH
T ss_pred hhccCCCCc---------eEEEEEEEECCCCCCcccHHHHHHHHHHHHhhcchhhhchHHHHHHcCCCCCCChhhCC-HH
Confidence 666665211 111221111 1235889999985 3332 1222333444 39
Q ss_pred HHHHHHHHHHHHHHH
Q 035870 817 KFIRTWEYYFDYCAA 831 (842)
Q Consensus 817 ~~~r~w~~y~~~~~~ 831 (842)
.|.|+|++|+++|++
T Consensus 230 ~f~~l~~~~~~~~~~ 244 (245)
T 1yub_A 230 QVLSIFNSYLLFNGR 244 (245)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999974
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=162.01 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCC---CeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSS---EVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~---~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+++.|.+.+++.|++|++++ +|++|..++++|. |++.+|+++.||.||+|+..+.
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 56899999999999999999999 9999999888887 9999998899999999998874
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-14 Score=153.10 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=123.5
Q ss_pred HHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 618 VSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 618 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...+++.+. +.+..+|||||||+|.++..++++ ++.+++++|+ +.+++.|+++ ++++++.+|+.+..+.
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~- 261 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPK- 261 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC-
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCC-
Confidence 455666665 677889999999999999999988 6789999999 8888877642 3899999998762243
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccccc----CccchhhhcccCCCCCCCHHHHHH
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR----LSSDFIKEYIFPGGCLPSLSRITS 771 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~p~~~~~~~~~~~~ 771 (842)
. |+|++..++||++++....++++++++|||||++++.+...++....... ...++......+++...+..++.+
T Consensus 262 ~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ 340 (368)
T 3reo_A 262 G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQA 340 (368)
T ss_dssp C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHH
T ss_pred C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHH
Confidence 3 99999999999999888899999999999999999998876654321100 011111111235777889999988
Q ss_pred HHhhcCCcEEEEEEecC
Q 035870 772 AMSVASRLCVEQVENIG 788 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~~ 788 (842)
.+++ +||+++++....
T Consensus 341 ll~~-AGF~~v~~~~~~ 356 (368)
T 3reo_A 341 LAMA-SGFRGFKVASCA 356 (368)
T ss_dssp HHHH-TTCCEEEEEEEE
T ss_pred HHHH-CCCeeeEEEEeC
Confidence 8887 899998877653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=138.11 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=98.4
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-c
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-K 693 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~ 693 (842)
..+.+++.+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+++++.|+++++..++.++++++++|+.+. + .
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL 97 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh
Confidence 3345666665 56888999999999999999998844699999999999999999999998877899999998874 3 3
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHH--hccccCcEEEEEeecCC
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFISIP 739 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~~~~ 739 (842)
+++||+|+++..++. ......++.+. ++|||||.+++......
T Consensus 98 ~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 98 TGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred cCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 467999999877643 23567777776 99999999999776543
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-13 Score=140.06 Aligned_cols=56 Identities=38% Similarity=0.586 Sum_probs=54.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeec
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFN 57 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~ 57 (842)
||+|||||+|||+||+.|+++|++|+||||++.+||++++.+..+..+|.|++++.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~ 59 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT 59 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccc
Confidence 89999999999999999999999999999999999999999999999999998884
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=151.51 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=124.9
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
....+++.+. ..+..+|||||||+|.++..++++ ++.+++++|+ +++++.|+++ ++++++.+|+.+ + +
T Consensus 188 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p 258 (364)
T 3p9c_A 188 ITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVP 258 (364)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCC
Confidence 3456677776 778899999999999999999988 6789999999 8888877642 489999999887 4 4
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccccc----CccchhhhcccCCCCCCCHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR----LSSDFIKEYIFPGGCLPSLSRI 769 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~p~~~~~~~~~~ 769 (842)
. . |+|++..++|+++++....++++++++|||||++++.+...++....... ...++...-..+++...+.+++
T Consensus 259 ~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~ 336 (364)
T 3p9c_A 259 S-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF 336 (364)
T ss_dssp C-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHH
T ss_pred C-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHH
Confidence 3 3 99999999999999888999999999999999999998877654321110 0011111112467788899999
Q ss_pred HHHHhhcCCcEEEEEEecC
Q 035870 770 TSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 770 ~~~~~~~~gf~v~~~~~~~ 788 (842)
.+.+++ +||+++++....
T Consensus 337 ~~ll~~-AGF~~v~~~~~~ 354 (364)
T 3p9c_A 337 QALARG-AGFTGVKSTYIY 354 (364)
T ss_dssp HHHHHH-TTCCEEEEEEEE
T ss_pred HHHHHH-CCCceEEEEEcC
Confidence 888887 899998887654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=163.48 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
...++..|.+.+++.|++|+++++|++|..++++|.|++.+|+++.||.||+|+..+
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence 468999999999999999999999999999999999999888889999999999877
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-13 Score=151.17 Aligned_cols=113 Identities=12% Similarity=0.180 Sum_probs=80.8
Q ss_pred ccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHH----HHHHhhccccccCCCCceEEecCChhHHHH
Q 035870 144 RSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSV----LSFCRNHHLLQLFGRPQWLTVRWRSHSYVN 219 (842)
Q Consensus 144 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~ 219 (842)
+..++.+|+++.+.++.....+...+ ++..... . ++... ..++.. ...++...+.++.||++.|++
T Consensus 313 d~~S~~d~L~~~~ls~~L~~~L~~~l--al~~~~~--~---pa~~~l~~i~~~l~s---l~~yg~sg~~yp~GG~g~L~q 382 (650)
T 1vg0_A 313 EGTTFSEYLKTQKLTPNLQYFVLHSI--AMTSETT--S---CTVDGLKATKKFLQC---LGRYGNTPFLFPLYGQGELPQ 382 (650)
T ss_dssp TTSBHHHHHTTSSSCHHHHHHHHHHT--TC--CCS--C---BHHHHHHHHHHHHHH---TTSSSSSSEEEETTCTTHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHH--hccCCCC--C---chhHHHHHHHHHHHH---HHhhccCceEEeCCchhHHHH
Confidence 57899999999988887665554332 2222211 1 22222 222221 111333588999999999999
Q ss_pred HHHHHhhhcCceEEeCCCeeEEEeCC--CcE-EEEeCCCcEEeCCEEEEc
Q 035870 220 KVRKQLESWGCQIRTSSEVCSVLPAD--KGC-TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 220 ~L~~~l~~~G~~i~~~~~V~~I~~~~--~~v-~V~~~~G~~~~ad~VV~A 266 (842)
+|++.+...|++|+++++|++|..++ +++ .|++.+|+++.||+||++
T Consensus 383 aL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~ 432 (650)
T 1vg0_A 383 CFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 432 (650)
T ss_dssp HHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred HHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence 99999999999999999999999887 555 555678999999999994
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=144.00 Aligned_cols=131 Identities=16% Similarity=0.168 Sum_probs=106.1
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.++++++++|+.++..+++||+|+++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 46789999999999999999999833379999999999999999999999987899999999998766899999996542
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
. ...+++++.++|||||.+++.+++..... .-....++.+.+.+ .|+++..
T Consensus 203 ~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-------------------~~~~~~~i~~~~~~-~G~~~~~ 253 (278)
T 2frn_A 203 R------THEFIPKALSIAKDGAIIHYHNTVPEKLM-------------------PREPFETFKRITKE-YGYDVEK 253 (278)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-------------------TTTTHHHHHHHHHH-TTCEEEE
T ss_pred h------HHHHHHHHHHHCCCCeEEEEEEeeccccc-------------------cccHHHHHHHHHHH-cCCeeEE
Confidence 1 36788899999999999999876532111 01234566666665 8998877
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=166.32 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc-EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS-REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p~~ 270 (842)
...+++.|.+.+++.|++|+++++|++|..++++|.|++.+|+ ++.||.||+|+..+
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence 4689999999999999999999999999999999999999987 89999999999887
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-14 Score=150.62 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=101.6
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC---c-c---CCCccEE
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL---A-K---ANKYDRI 700 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~-~---~~~fD~i 700 (842)
++.+|||+|||+|.++..++++ ++.+|+|+|+|+.+++.|+++++.++++++++++++|+.+. + + +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 6789999999999999999887 57899999999999999999999999987899999997662 2 2 2689999
Q ss_pred EEcchhhhcCh-------------hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHH
Q 035870 701 ISCEMIEAVGH-------------EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLS 767 (842)
Q Consensus 701 ~s~~~~~~~~~-------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 767 (842)
+++..+++.+. +....++.+++++|||||.+.+........ . .......++ ....+..+...
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~-~-~~l~~~g~~---~~~~~~~~~~~ 219 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS-L-QLKKRLRWY---SCMLGKKCSLA 219 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH-H-HHGGGBSCE---EEEESSTTSHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH-H-hcccceEEE---EECCCChhHHH
Confidence 99977665431 112356788999999999887642111000 0 000011111 01113344557
Q ss_pred HHHHHHhhcCCcEEEEEEec
Q 035870 768 RITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 768 ~~~~~~~~~~gf~v~~~~~~ 787 (842)
++.+.+.+ +||+.+.+..+
T Consensus 220 ~~~~~l~~-~Gf~~v~~~~~ 238 (254)
T 2h00_A 220 PLKEELRI-QGVPKVTYTEF 238 (254)
T ss_dssp HHHHHHHH-TTCSEEEEEEE
T ss_pred HHHHHHHH-cCCCceEEEEE
Confidence 77777776 89976665543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=140.50 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=94.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
++++.+|||||||+|.++..+++....+|+++|+|+.+++.|+++... ..+++++++|+.+++ ++++||+|+++.+
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 116 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSASFDVVLEKGT 116 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSCEEEEEEESH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCcccEEEECcc
Confidence 368889999999999999999988323899999999999999998754 237999999999887 5689999999999
Q ss_pred hhhcC-------------hhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 706 IEAVG-------------HEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 706 ~~~~~-------------~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++++. .+....+++++.++|||||++++.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 98876 34578999999999999999999876543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-15 Score=153.84 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=93.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++.++++++++|+.+++++++||+|+++.+++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred cCCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 37889999999999999999997 79999999999999999999999998668999999998887668999999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.+. ....+.+++++|||||.+++.
T Consensus 156 ~~~~--~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPDY--ATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGGG--GGSSSBCTTTSCSSCHHHHHH
T ss_pred Ccch--hhhHHHHHHhhcCCcceeHHH
Confidence 8865 444777899999999997764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=150.33 Aligned_cols=131 Identities=13% Similarity=0.237 Sum_probs=104.9
Q ss_pred cccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 035870 599 SCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGL 677 (842)
Q Consensus 599 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l 677 (842)
..+.|.....+... +.+++.+...++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++.+++
T Consensus 198 ~pg~Fs~~~~d~~~------~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl 271 (375)
T 4dcm_A 198 HANVFSRTGLDIGA------RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 271 (375)
T ss_dssp CTTCTTCSSCCHHH------HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG
T ss_pred CCCcccCCcccHHH------HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC
Confidence 45566554433332 35677777778899999999999999999998 478999999999999999999999887
Q ss_pred CC--CeEEEEccccCCccCCCccEEEEcchhhh---cChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 678 QD--LIRLYLCDYRQLAKANKYDRIISCEMIEA---VGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 678 ~~--~v~~~~~d~~~~~~~~~fD~i~s~~~~~~---~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.+ +++++.+|+.+..++++||+|+++..+++ +++.....+++++.++|||||++++..
T Consensus 272 ~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 272 EALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp GGGGGEEEEECSTTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCceEEEEechhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 54 58889999887556679999999999875 334345688999999999999999954
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=136.50 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=96.0
Q ss_pred HHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 619 SLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 619 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
+.+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+|+++++.|++++...++.++++++++|+.+..
T Consensus 33 ~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 33 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 44555553 457889999999999999999887557999999999999999999999888778999999987743
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHH--HhccccCcEEEEEeecC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCC--ESLLAEDGLLVLQFISI 738 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~--~~~LkpgG~~~~~~~~~ 738 (842)
.+++||+|+++.+++.. .....++.+ .++|||||.+++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 15799999999885532 256777777 89999999999976554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-14 Score=139.57 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=90.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc---cCCC-ccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA---KANK-YDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~---~~~~-fD~i~s~ 703 (842)
++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++++.+++. ++++++++|+.+.. .+++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 67899999999999999988774469999999999999999999999884 58999999987754 2468 9999999
Q ss_pred chhhhcChhhHHHHHHHH--HhccccCcEEEEEeecC
Q 035870 704 EMIEAVGHEFMEEFFGCC--ESLLAEDGLLVLQFISI 738 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~--~~~LkpgG~~~~~~~~~ 738 (842)
..++ .+ ....+++.+ .++|||||.+++.....
T Consensus 133 ~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-FN--LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8854 33 378889998 67899999999976554
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=139.79 Aligned_cols=140 Identities=21% Similarity=0.183 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
.....+++.+.+.++.+|||||||+|.++..+++..+ .+|+++|+|+++++.|++++...++. ++++.++|.....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCG
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC
Confidence 3445677788888999999999999999999998843 79999999999999999999988876 6999999986543
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-ccchhhhcccCCCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-SSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~p~~~~~~ 765 (842)
..++||+|++..+++|+.+ ++.++|||||++++...... .....+.+ ...|..+++++....|.
T Consensus 143 ~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 207 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVGRYL-QRLVLAEKRGDEIIIKDCGPVAFVPL 207 (215)
T ss_dssp GGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEESSSS-EEEEEEEEETTEEEEEEEEEECCCBC
T ss_pred CCCCeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEECCCC-cEEEEEEEeCCEEEEEEeccEEEEec
Confidence 3578999999999999863 78999999999999765443 22222211 23455555555444443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=135.59 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=98.1
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-ccCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-AKANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~ 696 (842)
...+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.+++++.++|+.+. +..++
T Consensus 22 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHh-cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 345667778889999999999999999999988 4899999999999999999999998866899999998772 22268
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
||+|++..++++ +..+++++.++|+|||.+++...
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 999999887754 58899999999999999998654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=143.42 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=92.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-cC-----CCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-KA-----NKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~-----~~f 697 (842)
..++.+|||||||+|..+..+++. .+++|+++|+|+++++.|+++++..++.++++++++|+.+. + .. ++|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 346789999999999999999986 37899999999999999999999999987899999998653 2 11 689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|+|++....++..+ ...+++.+ ++|||||++++.++..+
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~~ 174 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIVP 174 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCCc
Confidence 99999887766533 45677777 99999999999766543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=138.81 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccC
Q 035870 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQ 690 (842)
Q Consensus 614 q~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~ 690 (842)
+.+.+..++...+.+++.+|||||||+|..+..+++. ++++|+++|+|+++++.|+++++..|+. ++++++++|+.+
T Consensus 41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 3455566666666666779999999999999999986 3789999999999999999999999997 799999999876
Q ss_pred Cc---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 691 LA---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 691 ~~---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.. .+++||+|++.... ..+..+++++.++|||||++++.++..
T Consensus 121 ~l~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 121 VMSRLANDSYQLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp HGGGSCTTCEEEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred HHHHhcCCCcCeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 53 25899999986532 336789999999999999999965543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=131.30 Aligned_cols=133 Identities=14% Similarity=0.223 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
..+.+++.+...++.+|||+|||+|.++..+++ .+.+|+++|+|+.+++.|+++++..+++ +++++++|+.+..++++
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 100 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAEDVLDKLE 100 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHHHGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccccccCCC
Confidence 345667777888899999999999999999998 5889999999999999999999999884 79999999887335579
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
||+|+++.+ .....+++++.++ |||.+++...... ...++.+.+.+
T Consensus 101 ~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~-------------------------~~~~~~~~l~~- 146 (183)
T 2yxd_A 101 FNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE-------------------------NAAKIINEFES- 146 (183)
T ss_dssp CSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH-------------------------HHHHHHHHHHH-
T ss_pred CcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc-------------------------cHHHHHHHHHH-
Confidence 999999887 2378999999999 9999999653211 13455566666
Q ss_pred CCcEEEEEE
Q 035870 777 SRLCVEQVE 785 (842)
Q Consensus 777 ~gf~v~~~~ 785 (842)
.||+++.++
T Consensus 147 ~g~~~~~~~ 155 (183)
T 2yxd_A 147 RGYNVDAVN 155 (183)
T ss_dssp TTCEEEEEE
T ss_pred cCCeEEEEE
Confidence 788877654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.5e-14 Score=152.10 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=121.2
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
....+++.+. ++++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++. .+++++.+|+.+ +..
T Consensus 196 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~ 266 (372)
T 1fp1_D 196 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVP 266 (372)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC
T ss_pred HHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCC
Confidence 3456777775 677899999999999999999988 5789999999 9999887642 369999999977 422
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccc----cCccchhhhcccCCCCCCCHHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEY----RLSSDFIKEYIFPGGCLPSLSRIT 770 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~p~~~~~~~~~~~ 770 (842)
. ||+|++..++||++++....++++++++|||||++++.+...+....... ....++.. ...+++...+..++.
T Consensus 267 ~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~t~~e~~ 344 (372)
T 1fp1_D 267 Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLM-FITVGGRERTEKQYE 344 (372)
T ss_dssp C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHH-HHHHSCCCEEHHHHH
T ss_pred C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHH-HhccCCccCCHHHHH
Confidence 3 99999999999999866679999999999999999998877655422110 00011110 113456677899998
Q ss_pred HHHhhcCCcEEEEEEe
Q 035870 771 SAMSVASRLCVEQVEN 786 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~ 786 (842)
+.+.+ +||+++++..
T Consensus 345 ~ll~~-aGf~~~~~~~ 359 (372)
T 1fp1_D 345 KLSKL-SGFSKFQVAC 359 (372)
T ss_dssp HHHHH-TTCSEEEEEE
T ss_pred HHHHH-CCCceEEEEE
Confidence 88887 8999888766
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=134.39 Aligned_cols=106 Identities=23% Similarity=0.208 Sum_probs=92.4
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
++++.+|||||||+|.+++.+++. +..+|+++|+|+.+++.|+++++.+|+.++|+++++|..+.. ++.+||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 468899999999999999999998 345899999999999999999999999989999999987766 334799999877
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|.-.+ ...++.+..+.|+++|+++++..
T Consensus 99 mGg~l----I~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 99 MGGRL----IADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp ECHHH----HHHHHHHTGGGGTTCCEEEEEES
T ss_pred CchHH----HHHHHHHHHHHhCcCCEEEEECC
Confidence 65543 77889999999999999999764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=141.76 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=89.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc----CCCccEEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK----ANKYDRII 701 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~----~~~fD~i~ 701 (842)
..++.+|||||||+|..++.++.. ++.+|+++|+|+.+++.|+++++..++. +|+++++|+.+++. .++||+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEE
Confidence 357889999999999999999987 6789999999999999999999999987 59999999988762 37999999
Q ss_pred EcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 702 SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 702 s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|..+ .+ +..+++.+.++|||||++++..
T Consensus 157 s~a~----~~--~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 157 ARAV----AP--LCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp EESS----CC--HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ECCc----CC--HHHHHHHHHHHcCCCeEEEEEe
Confidence 9753 33 6899999999999999998743
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=133.84 Aligned_cols=106 Identities=23% Similarity=0.234 Sum_probs=91.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc-CCccCCCccEEEEcc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR-QLAKANKYDRIISCE 704 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~~~~~fD~i~s~~ 704 (842)
++++.+|||||||+|.+++.+++. +..+|+++|+|+.+++.|+++++.+|+.++|+++++|.. .+++.++||+|+..+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 468899999999999999999998 356899999999999999999999999989999999975 454333799999877
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|.. +....++.+..+.|+|+|+++++..
T Consensus 93 ~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 93 MGG----RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp ECH----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred CCh----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 633 3368899999999999999999654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=141.45 Aligned_cols=116 Identities=14% Similarity=0.279 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
.++.+++.+. .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|+++++..+++ +++++++|+.+..+++
T Consensus 98 l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~ 175 (276)
T 2b3t_A 98 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQ 175 (276)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTC
T ss_pred HHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccC
Confidence 3455666665 67789999999999999999976 5789999999999999999999998886 7999999987754457
Q ss_pred CccEEEEcc-------------hhhhcCh----------hhHHHHHHHHHhccccCcEEEEE
Q 035870 696 KYDRIISCE-------------MIEAVGH----------EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 696 ~fD~i~s~~-------------~~~~~~~----------~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+||+|+++. +++|.+. +.+..+++++.++|||||++++.
T Consensus 176 ~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 899999984 3333321 34688999999999999999985
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=138.39 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~ 703 (842)
.++.+|||||||+|.++..+|+. ++.+|+|+|+|+.+++.|++++...+++ +++++++|+.+++ ++++||.|+++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 36779999999999999999988 6789999999999999999999998885 7999999998864 46789999987
Q ss_pred chhhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+.... ....+++++.++|||||.+++.+
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 543322211 13689999999999999999864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=141.50 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=94.3
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc---CCCccE
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK---ANKYDR 699 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~---~~~fD~ 699 (842)
.+...++.+|||||||+|..+..+++. ++.+|+++|+|+++++.|+++++..++.++++++++|+.+..+ +++||+
T Consensus 66 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 66 LIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp HHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred HHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccE
Confidence 333457889999999999999999985 4789999999999999999999999998899999999987643 589999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|++.... ..+..+++.+.++|||||++++..+..
T Consensus 146 V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 146 IFIDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp EEEETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred EEEcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 9986432 237889999999999999999966544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=147.85 Aligned_cols=114 Identities=25% Similarity=0.277 Sum_probs=96.1
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
+.+.+.+.+.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.++++++++|+.+++ ++++|
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 45555566778999999999999999999998435999999996 99999999999999789999999999987 55799
Q ss_pred cEEEEcchhhhcC-hhhHHHHHHHHHhccccCcEEEE
Q 035870 698 DRIISCEMIEAVG-HEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 698 D~i~s~~~~~~~~-~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
|+|++..+..++. ...+..+++++.++|||||+++.
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 9999987533332 22478899999999999999983
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=140.28 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-CccC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LAKA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~ 694 (842)
...+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+|+++++.|++++...+ +++++++|+.+ ++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccC
Confidence 44567788888899999999999999999999998 6899999999999999999987665 79999999887 3356
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++||+|++..+++|+.+ ++.++|||||++++......
T Consensus 133 ~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp CCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECSSS
T ss_pred CCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcCCC
Confidence 79999999999999864 58899999999999765443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=147.36 Aligned_cols=118 Identities=17% Similarity=0.311 Sum_probs=100.1
Q ss_pred HHHHHHHHHcC--CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..++.+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++. ++++++|+.+..
T Consensus 218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~ 294 (381)
T 3dmg_A 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALT 294 (381)
T ss_dssp HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSC
T ss_pred HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccc
Confidence 34445545442 347889999999999999999998 889999999999999999999998874 899999998887
Q ss_pred cCCCccEEEEcchhhh---cChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCEMIEA---VGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~---~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
++++||+|+++.++++ ...+....+++++.++|||||++++...
T Consensus 295 ~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 295 EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 4589999999999888 3345688999999999999999999643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=150.62 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=100.1
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++.+++.++++++++|+.+++..++||
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 131 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVD 131 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcce
Confidence 3455556678899999999999999999999833399999999 999999999999999888999999999988448999
Q ss_pred EEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEEee
Q 035870 699 RIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 699 ~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+|++..+.+++.. ..+..+++.+.++|||||.+++...
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 9999877666643 3478899999999999999987543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-14 Score=160.47 Aligned_cols=111 Identities=15% Similarity=0.253 Sum_probs=93.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~ 704 (842)
..+.+|||||||.|.++..+|+. |++|||||+|+.+++.|+..+.+.|.. +|+++++|++++. .+++||+|+|.+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35679999999999999999998 999999999999999999999887744 6999999999884 457999999999
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
|+||+++......+..+.+.|+++|..++..+....
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998743233355677778899888887765443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-14 Score=149.96 Aligned_cols=109 Identities=26% Similarity=0.293 Sum_probs=94.6
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEc
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISC 703 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~ 703 (842)
..+.++.+|||||||+|.++..+++.+..+|+|+|+| ++++.|+++++.+++.++++++++|+.+++ ++++||+|++.
T Consensus 62 ~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~ 140 (349)
T 3q7e_A 62 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE 140 (349)
T ss_dssp HHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred cccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence 3446789999999999999999999844599999999 599999999999999888999999999987 66899999998
Q ss_pred chhhhcC-hhhHHHHHHHHHhccccCcEEEEE
Q 035870 704 EMIEAVG-HEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 704 ~~~~~~~-~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+.+++. ...++.+++++.++|||||+++..
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 7755552 235889999999999999999853
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=149.18 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
...+++.|.+.+++.|++|+.+++|++|..+++++.|++.+| ++.||.||+|+..+. ..+++. ++ -.+.
T Consensus 148 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s-~~l~~~-l~--------~~p~ 216 (372)
T 2uzz_A 148 SELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV-KDLLPE-LP--------VQPV 216 (372)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG-GGTSTT-CC--------CEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH-Hhhccc-cC--------ceEE
Confidence 357889999999999999999999999999888899999888 599999999998774 234332 10 0011
Q ss_pred eeceEEEecCCCCcCCC-CCCcc------eeeecc-cCCCceEEEEEc-----cc---ccCC------CCCCCCeEEecC
Q 035870 294 VYSDIFLHRDKRFMPQN-PAAWS------AWNFLE-SFDSKVCLTYWL-----NV---LQNL------GETSLPFLVTLN 351 (842)
Q Consensus 294 ~~~~v~l~~~~~~~p~~-~~~~~------~~~~~~-~~~~~~~v~~~~-----~~---l~~l------~~~~~~~~~~l~ 351 (842)
....+++..+..+.... ...|. ...|.. .+++...+.... .. .... .+.+.+.+..+.
T Consensus 217 rg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 296 (372)
T 2uzz_A 217 RKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVL 296 (372)
T ss_dssp ECCEEEECCCGGGSTTTTCCEEEEECTTCCEEEEECCSSSCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHS
T ss_pred EEEEEEEEeccccCccccCCEEEEecCCCCeEEecCCCCCeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHC
Confidence 11111222111110000 00010 011211 123344443211 00 0000 001111222233
Q ss_pred CCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 352 PDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 352 ~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
|... .+...|...+| .+++..+.+...+..+|+|++.+|.+.|+ ..|..+|+.+|+.|++.+.+
T Consensus 297 P~l~--~~~~~~~g~r~----~t~d~~p~ig~~~~~~~l~~~~G~~g~G~-~~ap~~g~~la~~i~~~~~~ 360 (372)
T 2uzz_A 297 PGIG--CCLYGAACTYD----NSPDEDFIIDTLPGHDNTLLITGLSGHGF-KFASVLGEIAADFAQDKKSD 360 (372)
T ss_dssp CSCC--CEEEECCCEEE----ECTTSCCCEEEETTEEEEEEECCCCSCCG-GGHHHHHHHHHHHHTTCCCS
T ss_pred CCCC--ccceeeEEeec----cCCCCCeEEecCCCCCCEEEEeCCCccch-hccHHHHHHHHHHHhCCCCC
Confidence 3322 23445533222 11222233333444579999999999999 89999999999999987643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=137.60 Aligned_cols=169 Identities=11% Similarity=0.009 Sum_probs=119.6
Q ss_pred cHHHHHHHHHHHHHHHcCCC-CCCeEEEeccCc--hHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE
Q 035870 609 DLKAAQMRKVSLLIEKARVS-KGQEVLEIGCGW--GTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL 683 (842)
Q Consensus 609 ~l~~aq~~~~~~l~~~l~~~-~~~~vLDiGcG~--G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~ 683 (842)
.+..+.+.++.+.++.+... ...+|||||||+ +..+..++++ ++++|+++|.|+.|++.|++++...+ ..++++
T Consensus 57 ~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~ 135 (277)
T 3giw_A 57 VHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAY 135 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEE
T ss_pred HHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEE
Confidence 45566677778887777533 446899999997 4455666654 78999999999999999999986543 247999
Q ss_pred EEccccCCc-----c--CCCcc-----EEEEcchhhhcChhh-HHHHHHHHHhccccCcEEEEEeecCCCcccccccCcc
Q 035870 684 YLCDYRQLA-----K--ANKYD-----RIISCEMIEAVGHEF-MEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSS 750 (842)
Q Consensus 684 ~~~d~~~~~-----~--~~~fD-----~i~s~~~~~~~~~~~-~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 750 (842)
+++|+++.. + .+.|| .|+++.++||++++. +..+++++.+.|+|||+|++...+.+... +......
T Consensus 136 v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p-~~~~~~~ 214 (277)
T 3giw_A 136 VEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP-QEVGRVA 214 (277)
T ss_dssp EECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH-HHHHHHH
T ss_pred EEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH-HHHHHHH
Confidence 999998863 1 35566 699999999999865 68999999999999999999887755321 1111111
Q ss_pred chhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 751 DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 751 ~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
...+.--.| ..+.+.+++...+ .||++++
T Consensus 215 ~~~~~~g~p-~~~rs~~ei~~~f---~Glelve 243 (277)
T 3giw_A 215 REYAARNMP-MRLRTHAEAEEFF---EGLELVE 243 (277)
T ss_dssp HHHHHTTCC-CCCCCHHHHHHTT---TTSEECT
T ss_pred HHHHhcCCC-CccCCHHHHHHHh---CCCcccC
Confidence 111111112 2456788887655 3898643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=148.96 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHH-------HHHHHHcCCC-CCeEEEEc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYA-------EMKVKEAGLQ-DLIRLYLC 686 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a-------~~~~~~~~l~-~~v~~~~~ 686 (842)
..+..+++.+.++++.+|||||||+|.++..+|+..+ .+|+|+|+|+.+++.| +++++..|+. ++++++++
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 4556788888999999999999999999999999744 5899999999999999 8999888853 58999998
Q ss_pred cccCC----c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 687 DYRQL----A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 687 d~~~~----~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
|.... + ..++||+|+++..+ +. ..+...++++.+.|||||++++.....+
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred CccccccccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 64422 1 24789999997665 22 3478889999999999999999754433
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-13 Score=145.89 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCC--cEEeCCEEEEccChHHHHHhhcCC--CChHHHHhc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDG--SREFYNSCVMALHAPDALKILGNQ--ATFDETRIL 288 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G--~~~~ad~VV~A~p~~~~~~ll~~~--~~~~~~~~l 288 (842)
...+++.|.+.++++|++|+++++|++|..++++ +.|++.+| .++.||.||+|+..+. ..++... .+..
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s-~~l~~~~~g~~~~----- 222 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA-PGLARRIEGIPRD----- 222 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH-HHHHHTEETSCGG-----
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch-HHHHHHhcCCCcc-----
Confidence 4689999999999999999999999999998776 88999888 4799999999998773 2333210 1100
Q ss_pred cccceeeceE-EEecCCCCcCCCCCCcc-------eeeecccCCCceEEEEEc---ccc-cCCCC----CCCCeEEecCC
Q 035870 289 GAFQYVYSDI-FLHRDKRFMPQNPAAWS-------AWNFLESFDSKVCLTYWL---NVL-QNLGE----TSLPFLVTLNP 352 (842)
Q Consensus 289 ~~~~~~~~~v-~l~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~v~~~~---~~l-~~l~~----~~~~~~~~l~~ 352 (842)
...+..+.+- ++.++.+ .|.....+. ...+....++...+.... +.. ..... .+.+....+.|
T Consensus 223 ~~~~i~p~rG~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~g~~~iG~t~e~~~~~~~~~~~~~~~~l~~~~~~~~P 301 (369)
T 3dme_A 223 SIPPEYLCKGSYFTLAGR-APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWP 301 (369)
T ss_dssp GSCCCEEEEEEEEECSSS-CSCSSEEEECTTCSSCCCCEEECTTSCEEECCCCEEESSCCCCCCGGGGGGHHHHHHTTCT
T ss_pred ccceeeecceEEEEECCC-CccCceeecCCCCCCceEEEeCccCCcEEECCCcccccccccccCHHHHHHHHHHHHHHCC
Confidence 0011112111 1222221 010000000 000100112222221100 100 00000 01111223444
Q ss_pred CCCCcceeEEEEcCCCCCC-HHHHHHHHhh-hh-hcCCCCeEEeccccCCCCCchhHhHHHHHHHHh
Q 035870 353 DHVPEHTLLKWSTGHPVPS-VAASKASLEL-DH-IQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGV 416 (842)
Q Consensus 353 ~~~~~~~~~~w~~~~p~~~-~~~~~~~~~~-~~-~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~I 416 (842)
......+...|...+|... ++..+..+.+ .. .+..+|+|++.++.+.|+ ..|...|+.+|+.|
T Consensus 302 ~l~~~~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~~~l~~~~G~~~~G~-t~ap~~a~~~a~~i 367 (369)
T 3dme_A 302 ALPDGALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGL-TASLAIAEETLARL 367 (369)
T ss_dssp TCCTTCCEEEEEEEEEESSCTTSCCCCCEEECHHHHCCTTEEEEECCCTTHH-HHHHHHHHHHHHHH
T ss_pred CCChhhceecceeccccccCCCCCcCCeEEecccccCCCCEEEEeCCCCchH-hccHHHHHHHHHHh
Confidence 4444456677877665421 1111112222 22 245689999999999999 89999999999987
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=142.02 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCC---------
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEA---GLQDL--------- 680 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~---~l~~~--------- 680 (842)
..++.+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++... ++.++
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 34455666655556789999999999999999986 3679999999999999999988765 44322
Q ss_pred ----------------eE-------------EEEccccCCc------cCCCccEEEEcchhhhcCh-------hhHHHHH
Q 035870 681 ----------------IR-------------LYLCDYRQLA------KANKYDRIISCEMIEAVGH-------EFMEEFF 718 (842)
Q Consensus 681 ----------------v~-------------~~~~d~~~~~------~~~~fD~i~s~~~~~~~~~-------~~~~~~~ 718 (842)
++ ++++|+.+.. ...+||+|+++..+.+..+ +.+..++
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 66 9999987754 2348999999987766543 4567999
Q ss_pred HHHHhccccCcEEEEEe
Q 035870 719 GCCESLLAEDGLLVLQF 735 (842)
Q Consensus 719 ~~~~~~LkpgG~~~~~~ 735 (842)
+++.++|||||++++..
T Consensus 198 ~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 198 RSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhcCCCcEEEEeC
Confidence 99999999999999843
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=135.59 Aligned_cols=107 Identities=23% Similarity=0.337 Sum_probs=90.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~ 703 (842)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++ ++++++++|+.+++ ++++||.|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 46789999999999999999988 578999999999999999999999888 48999999998865 45789999998
Q ss_pred chhhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 704 EMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....+.... ....+++++.++|||||.+++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 764432211 13689999999999999999853
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=133.89 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=91.8
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCE 704 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~ 704 (842)
++++.+|||||||+|.+++.+++. +..+|+++|+|+.+++.|+++++.+|+.++|+++++|..+.. ++.+||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 468899999999999999999998 345899999999999999999999999888999999987765 333699999876
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|.-. ....++.+..+.|+++|+++++..
T Consensus 99 mGg~----lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 99 MGGT----LIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp ECHH----HHHHHHHHTGGGGTTCCEEEEEES
T ss_pred CchH----HHHHHHHHHHHHhCCCCEEEEEcC
Confidence 6443 377889999999999999999764
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-13 Score=131.69 Aligned_cols=146 Identities=15% Similarity=0.083 Sum_probs=100.1
Q ss_pred HHHHHc---CCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 620 LLIEKA---RVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 620 ~l~~~l---~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.++..+ .+++|++|||+|||+|.++.++|+. +..+|+++|+|+.|++...+..+.. .++.++++|++...
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~ 140 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSY 140 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhh
Confidence 444444 4889999999999999999999987 4579999999999986665555443 38999999987643
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHH
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRIT 770 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~ 770 (842)
..++||+|++.... ++ ....+...++++|||||++++..-....+. -+.|.. ...+..
T Consensus 141 ~~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~-------------t~~~~e---~~~~~~ 200 (232)
T 3id6_C 141 KSVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDV-------------TKDPKE---IYKTEV 200 (232)
T ss_dssp TTTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC--------------------CCSSS---STTHHH
T ss_pred hccccceEEEEecCCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCccc-------------CCCHHH---HHHHHH
Confidence 23689999998543 22 234455667779999999999632211000 000110 113444
Q ss_pred HHHhhcCCcEEEEEEecCc
Q 035870 771 SAMSVASRLCVEQVENIGI 789 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~~~~ 789 (842)
+.+.+ .||++.+..++.+
T Consensus 201 ~~L~~-~gf~~~~~~~l~p 218 (232)
T 3id6_C 201 EKLEN-SNFETIQIINLDP 218 (232)
T ss_dssp HHHHH-TTEEEEEEEECTT
T ss_pred HHHHH-CCCEEEEEeccCC
Confidence 56665 7999999887743
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-13 Score=146.39 Aligned_cols=190 Identities=11% Similarity=0.037 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhcccccee
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYV 294 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~ 294 (842)
..+.+.|.+.+++.|++|+++++|++|..++++|.|++.+| ++.||.||+|++.+.. .+++. .. ..++..
T Consensus 164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~-~~-------~~~~~~ 233 (382)
T 1ryi_A 164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQ-LG-------LNNAFL 233 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHH-TT-------CCCCCE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHH-HHHHh-cC-------CCCcee
Confidence 57899999999999999999999999999888898888887 8999999999987632 22211 00 011222
Q ss_pred ec---eEEEecCCCCcCCCCCCcceeeecc-cCCCceEEEEEcc--ccc-CCCC----CCCCeEEecCCCCCCcceeEEE
Q 035870 295 YS---DIFLHRDKRFMPQNPAAWSAWNFLE-SFDSKVCLTYWLN--VLQ-NLGE----TSLPFLVTLNPDHVPEHTLLKW 363 (842)
Q Consensus 295 ~~---~v~l~~~~~~~p~~~~~~~~~~~~~-~~~~~~~v~~~~~--~l~-~l~~----~~~~~~~~l~~~~~~~~~~~~w 363 (842)
+. .+.+......+ ....+....|.. .+++...+..... ... .... .+.+.+..+.|......+...|
T Consensus 234 ~~~g~~~~~~~~~~~~--~~~~~~~~~~~~p~~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w 311 (382)
T 1ryi_A 234 PVKGECLSVWNDDIPL--TKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFW 311 (382)
T ss_dssp EEEEEEEEEECCSSCC--CSEEEETTEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEEE
T ss_pred ccceEEEEECCCCCCc--cceEEcCCEEEEEcCCCeEEEeecccccCCCCCCCHHHHHHHHHHHHHhCCCcCCCceeeEE
Confidence 21 11222111111 111111111211 1233343332111 000 0000 0011112233332222355667
Q ss_pred EcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCcc
Q 035870 364 STGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSC 421 (842)
Q Consensus 364 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~ 421 (842)
...+|.-. +..+.+...+..+|+|+++++.|.|+ ..|..+|+.+|+.|++...
T Consensus 312 ~g~~~~t~----d~~p~ig~~~~~~~l~~~~G~~g~G~-~~a~~~g~~la~~i~~~~~ 364 (382)
T 1ryi_A 312 AGLRPGTK----DGKPYIGRHPEDSRILFAAGHFRNGI-LLAPATGALISDLIMNKEV 364 (382)
T ss_dssp EEEEEECS----SSCCEEEEETTEEEEEEEECCSSCTT-TTHHHHHHHHHHHHTTCCC
T ss_pred EEecccCC----CCCcEeccCCCcCCEEEEEcCCcchH-HHhHHHHHHHHHHHhCCCC
Confidence 55433211 11122222333579999999999999 8999999999999998763
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=141.83 Aligned_cols=110 Identities=19% Similarity=0.267 Sum_probs=91.6
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccccCCccCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~~~~ 695 (842)
..+++.+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.. |. ++++++++|+.+..+++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQ 178 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCC
Confidence 46677788899999999999999999999987 4789999999999999999999887 75 48999999998844567
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|++ ++++ ...+++++.++|||||++++.+.
T Consensus 179 ~fD~Vi~-----~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 179 MYDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CEEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEES
T ss_pred CccEEEE-----cCcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999998 4544 57899999999999999999653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=134.88 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=88.5
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-cCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-KANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~~~fD~i~s~~~~ 706 (842)
++.+|||+|||+|.++..++++...+|+++|+|+++++.|+++++.+++ ++++++++|+.+. + ..++||+|+++..+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 6789999999999999998877335999999999999999999999988 5899999998774 3 45789999998874
Q ss_pred hhcChhhHHHHHHHHHh--ccccCcEEEEEeec
Q 035870 707 EAVGHEFMEEFFGCCES--LLAEDGLLVLQFIS 737 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~--~LkpgG~~~~~~~~ 737 (842)
+ .+ ....+++.+.+ +|||||++++....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4 33 36778888865 59999999987654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=137.99 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=99.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-cCCc-c-CCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY-RQLA-K-ANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~-~~~~-~-~~~fD~i~s~~ 704 (842)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ..+++++++|+ ..++ + +++||+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 67899999999999999999998 88999999999999999988 13799999999 4565 4 68999999972
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
.+..+++++.++|||||+++.. . ...+..++.+.+.+ +||.+..+
T Consensus 120 --------~~~~~l~~~~~~LkpgG~l~~~--~------------------------~~~~~~~~~~~l~~-~Gf~~~~~ 164 (226)
T 3m33_A 120 --------GPTSVILRLPELAAPDAHFLYV--G------------------------PRLNVPEVPERLAA-VGWDIVAE 164 (226)
T ss_dssp --------CCSGGGGGHHHHEEEEEEEEEE--E------------------------SSSCCTHHHHHHHH-TTCEEEEE
T ss_pred --------CHHHHHHHHHHHcCCCcEEEEe--C------------------------CcCCHHHHHHHHHH-CCCeEEEE
Confidence 2578899999999999999910 0 01134456666666 89998776
Q ss_pred EecCcc-HHHHHHHHH
Q 035870 785 ENIGIH-YYQTLRCWR 799 (842)
Q Consensus 785 ~~~~~~-y~~tl~~w~ 799 (842)
...... +.++...|.
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (226)
T 3m33_A 165 DHVSVLAHAPTWEDWQ 180 (226)
T ss_dssp EEEEEEEEECSHHHHH
T ss_pred EeeeecccCcCHHHHh
Confidence 654321 123445553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=138.20 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=87.7
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC----CccCCC
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ----LAKANK 696 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~----~~~~~~ 696 (842)
++.+.++++.+|||+|||+|.++..+++.. ..+|+|+|+|+++++.|+++++.. +++.++++|+.+ .+..++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~ 143 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCcc
Confidence 555667889999999999999999999983 479999999999999999987654 489999999987 553378
Q ss_pred ccEEEEcchhhhcCh-hhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAVGH-EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~~~-~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|+. ++++ +....+++++.++|||||++++.
T Consensus 144 ~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 144 VDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 999993 3433 22477899999999999999996
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=147.24 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
..+|++|||||||+|.++..+|+....+|++||.|+ +++.|++.++.+|+.++|+++.+|++++..+++||+|||..+-
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence 347889999999999999999987445899999996 8999999999999999999999999998855799999996654
Q ss_pred hhcChh-hHHHHHHHHHhccccCcEEEEE
Q 035870 707 EAVGHE-FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ~~~~~~-~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+..+ .++.++....++|||||.++-.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 444333 5889999999999999998753
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-13 Score=144.67 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChHH--HHHhhcCCCChHHHHhccc
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAPD--ALKILGNQATFDETRILGA 290 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~~--~~~ll~~~~~~~~~~~l~~ 290 (842)
...+++.|.+.+++.|++|+++++|++|..++++|. |++.+| ++.||.||+|+..+. +.+.+.... .
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~---------~ 217 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKT---------K 217 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCS---------C
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCc---------C
Confidence 467889999999999999999999999999988887 888888 899999999998764 222222110 0
Q ss_pred cceeeceE-EEecCCC-CcCCCCCCcc---eeeecc-cCCCceEEEE-EcccccCCCCC--------CCCeEEecCCCCC
Q 035870 291 FQYVYSDI-FLHRDKR-FMPQNPAAWS---AWNFLE-SFDSKVCLTY-WLNVLQNLGET--------SLPFLVTLNPDHV 355 (842)
Q Consensus 291 ~~~~~~~v-~l~~~~~-~~p~~~~~~~---~~~~~~-~~~~~~~v~~-~~~~l~~l~~~--------~~~~~~~l~~~~~ 355 (842)
++..+.+. ++.++.. -+......+. ...|.. .+++ ..+.. ........... +.+.+..+.|...
T Consensus 218 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g-~~iG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~ 296 (382)
T 1y56_B 218 IPIEPYKHQAVITQPIKRGTINPMVISFKYGHAYLTQTFHG-GIIGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPALK 296 (382)
T ss_dssp CCCEEEEEEEEEECCCSTTSSCSEEEESTTTTEEEECCSSS-CCEEECSCCBSSCCCCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred cCCCeeEeEEEEEccCCcccCCCeEEecCCCeEEEEEeCCe-EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 12222111 1112211 0001011110 011111 1223 33332 11100010000 0111122233322
Q ss_pred CcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 356 PEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 356 ~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
...+...|...+|.- .+..+.+...+..+|+|++.+|.|.|+ ..|..+|+.+|+.|++..
T Consensus 297 ~~~~~~~~~g~r~~t----~d~~p~ig~~~~~~~~~~~~G~~g~G~-~~a~~~g~~la~~i~~~~ 356 (382)
T 1y56_B 297 NLLILRTWAGYYAKT----PDSNPAIGRIEELNDYYIAAGFSGHGF-MMAPAVGEMVAELITKGK 356 (382)
T ss_dssp GSEEEEEEEEEEEEC----TTSCCEEEEESSSBTEEEEECCTTCHH-HHHHHHHHHHHHHHHHSS
T ss_pred CCCceEEEEeccccC----CCCCcEeccCCCCCCEEEEEecCcchH-hhhHHHHHHHHHHHhCCC
Confidence 333556776544421 122233333444689999999999999 899999999999999876
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=128.66 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=95.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. ..+++++++|+.+..++++||+|+++..++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 56779999999999999999988 5 99999999999987 237899999998854558999999999888
Q ss_pred hcChh-------hHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcE
Q 035870 708 AVGHE-------FMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC 780 (842)
Q Consensus 708 ~~~~~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~ 780 (842)
+.++. ....+++++.+.| |||++++..... ....++.+.+.+ +||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-------------------------~~~~~l~~~l~~-~gf~ 142 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-------------------------NRPKEVLARLEE-RGYG 142 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------------GCHHHHHHHHHH-TTCE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-------------------------CCHHHHHHHHHH-CCCc
Confidence 65432 3467788888888 999999865332 134566666666 7998
Q ss_pred EEEEEe
Q 035870 781 VEQVEN 786 (842)
Q Consensus 781 v~~~~~ 786 (842)
+..+..
T Consensus 143 ~~~~~~ 148 (170)
T 3q87_B 143 TRILKV 148 (170)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 877655
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=137.34 Aligned_cols=114 Identities=23% Similarity=0.270 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc-CCccC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR-QLAKA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~~~ 694 (842)
.....+++.+.+.++.+|||||||+|.++..+++..+.+|+++|+|+++++.|++++...++. +++++.+|.. .++..
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCC
Confidence 344567777888899999999999999999999984489999999999999999999998886 5999999973 33344
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
++||+|++..+++++.+ ++.++|||||++++.....
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEecC
Confidence 56999999999988864 5789999999999976544
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-13 Score=138.33 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=97.7
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...++..+.++++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++..+++++++++++|+.+..+++
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 346778888999999999999999999999988 378999999999999999999999999877999999998766667
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+||+|++. .++ ...+++++.++|||||++++..
T Consensus 162 ~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 162 NVDHVILD-----LPQ--PERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp SEEEEEEC-----SSC--GGGGHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEEC-----CCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 89999984 333 4678999999999999999854
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=131.28 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c--CCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K--ANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~--~~~fD~i~s 702 (842)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...++ +++++++|+.+.. + .++||+|++
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 37889999999999999999998 67799999999999999999998887 7999999987742 1 348999999
Q ss_pred cchhhhcChhhHHHHHHHHH--hccccCcEEEEEeecCC
Q 035870 703 CEMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFISIP 739 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~~~~ 739 (842)
+.+++ .. .+..++.+. ++|||||.+++......
T Consensus 117 ~~~~~--~~--~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 117 APPYA--MD--LAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CCCTT--SC--TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCCCc--hh--HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 98765 22 456666666 99999999999776544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=144.36 Aligned_cols=113 Identities=26% Similarity=0.324 Sum_probs=95.6
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCcc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYD 698 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD 698 (842)
.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++.+++.++++++++|+.+++ ++++||
T Consensus 29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 107 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEE
T ss_pred HHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCccc
Confidence 344444556788999999999999999998844599999999 699999999999999889999999999987 557999
Q ss_pred EEEEcchhhhcC-hhhHHHHHHHHHhccccCcEEEE
Q 035870 699 RIISCEMIEAVG-HEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 699 ~i~s~~~~~~~~-~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
+|++..+.+++. ...+..++.++.++|||||+++.
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 999987655543 23478899999999999999984
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-13 Score=136.90 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=92.6
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c---cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A---KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~~~~fD~i 700 (842)
..++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..++.++|+++++|+.+. + ..++||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 456789999999999999999987 3 6899999999999999999999999988999999998763 2 23589999
Q ss_pred EEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 701 ISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 701 ~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++... ......+++++.++|||||++++.++...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 98653 33468899999999999999999776543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=136.89 Aligned_cols=112 Identities=22% Similarity=0.304 Sum_probs=95.8
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-c--CC
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-K--AN 695 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~--~~ 695 (842)
+...+...++.+|||||||+|..+..+++. ++.+|+++|+|+++++.|+++++..++.++++++++|+.+. + . ++
T Consensus 46 l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 125 (233)
T 2gpy_A 46 LLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYP 125 (233)
T ss_dssp HHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSC
T ss_pred HHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCC
Confidence 333444457889999999999999999988 47899999999999999999999999877899999999885 3 2 57
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+||+|++....+ .+..+++++.++|||||++++.++.
T Consensus 126 ~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 126 LFDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp CEEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 899999977643 3789999999999999999997654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=136.60 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=92.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc------CCCcc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK------ANKYD 698 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~------~~~fD 698 (842)
..++.+|||||||+|..+..+++. + +++|+++|+|+++++.|++++...++.++++++++|+.+..+ .++||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 356789999999999999999988 3 689999999999999999999999998889999999876431 26799
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+|++.... .....+++++.++|||||.+++.++...
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99987652 2368999999999999999998766543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=132.29 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=83.7
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC----ccCCCccE
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL----AKANKYDR 699 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~~~~fD~ 699 (842)
+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+.++++.. .++.++++|+.+. +..++||+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeE
Confidence 567889999999999999999999873 469999999999988777766654 3789999998774 33378999
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+++. .. .+....++++++++|||||++++..
T Consensus 130 V~~~~-~~---~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 130 IYQDI-AQ---KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEECC-CS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEec-cC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99973 11 1234566999999999999999963
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=140.55 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCCeEEEEccccCCc----
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE---AGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~---~~l~~~v~~~~~d~~~~~---- 692 (842)
+...+...++.+|||+|||+|.++..++++ ++.+|+|+|+|+++++.|++++.. +++.++++++++|+.+..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV 107 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence 344556678889999999999999999998 467999999999999999999988 888778999999998872
Q ss_pred ----cCCCccEEEEcchhhhc----------------ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 ----KANKYDRIISCEMIEAV----------------GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 ----~~~~fD~i~s~~~~~~~----------------~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++++||+|+++..+... ....+..+++.+.++|||||++++..
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 35789999998554332 22347889999999999999999843
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=134.38 Aligned_cols=99 Identities=16% Similarity=0.302 Sum_probs=88.5
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...+++ +++++++|+.+.++.++||+|+++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc--
Confidence 4789999999999999999987 5789999999999999999999998886 49999999988875679999998642
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
. .+..+++++.++|||||.+++.
T Consensus 142 --~--~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 --A--SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp --S--SHHHHHHHHTTSEEEEEEEEEE
T ss_pred --C--CHHHHHHHHHHhcCCCcEEEEE
Confidence 2 3789999999999999999986
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=135.55 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccccCCc-cC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA-GLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~l~~~v~~~~~d~~~~~-~~ 694 (842)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.. | .+++++.++|+.+.+ ++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC
Confidence 46778888899999999999999999999987 3689999999999999999999887 7 458999999998885 55
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++||+|++. .++ ...+++++.++|||||++++..
T Consensus 165 ~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 165 AAYDGVALD-----LME--PWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp TCEEEEEEE-----SSC--GGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEEC-----CcC--HHHHHHHHHHhCCCCCEEEEEe
Confidence 789999983 333 4688999999999999999965
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=144.01 Aligned_cols=186 Identities=13% Similarity=0.175 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHH--HHHhhcCCCChHHHHhcccc
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPD--ALKILGNQATFDETRILGAF 291 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~--~~~ll~~~~~~~~~~~l~~~ 291 (842)
..+++.|.+.+++.|++|+++++|++|..++++ +.|++.+| ++.||.||+|+..+. +.+.+... +
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~-----------~ 241 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFE-----------L 241 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCC-----------C
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCC-----------C
Confidence 478999999999999999999999999998776 57888888 799999999998754 22322211 1
Q ss_pred ceeec---eEEEecCCCCcCCCCCCcc--eeeecc-cCCCceEEEEEcccccCCCCC--------CCCeEEecCCCCCCc
Q 035870 292 QYVYS---DIFLHRDKRFMPQNPAAWS--AWNFLE-SFDSKVCLTYWLNVLQNLGET--------SLPFLVTLNPDHVPE 357 (842)
Q Consensus 292 ~~~~~---~v~l~~~~~~~p~~~~~~~--~~~~~~-~~~~~~~v~~~~~~l~~l~~~--------~~~~~~~l~~~~~~~ 357 (842)
+..+. .++..-....++ ...+. ...|.. .+++...+............. +.+.+..+.|.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~ 319 (405)
T 2gag_B 242 PIQSHPLQALVSELFEPVHP--TVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARA 319 (405)
T ss_dssp CEEEEEEEEEEEEEBCSCCC--SEEEETTTTEEEEECTTSEEEEEEEECSSCCCSSCCCTHHHHHHHHHHHHHCGGGGGC
T ss_pred CccccceeEEEecCCccccC--ceEEeCCCcEEEEEcCCCcEEEEeccCCCCccccCCCHHHHHHHHHHHHHhCCccccC
Confidence 11111 111110011010 00000 011111 134444444332211111000 011112223332222
Q ss_pred ceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCc
Q 035870 358 HTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKS 420 (842)
Q Consensus 358 ~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~ 420 (842)
.+...|...+|. +.+..+.+.... .+|+|++.++.|.|+ ..|...|+.+|+.|++..
T Consensus 320 ~~~~~w~g~~~~----t~d~~p~ig~~~-~~~l~~~~G~~g~G~-~~a~~~g~~la~~i~g~~ 376 (405)
T 2gag_B 320 HVLRTWGGIVDT----TMDASPIISKTP-IQNLYVNCGWGTGGF-KGTPGAGFTLAHTIANDE 376 (405)
T ss_dssp EECEEEEEEEEE----ETTSCCEEEECS-SBTEEEEECCGGGCS-TTHHHHHHHHHHHHHHTS
T ss_pred CcceEEeecccc----CCCCCCEecccC-CCCEEEEecCCCchh-hHHHHHHHHHHHHHhCCC
Confidence 345566554332 111122222222 579999999999999 899999999999999765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=144.46 Aligned_cols=149 Identities=10% Similarity=0.061 Sum_probs=113.3
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
.++++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++. .+++++.+|+.+..+ .||+|++..
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p--~~D~v~~~~ 254 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTSIP--NADAVLLKY 254 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTCCC--CCSEEEEES
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCCCC--CccEEEeeh
Confidence 3457789999999999999999988 6789999999 9999888752 269999999866223 399999999
Q ss_pred hhhhcChhhHHHHHHHHHhcccc---CcEEEEEeecCCCcccc----cccCccchhhhcccCCCCCCCHHHHHHHHhhcC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAE---DGLLVLQFISIPDERYN----EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVAS 777 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~Lkp---gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 777 (842)
++||++++....++++++++||| ||++++.+...++.... ......++.. ..+. +...+..++.+.+.+ +
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~-g~~~t~~e~~~ll~~-a 331 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM-ACLN-GKERNEEEWKKLFIE-A 331 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG-GGGT-CCCEEHHHHHHHHHH-T
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH-Hhcc-CCCCCHHHHHHHHHH-C
Confidence 99999986667999999999999 99999988776543211 0000011111 1122 556688999888887 8
Q ss_pred CcEEEEEEec
Q 035870 778 RLCVEQVENI 787 (842)
Q Consensus 778 gf~v~~~~~~ 787 (842)
||++.++...
T Consensus 332 Gf~~~~~~~~ 341 (352)
T 1fp2_A 332 GFQHYKISPL 341 (352)
T ss_dssp TCCEEEEEEE
T ss_pred CCCeeEEEec
Confidence 9998877653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-13 Score=135.37 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=88.5
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC---c-cCC
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL---A-KAN 695 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~-~~~ 695 (842)
++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+.++++.. .+++++++|+.+. + .++
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence 345667889999999999999999999983 479999999999999888888775 3899999999873 3 457
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+||+|++... ..+....++.++.++|||||++++..
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8999999655 22234667889999999999999953
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=135.93 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=92.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC----CCcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA----NKYD 698 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~----~~fD 698 (842)
.++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..++.++++++++|+.+.. .. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999987 3 68999999999999999999999999888999999986643 11 7899
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+|++... ...+..+++++.++|||||++++.++..+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9997653 23478899999999999999999776544
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-13 Score=135.14 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=92.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+++|++|||+|||+|.+++.+|+...++|+++|+|+.+++.++++++.+++.++++++++|.++++..+.||.|+++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 46899999999999999999999855799999999999999999999999999999999999999877899999987542
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
. ...++..+.++|||||.+.++.+..
T Consensus 203 ~------~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 203 R------THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c------HHHHHHHHHHHcCCCCEEEEEeeec
Confidence 2 2356667778999999998876653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=134.74 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=104.2
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcC-CHHHHHHHHHHH-----HHcCCC----CCeEEEEc
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITL-SEEQLKYAEMKV-----KEAGLQ----DLIRLYLC 686 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~-s~~~~~~a~~~~-----~~~~l~----~~v~~~~~ 686 (842)
.+.+.+.....++.+|||||||+|.+++.+++. +. +|+++|+ |+++++.|++++ +.+++. ++++++..
T Consensus 68 ~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~ 146 (281)
T 3bzb_A 68 ADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY 146 (281)
T ss_dssp HHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred HHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence 344555455567889999999999999999987 55 9999999 899999999999 555654 47888877
Q ss_pred cccCCc-------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccc---c--CcEEEEEeecCCCcccccccCccchhh
Q 035870 687 DYRQLA-------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA---E--DGLLVLQFISIPDERYNEYRLSSDFIK 754 (842)
Q Consensus 687 d~~~~~-------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lk---p--gG~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (842)
|..+.. .+++||+|++..+++|.++ ...+++.+.++|| | ||++++........ +
T Consensus 147 ~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~-----------~- 212 (281)
T 3bzb_A 147 RWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVTFTHHRPH-----------L- 212 (281)
T ss_dssp CTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------------
T ss_pred cCCCccHHHHhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc-----------c-
Confidence 755431 2478999999999998755 8999999999999 9 99987742221100 0
Q ss_pred hcccCCCCCCCHHHHHHHHhhcCC-cEEEEEEec
Q 035870 755 EYIFPGGCLPSLSRITSAMSVASR-LCVEQVENI 787 (842)
Q Consensus 755 ~~i~p~~~~~~~~~~~~~~~~~~g-f~v~~~~~~ 787 (842)
.....++.+.+.+ .| |+++.+...
T Consensus 213 --------~~~~~~~~~~l~~-~G~f~v~~~~~~ 237 (281)
T 3bzb_A 213 --------AERDLAFFRLVNA-DGALIAEPWLSP 237 (281)
T ss_dssp -----------CTHHHHHHHH-STTEEEEEEECC
T ss_pred --------chhHHHHHHHHHh-cCCEEEEEeccc
Confidence 0112345555565 79 999887653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-13 Score=143.34 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=97.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
+.+++.+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..+++. ++++.+|..+.. +++|
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~f 262 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KGRF 262 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CSCE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cCCe
Confidence 45667776667789999999999999999988 4579999999999999999999988874 678899987664 5789
Q ss_pred cEEEEcchhhhc---ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 698 DRIISCEMIEAV---GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 698 D~i~s~~~~~~~---~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+|+++.++++. ..+....+++++.++|||||.+++....
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999988762 3345789999999999999999996543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=138.62 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=96.9
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.+...+.++++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+. +++++++|+.+++ .+++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCC
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccccccc
Confidence 34456678899999999999999999999873 479999999999999999999999986 7999999998876 4578
Q ss_pred ccEEEEcc------hhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 697 YDRIISCE------MIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 697 fD~i~s~~------~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
||+|++.. ++.+.++ +....+++++.++|||||++++.+++..
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 99999853 2333221 1126889999999999999999877643
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=143.41 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+.+.|.+.+++.|++|+++++|++|..++++|.|++.+| ++.||.||+|+..+.
T Consensus 152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 152 VRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh
Confidence 357888999999889999999999999999888899988777 799999999998763
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-13 Score=134.73 Aligned_cols=108 Identities=15% Similarity=0.236 Sum_probs=84.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEccccC-Cc---cCC
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE------AGLQDLIRLYLCDYRQ-LA---KAN 695 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~------~~l~~~v~~~~~d~~~-~~---~~~ 695 (842)
..++.+|||||||+|.++..+|+. ++.+|+|+|+|+.+++.|+++++. .++ .+++++++|+.+ ++ +++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence 456779999999999999999988 578999999999999999998764 344 489999999987 44 468
Q ss_pred CccEEEEcchhhhcChh------hHHHHHHHHHhccccCcEEEEEe
Q 035870 696 KYDRIISCEMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+||.|+++..-.+.... ....+++++.++|||||.+++.+
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99999986543332110 01579999999999999999864
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=139.59 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=91.0
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccccCCcc-----CCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-LIRLYLCDYRQLAK-----ANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~~~-----~~~fD~i 700 (842)
..++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|+++++.+++.+ +++++++|+.++.. .++||+|
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 356789999999999999999997 7799999999999999999999999875 59999999887641 5789999
Q ss_pred EEcchhhhcC--------hhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEAVG--------HEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~~~--------~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+++....... .+.+..+++++.++|||||.+++....
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 9965422211 124788999999999999998775543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=140.12 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=93.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c------CCCcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K------ANKYD 698 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~------~~~fD 698 (842)
.++.+|||||||+|..+..+|+. .+++|+++|+|+++++.|+++++..++.++|+++++|+.+.. . .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 45679999999999999999986 268999999999999999999999999889999999987654 1 48999
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+|++... ...+..+++++.++|||||++++.++....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9998754 234788999999999999999998776543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=138.54 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCC-CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKARV-SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
..++.+++.+.. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++ +++++++|+.+..+
T Consensus 16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~ 93 (215)
T 4dzr_A 16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLI 93 (215)
T ss_dssp HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhh
Confidence 345566777665 78899999999999999999998 467999999999999999999988776 78999999887334
Q ss_pred C-----CCccEEEEcchhhhcC------hh------------------hHHHHHHHHHhccccCcEEEE
Q 035870 694 A-----NKYDRIISCEMIEAVG------HE------------------FMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 694 ~-----~~fD~i~s~~~~~~~~------~~------------------~~~~~~~~~~~~LkpgG~~~~ 733 (842)
+ ++||+|+++..+.+.. .+ .+..+++++.++|||||++++
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4 8999999975543322 11 127889999999999999444
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=135.62 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=96.3
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++..++.++++++++|+.+..++++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 46777888999999999999999999999987 3689999999999999999999998886689999999887654568
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
||+|+++ .++ ...+++++.++|||||++++..
T Consensus 182 ~D~V~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 182 VDALFLD-----VPD--PWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp EEEEEEC-----CSC--GGGTHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999984 333 4688999999999999999965
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=130.74 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=93.8
Q ss_pred HHHHHHcC--CCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEccccC
Q 035870 619 SLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAGL----QDLIRLYLCDYRQ 690 (842)
Q Consensus 619 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~ 690 (842)
..+++.+. ++++.+|||||||+|.++..+++..+ .+|+++|+|+.+++.+++++...++ .++++++++|..+
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 35556664 77899999999999999999998743 6999999999999999999988664 3489999999886
Q ss_pred Cc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 691 LA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 691 ~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.. ..++||+|++...++++. +++.++|||||++++...+.
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred CcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 65 457899999998887764 46889999999999976543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=134.98 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=96.4
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-----C
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKR-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-----A 694 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-----~ 694 (842)
...+.++++.+|||+|||+|..+..+++. .+ .+|+++|+|+.+++.++++++..|+. +++++++|+.+++. .
T Consensus 76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTT
T ss_pred HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhcc
Confidence 34567789999999999999999999986 34 79999999999999999999999987 89999999987752 5
Q ss_pred CCccEEEEcchhhhcC----------------hhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 695 NKYDRIISCEMIEAVG----------------HEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~----------------~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++||+|++.......+ .+....+++++.++|||||++++.+++..
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 7899999973221111 02357899999999999999999877654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=135.64 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=91.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc-
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY- 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f- 697 (842)
+.+++.+...++.+|||+|||+|.++..+++.++++|+|+|+|+++++.|+++++.+++.++++++++|+.+..+ ++|
T Consensus 113 ~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f~ 191 (284)
T 1nv8_A 113 ELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKFA 191 (284)
T ss_dssp HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGTT
T ss_pred HHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cccC
Confidence 344444433467799999999999999999876789999999999999999999999998789999999887433 578
Q ss_pred --cEEEEcchhh-----------hcCh------hhHHHHHHHHH-hccccCcEEEEE
Q 035870 698 --DRIISCEMIE-----------AVGH------EFMEEFFGCCE-SLLAEDGLLVLQ 734 (842)
Q Consensus 698 --D~i~s~~~~~-----------~~~~------~~~~~~~~~~~-~~LkpgG~~~~~ 734 (842)
|+|+|+.... |-+. ++...+++++. +.|||||.+++.
T Consensus 192 ~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 192 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999984322 2211 11227899999 999999999984
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.7e-13 Score=135.28 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=91.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-c------CCCc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-K------ANKY 697 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~------~~~f 697 (842)
.++.+|||||||+|..+..+++. + +++|+++|+|+++++.|+++++..++.++++++++|+.+. + . .++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 45679999999999999999987 3 7899999999999999999999999977899999998764 2 1 5789
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+|++... ...+..+++++.++|||||++++..+..
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 99998643 2347899999999999999999976544
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=142.67 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhcccccee
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYV 294 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~~ 294 (842)
..+++.|.+.+++.|++|+++++|++|+.+++++.|++.+| ++.||.||+|+..+. ..+++. .. ..++..
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~~-~g-------~~~pl~ 219 (389)
T 2gf3_A 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLLSK-LN-------LDIPLQ 219 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHGGG-GT-------EECCCE
T ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH-HHHhhh-hc-------cCCceE
Confidence 58889999999999999999999999999888899988777 799999999998764 334332 00 011222
Q ss_pred ec-eEEEecCCCC--cC---CCCC-Ccce---eeecc-cCCC-ceEEEEEcc----cccC----C--C----CCCCCeEE
Q 035870 295 YS-DIFLHRDKRF--MP---QNPA-AWSA---WNFLE-SFDS-KVCLTYWLN----VLQN----L--G----ETSLPFLV 348 (842)
Q Consensus 295 ~~-~v~l~~~~~~--~p---~~~~-~~~~---~~~~~-~~~~-~~~v~~~~~----~l~~----l--~----~~~~~~~~ 348 (842)
+. ..++.++..- +. .... .+.. ..|.. .+++ ...+..... .... . . +.+.+.+.
T Consensus 220 ~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (389)
T 2gf3_A 220 PYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLE 299 (389)
T ss_dssp EEEEEEEEECCCHHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCcccccccccCCEEEEeCCCCcEEEcCCCCCCcEEEEEcCCCCccCcccccCccCCCHHHHHHHHHHHH
Confidence 21 1112222210 00 0000 0000 11221 1223 444432110 0000 0 0 00011112
Q ss_pred ecCCCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCCccc
Q 035870 349 TLNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 349 ~l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~~~~ 422 (842)
.+.|.... .+...|...+|.- ++..+.+...+..+|+|++.++.|.|+ ..|..+|+.+|+.|++...+
T Consensus 300 ~~~P~l~~-~~~~~w~g~r~~t----~D~~p~ig~~~~~~~l~~a~G~~g~G~-~~ap~~g~~la~~i~~~~~~ 367 (389)
T 2gf3_A 300 EYMPGANG-ELKRGAVCMYTKT----LDEHFIIDLHPEHSNVVIAAGFSGHGF-KFSSGVGEVLSQLALTGKTE 367 (389)
T ss_dssp HHCGGGCS-CEEEEEEEEEEEC----TTSCCEEEEETTEEEEEEEECCTTCCG-GGHHHHHHHHHHHHHHSCCS
T ss_pred HhCCCCCC-CceEEEEEEeccC----CCCCeEEccCCCCCCEEEEECCccccc-cccHHHHHHHHHHHcCCCCC
Confidence 22332222 4555675544321 122233333334579999999999999 89999999999999987633
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-12 Score=130.91 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=97.2
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
..+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++.+..++.+++++..+|+.+.. ++++|
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 159 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIF 159 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCB
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcc
Confidence 46777888899999999999999999999998 88999999999999999999999888778999999998876 56789
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|+|++. .++ +..+++++.++|||||++++...
T Consensus 160 D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 160 HAAFVD-----VRE--PWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp SEEEEC-----SSC--GGGGHHHHHHHBCTTCEEEEEES
T ss_pred cEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 999984 333 56889999999999999999654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-13 Score=131.96 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=93.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
..++.+|||||||+|.++..+ +.+|+|+|+|+. +++++++|+.+++ ++++||+|++..+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLS 124 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence 467789999999999998876 368999999987 3678999999887 5678999999999
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEE
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVE 785 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~ 785 (842)
+++ . ++..+++++.++|||||++++.++.. ..++..++.+.+.+ +||+++...
T Consensus 125 l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~-----------------------~~~~~~~~~~~l~~-~Gf~~~~~~ 177 (215)
T 2zfu_A 125 LMG-T--NIRDFLEEANRVLKPGGLLKVAEVSS-----------------------RFEDVRTFLRAVTK-LGFKIVSKD 177 (215)
T ss_dssp CCS-S--CHHHHHHHHHHHEEEEEEEEEEECGG-----------------------GCSCHHHHHHHHHH-TTEEEEEEE
T ss_pred ccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCC-----------------------CCCCHHHHHHHHHH-CCCEEEEEe
Confidence 964 3 48999999999999999999975431 11367888888876 899988866
Q ss_pred ecC
Q 035870 786 NIG 788 (842)
Q Consensus 786 ~~~ 788 (842)
...
T Consensus 178 ~~~ 180 (215)
T 2zfu_A 178 LTN 180 (215)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-13 Score=137.67 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCC-CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEccccCCc-
Q 035870 616 RKVSLLIEKARVS-KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIR-LYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~-~~~~d~~~~~- 692 (842)
.|+..+++.+.+. ++.+|||||||||.++..+++....+|+|+|+|++|++.+.++- .++. +...|++.+.
T Consensus 71 ~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~ 144 (291)
T 3hp7_A 71 LKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEP 144 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCG
T ss_pred HHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecch
Confidence 4667788888775 67899999999999999999984459999999999999854421 1443 3344555554
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhc-cc--CCCCCCCH
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEY-IF--PGGCLPSL 766 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~--p~~~~~~~ 766 (842)
+..+||.|++..+++++ ..++.+++++|||||++++.. .|. ++.. ...+.+. +. |..+....
T Consensus 145 ~~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPq--fe~~---~~~~~~~G~vrd~~~~~~~~ 212 (291)
T 3hp7_A 145 VDFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQ--FEAG---REQIGKNGIVRESSIHEKVL 212 (291)
T ss_dssp GGCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGG--GTSC---GGGCC-CCCCCCHHHHHHHH
T ss_pred hhCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--Ccc--cccC---hhhcCCCCccCCHHHHHHHH
Confidence 23459999998887754 678999999999999999852 221 1111 1111110 00 00111256
Q ss_pred HHHHHHHhhcCCcEEEEEEe
Q 035870 767 SRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 767 ~~~~~~~~~~~gf~v~~~~~ 786 (842)
.++.+.+.+ +||.+..+..
T Consensus 213 ~~v~~~~~~-~Gf~v~~~~~ 231 (291)
T 3hp7_A 213 ETVTAFAVD-YGFSVKGLDF 231 (291)
T ss_dssp HHHHHHHHH-TTEEEEEEEE
T ss_pred HHHHHHHHH-CCCEEEEEEE
Confidence 677777776 8999888765
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=134.78 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=97.2
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-C-CCCCeEEEEccccCCc-
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA-G-LQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~-~-l~~~v~~~~~d~~~~~- 692 (842)
...++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+++++.|+++++.. + +.++++++++|+.+.+
T Consensus 88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 356778888899999999999999999999986 4689999999999999999999887 5 5568999999998876
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++++||+|++. +++ +..+++++.++|||||++++....
T Consensus 168 ~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVLD-----MLA--PWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEEE-----SSC--GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCceeEEEEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 56789999983 333 458899999999999999997654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.36 E-value=9e-13 Score=131.70 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=89.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c-cCCCccEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A-KANKYDRIISC 703 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~-~~~~fD~i~s~ 703 (842)
.++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..++.++++++++|..+. + .++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 35679999999999999999987 3 6899999999999999999999988877899999998764 3 335 9999987
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.. ......+++++.++|||||++++.+...
T Consensus 134 ~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 134 CD-----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp TT-----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred CC-----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 43 2347899999999999999999976543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=130.97 Aligned_cols=111 Identities=16% Similarity=0.278 Sum_probs=93.0
Q ss_pred HHHHHHc--CCCCCCeEEEeccCchHHHHHHHHhcC------CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEc
Q 035870 619 SLLIEKA--RVSKGQEVLEIGCGWGTLAIEIVKRTG------CKYTGITLSEEQLKYAEMKVKEAGL----QDLIRLYLC 686 (842)
Q Consensus 619 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~------~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~~~ 686 (842)
..+++.+ .++++.+|||||||+|.++..+++..+ .+|+++|+|+++++.|+++++..++ .++++++++
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence 3455555 478899999999999999999998743 5999999999999999999998873 348999999
Q ss_pred cccCC-----ccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 687 DYRQL-----AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 687 d~~~~-----~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|..+. ...++||+|++...++++. +++.++|||||++++....
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 98775 3347899999999888763 5688999999999997654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=132.38 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred HHHHHHHc--CCCCCCeEEEeccCchHHHHHHHHhcC-------CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEE
Q 035870 618 VSLLIEKA--RVSKGQEVLEIGCGWGTLAIEIVKRTG-------CKYTGITLSEEQLKYAEMKVKEAGL----QDLIRLY 684 (842)
Q Consensus 618 ~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~-------~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~ 684 (842)
...+++.+ .++++.+|||||||+|.++..+++..+ .+|+++|+|+++++.|++++...++ .++++++
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 34566666 478899999999999999999998633 5999999999999999999887651 2379999
Q ss_pred EccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 685 LCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 685 ~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++|..+.. ..++||+|++...++++. +++.++|||||++++....
T Consensus 151 ~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 151 EGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred ECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 99988733 337899999999988875 4689999999999997643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=141.43 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=117.6
Q ss_pred HHHHHc--CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 620 LLIEKA--RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 620 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
.+++.+ .+.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++ . .+++++.+|+.+ +. .+
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~-~~ 251 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SI-PS 251 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CC-CC
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CC-CC
Confidence 344544 3456789999999999999999998 6789999999 788877764 2 269999999877 42 25
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhcccc---CcEEEEEeecCCCcccc----cccCccchhhhcccCCCCCCCHHHH
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAE---DGLLVLQFISIPDERYN----EYRLSSDFIKEYIFPGGCLPSLSRI 769 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp---gG~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~p~~~~~~~~~~ 769 (842)
||+|++..++||++++....++++++++||| ||++++.+...++.... ......++.. ...+++...+..++
T Consensus 252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~g~~~t~~e~ 330 (358)
T 1zg3_A 252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVM-LTMFLGKERTKQEW 330 (358)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHH-HHHHSCCCEEHHHH
T ss_pred ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHH-hccCCCCCCCHHHH
Confidence 9999999999999987677999999999999 99999988776543211 0111111111 11345677799999
Q ss_pred HHHHhhcCCcEEEEEEec
Q 035870 770 TSAMSVASRLCVEQVENI 787 (842)
Q Consensus 770 ~~~~~~~~gf~v~~~~~~ 787 (842)
.+.+.+ +||++.++...
T Consensus 331 ~~ll~~-aGf~~~~~~~~ 347 (358)
T 1zg3_A 331 EKLIYD-AGFSSYKITPI 347 (358)
T ss_dssp HHHHHH-TTCCEEEEEEE
T ss_pred HHHHHH-cCCCeeEEEec
Confidence 888887 89998887664
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=134.04 Aligned_cols=108 Identities=22% Similarity=0.196 Sum_probs=91.7
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c---c------
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A---K------ 693 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~---~------ 693 (842)
...++.+|||||||+|..+..+++.. +.+|+++|+|+++++.|+++++..++.++++++++|..+. + .
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 34578899999999999999999883 6899999999999999999999999877799999998653 2 1
Q ss_pred -------C-CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 694 -------A-NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 694 -------~-~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+ ++||+|++....+ .+..+++++.++|||||++++..+..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 2 7899999975433 36789999999999999999976543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-12 Score=137.65 Aligned_cols=118 Identities=25% Similarity=0.286 Sum_probs=99.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
...++..+..+++.+|||+|||+|.+++.++... +.+|+|+|+|+.+++.|+++++.+|++ ++++.++|+.+++ +.
T Consensus 192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcccc
Confidence 3456777788899999999999999999999873 489999999999999999999999998 8999999999987 55
Q ss_pred CCccEEEEcchhhhc-C-----hhhHHHHHHHHHhccccCcEEEEEee
Q 035870 695 NKYDRIISCEMIEAV-G-----HEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~-~-----~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+.||+|+++..+..- + .+.+..+++++.++|||||++++.+.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 679999998664321 1 11247899999999999999999543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=133.31 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=87.0
Q ss_pred CCCeEEEeccCchH----HHHHHHHh-c----CCEEEEEcCCHHHHHHHHHHHHH-----------------------cC
Q 035870 629 KGQEVLEIGCGWGT----LAIEIVKR-T----GCKYTGITLSEEQLKYAEMKVKE-----------------------AG 676 (842)
Q Consensus 629 ~~~~vLDiGcG~G~----~~~~la~~-~----~~~v~gid~s~~~~~~a~~~~~~-----------------------~~ 676 (842)
++.+|||+|||+|. +++.+++. + +.+|+|+|+|+++++.|++++-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 66667765 2 36999999999999999986410 00
Q ss_pred -------CCCCeEEEEccccCCc-c-CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 677 -------LQDLIRLYLCDYRQLA-K-ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 677 -------l~~~v~~~~~d~~~~~-~-~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
+.++|+|.+.|+.+.+ + .++||+|+|..++.|+.++....+++++++.|||||++++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1136999999998854 2 5789999999999999987789999999999999999998
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=133.76 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=85.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCCeEEEEccccCCc---cCCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE---AGLQDLIRLYLCDYRQLA---KANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~---~~l~~~v~~~~~d~~~~~---~~~~fD~ 699 (842)
.+++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++.. .....+++++.+|+.+.. .+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 356789999999999999999987 457999999999999999998742 122348999999987765 3579999
Q ss_pred EEEcchhhhcChhhH--HHHHHHHHhccccCcEEEEEe
Q 035870 700 IISCEMIEAVGHEFM--EEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 700 i~s~~~~~~~~~~~~--~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|++.....+.+...+ .+++++++++|||||+++++.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999776554333222 689999999999999999974
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=130.86 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=91.1
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--c------CCCc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--K------ANKY 697 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~------~~~f 697 (842)
.++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..|+.++++++++|..+.. . .++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 46679999999999999999987 3 68999999999999999999999999878999999987642 1 4789
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+|++... ...+..+++.+.++|||||++++..+..
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99998643 2347899999999999999999976543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=133.22 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
.++++.+|||+|||+|.++..+++. .+++|+++|+|+++++.|+++++.+++. ++.++++|+.+.+..++||+|++..
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECC
Confidence 3678999999999999999999998 4569999999999999999999999986 7899999998874346899999987
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
.. ....++.++.+.|||||.+++.+...
T Consensus 195 p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 64 25678999999999999999977654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=128.45 Aligned_cols=106 Identities=22% Similarity=0.174 Sum_probs=86.9
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCC
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KAN 695 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~ 695 (842)
++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.++++++.. ++++++++|+.+.. ..+
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCC
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccC
Confidence 344457889999999999999999999873 479999999999999999988654 48999999988732 246
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+||+|++... .......+++++.++|||||++++.
T Consensus 143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999998654 2222445699999999999999997
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-12 Score=130.17 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=90.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cC--CCcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KA--NKYD 698 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~--~~fD 698 (842)
.++.+|||||||+|..+..+++.. +++|+++|+|+++++.|+++++..++.++++++++|+.+.. .+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 456799999999999999999873 67999999999999999999999998778999999976532 12 7899
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+|++... ...+..+++++.++|||||++++.++...
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 9998754 23478999999999999999999776543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=129.19 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=91.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c-C---CCc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K-A---NKY 697 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~-~---~~f 697 (842)
..++.+|||||||+|..+..+++. + +.+|+++|+|+++++.|+++++..++.++++++++|+.+.. . . ++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 356789999999999999999987 3 68999999999999999999999998789999999986542 1 1 689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
|+|++... ...+..+++++.++|||||.+++.++..
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99999654 2347889999999999999999976543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-11 Score=120.41 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=86.8
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEc
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
.....++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..++ +++++++|+.+++ ++||+|+++
T Consensus 44 ~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~ 119 (207)
T 1wy7_A 44 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMN 119 (207)
T ss_dssp HTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEEC
T ss_pred HcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEc
Confidence 335567899999999999999999988335899999999999999999988877 7999999999986 689999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
..+++........+++++.++| |+.++
T Consensus 120 ~p~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 120 PPFGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp CCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred CCCccccCCchHHHHHHHHHhc--CcEEE
Confidence 9887775444567889999988 55433
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-12 Score=128.27 Aligned_cols=107 Identities=18% Similarity=0.331 Sum_probs=85.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--------CCCCCeEEEEccccC-Cc---c
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA--------GLQDLIRLYLCDYRQ-LA---K 693 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--------~l~~~v~~~~~d~~~-~~---~ 693 (842)
++++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++++.+ ++. +++++++|+.+ ++ +
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhcc
Confidence 457789999999999999999988 4579999999999999999998876 664 89999999887 43 3
Q ss_pred CCCccEEEEcchhhhcChh------hHHHHHHHHHhccccCcEEEEE
Q 035870 694 ANKYDRIISCEMIEAVGHE------FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~------~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+++|.|+....-.+.... ....+++++.++|||||.+++.
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 5789999865321111000 0158999999999999999984
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-12 Score=122.10 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=94.6
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc----CCCccE
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK----ANKYDR 699 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~----~~~fD~ 699 (842)
.+++++|.+|||||||. +++|+|++|++.|+++... +++++++|+.+++. +++||+
T Consensus 7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeE
Confidence 45678999999999996 2399999999999988532 58999999988763 678999
Q ss_pred EEEcchhhhc-ChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCC
Q 035870 700 IISCEMIEAV-GHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASR 778 (842)
Q Consensus 700 i~s~~~~~~~-~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~g 778 (842)
|+++.+++|+ .+ +..++++++++|||||++++........ .. .....+..++.+.+.+ +|
T Consensus 67 V~~~~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~l~~-aG 127 (176)
T 2ld4_A 67 ILSGLVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETAV------DN----------NSKVKTASKLCSALTL-SG 127 (176)
T ss_dssp EEECCSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSS------CS----------SSSSCCHHHHHHHHHH-TT
T ss_pred EEECChhhhcccC--HHHHHHHHHHHCCCCEEEEEEccccccc------cc----------ccccCCHHHHHHHHHH-CC
Confidence 9999999999 55 6899999999999999999954321110 00 1122467888888887 89
Q ss_pred cEEEEEEe
Q 035870 779 LCVEQVEN 786 (842)
Q Consensus 779 f~v~~~~~ 786 (842)
| +. +..
T Consensus 128 f-i~-~~~ 133 (176)
T 2ld4_A 128 L-VE-VKE 133 (176)
T ss_dssp C-EE-EEE
T ss_pred C-cE-eec
Confidence 9 65 444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.7e-12 Score=122.83 Aligned_cols=106 Identities=8% Similarity=0.124 Sum_probs=94.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
.+..+|||||||||.++..++.. +..+|+++|+++.+++.+++++..+|+. .++.+.|+..-++.++||+|+++-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCCCCCcchHHHHHHH
Confidence 44679999999999999999887 7789999999999999999999999874 78999998887777899999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+|+.++.....+ ++.+.|+|+|.++....
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 999876666777 89999999999887544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-11 Score=132.11 Aligned_cols=152 Identities=26% Similarity=0.259 Sum_probs=108.0
Q ss_pred hhhhhhhcCChHHHHhccCCC---Cccccccc-CCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh
Q 035870 575 RNISRHYDLSNELFSLFLDES---MTYSCAVF-KSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR 650 (842)
Q Consensus 575 ~~i~~~Yd~~~~~~~~~l~~~---~~ys~~~~-~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~ 650 (842)
.++.-+++..++.+..++|.+ ..+..+|- .....++.+. ....++... .+++.+|||+|||+|.+++.+++.
T Consensus 163 p~~~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~---la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~ 238 (373)
T 3tm4_A 163 PAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKAS---IANAMIELA-ELDGGSVLDPMCGSGTILIELALR 238 (373)
T ss_dssp CSEEEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHH---HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHT
T ss_pred CCeEEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHH---HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHh
Confidence 345556666777777777643 12223321 1112223332 223445555 778999999999999999999988
Q ss_pred cCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcC------hhhHHHHHHHH
Q 035870 651 TGC--KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVG------HEFMEEFFGCC 721 (842)
Q Consensus 651 ~~~--~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~------~~~~~~~~~~~ 721 (842)
+. +|+|+|+|+.+++.|+++++.+|+.++++++++|+.+++ ++++||+|+++..+..-. .+.+..+++++
T Consensus 239 -~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l 317 (373)
T 3tm4_A 239 -RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNEL 317 (373)
T ss_dssp -TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHH
T ss_pred -CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHH
Confidence 44 999999999999999999999999778999999999988 568999999987643221 11247888999
Q ss_pred HhccccCcEEEE
Q 035870 722 ESLLAEDGLLVL 733 (842)
Q Consensus 722 ~~~LkpgG~~~~ 733 (842)
+++| +|.+++
T Consensus 318 ~r~l--~g~~~~ 327 (373)
T 3tm4_A 318 AKVL--EKRGVF 327 (373)
T ss_dssp HHHE--EEEEEE
T ss_pred HHHc--CCeEEE
Confidence 9988 444444
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=130.81 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCCeEEEeccCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC---c--cCCCcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-----TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL---A--KANKYD 698 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~--~~~~fD 698 (842)
++.+|||||||+|..+..+++. ++++|+|+|+|+++++.|+ ++.++|+++++|..+. + .+.+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 5679999999999999999986 4789999999999999887 2235899999999885 4 234799
Q ss_pred EEEEcchhhhcChhhHHHHHHHHHh-ccccCcEEEEEee
Q 035870 699 RIISCEMIEAVGHEFMEEFFGCCES-LLAEDGLLVLQFI 736 (842)
Q Consensus 699 ~i~s~~~~~~~~~~~~~~~~~~~~~-~LkpgG~~~~~~~ 736 (842)
+|++... |. .+..+++++.+ +|||||++++.++
T Consensus 155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998665 32 37889999997 9999999999664
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-12 Score=142.63 Aligned_cols=193 Identities=15% Similarity=0.109 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEe---------------CCCcE-EEEeCCCcEE--eCCEEEEccChHHHHHh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLP---------------ADKGC-TIVCGDGSRE--FYNSCVMALHAPDALKI 275 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~---------------~~~~v-~V~~~~G~~~--~ad~VV~A~p~~~~~~l 275 (842)
...+++.|.+.++++|++|+.+++|++|.. +++++ .|.+.+| ++ .||.||+|+..+.. ++
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l 257 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RL 257 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HH
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HH
Confidence 458999999999999999999999999998 56665 7888888 68 99999999988743 33
Q ss_pred hcCCCChHHHHhccccceeece-EEEecCCCC--cCC----------C--CCCcc-eeeecc-cCC-CceEEEEEccc--
Q 035870 276 LGNQATFDETRILGAFQYVYSD-IFLHRDKRF--MPQ----------N--PAAWS-AWNFLE-SFD-SKVCLTYWLNV-- 335 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~~~~~~-v~l~~~~~~--~p~----------~--~~~~~-~~~~~~-~~~-~~~~v~~~~~~-- 335 (842)
++. .. ..++..+.+ .++.++..- ++. . ...+. ...|.. .++ +...+......
T Consensus 258 ~~~-~g-------~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~~~~g~~~iG~~~~~~~ 329 (448)
T 3axb_A 258 LNP-LG-------IDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGR 329 (448)
T ss_dssp HGG-GT-------CCCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEETTTEEEEEETTTTEEEEEECCCTTS
T ss_pred HHH-cC-------CCCcccccceEEEEeCCcccccccccccccccccCCCceEEcCCceEEeecCCCCeEEEecCCcccC
Confidence 332 00 011222211 111121110 000 0 00000 011111 123 34444332210
Q ss_pred ccCCCC-----------CCCCeEEecCCCCCCcceeEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCch
Q 035870 336 LQNLGE-----------TSLPFLVTLNPDHVPEHTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHED 404 (842)
Q Consensus 336 l~~l~~-----------~~~~~~~~l~~~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~ 404 (842)
...... .+.+.+..+.|......+...|...+|..++ +..+.+.... +|||++.++.+.|+ ..
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t~---d~~p~ig~~~--~~l~~a~G~~g~G~-~~ 403 (448)
T 3axb_A 330 PFALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDISFD---ANPVVFEPWE--SGIVVAAGTSGSGI-MK 403 (448)
T ss_dssp CBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEETT---SSCEEECGGG--CSEEEEECCTTCCG-GG
T ss_pred CcccccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEEEeccccC---CCCcEeeecC--CCEEEEECCCchhH-hH
Confidence 000000 0111122233332333455667554443111 1222333332 79999999999999 89
Q ss_pred hHhHHHHHHHHhcCCccc
Q 035870 405 GLKAGMTAAHGVLGKSCT 422 (842)
Q Consensus 405 A~~SG~~aA~~Il~~~~~ 422 (842)
|...|+.+|+.|++...+
T Consensus 404 ap~~g~~la~~i~~~~~~ 421 (448)
T 3axb_A 404 SDSIGRVAAAVALGMESV 421 (448)
T ss_dssp HHHHHHHHHHHHTTCSEE
T ss_pred hHHHHHHHHHHHcCCCcc
Confidence 999999999999987644
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=132.84 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcC----------CCCCeEEEE
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEAG----------LQDLIRLYL 685 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gid~s~~~~~~a~~~~~~~~----------l~~~v~~~~ 685 (842)
...++..+.+.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.|++++...+ +.+++++++
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34567777889999999999999999999998733 799999999999999999988632 335899999
Q ss_pred ccccCCc---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 686 CDYRQLA---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 686 ~d~~~~~---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+|+.+.. ++++||+|++... . +..+++++.++|||||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~--~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----N--PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----S--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----C--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9998863 4568999998532 2 234789999999999999986543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-13 Score=134.33 Aligned_cols=152 Identities=11% Similarity=0.160 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCC-CCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EccccCCc
Q 035870 616 RKVSLLIEKARVS-KGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLY-LCDYRQLA 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~-~~d~~~~~ 692 (842)
.|+..+++.+.+. ++.+|||||||+|.++..+++. + .+|+|+|+|++|++.|+++.. ++... ..+++.+.
T Consensus 23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~ 95 (232)
T 3opn_A 23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAV 95 (232)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCC
T ss_pred HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeC
Confidence 3566777777764 5679999999999999999998 5 599999999999999876532 22211 12222221
Q ss_pred ----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhh-ccc--CCCCCCC
Q 035870 693 ----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKE-YIF--PGGCLPS 765 (842)
Q Consensus 693 ----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~--p~~~~~~ 765 (842)
+...||.+.+..++.++ ..++++++++|||||++++.. .| .++.. ...+.+ -+. |..+..+
T Consensus 96 ~~~~~~~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p--~~e~~---~~~~~~~G~~~d~~~~~~~ 163 (232)
T 3opn_A 96 LADFEQGRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KP--QFEAG---REQVGKNGIIRDPKVHQMT 163 (232)
T ss_dssp GGGCCSCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CH--HHHSC---HHHHC-CCCCCCHHHHHHH
T ss_pred HhHcCcCCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Cc--ccccC---HHHhCcCCeecCcchhHHH
Confidence 11135666555555443 678999999999999999843 11 11110 000000 000 0011126
Q ss_pred HHHHHHHHhhcCCcEEEEEEec
Q 035870 766 LSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 766 ~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
..++.+.+.+ +||++..+...
T Consensus 164 ~~~l~~~l~~-aGf~v~~~~~~ 184 (232)
T 3opn_A 164 IEKVLKTATQ-LGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHHH-HTEEEEEEEEC
T ss_pred HHHHHHHHHH-CCCEEEEEEEc
Confidence 6788777776 89999887653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=134.29 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=97.4
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
.+...+.++++.+|||+|||+|+.+.++|+.. ..+|+++|+|+.+++.++++++..|+. +.++++|..+++ ..+
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~ 169 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGT 169 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCS
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccc
Confidence 34456678899999999999999999999872 369999999999999999999999986 999999988876 357
Q ss_pred CccEEEEc------chhhhcChh--------------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 696 KYDRIISC------EMIEAVGHE--------------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 696 ~fD~i~s~------~~~~~~~~~--------------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+||+|++. +++.+-++. ....+++++.++|||||++++.+++...
T Consensus 170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~ 234 (464)
T 3m6w_A 170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP 234 (464)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence 89999973 333332221 1378899999999999999998877543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=133.38 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=98.2
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
.+...+.++++.+|||+|||+|..+.++++. .+ .+|+++|+|+.+++.++++++..|+. +++++++|+.+++ ++
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhcc
Confidence 3455667889999999999999999999987 34 79999999999999999999999986 7999999998876 22
Q ss_pred CCccEEEEc------chhhhcChhh--------------HHHHHHHHHhccccCcEEEEEeecCC
Q 035870 695 NKYDRIISC------EMIEAVGHEF--------------MEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~~~--------------~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++||+|++. +++.+.++.. ...+++++.++|||||++++.+++..
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 689999973 3444443311 16789999999999999999887654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=121.85 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=84.0
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhc---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRT---GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
++..+.+... ++++.+|||||||+|.++..++++. +++|+|+|+|+.+ .. .+++++++|+.+.+
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDN 76 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTS
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchh
Confidence 4455666655 5788999999999999999999883 5799999999831 12 37899999987764
Q ss_pred --------------------------cCCCccEEEEcchhhhcChhh---------HHHHHHHHHhccccCcEEEEEeec
Q 035870 693 --------------------------KANKYDRIISCEMIEAVGHEF---------MEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 --------------------------~~~~fD~i~s~~~~~~~~~~~---------~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++++||+|+++.++++.+... ...+++++.++|||||.+++..+.
T Consensus 77 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 77 MNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp SCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 346899999988776643211 124789999999999999986543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=134.37 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=98.0
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
.+...+.++++++|||+|||+|+.+.++|+. . ..+|+++|+|+.+++.++++++..|+. ++.++++|..++. .++
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~ 174 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSG 174 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccc
Confidence 3445667889999999999999999999987 2 369999999999999999999999986 7999999988875 457
Q ss_pred CccEEEEcc------hhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 696 KYDRIISCE------MIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 696 ~fD~i~s~~------~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
+||+|++.. ++.+-++ +....+++++.++|||||+++.++++...
T Consensus 175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 999999853 2222111 11347899999999999999998887654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=128.10 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=85.9
Q ss_pred CeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcchh
Q 035870 631 QEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEMI 706 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~~ 706 (842)
.+|||||||+|.++..+++. ++.+|+++|+|+++++.|++++.... .++++++++|..+.. ++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999995 68899999999999999999875432 348999999987753 35789999996433
Q ss_pred hhcChhh--HHHHHHHHHhccccCcEEEEEeecC
Q 035870 707 EAVGHEF--MEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 707 ~~~~~~~--~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
....... ..+++++++++|||||+++++....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 2211111 2789999999999999999987643
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=133.74 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=54.5
Q ss_pred EecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 209 TVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 209 ~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
++......+.+.|.+.+++.|++|+++++|++|..+++++.|++.+| ++.||.||+|+....
T Consensus 126 ~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S 187 (417)
T 3v76_A 126 FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS 187 (417)
T ss_dssp EESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred eeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence 34555678999999999999999999999999999988999999988 899999999987653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.2e-12 Score=120.56 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=88.3
Q ss_pred HHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 617 KVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 617 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
++..+++.+. ++++.+|||+|||+|.++..+++.. +.+++++|+|+ +++. .+++++++|+.+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchh
Confidence 3445666655 6788999999999999999999883 58999999999 6532 37999999998763
Q ss_pred --------cCCCccEEEEcchhhhcChhh---------HHHHHHHHHhccccCcEEEEEeecC
Q 035870 693 --------KANKYDRIISCEMIEAVGHEF---------MEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 693 --------~~~~fD~i~s~~~~~~~~~~~---------~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
++++||+|+++.++++.+... ...+++++.++|||||.+++.....
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 347899999998887776421 1688999999999999999976543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=127.94 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=83.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++. .++.+..+|+.+++ ++++||+|+++.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57889999999999999999987 4789999999999999998874 26899999999887 6689999999765
Q ss_pred hhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 706 IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
. ..++++.++|||||++++.+...
T Consensus 158 ~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 158 P---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp C---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred h---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 2 34788999999999999977654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=132.53 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=90.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccccCCc-----cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-LIRLYLCDYRQLA-----KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~~-----~~~~fD~i~ 701 (842)
.++.+|||+|||+|.+++.+|+....+|+++|+|+.+++.|+++++.+++.+ +++++++|+.+.. ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5788999999999999999998733489999999999999999999999976 8999999987642 245899999
Q ss_pred Ecchhh-----hcCh--hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 702 SCEMIE-----AVGH--EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 702 s~~~~~-----~~~~--~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+..... +..+ +.+..+++.+.++|+|||.+++.+...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 975442 2221 235678889999999999999976543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-12 Score=130.20 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++.++++++++|+.+++. .
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-~ 92 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-P 92 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-C
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-h
Confidence 45568888888899999999999999999999998 789999999999999999998777665589999999988763 3
Q ss_pred CccEEEEcchhhhcChhhHHHHH--------------HHH--HhccccCcEEE
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFF--------------GCC--ESLLAEDGLLV 732 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~--------------~~~--~~~LkpgG~~~ 732 (842)
+||+|+++..++...+ ....++ +++ +++|||||.++
T Consensus 93 ~fD~vv~nlpy~~~~~-~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPYQISSP-FVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCGGGHHH-HHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCcccchH-HHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7999999755433211 111222 222 46899999874
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=129.99 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=87.2
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCc---cCCCcc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLA---KANKYD 698 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~---~~~~fD 698 (842)
..+++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++... ++ .++++++++|+.+.. ++++||
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 3456789999999999999999987 4579999999999999999988652 44 348999999987642 347899
Q ss_pred EEEEcchh--hhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 699 RIISCEMI--EAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 699 ~i~s~~~~--~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+|++...- .+...-....++++++++|||||.++++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99996542 11111124789999999999999999974
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-12 Score=132.39 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=85.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeccC------chHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCG------WGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG------~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (842)
.++.+++.+. .++.+||||||| +|+.+..++++ ++++|+|+|+|+.|.. ..++++++++|+
T Consensus 205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa 273 (419)
T 3sso_A 205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQ 273 (419)
T ss_dssp HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCT
T ss_pred HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecc
Confidence 3455666654 356799999999 78888888876 5789999999999731 124899999999
Q ss_pred cCCc-c------CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 689 RQLA-K------ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 689 ~~~~-~------~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+++ . +++||+|+|... ++. .++..+|++++++|||||++++.++.
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9876 3 589999999754 444 34789999999999999999998876
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=128.23 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=86.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEccccCC-c-cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE--AGL-QDLIRLYLCDYRQL-A-KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~-~-~~~~fD~i 700 (842)
..++.+|||||||+|.++..+++. +..+|+++|+|+++++.|++++.. .++ .++++++++|..+. + .+++||+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 456789999999999999999987 357999999999999999998765 344 45899999998763 2 35789999
Q ss_pred EEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++.......+.. ...+++++++++|||||.++++...
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 996543222111 2367899999999999999997643
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=119.12 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcch
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEM 705 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~ 705 (842)
...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++. +++++++|+.+++ ++||+|+++.+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCC
Confidence 556788999999999999999998833479999999999999998864 6899999999986 78999999999
Q ss_pred hhhcChhhHHHHHHHHHhcc
Q 035870 706 IEAVGHEFMEEFFGCCESLL 725 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~L 725 (842)
++|..+.....+++++.+++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp C-------CHHHHHHHHHHE
T ss_pred chhccCchhHHHHHHHHHhc
Confidence 99986544467888898888
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=130.70 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=88.8
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
.++|.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|+++++.+++.. ++.++|+.+.. ..+.||+|+++.
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dp 288 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDP 288 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECC
T ss_pred hcCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECC
Confidence 357999999999999999999997 7889999999999999999999999863 56799987753 234599999976
Q ss_pred hhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 705 MIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 705 ~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
...+-+. +.+..+++.+.++|||||.+++.+++..
T Consensus 289 P~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 289 PTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 5322111 2367889999999999999998766543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=133.94 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=96.3
Q ss_pred HHHcCCC--CCCeEEEeccCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCC
Q 035870 622 IEKARVS--KGQEVLEIGCGWGTLAIEIVKRT--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KAN 695 (842)
Q Consensus 622 ~~~l~~~--~~~~vLDiGcG~G~~~~~la~~~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~ 695 (842)
...+.+. ++++|||+|||+|..+.++|+.. +.+|+++|+|+.+++.++++++..|+. +++++++|..+++ .++
T Consensus 108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~ 186 (479)
T 2frx_A 108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPE 186 (479)
T ss_dssp HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTT
T ss_pred HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccc
Confidence 3455666 99999999999999999999873 479999999999999999999999986 7999999998875 357
Q ss_pred CccEEEEc------chhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 696 KYDRIISC------EMIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 696 ~fD~i~s~------~~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+||+|++. +++.+.++ +....+++++.++|||||++++.+++..
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 89999983 33433322 1135789999999999999999887754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=123.76 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=87.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-Ccc--CCCccEEEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LAK--ANKYDRIIS 702 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~--~~~fD~i~s 702 (842)
..++.+|||+| |+|.++..+++. ++.+|+++|+|+++++.|+++++..|+. +++++++|+.+ ++. +++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34688999999 999999999887 3369999999999999999999999987 89999999988 652 468999999
Q ss_pred cchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 703 CEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
+..+...+ ...+++++.++|||||++++
T Consensus 248 ~~p~~~~~---~~~~l~~~~~~LkpgG~~~~ 275 (373)
T 2qm3_A 248 DPPETLEA---IRAFVGRGIATLKGPRCAGY 275 (373)
T ss_dssp CCCSSHHH---HHHHHHHHHHTBCSTTCEEE
T ss_pred CCCCchHH---HHHHHHHHHHHcccCCeEEE
Confidence 87655432 58899999999999996533
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=118.65 Aligned_cols=110 Identities=24% Similarity=0.317 Sum_probs=84.3
Q ss_pred HHHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 616 RKVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 616 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
.|+..+.++.. ++++.+|||+|||+|.++..+++. +.+|+|+|+|+.. .+ .+++++++|+.+.+ .
T Consensus 11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIF 77 (191)
T ss_dssp HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHH
Confidence 45566777665 478999999999999999999998 8899999999742 22 37999999998764 1
Q ss_pred -------C----CCccEEEEcchhhhcCh---------hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 694 -------A----NKYDRIISCEMIEAVGH---------EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 694 -------~----~~fD~i~s~~~~~~~~~---------~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
. ++||+|+|.......+. +....+++.+.++|||||.+++..+..
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 1 49999999754322111 124577899999999999999876543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=132.86 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=92.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
+++.+|||+|||+|.++..+++....+|+++|+|+.+++.|+++++.+++.++++++++|+.+.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 47899999999999999999987334999999999999999999999998768999999987764 2578999999
Q ss_pred cchhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 703 CEMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 703 ~~~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
......... +.+..++.++.++|||||.+++.+...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 754322111 347889999999999999999877654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=130.88 Aligned_cols=107 Identities=26% Similarity=0.340 Sum_probs=83.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
.++.+|||||||+|..+..+++. +..+|+++|+|+++++.|++++... ++ .++++++.+|+.+.. .+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45679999999999999999987 4679999999999999999987653 33 458999999987643 457899999
Q ss_pred EcchhhhcCh-hhH--HHHHHHHHhccccCcEEEEEe
Q 035870 702 SCEMIEAVGH-EFM--EEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 702 s~~~~~~~~~-~~~--~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+... .+++. +.+ .+++++++++|||||.++++.
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654 33322 112 789999999999999999975
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-11 Score=127.40 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=88.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cC-C-CCCeEEEEccccCC-c-cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE--AG-L-QDLIRLYLCDYRQL-A-KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~-l-~~~v~~~~~d~~~~-~-~~~~fD~i 700 (842)
+++.+|||||||+|.++..+++. +..+|+++|+|+++++.|++++.. .+ + .++++++++|+.+. + .+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999987 467999999999999999998764 22 2 35899999998774 3 45789999
Q ss_pred EEcchhhh---cChhh--HHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEA---VGHEF--MEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~---~~~~~--~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++....+. -+.+. ..+++++++++|||||.++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99765433 11111 378999999999999999997543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=131.49 Aligned_cols=111 Identities=19% Similarity=0.109 Sum_probs=92.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEccccCCcc-----CCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL-QDLIRLYLCDYRQLAK-----ANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l-~~~v~~~~~d~~~~~~-----~~~fD~i~ 701 (842)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.|+++++.+++ +++++++++|+.+..+ .++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 57889999999999999999987335999999999999999999999998 6689999999877641 46899999
Q ss_pred EcchhhhcC-------hhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 702 SCEMIEAVG-------HEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 702 s~~~~~~~~-------~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+........ .+.+..++.++.++|||||.+++.+...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 986432211 1347889999999999999999976543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=130.63 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=86.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE--AGL-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
+++.+|||||||+|.++..+++. ++.+|+++|+|+++++.|++++.. .++ .++++++++|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999987 468999999999999999998765 233 358999999987642 357899999
Q ss_pred EcchhhhcC-hhhH--HHHHHHHHhccccCcEEEEEee
Q 035870 702 SCEMIEAVG-HEFM--EEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 702 s~~~~~~~~-~~~~--~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+... .+.+ .+.. .+++++++++|||||.++++..
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 9753 2221 1112 7899999999999999999754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-11 Score=130.06 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=98.3
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KA 694 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~ 694 (842)
..+...+..+++.+|||+|||+|..+.++++. ++.+|+++|+|+.+++.++++++..|+ +++++++|+.+++ ++
T Consensus 236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~ 313 (429)
T 1sqg_A 236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGE 313 (429)
T ss_dssp HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTT
T ss_pred HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhccc
Confidence 34556677889999999999999999999998 347999999999999999999999887 4799999998876 34
Q ss_pred CCccEEEEc------chhhhcChh--------------hHHHHHHHHHhccccCcEEEEEeecCCC
Q 035870 695 NKYDRIISC------EMIEAVGHE--------------FMEEFFGCCESLLAEDGLLVLQFISIPD 740 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~~--------------~~~~~~~~~~~~LkpgG~~~~~~~~~~~ 740 (842)
++||+|++. +++.+.++. ....+++++.++|||||++++.+++...
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~ 379 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 379 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 689999973 344444331 1258899999999999999998876543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=125.41 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccE
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDR 699 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~ 699 (842)
..+++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++...+ + .++++++++|+.+.. .+++||+
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 3456789999999999999999987 45799999999999999999875432 2 358999999987643 3578999
Q ss_pred EEEcchhhhcChhhH--HHHHHHHHhccccCcEEEEEee
Q 035870 700 IISCEMIEAVGHEFM--EEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 700 i~s~~~~~~~~~~~~--~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|++.....+.+.+.+ .++++.++++|||||.++++..
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 999654332222223 7999999999999999999754
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=112.85 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=88.5
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
.++.+|||||||+|.++..+. ++.+|+++|+|+.+++.+++++..++. +.++.++|+...++.++||+|+++-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567799999999999999877 588999999999999999999988874 6899999998888667999999999999
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|+.++.....+ ++.+.|+++|.++-..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98766556666 7777899998777643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-12 Score=131.55 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH-HHcCCCCCeEEE--EccccCCc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV-KEAGLQDLIRLY--LCDYRQLA 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~-~~~~l~~~v~~~--~~d~~~~~ 692 (842)
.|+..+.+...++++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..++++. .......++.++ ++|+.+++
T Consensus 69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 34556666655678999999999999999999987 6999999998 543332211 000111268999 99999887
Q ss_pred cCCCccEEEEcchhhhcChhh---H--HHHHHHHHhccccCc--EEEEEeec
Q 035870 693 KANKYDRIISCEMIEAVGHEF---M--EEFFGCCESLLAEDG--LLVLQFIS 737 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~---~--~~~~~~~~~~LkpgG--~~~~~~~~ 737 (842)
+++||+|+|..+ ++.+... . ..+++.+.++||||| .+++..+.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999876 4433211 1 137899999999999 99986655
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=128.15 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=84.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CC--------CCCeEEEEccccCCc-cCCC
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA--GL--------QDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~l--------~~~v~~~~~d~~~~~-~~~~ 696 (842)
.++.+|||||||+|.++..+++.+..+|+++|+|+++++.|++++ .. ++ .++++++.+|..+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 466899999999999999999884569999999999999999987 43 32 358999999986642 2478
Q ss_pred ccEEEEcchhhhcChhh--HHHHHHHHHhccccCcEEEEEee
Q 035870 697 YDRIISCEMIEAVGHEF--MEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~--~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
||+|++......-+.+. ..+++++++++|||||.++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99999975532111111 37899999999999999999754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-12 Score=130.39 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH-HHcCCCCCeEEE--EccccCCc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV-KEAGLQDLIRLY--LCDYRQLA 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~-~~~~l~~~v~~~--~~d~~~~~ 692 (842)
.|+..++++..++++.+|||||||+|.++..+++. .+|+|+|+|+ ++..++++. .......++.++ ++|+.+++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP 137 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence 34556666656788999999999999999999987 6999999998 533322110 000011168999 99999887
Q ss_pred cCCCccEEEEcchhhhcChhh---H--HHHHHHHHhccccCc--EEEEEeec
Q 035870 693 KANKYDRIISCEMIEAVGHEF---M--EEFFGCCESLLAEDG--LLVLQFIS 737 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~---~--~~~~~~~~~~LkpgG--~~~~~~~~ 737 (842)
+++||+|+|..+ ++.++.. . ..+++.+.++||||| .+++..+.
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 578999999876 4443311 1 137899999999999 99987655
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=130.32 Aligned_cols=108 Identities=21% Similarity=0.221 Sum_probs=91.2
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc-----CCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-----ANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-----~~~fD~i~s~ 703 (842)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.++++ +++++++|+.+..+ .++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7889999999999999999998 789999999999999999999999987 49999999877641 5789999996
Q ss_pred chhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 704 EMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 704 ~~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
......+. +.+..++..+.++|||||.+++.+...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 54322111 346789999999999999999977543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=125.05 Aligned_cols=109 Identities=24% Similarity=0.309 Sum_probs=84.4
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEccccCC-c-cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKE--AGL-QDLIRLYLCDYRQL-A-KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~-~-~~~~fD~i~ 701 (842)
.++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++.. .++ .++++++++|+.+. + .+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999987 457999999999999999998764 333 35899999998764 2 357899999
Q ss_pred EcchhhhcChh---hHHHHHHHHHhccccCcEEEEEee
Q 035870 702 SCEMIEAVGHE---FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 702 s~~~~~~~~~~---~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+...-.+++.. ...+++++++++|||||.++++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 86432212210 237899999999999999999753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-11 Score=125.70 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=86.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA--GL-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
.++.+|||||||+|.++..+++. +..+|+++|+|+++++.|++++... ++ .++++++.+|+.+.. .+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35679999999999999999987 4579999999999999999987542 34 358999999987642 347899999
Q ss_pred EcchhhhcChh--hHHHHHHHHHhccccCcEEEEEee
Q 035870 702 SCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 702 s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+.......+.. ...+++++++++|||||.++++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 96543221111 126899999999999999999753
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=126.13 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=89.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
.++.+|||+|||+|.+++. ++ .+.+|+++|+|+.+++.|+++++.+++.++++++++|+.+.. ++||+|+++....
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence 5789999999999999999 87 478999999999999999999999999778999999999887 7999999975322
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
...+++.+.++|+|||.+++.++...
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 23788899999999999999776543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-11 Score=137.27 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=90.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc--cCCCccEEEEcch
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA--KANKYDRIISCEM 705 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~--~~~~fD~i~s~~~ 705 (842)
+|.+|||+|||+|.+++.+++....+|+++|+|+.+++.|+++++.+++. ++++++++|+.+.. ..++||+|++...
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 68899999999999999999873346999999999999999999999997 68999999988743 4578999999764
Q ss_pred h-----------hhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 706 I-----------EAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 706 ~-----------~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
. .+. +.+..+++.+.++|||||++++....
T Consensus 619 ~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2 222 34788999999999999999986543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=121.53 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++++++|+.+++. +
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-P 105 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-C
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-c
Confidence 44567788888889999999999999999999987 78999999999999999999988777 489999999988764 4
Q ss_pred CccEEEEcchhhhcChhhHHHHH---------------HHHHhccccCcE
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFF---------------GCCESLLAEDGL 730 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~---------------~~~~~~LkpgG~ 730 (842)
+||+|+++...+.. ......++ +.+.|+++|+|.
T Consensus 106 ~~D~Vv~n~py~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 106 KFDVCTANIPYKIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp CCSEEEEECCGGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred cCCEEEEcCCcccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 89999998665433 22233333 346678888773
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=124.35 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=93.7
Q ss_pred HHHHHHc-CCCCCCeEEEeccCchHHHHHHHHhc-C-----CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 619 SLLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKRT-G-----CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 619 ~~l~~~l-~~~~~~~vLDiGcG~G~~~~~la~~~-~-----~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
..++..+ ...++.+|||+|||+|.++..+++.. . .+++|+|+|+.+++.|+.++...|+ +++++++|....
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~ 196 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN 196 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc
Confidence 3344443 44577899999999999999998873 2 7899999999999999999988887 589999998765
Q ss_pred ccCCCccEEEEcchhhhcChhhH----------------HHHHHHHHhccccCcEEEEEee
Q 035870 692 AKANKYDRIISCEMIEAVGHEFM----------------EEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 ~~~~~fD~i~s~~~~~~~~~~~~----------------~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
...++||+|+++..+.+++.+.. ..+++++.+.|||||++++...
T Consensus 197 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 197 LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 45578999999998776643221 2689999999999999988653
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=114.46 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=80.5
Q ss_pred HHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcC----------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-E
Q 035870 618 VSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTG----------CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLY-L 685 (842)
Q Consensus 618 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~-~ 685 (842)
+..+.+... ++++.+|||||||+|.++..+++..+ .+|+|+|+|+.+ .+ .+++++ .
T Consensus 10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~ 77 (196)
T 2nyu_A 10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCP 77 (196)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECS
T ss_pred HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEe
Confidence 334444444 57899999999999999999999843 799999999842 22 368999 9
Q ss_pred ccccCCc---------cCCCccEEEEcchhhhcChh--h-------HHHHHHHHHhccccCcEEEEEeec
Q 035870 686 CDYRQLA---------KANKYDRIISCEMIEAVGHE--F-------MEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 686 ~d~~~~~---------~~~~fD~i~s~~~~~~~~~~--~-------~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+|+.+.. ++++||+|+|..+++..+.. + ...+++++.++|||||++++..+.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9976643 23589999997655433211 0 147899999999999999997653
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-10 Score=124.92 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccChHH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
....+.+.|.+.+++.|++|+++++|++|..++++ +.|++.+|+++.||.||+|+....
T Consensus 132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 35688899999999999999999999999987777 789999997799999999987653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=122.57 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cC--------------------------------------CEEEE
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TG--------------------------------------CKYTG 657 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~g 657 (842)
....++......++.+|||.+||+|.+++.+|.. .+ .+|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3346777888889999999999999999999876 22 46999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh-hcCh-hhHHHHHHHHHhcccc--CcEEEE
Q 035870 658 ITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE-AVGH-EFMEEFFGCCESLLAE--DGLLVL 733 (842)
Q Consensus 658 id~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~-~~~~-~~~~~~~~~~~~~Lkp--gG~~~~ 733 (842)
+|+|+.+++.|+++++.+|+.++++++++|+.+++..++||+|+++..+. .+++ +.+..+++.+.+.||+ ||.+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999999999999888999999999988556999999997642 2322 3456677777777776 888887
Q ss_pred Eee
Q 035870 734 QFI 736 (842)
Q Consensus 734 ~~~ 736 (842)
.+.
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.3e-10 Score=119.33 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=98.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cC--------------------------------------CEEEEE
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TG--------------------------------------CKYTGI 658 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~gi 658 (842)
...|+.....+++..|||.+||+|.+++.+|.. .+ .+|+|+
T Consensus 183 Aaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv 262 (384)
T 3ldg_A 183 AAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF 262 (384)
T ss_dssp HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 345677788889999999999999999999875 22 469999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh-hcC-hhhHHHHHHHHHhcccc--CcEEEEE
Q 035870 659 TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE-AVG-HEFMEEFFGCCESLLAE--DGLLVLQ 734 (842)
Q Consensus 659 d~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~-~~~-~~~~~~~~~~~~~~Lkp--gG~~~~~ 734 (842)
|+|+.+++.|+++++.+|+.++++++++|+.+++..++||+|+++..+. -++ .+....+++++.+.||+ ||.+++.
T Consensus 263 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9999999999999999999888999999999988556999999997653 233 24567788888888876 8888875
Q ss_pred ee
Q 035870 735 FI 736 (842)
Q Consensus 735 ~~ 736 (842)
+.
T Consensus 343 t~ 344 (384)
T 3ldg_A 343 TN 344 (384)
T ss_dssp ES
T ss_pred EC
Confidence 43
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7e-10 Score=121.87 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=83.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+.++.+|||+|||+|.++..+|+. +.+|+|+|+|+++++.|+++++.+++. ++++++|+.++.+. +||+|++...-
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~fD~Vv~dPPr 363 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-GFDTVIVDPPR 363 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-TCSEEEECCCT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-CCCEEEEcCCc
Confidence 467889999999999999999987 789999999999999999999998885 99999999988643 89999997664
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.... ..+++.+. .|+|+|.++++.
T Consensus 364 ~g~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 364 AGLH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred cchH----HHHHHHHH-hcCCCcEEEEEC
Confidence 3222 34556555 489999999853
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=122.52 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cC--------------------------------------CEEEE
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TG--------------------------------------CKYTG 657 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~g 657 (842)
....|+......++.+|||++||+|.+++.+|.. .+ .+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 3345777788889999999999999999999876 11 57999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh-hcC-hhhHHHHHHHHHhcccc--CcEEEE
Q 035870 658 ITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE-AVG-HEFMEEFFGCCESLLAE--DGLLVL 733 (842)
Q Consensus 658 id~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~-~~~-~~~~~~~~~~~~~~Lkp--gG~~~~ 733 (842)
+|+|+.+++.|++++..+|+.+++++.++|+.+++..++||+|+++..+. .++ .+....+++++.+.||+ |+.+++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 99999999999999999999888999999999988557999999998753 333 23467788888888876 888877
Q ss_pred Ee
Q 035870 734 QF 735 (842)
Q Consensus 734 ~~ 735 (842)
.+
T Consensus 343 it 344 (385)
T 3ldu_A 343 IT 344 (385)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-10 Score=122.91 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=98.5
Q ss_pred CCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH
Q 035870 593 DESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKV 672 (842)
Q Consensus 593 ~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~ 672 (842)
+..+.++.+.|-..... .....++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++
T Consensus 253 g~~~~~~~~~f~q~n~~---~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~ 328 (433)
T 1uwv_A 253 GLRLTFSPRDFIQVNAG---VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNA 328 (433)
T ss_dssp TEEEECCSSSCCCSBHH---HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECcccccccCHH---HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHH
Confidence 33444555444332211 22345567777788888899999999999999999998 889999999999999999999
Q ss_pred HHcCCCCCeEEEEccccCC----c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 673 KEAGLQDLIRLYLCDYRQL----A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 673 ~~~~l~~~v~~~~~d~~~~----~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.+++. +++++++|+.+. + .+++||+|+++....-. ..+++.+.+ ++|++.++++
T Consensus 329 ~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 329 RLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp HHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEE
T ss_pred HHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEE
Confidence 999987 899999998873 2 34689999997654322 244555544 7898888874
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=119.87 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++ ++|+++++|++|+.++++|.|++.+|+++.||.||.|....
T Consensus 128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 180 (407)
T 3rp8_A 128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSH 180 (407)
T ss_dssp HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTT
T ss_pred HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcC
Confidence 566777777765 89999999999999999999999999999999999997643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=118.87 Aligned_cols=99 Identities=16% Similarity=-0.005 Sum_probs=82.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEccccCCccCCCccEEEEcc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKE--AGL-QDLIRLYLCDYRQLAKANKYDRIISCE 704 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~--~~l-~~~v~~~~~d~~~~~~~~~fD~i~s~~ 704 (842)
+.+.+|||||||+|.++..+++. +.+|+++|+|+++++.|++++.. .++ .++++++.+|..+.. ++||+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECC
Confidence 45679999999999999999988 58999999999999999987532 112 248999999998876 7899999862
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+ +..+++.++++|||||.++++..
T Consensus 148 -----~d--p~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 148 -----EP--DIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp -----CC--CHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -----CC--hHHHHHHHHHhcCCCcEEEEEcC
Confidence 22 34589999999999999999743
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=113.28 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
..++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+|+++++.+++++... ++++++++|+.+++ ++
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNK 112 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCccc
Confidence 45678889999999999999999999999999998 889999999999999999998743 38999999999877 55
Q ss_pred CCccEEEEcchhh
Q 035870 695 NKYDRIISCEMIE 707 (842)
Q Consensus 695 ~~fD~i~s~~~~~ 707 (842)
.+||+|+++..++
T Consensus 113 ~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 113 LDFNKVVANLPYQ 125 (295)
T ss_dssp SCCSEEEEECCGG
T ss_pred CCccEEEEeCccc
Confidence 6899999986544
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=127.45 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-C
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--------------TGCKYTGITLSEEQLKYAEMKVKEAGLQD-L 680 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--------------~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~ 680 (842)
..++.|++.+...++.+|||.|||+|.++..+++. .+.+++|+|+++.+++.|+.++...|+.. +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 34556777777788999999999999999998875 24689999999999999999998888753 6
Q ss_pred eEEEEccccCCccCCCccEEEEcchhhhcChh---------------hHHHHHHHHHhccccCcEEEEEee
Q 035870 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVGHE---------------FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 681 v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~---------------~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+++.++|....+..++||+|+++..+.+.... ....+++.+.++|||||++++...
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 78999998877644589999999887764321 124789999999999999988653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-11 Score=123.65 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcC----CHHHHHHHHHHHHHcCCCCCeEEEEc-cccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITL----SEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQL 691 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~----s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~ 691 (842)
|+..+.++..++++.+|||||||+|.++..+++. .+|+|+|+ ++.+++.+. .+..+. ++|+++++ |+.++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l 144 (305)
T 2p41_A 70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI 144 (305)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS
T ss_pred HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC
Confidence 3445555544678999999999999999999987 58999999 564442211 111121 37999999 98887
Q ss_pred ccCCCccEEEEcchhh---hcChhh-HHHHHHHHHhccccCcEEEEEeecC
Q 035870 692 AKANKYDRIISCEMIE---AVGHEF-MEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 692 ~~~~~fD~i~s~~~~~---~~~~~~-~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+ .++||+|+|..++. +..+.. ...+++.+.++|||||.+++..+..
T Consensus 145 ~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 145 P-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp C-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred C-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 5 46899999976653 211110 1157899999999999999865543
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-09 Score=117.09 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC----CCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA----DKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~----~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
....+.+.|.+.+++.|++|+++++|++|..+ ++++.|++.+| ++.||.||+|+...
T Consensus 107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~ 167 (401)
T 2gqf_A 107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGL 167 (401)
T ss_dssp CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCc
Confidence 45678888999998899999999999999987 66789988877 79999999998654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-09 Score=110.19 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=90.4
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC----
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA---- 694 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---- 694 (842)
+...+.+++|++|||+|||+|+.+.++|+. ...+|+++|+|+.+++.++++++..|+. +++++++|+.++...
T Consensus 94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 172 (309)
T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRY 172 (309)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGG
T ss_pred HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCcccccc
Confidence 345667889999999999999999999986 2479999999999999999999999985 799999999887621
Q ss_pred CCccEEEEc------chhhhcCh---------h-------hHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 695 NKYDRIISC------EMIEAVGH---------E-------FMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 695 ~~fD~i~s~------~~~~~~~~---------~-------~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
++||.|++. +++..-++ + ...++++.+.++|+ ||+++..+++..
T Consensus 173 ~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 173 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 579999973 23322111 1 12356778888887 999998887754
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6e-10 Score=113.45 Aligned_cols=85 Identities=22% Similarity=0.360 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K- 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~- 693 (842)
...+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.+++++... ++++++++|+.+++ +
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence 45567888888889999999999999999999998 689999999999999999987542 48999999999887 3
Q ss_pred CCCccEEEEcch
Q 035870 694 ANKYDRIISCEM 705 (842)
Q Consensus 694 ~~~fD~i~s~~~ 705 (842)
...| .|+++..
T Consensus 93 ~~~~-~vv~nlP 103 (244)
T 1qam_A 93 NQSY-KIFGNIP 103 (244)
T ss_dssp SCCC-EEEEECC
T ss_pred CCCe-EEEEeCC
Confidence 2455 5666643
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-09 Score=115.67 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+. |++|+++++|++|+.++++|.|++.+|+++.||.||.|....
T Consensus 100 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 152 (397)
T 2vou_A 100 SIYGGLYELFG--PERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 152 (397)
T ss_dssp HHHHHHHHHHC--STTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred HHHHHHHHhCC--CcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcc
Confidence 34445555553 889999999999999999999999999899999999997654
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=119.22 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=34.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||+||+.|+++|++|+|||+++.+|..
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~ 42 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP 42 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence 7999999999999999999999999999998887753
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-10 Score=125.21 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+++++|++|..+++++ .|++.+|+++.||.||+|+....
T Consensus 220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 4678888888888899999999999999988875 58899998999999999987653
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-09 Score=127.81 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...++..|++.++++|++|+++++|++|..+++++ .|++.+| ++.||+||+|+..+.
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 45799999999999999999999999999988876 6888887 799999999998875
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=120.34 Aligned_cols=50 Identities=22% Similarity=0.164 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEeCCCcEEeCCEEEEccC
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~A~p 268 (842)
.|-+.|.+.+ +.+|+++++|++++..++ +|+|+++||++++||.||-|-.
T Consensus 113 ~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG 163 (412)
T 4hb9_A 113 ELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADG 163 (412)
T ss_dssp HHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCC
T ss_pred HHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCC
Confidence 3555566655 568999999999988655 5999999999999999999954
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-09 Score=123.42 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE---EEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC---TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v---~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++.|++|+++++|++|..++ ++| .+...+|+ ++.||.||+|+..+
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~ 316 (571)
T 1y0p_A 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF 316 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence 5788999999999999999999999999876 553 34443676 68999999998754
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=122.86 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE---EEEeCCCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC---TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v---~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
...+.+.|.+.+++.|++|+++++|++|..++ ++| .+.+.+|+ ++.||.||+|+...
T Consensus 249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~ 311 (566)
T 1qo8_A 249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY 311 (566)
T ss_dssp HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCc
Confidence 45788999999999999999999999999887 654 33334775 68999999998754
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=123.04 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCC---C--cEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGD---G--SREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~---G--~~~~ad~VV~A~p~~~ 271 (842)
...++..|++.+.++|++|+.+++|++|..+++++ .|++.+ | .++.||.||+|+.++.
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 46799999999999999999999999999988874 466543 3 3689999999998774
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=119.89 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCc--EEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~--~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+++.|++|+++++|++|..++++ +.|.+.+|+ ++.||.||.|+....
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 56677778887789999999999999998776 467778887 699999999987553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=111.35 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEecc------CchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE-EEccccCCccCC
Q 035870 625 ARVSKGQEVLEIGC------GWGTLAIEIVKR-T-GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRL-YLCDYRQLAKAN 695 (842)
Q Consensus 625 l~~~~~~~vLDiGc------G~G~~~~~la~~-~-~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~-~~~d~~~~~~~~ 695 (842)
+.++++++|||+|| |+|. ..+++. + +.+|+|+|+|+. + .++++ +++|+.+++..+
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~~ 122 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTAN 122 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCSS
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCccC
Confidence 45789999999999 4477 444555 3 579999999997 1 26889 999999887447
Q ss_pred CccEEEEcchhhhc---------ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 696 KYDRIISCEMIEAV---------GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 696 ~fD~i~s~~~~~~~---------~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+||+|+|+...+.. ..+.+..+++++.++|||||++++..+.
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 89999997432211 0123568999999999999999996543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=122.11 Aligned_cols=111 Identities=20% Similarity=0.327 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
..+.+++.+...++.+|||+|||+|.++..++++ .+.+++|+|+++.+++.| .+++++++|+.+..+.
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~ 96 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG 96 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc
Confidence 4456677776666779999999999999999987 468999999999998877 3799999999888766
Q ss_pred CCccEEEEcchhhhc----------Chhh-----------------HHHHHHHHHhccccCcEEEEEeec
Q 035870 695 NKYDRIISCEMIEAV----------GHEF-----------------MEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~----------~~~~-----------------~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++||+|+++..+... .++. ...+++.+.++|||||++++....
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 799999998554322 1211 236789999999999999886543
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=116.21 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE--EEEeCCCcEEeCCEEEEccChHH-HHHhhc
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC--TIVCGDGSREFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v--~V~~~~G~~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
.+.+.|.+.+++. |++|+++++|++|+.++++| .|++.+|+++.||.||.|..... +.+.+.
T Consensus 108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg 173 (399)
T 2x3n_A 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL 173 (399)
T ss_dssp HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTS
T ss_pred HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhC
Confidence 6777888888887 89999999999999998898 89999998999999999987543 344554
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=112.19 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=84.8
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCH-------HHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSE-------EQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~-------~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
+.+.+...++.+|||+|||+|.+++.+|+. +++|+++|+|+ ++++.|+++++.+++.++++++++|+.++.
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP 153 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH
Confidence 344445567889999999999999999997 88999999999 999999999888777667999999988753
Q ss_pred --cC--CCccEEEEcchhhhcCh------------------hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 693 --KA--NKYDRIISCEMIEAVGH------------------EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 --~~--~~fD~i~s~~~~~~~~~------------------~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++ ++||+|++..++.+... .+.+.+++.+.++.+. ++++....
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~ 218 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPR 218 (258)
T ss_dssp HHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEET
T ss_pred hhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCC
Confidence 23 68999999887766421 1244555666666543 56665443
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.3e-09 Score=116.40 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc---EEeCCEEEEccChHH-HHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS---REFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~---~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
.+.+.|.+.+++.|++|+++++|++|+.++++|.|++.+|. +++||.||.|..... +.+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 173 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence 56666777777779999999999999999999999887775 799999999976543 444543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=120.13 Aligned_cols=137 Identities=17% Similarity=0.258 Sum_probs=101.0
Q ss_pred CChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCC----CCCCeEEEeccCchHH---HHHHHHhcCC--
Q 035870 583 LSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV----SKGQEVLEIGCGWGTL---AIEIVKRTGC-- 653 (842)
Q Consensus 583 ~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~---~~~la~~~~~-- 653 (842)
+.+.-|+.|-.....| ...|+...+.+.++... ..+..|||||||+|.+ +..++++.+.
T Consensus 319 L~s~tYevFEkD~vKy------------~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~v 386 (637)
T 4gqb_A 319 LESQTYEVFEKDPIKY------------SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRI 386 (637)
T ss_dssp CCHHHHHHHTTCHHHH------------HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhhhhhhhcCChhhH------------HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCc
Confidence 4455666655444444 23333343444444322 2345799999999998 5555555444
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 654 KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 654 ~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
+|++||.|+ +...|++..+++++.++|+++.+|++++...+++|+|||-.|-..+-.|...+.+....|.|||||.++
T Consensus 387 kVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 387 KLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 789999997 677899999999999999999999999985589999999777655555667788899999999999875
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.2e-09 Score=113.42 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH-HHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
.+.+.|.+.+++.|++|+++++|++|+. ++ .|++.+|+++.||.||.|..... +.+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~ 167 (379)
T 3alj_A 108 HLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKVRDSIG 167 (379)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence 6677777888778999999999999987 44 88888998999999999987543 334443
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=121.73 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=41.7
Q ss_pred HHHHHHhhhcCc--eEEeCCCeeEEEeCCC--cEEEEeCCCcEEeCCEEEEccChH
Q 035870 219 NKVRKQLESWGC--QIRTSSEVCSVLPADK--GCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 219 ~~L~~~l~~~G~--~i~~~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+++.|. +|+++++|++++.+++ +|.|++.+|+++.||.||+|+...
T Consensus 91 ~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~ 146 (540)
T 3gwf_A 91 EYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLL 146 (540)
T ss_dssp HHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCccc
Confidence 334444444476 8999999999998766 689999999889999999999853
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=116.00 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc---EEeCCEEEEccChHH-HHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS---REFYNSCVMALHAPD-ALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~---~~~ad~VV~A~p~~~-~~~ll~ 277 (842)
.+.+.|.+.+++.|++|+++++|++|+.++++|.|++.+|. +++||.||.|..... +.+.+.
T Consensus 107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 172 (500)
T 2qa1_A 107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG 172 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence 56666777777779999999999999999999988887764 799999999976543 444543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-09 Score=113.10 Aligned_cols=110 Identities=8% Similarity=0.155 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--- 692 (842)
..+..+++.+... +.+|||+|||+|.+++.+|+. ..+|+|+|+|+++++.|+++++.+++. +++++++|+.++.
T Consensus 201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~~ 277 (369)
T 3bt7_A 201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAM 277 (369)
T ss_dssp HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHHH
Confidence 4556667776654 578999999999999999986 679999999999999999999999985 8999999987653
Q ss_pred cC--------------CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KA--------------NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~--------------~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.. .+||+|+....-.- +..++.+.|+|+|++++.++
T Consensus 278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 278 NGVREFNRLQGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp SSCCCCTTGGGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEES
T ss_pred hhccccccccccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEEC
Confidence 11 37999998654322 23345666778888887654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-09 Score=107.36 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
..++.+++.+++.++ +|||||||+|.++..+++. +.+|+++|+|+++++.+++++.. ++++++++|+.+++ ++
T Consensus 34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~ 107 (271)
T 3fut_A 34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEE 107 (271)
T ss_dssp HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGG
T ss_pred HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhh
Confidence 455688899999999 9999999999999999998 78999999999999999998752 48999999998887 32
Q ss_pred -CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 695 -NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 695 -~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+|.|++|.... ++..-+..++.. ..-+.+.++++
T Consensus 108 ~~~~~~iv~NlPy~-iss~il~~ll~~---~~~~~~~lm~Q 144 (271)
T 3fut_A 108 VPQGSLLVANLPYH-IATPLVTRLLKT---GRFARLVFLVQ 144 (271)
T ss_dssp SCTTEEEEEEECSS-CCHHHHHHHHHH---CCEEEEEEEEE
T ss_pred ccCccEEEecCccc-ccHHHHHHHhcC---CCCCEEEEEee
Confidence 3789999987644 443223333433 11235556554
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=122.12 Aligned_cols=39 Identities=33% Similarity=0.493 Sum_probs=36.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||||++||+||+.|++.|++|+|+|+++.+||...
T Consensus 23 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~ 61 (549)
T 4ap3_A 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWY 61 (549)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred CEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence 799999999999999999999999999999999998543
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-08 Score=115.46 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEEeC-CCc--EEeCC-EEEEccChH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIVCG-DGS--REFYN-SCVMALHAP 270 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~~-~G~--~~~ad-~VV~A~p~~ 270 (842)
|...+.+.|.+.+++.|++|+++++|++|..+ +++| .|.+. +|+ ++.|| .||+|+...
T Consensus 200 g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~ 263 (510)
T 4at0_A 200 GGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSF 263 (510)
T ss_dssp TTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCCh
Confidence 33489999999999999999999999999998 4554 34443 333 58996 999998754
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=108.01 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K- 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~- 693 (842)
..++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+|+++++.+++++.. .++++++++|+.+++ +
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHH
Confidence 45567889999999999999999999999999998 78999999999999999999865 248999999998886 2
Q ss_pred ---CCCccEEEEcchh
Q 035870 694 ---ANKYDRIISCEMI 706 (842)
Q Consensus 694 ---~~~fD~i~s~~~~ 706 (842)
.++|| |++|...
T Consensus 92 ~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPY 106 (255)
T ss_dssp SCCSSCEE-EEEECCH
T ss_pred hccCCCeE-EEecCCc
Confidence 35688 7777654
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=112.54 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.++ +++|+++++|++|+.++++|.|++.+|+++.||.||.|....
T Consensus 129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 181 (398)
T 2xdo_A 129 DLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGM 181 (398)
T ss_dssp HHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTT
T ss_pred HHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcc
Confidence 45666777665 368999999999999988999999999889999999998754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-09 Score=115.50 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=86.2
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEccccCCcc---CCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TG-CKYTGITLSEEQLKYAEMKVKEAGLQDL-IRLYLCDYRQLAK---ANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~-v~~~~~d~~~~~~---~~~fD~i~ 701 (842)
+++.+|||++||+|.+++.++++ .| .+|+++|+|+++++.++++++.++++++ ++++++|+.++.. .++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 57889999999999999999986 34 5899999999999999999999999866 9999999865432 35899999
Q ss_pred EcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 702 SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 702 s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
... . +. ...++..+.++|+|||.+++..
T Consensus 131 lDP-~---g~--~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GT--PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cC--HHHHHHHHHHHhCCCCEEEEEe
Confidence 976 1 21 3568888999999999888865
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-09 Score=112.61 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=84.9
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc---------------CCCCCeEEEEccccCCc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA---------------GLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~---------------~l~~~v~~~~~d~~~~~ 692 (842)
++.+|||+|||+|.+++.++++ .+.+|+++|+|+++++.++++++.+ ++. +++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence 6889999999999999999998 5579999999999999999999998 876 4999999987765
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..++||+|+.... . . ...++..+.+.|||||.+++..
T Consensus 126 ~~~~~~fD~I~lDP~-~---~--~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDPF-G---S--PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECCS-S---C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCCC-C---C--HHHHHHHHHHhcCCCCEEEEEe
Confidence 2358999997542 1 1 3578888999999999888754
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=119.70 Aligned_cols=61 Identities=18% Similarity=0.010 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC----cEEEEeCCC---cEEeCCEEEEccChHH-HHHhh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK----GCTIVCGDG---SREFYNSCVMALHAPD-ALKIL 276 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~----~v~V~~~~G---~~~~ad~VV~A~p~~~-~~~ll 276 (842)
.+...|.+.+++.|++|+++++|++|+.+++ +|.|++.++ .+++||.||.|..... +.+.+
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l 189 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESL 189 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence 5667788888888999999999999999988 888888776 6899999999986543 34444
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=114.90 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcEEEEeC-CC--cEEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGCTIVCG-DG--SREFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v~V~~~-~G--~~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+++.|++|+.+++|++|..+ ++.+.|++. +| .++.||.||.|+....
T Consensus 129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 56777888888889999999999999986 455788876 67 5799999999987553
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-09 Score=113.10 Aligned_cols=55 Identities=9% Similarity=-0.024 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcEEEEe-CCCc--EEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGCTIVC-GDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v~V~~-~~G~--~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+.+.|++|+++++|++|..++ +++.|++ .+|+ ++.||.||.|....
T Consensus 104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~ 162 (394)
T 1k0i_A 104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (394)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 455667777777799999999999999864 5678877 6887 69999999998654
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=119.45 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe--CCC-cEEeCCEEEEccChH-HHHHhhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC--GDG-SREFYNSCVMALHAP-DALKILG 277 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~--~~G-~~~~ad~VV~A~p~~-~~~~ll~ 277 (842)
.+.+.|.+.+++.|++|+++++|++|+.++++|.|++ .+| ++++||.||.|.... .+.+.+.
T Consensus 149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG 214 (570)
T 3fmw_A 149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA 214 (570)
T ss_dssp HHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence 5666777777777999999999999999999988877 788 689999999997644 3444543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=101.34 Aligned_cols=172 Identities=12% Similarity=0.141 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCCC-----CCeEEEeccCchHHHHHHHHh----------------cCCEEEEEcCCHHHHHHHHHHHHH
Q 035870 616 RKVSLLIEKARVSK-----GQEVLEIGCGWGTLAIEIVKR----------------TGCKYTGITLSEEQLKYAEMKVKE 674 (842)
Q Consensus 616 ~~~~~l~~~l~~~~-----~~~vLDiGcG~G~~~~~la~~----------------~~~~v~gid~s~~~~~~a~~~~~~ 674 (842)
..++..++.+...+ ..+|+|+|||+|..+..++.. +..+|...|+........=+.+..
T Consensus 34 ~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 34 HLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 34455556665543 579999999999999887322 235677777665554333222221
Q ss_pred cC-----------CCCCeEEEEcc----ccCCccCCCccEEEEcchhhhcCh----------------------------
Q 035870 675 AG-----------LQDLIRLYLCD----YRQLAKANKYDRIISCEMIEAVGH---------------------------- 711 (842)
Q Consensus 675 ~~-----------l~~~v~~~~~d----~~~~~~~~~fD~i~s~~~~~~~~~---------------------------- 711 (842)
.. ...+-.|..+. |..+-++++||+|+|+.++|++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~ 193 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTT 193 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHH
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHH
Confidence 10 00011122222 122226789999999999999862
Q ss_pred --------hhHHHHHHHHHhccccCcEEEEEeecCCCcc-cc----------cc-------cC----ccchhhhcccCCC
Q 035870 712 --------EFMEEFFGCCESLLAEDGLLVLQFISIPDER-YN----------EY-------RL----SSDFIKEYIFPGG 761 (842)
Q Consensus 712 --------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~-~~----------~~-------~~----~~~~~~~~i~p~~ 761 (842)
+++..+|+..++.|+|||++++.....++.. +. .. .. ...++..+-.| -
T Consensus 194 ~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P-~ 272 (374)
T 3b5i_A 194 TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP-V 272 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC-B
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc-c
Confidence 1466789999999999999999988776532 11 00 00 01112222334 3
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 762 CLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 762 ~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.|+.+++...+++..||++..++.+.
T Consensus 273 y~ps~~E~~~~l~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 273 YAPSLQDFKEVVDANGSFAIDKLVVYK 299 (374)
T ss_dssp CCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence 568999999999866899999987653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.2e-09 Score=109.69 Aligned_cols=86 Identities=30% Similarity=0.433 Sum_probs=74.3
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---c
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---K 693 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~ 693 (842)
++.+++.+.++++.+|||+|||+|+++..+++. ++.+|+|+|+|+++++.|+++++..+ ++++++++|+.+++ .
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHH
Confidence 346777888889999999999999999999998 46899999999999999999998877 48999999998875 1
Q ss_pred C---CCccEEEEcch
Q 035870 694 A---NKYDRIISCEM 705 (842)
Q Consensus 694 ~---~~fD~i~s~~~ 705 (842)
. .+||.|++...
T Consensus 93 ~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 93 TLGIEKVDGILMDLG 107 (301)
T ss_dssp HTTCSCEEEEEEECS
T ss_pred hcCCCCCCEEEEcCc
Confidence 1 58999998653
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=112.98 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=47.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCe-EEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVE-VVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~-V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
+||+|||||++||++|+.|++.|++ |+|+|+.+.++..... .. ..++..++++++|+....
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g------------~~----l~~~~~~~l~~lg~~~~l 66 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVG------------IN----IQPAAVEALAELGLGPAL 66 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCE------------EE----ECHHHHHHHHHTTCHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeE------------EE----EChHHHHHHHHCCChHHH
Confidence 3899999999999999999999999 9999998876542111 11 245777888999875443
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=114.76 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc---EEEEeCCCc--EEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKG---CTIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~---v~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++|+++++|++|..++++ |.+.+.+|+ ++.||.||.|+...
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~ 171 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNR 171 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcc
Confidence 56777888887889999999999999998875 455566784 79999999998764
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-08 Score=111.69 Aligned_cols=58 Identities=12% Similarity=-0.052 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe---CCCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
...++..|++.+.++|++|+.+++|++|..+++.+.|++ .+|+ ++.||.||+|+.++.
T Consensus 148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 568999999999999999999999999998876677777 3575 789999999998874
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=110.86 Aligned_cols=54 Identities=6% Similarity=-0.034 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.+.+.+++.|++++++++|++|..+++++. |++.+| ++.||+||+|+...
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 77 EVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence 3444455555666999999999999999999998 999888 89999999999854
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=117.11 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcE---EEEeCCCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGC---TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v---~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
...+.+.|.+.+++.|++|+++++|++|..++ ++| .+.+.+|+ ++.||.||+|+...
T Consensus 254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~ 316 (572)
T 1d4d_A 254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF 316 (572)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCC
Confidence 35788999999999999999999999998876 553 33334675 58999999998754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=114.60 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=81.7
Q ss_pred CCeEEEeccCchHHHH---HHHHhcC-----------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc--
Q 035870 630 GQEVLEIGCGWGTLAI---EIVKRTG-----------CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-- 693 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~---~la~~~~-----------~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-- 693 (842)
+..|||||||+|.++. .+++..+ .+|++||.|+.+....+++.. +++.++|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 4589999999999964 3333212 399999999987776666654 7899899999999999873
Q ss_pred ----CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEE
Q 035870 694 ----ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 694 ----~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
.++.|+|||-.|-.....|..++.+..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 689999999877655555667889999999999999866
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=108.69 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+.+++.|+++++ ++|++|..+++.+.|++.+|+++.+|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~ 124 (323)
T 3f8d_A 72 MIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK 124 (323)
T ss_dssp HHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred HHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence 333445555566889999 99999999988899999998899999999998754
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-08 Score=104.12 Aligned_cols=38 Identities=42% Similarity=0.651 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHhC-CCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKA-GVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~-G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++. |.+|+|+|+.+.+||.+
T Consensus 41 dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~ 79 (284)
T 1rp0_A 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA 79 (284)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred CEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence 799999999999999999997 99999999999888743
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=116.17 Aligned_cols=38 Identities=39% Similarity=0.555 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus 18 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w 55 (542)
T 1w4x_A 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW 55 (542)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 79999999999999999999999999999999999854
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.2e-08 Score=111.39 Aligned_cols=58 Identities=7% Similarity=-0.092 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeC---CCc--EEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCG---DGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~~~ad~VV~A~p~~~ 271 (842)
...++..+++.+.+.|++|+.+++|++|..+++++ .|++. +|+ ++.||.||+|+.++.
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 45788889999989999999999999999988764 45542 333 699999999998874
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=109.66 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEeCCCcEEeCCEEEEccCh
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+.+.+.+++.|++++++++|++|..+++ .+.|++.+|+ +.+|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~ 121 (332)
T 3lzw_A 68 ELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN 121 (332)
T ss_dssp HHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred HHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence 3444555666666899999999999999877 6899999885 999999999876
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=108.80 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+.+.+.+++.+.+++++++|++|+.+++.+.|++.+|+++.+|+||+|+..
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~ 119 (335)
T 2zbw_A 67 LVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGV 119 (335)
T ss_dssp HHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCC
Confidence 33344555556688999999999999988788999988888999999999875
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-08 Score=112.72 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeC---CCcEEEEe--C-CC--cEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPA---DKGCTIVC--G-DG--SREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~---~~~v~V~~--~-~G--~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++|+++++|++|..+ ++++.|++ . +| +++.||.||+|+...
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~ 229 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK 229 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence 45566777777779999999999999875 34577776 4 66 478999999998765
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=112.64 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|+..++++.|.+.+| ++.||.||+|++.
T Consensus 188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~ 242 (452)
T 3oc4_A 188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL 242 (452)
T ss_dssp CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC
Confidence 356788889999999999999999999998888888888877 8999999999874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-08 Score=95.51 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=79.8
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEccccCC---------------
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--QDLIRLYLCDYRQL--------------- 691 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--~~~v~~~~~d~~~~--------------- 691 (842)
+.++||||||| ..++.+|+..+.+|+.+|.+++..+.|+++++++|+ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 56799999985 677778875578999999999999999999999998 78999999996432
Q ss_pred c----------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 A----------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 ~----------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+ ..++||+|+.-.-. ...++..+.++|+|||++++..+
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeCC
Confidence 1 23789999987531 24666667799999999988554
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.7e-09 Score=118.57 Aligned_cols=38 Identities=34% Similarity=0.663 Sum_probs=36.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++.|++|+|+|+++.+||..
T Consensus 11 dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw 48 (545)
T 3uox_A 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW 48 (545)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 79999999999999999999999999999999999953
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-08 Score=111.91 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+++.||.||+|++.
T Consensus 232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 4677888888888899999999999999988889999999989999999999874
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-08 Score=112.65 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=96.5
Q ss_pred hcCChHHHHhccCCCCc---ccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc------
Q 035870 581 YDLSNELFSLFLDESMT---YSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT------ 651 (842)
Q Consensus 581 Yd~~~~~~~~~l~~~~~---ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~------ 651 (842)
.|...+.|+.++..... -..+.|-++ ....+.|++.+...++.+|||.+||+|.+...+++..
T Consensus 126 ~d~lG~~YE~ll~~~a~~~~~~~G~fyTP--------~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~ 197 (541)
T 2ar0_A 126 RDDFGDMYEGLLQKNANETKSGAGQYFTP--------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 197 (541)
T ss_dssp ------------------------CCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT
T ss_pred hhHHHHHHHHHHHHHHHhccccCCeeeCC--------HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcc
Confidence 45566677776653211 012222222 2234556777777889999999999999999888651
Q ss_pred -------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEEEccccCCc--cCCCccEEEEcchhhhcCh-
Q 035870 652 -------------GCKYTGITLSEEQLKYAEMKVKEAGLQD----LIRLYLCDYRQLA--KANKYDRIISCEMIEAVGH- 711 (842)
Q Consensus 652 -------------~~~v~gid~s~~~~~~a~~~~~~~~l~~----~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~~~- 711 (842)
..+++|+|+++.+++.|+.++...|+.. ++.+.++|....+ ..++||+|+++..+.....
T Consensus 198 ~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~ 277 (541)
T 2ar0_A 198 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT 277 (541)
T ss_dssp TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSC
T ss_pred cccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccch
Confidence 2479999999999999999988877753 2789999976544 3578999999987654421
Q ss_pred -----------hhHHHHHHHHHhccccCcEEEEEee
Q 035870 712 -----------EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 712 -----------~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+....+++.+.+.|||||++.+...
T Consensus 278 ~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 278 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 1124789999999999999887543
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=108.67 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++.|++++.+ +|++|..++++ +.|++.+|+++.||.||.|+...
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~ 221 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMR 221 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCc
Confidence 578888888888889999999 89999987654 57888888889999999998765
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.72 E-value=7e-08 Score=106.86 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|..+++++ .|++.+|+++.||.||+|+..
T Consensus 193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~ 249 (415)
T 3lxd_A 193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI 249 (415)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 45778888888889999999999999999887776 788999999999999999874
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=108.53 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=42.7
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEeCCCcEEeCCEEEEccCh
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+.+.+++.|++++++++|++|..+++ .+.|++.+|+++.||.||+|+..
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~ 129 (360)
T 3ab1_A 77 VESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGL 129 (360)
T ss_dssp HHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTT
T ss_pred HHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCC
Confidence 33445555556889999999999998766 68999999988999999999875
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.3e-08 Score=109.15 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+++.||.||+|+..
T Consensus 201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 45688888889999999999999999999888888888889989999999999874
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=110.69 Aligned_cols=40 Identities=40% Similarity=0.589 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~~~~GG~~~ 40 (842)
+||+|||||++||+||..|++.|. +|+|||+++.+||...
T Consensus 7 ~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~ 48 (447)
T 2gv8_A 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN 48 (447)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred CEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence 489999999999999999999999 9999999999998543
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.2e-08 Score=109.55 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEE-eCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIV-CGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~-~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|..++++ +.|+ +.+|+ +.||.||+|++.
T Consensus 210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~ 266 (463)
T 4dna_A 210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR 266 (463)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence 4567888889999999999999999999988666 6888 88997 999999999874
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.5e-08 Score=113.74 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-------------------------------------------CCE
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT-------------------------------------------GCK 654 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-------------------------------------------~~~ 654 (842)
...++.....+++.+|||.+||+|.+++.+|... ..+
T Consensus 179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 3456777788899999999999999999988641 258
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c--CCCccEEEEcchhh-hcC-hhhHHHHHHHHHhcc---c
Q 035870 655 YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K--ANKYDRIISCEMIE-AVG-HEFMEEFFGCCESLL---A 726 (842)
Q Consensus 655 v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~--~~~fD~i~s~~~~~-~~~-~~~~~~~~~~~~~~L---k 726 (842)
|+|+|+++.+++.|++++..+|+.+.+++.++|+.++. + .++||+|++|..+. -++ .+....+++.+.+.| .
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~ 338 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQF 338 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999888999999999885 2 23899999997753 222 224555666555554 4
Q ss_pred cCcEEEEEe
Q 035870 727 EDGLLVLQF 735 (842)
Q Consensus 727 pgG~~~~~~ 735 (842)
|||.+++.+
T Consensus 339 ~g~~~~ilt 347 (703)
T 3v97_A 339 GGWNLSLFS 347 (703)
T ss_dssp TTCEEEEEE
T ss_pred CCCeEEEEe
Confidence 799988854
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.5e-09 Score=106.00 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHHHHcCCCCC--CeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------C-CCCCeEEEEccc
Q 035870 619 SLLIEKARVSKG--QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA-------G-LQDLIRLYLCDY 688 (842)
Q Consensus 619 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~-------~-l~~~v~~~~~d~ 688 (842)
+.+.+.+.++++ .+|||++||+|..++.+|+. +++|+++|+|+.+++.++++++.. + +.++++++++|.
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 456677777777 99999999999999999998 889999999999877777765432 1 324799999998
Q ss_pred cCC-c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 689 RQL-A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 689 ~~~-~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
.++ + ..++||+|++..++.+-.. ...+++..++|++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~~~~---saavkk~~~~lr~ 192 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPHKQK---SALVKKEMRVFQS 192 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCCCC--------HHHHHHHH
T ss_pred HHHHHhCcccCCEEEEcCCCCCccc---chHHHHHHHHHHH
Confidence 764 2 2347999999999876432 2334444444444
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=110.86 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|..+++++ .|++.+|+++.||.||+|+..
T Consensus 183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 45778888888999999999999999999877765 688999999999999999874
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-09 Score=116.59 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCee---------EEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVC---------SVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~---------~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...+.+.|.+.+++.|++|+++++|+ +|..++++|.|++.+| ++.||.||+|+..+.
T Consensus 171 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 171 PGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence 35788999999999999999999999 9988888888888777 899999999998763
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=102.44 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCE----EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCK----YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~----v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
..++.+++.+.+.++++|||||||+|.++..+++. +.+ |+++|+|+++++.++++. .++++++++|+.++
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 34567888889999999999999999999999988 445 999999999999999983 24899999999988
Q ss_pred ccCC-------CccEEEEcchhh
Q 035870 692 AKAN-------KYDRIISCEMIE 707 (842)
Q Consensus 692 ~~~~-------~fD~i~s~~~~~ 707 (842)
+... ..+.|++|..+.
T Consensus 103 ~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 103 DFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp CGGGGSCSSSSCCEEEEEECCHH
T ss_pred ChhHhcccccCCceEEEEccCcc
Confidence 7211 234678775543
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=108.31 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeC-CCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPA-DKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+++++|++|..+ ++++ .|.. .+|+ ++.|+.||+|+....
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 578899999998889999999999999986 5554 3332 5675 589999999997653
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-08 Score=108.80 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.+.+.+++.|++|+++++|++|..+++++.|++.+|+++.||.||+|+...
T Consensus 223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~ 278 (499)
T 1xdi_A 223 ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSV 278 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence 36778888889899999999999999998887888888899899999999998743
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.8e-08 Score=105.69 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.+.+.+++.|++++++++|++|..+++++.|.+.+| ++.||+||+|+...
T Consensus 89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~ 142 (369)
T 3d1c_A 89 TYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDY 142 (369)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence 4555556666666999999999999999888899998887 69999999999865
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=108.35 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEccccCCc---cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA--GLQDLIRLYLCDYRQLA---KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~--~l~~~v~~~~~d~~~~~---~~~~fD~i~s 702 (842)
.+|.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++++.+ |+ ++++++++|+.+.. ++++||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 46899999999999999999987 789999999999999999999988 87 58999999998853 2368999999
Q ss_pred cchh
Q 035870 703 CEMI 706 (842)
Q Consensus 703 ~~~~ 706 (842)
....
T Consensus 170 DPPr 173 (410)
T 3ll7_A 170 DPAR 173 (410)
T ss_dssp CCEE
T ss_pred CCCC
Confidence 7543
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-08 Score=108.22 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE-EEeC---CCc--EEeCCEEEEccChHH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT-IVCG---DGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~-V~~~---~G~--~~~ad~VV~A~p~~~ 271 (842)
.+.+.|.+.+++.|++|+++++|++|..+++++. |++. +|+ ++.||.||.|.....
T Consensus 101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 5666777777777999999999999999888753 4443 676 789999999987553
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.6e-08 Score=98.21 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
..++.+++.+.+.++++|||||||+|.++..+++.+..+|+++|+|+.+++.++++ . ..+++++++|+.+++ ++
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhH
Confidence 45678889999999999999999999999999988448999999999999999887 1 248999999999887 22
Q ss_pred --CCccEEEEcchh
Q 035870 695 --NKYDRIISCEMI 706 (842)
Q Consensus 695 --~~fD~i~s~~~~ 706 (842)
+.| .|+++...
T Consensus 93 ~~~~~-~vv~NlPy 105 (249)
T 3ftd_A 93 LGKEL-KVVGNLPY 105 (249)
T ss_dssp SCSSE-EEEEECCT
T ss_pred ccCCc-EEEEECch
Confidence 233 67776554
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-08 Score=103.86 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=40.9
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEe---CCCcEEeCCEEEEccCh
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVC---GDGSREFYNSCVMALHA 269 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~A~p~ 269 (842)
.+.+.+.+++.|+++++++ |++|..+++.+.+.+ .++.++.+|.||+|+..
T Consensus 87 ~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~ 140 (338)
T 3itj_A 87 MDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA 140 (338)
T ss_dssp HHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE
T ss_pred HHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC
Confidence 3344455555699999998 999999998999888 46778999999999765
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=107.18 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc----EEEEeCCCc-EEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG----CTIVCGDGS-REFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~----v~V~~~~G~-~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|++|..++++ +.|++.+|+ ++.||.||+|+..
T Consensus 255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE 314 (523)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence 467888889999999999999999999987665 788888887 8999999999864
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=107.14 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+.+.|++|+.+++|++|..+++++ .|.. .+|+ ++.|+.||+|+....
T Consensus 155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4788999999988999999999999999876654 3333 4675 689999999997654
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=110.23 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe---CCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC---GDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+.+.|++|+.+++|++|..+++++ .|.. .+|+ .+.|+.||+|+..+.
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 4788999999988899999999999998876653 2322 5675 489999999997653
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=108.91 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=47.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
||+|||||++||++|+.|++.|++|+|+|+.+.++...+. .. ..++..++++++|+....
T Consensus 28 dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~------------~~----l~~~~~~~l~~lGl~~~~ 87 (549)
T 2r0c_A 28 DVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRV------------GT----IGPRSMELFRRWGVAKQI 87 (549)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCC------------CE----ECHHHHHHHHHTTCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCce------------ee----eCHHHHHHHHHcCChHHH
Confidence 7999999999999999999999999999998876542211 11 235677888998876543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-08 Score=111.33 Aligned_cols=119 Identities=17% Similarity=0.071 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc----------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT----------------GCKYTGITLSEEQLKYAEMKVKEAGLQD 679 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gid~s~~~~~~a~~~~~~~~l~~ 679 (842)
..++.|++.+...++ +|||.+||+|++...+++.. ..+++|+|+++.+++.|+.++...|+..
T Consensus 232 ~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 232 SIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 445677777777666 99999999999998876531 4689999999999999999999888876
Q ss_pred CeEEEEccccCCc--cCCCccEEEEcchhhh-------------------------cChh--hHHHHHHHHHhccccCcE
Q 035870 680 LIRLYLCDYRQLA--KANKYDRIISCEMIEA-------------------------VGHE--FMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 680 ~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~-------------------------~~~~--~~~~~~~~~~~~LkpgG~ 730 (842)
++.+.++|....+ ...+||+|++|..+.. ++.. .--.+++.+.+.|||||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 6666888865544 4578999999977653 1110 012589999999999999
Q ss_pred EEEEe
Q 035870 731 LVLQF 735 (842)
Q Consensus 731 ~~~~~ 735 (842)
+.+..
T Consensus 391 ~aiVl 395 (544)
T 3khk_A 391 MALLL 395 (544)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88754
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=105.65 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++++++++|++|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~ 263 (450)
T 1ges_A 208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR 263 (450)
T ss_dssp HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence 357778888888889999999999999987655 7888999988999999999864
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=105.45 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESW-GCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++. |++|+++ +|++|..++++ +.|++.+|+++.||.||.|+...
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~ 251 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFR 251 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCc
Confidence 36888888888888 9999999 99999987655 67888899889999999998765
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-07 Score=102.84 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++.|++++.+ +|++|..++++ +.|++.+|+++.||.||.|....
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~ 229 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFR 229 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcc
Confidence 468888888888889999999 99999986655 67888899889999999998765
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=104.99 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
...+.+.+.+.+++.|++|+++++|++|+.+++++.|++.+|+++.+|.||+|+...
T Consensus 207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRR 263 (455)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence 456788888888888999999999999998888888888888899999999998743
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-07 Score=103.56 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCc--EEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKG--CTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++ .|++++.+ +|++|..++++ +.|++.+|+++.||.||.|....
T Consensus 175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~ 232 (526)
T 2pyx_A 175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAK 232 (526)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcc
Confidence 3677888888887 79999999 69999987655 47888887789999999998765
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=99.30 Aligned_cols=39 Identities=33% Similarity=0.581 Sum_probs=35.7
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++||+||++|+++ |++|+|+|+...+||.+
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~ 120 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence 3899999999999999999997 99999999998888744
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=106.35 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cE-EEEeC------CC---------cEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GC-TIVCG------DG---------SREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v-~V~~~------~G---------~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++.|++|+++++|++|..+++ .+ .|++. +| .++.||.||.|....
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~ 216 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH 216 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCC
Confidence 6777788888888999999999999998875 45 47775 33 579999999998754
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=99.73 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+.+++.|++++. ++|++|..+++++.|++.+|+++.+|.||+|+..
T Consensus 65 l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~ 112 (311)
T 2q0l_A 65 WQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG 112 (311)
T ss_dssp HHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE
T ss_pred HHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC
Confidence 34444555889988 7999999988888898888889999999999874
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=105.99 Aligned_cols=40 Identities=35% Similarity=0.614 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHh---CCCe---EEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAK---AGVE---VVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~---~G~~---V~VlEa~~~~GG~~~ 40 (842)
|||+|||||++||+||..|++ .|++ |+|+|+++.+||.+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~ 48 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN 48 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGS
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEee
Confidence 589999999999999999999 9999 999999999998654
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=87.96 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 217 YVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 217 l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+.+.+++.|++++++ +|++|+.+++++.|++.+| ++.||.||+|+...
T Consensus 58 ~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 58 LLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence 4445566667779999999 9999999888899999888 89999999998754
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=105.46 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=45.1
Q ss_pred hHHHHHHHHHh-hhcCceEEeCCCeeEEEeCCCcEEEEeC--CC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQL-ESWGCQIRTSSEVCSVLPADKGCTIVCG--DG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l-~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+ +++|++|+++++|++|+.+++++.|++. +| +++.||.||+|++.
T Consensus 215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~ 274 (468)
T 2qae_A 215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR 274 (468)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence 45777888888 8889999999999999988777777765 66 57999999999864
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.6e-08 Score=111.26 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|..+++ .|++.+|+++.||.||+|++.
T Consensus 227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~~D~Vi~a~G~ 280 (588)
T 3ics_A 227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSVIQTDMLILAIGV 280 (588)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCEEECSEEEECSCE
T ss_pred CHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCEEEcCEEEEccCC
Confidence 356788888899999999999999999987655 466788889999999999874
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=96.60 Aligned_cols=38 Identities=42% Similarity=0.660 Sum_probs=35.6
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++. |++|+|+|+++.+||.+
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~ 106 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS 106 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence 899999999999999999998 99999999999998743
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-08 Score=100.39 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCE--EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCK--YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~--v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..++.+++.+.+.++++|||||||+|.++. ++ + +.+ |+++|+|+++++.+++++... ++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCH
Confidence 455788888889999999999999999999 65 4 467 999999999999999887542 37999999999876
Q ss_pred cC-----CCccEEEEcchh
Q 035870 693 KA-----NKYDRIISCEMI 706 (842)
Q Consensus 693 ~~-----~~fD~i~s~~~~ 706 (842)
++ +..|.|+++...
T Consensus 82 ~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHTSCEEEEEECCT
T ss_pred HHhhcccCCceEEEECCCC
Confidence 21 245788888653
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-07 Score=99.03 Aligned_cols=35 Identities=34% Similarity=0.560 Sum_probs=32.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||+|||||+|||+||++|++.|++|+|+|+. ..||
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg 42 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRN 42 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCC
Confidence 8999999999999999999999999999985 4555
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=92.17 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.|.+.+++. |++++ +++|++|..+++++ .|.+.+|+++.||.||+|+...
T Consensus 69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 69 AFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 4555677777776 88998 67999999887775 6888889889999999998764
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=100.68 Aligned_cols=51 Identities=27% Similarity=0.334 Sum_probs=40.8
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.+.+++.|++++.++ |+.|+.+++++.|++ +|+++.+|.||+|+...
T Consensus 73 ~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~ 123 (333)
T 1vdc_A 73 TDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV 123 (333)
T ss_dssp HHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence 3344455555689999987 999999888888888 77789999999998754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=98.19 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHHhhhc-CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 220 KVRKQLESW-GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 220 ~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.+.+.+++. ++++. +++|+.|..+++++.|++.+|+++.+|.||+|+..
T Consensus 61 ~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~ 110 (297)
T 3fbs_A 61 EARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGV 110 (297)
T ss_dssp HHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCC
T ss_pred HHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCC
Confidence 344444444 45554 56999999998889999999988999999999875
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-07 Score=98.96 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=34.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++.|++|+|+|++ .+||.+
T Consensus 10 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~ 46 (325)
T 2q7v_A 10 DVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQI 46 (325)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGG
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccc
Confidence 7999999999999999999999999999997 678744
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=102.01 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.+.+.+++.|++|+++++|++|..+++++.|++.+|+++.||.||+|++..
T Consensus 187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~ 242 (384)
T 2v3a_A 187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLR 242 (384)
T ss_dssp HHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCC
Confidence 46778888899889999999999999998888888999999899999999998643
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-07 Score=103.81 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|+++++|++|+.++++ +.|++.+|+++.||.||+|+..
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 467788888899999999999999999987654 7888999988999999999864
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=104.57 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc-EEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGS-REFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++++++++|++|+.+++++.|++.+|+ ++.+|.||+|+..
T Consensus 207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 262 (463)
T 2r9z_A 207 PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR 262 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC
Confidence 356777888888899999999999999987777889999998 8999999999864
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-07 Score=100.91 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++++++++|++|+.+ + |++++|+++.||.||++++.
T Consensus 218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G~ 268 (409)
T 3h8l_A 218 PNSRKAVASIYNQLGIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPPY 268 (409)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECCE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCCC
Confidence 567888888898999999999999999643 2 77789999999999999864
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=92.72 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=102.5
Q ss_pred CCeEEEeccCchHHHHHHHHh------------------cCCEEEEEcCC-----------HHHHHHHHHHHHHcCCCCC
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR------------------TGCKYTGITLS-----------EEQLKYAEMKVKEAGLQDL 680 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~------------------~~~~v~gid~s-----------~~~~~~a~~~~~~~~l~~~ 680 (842)
..+|+|+||++|..+..+... +..+|...|+. +.+.+.+++ ..|-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 578999999999999887755 33578889987 544444322 2232113
Q ss_pred eEEEEccccC----CccCCCccEEEEcchhhhcChh-------------------------------------hHHHHHH
Q 035870 681 IRLYLCDYRQ----LAKANKYDRIISCEMIEAVGHE-------------------------------------FMEEFFG 719 (842)
Q Consensus 681 v~~~~~d~~~----~~~~~~fD~i~s~~~~~~~~~~-------------------------------------~~~~~~~ 719 (842)
..|+.+.-.. +-+++++|+|+|+.++|++.+. ++..+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566665332 2378999999999999997531 1223477
Q ss_pred HHHhccccCcEEEEEeecCCCc--ccc---cccC-----------ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 720 CCESLLAEDGLLVLQFISIPDE--RYN---EYRL-----------SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 720 ~~~~~LkpgG~~~~~~~~~~~~--~~~---~~~~-----------~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
..++.|+|||++++.....++. ... .... ..+-+..+-.| -+.|+.+|+...+++..+|++..
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P-~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVP-IYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCS-BCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCc-ccCCCHHHHHHHHHHcCCceEEE
Confidence 7799999999999998887664 100 0000 00112223334 36789999999998855799988
Q ss_pred EEecC
Q 035870 784 VENIG 788 (842)
Q Consensus 784 ~~~~~ 788 (842)
++.+.
T Consensus 289 le~~~ 293 (384)
T 2efj_A 289 LETFN 293 (384)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-07 Score=103.21 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=92.1
Q ss_pred HHHHHHHHcC----CCCCCeEEEeccCchHHHHHHHHhc----CCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcc
Q 035870 617 KVSLLIEKAR----VSKGQEVLEIGCGWGTLAIEIVKRT----GCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCD 687 (842)
Q Consensus 617 ~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~la~~~----~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d 687 (842)
..+.|++.+. ..++.+|||.+||+|++...+++.. ..+++|+|+++.+++.|+.++...|+. +++.+.++|
T Consensus 205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gD 284 (542)
T 3lkd_A 205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNAD 284 (542)
T ss_dssp HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecc
Confidence 3445555554 4578899999999999999888762 578999999999999999999888875 468999999
Q ss_pred ccCC--c--cCCCccEEEEcchhhhcC-------------------h-h-hHHHHHHHHHhccc-cCcEEEEEee
Q 035870 688 YRQL--A--KANKYDRIISCEMIEAVG-------------------H-E-FMEEFFGCCESLLA-EDGLLVLQFI 736 (842)
Q Consensus 688 ~~~~--~--~~~~fD~i~s~~~~~~~~-------------------~-~-~~~~~~~~~~~~Lk-pgG~~~~~~~ 736 (842)
.... + ...+||+|++|..+..-. . . .--.+++.+.+.|| |||++.+...
T Consensus 285 tL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 285 TLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp TTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred eecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 7655 3 457899999997653110 0 0 01248999999999 9999877543
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=105.36 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|+.+++++.|++.++ +++.+|.||+|++.
T Consensus 220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 356788888889999999999999999999888887777654 57899999999873
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.6e-07 Score=100.89 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCCC-cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGDG-SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G-~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|++|+.++++ +.|++.+| +++.+|.||+|+..
T Consensus 226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~ 283 (479)
T 2hqm_A 226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR 283 (479)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence 467778888888889999999999999987655 78888899 78999999999863
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=104.99 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|+++++|++|..++++ +.|++.+|+++.||.||+|+..
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 467788888899999999999999999987654 7888999989999999999864
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-07 Score=101.72 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.+.+.++++|++|+++++|++|..++....|++.+|+++.||.||+|++..
T Consensus 185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~ 240 (410)
T 3ef6_A 185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE 240 (410)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence 45677788888889999999999999988765558999999999999999998743
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.1e-07 Score=96.79 Aligned_cols=37 Identities=32% Similarity=0.610 Sum_probs=33.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++.|++|+|+|+ ..+||.+
T Consensus 18 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~ 54 (319)
T 3cty_A 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLT 54 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGG
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccc
Confidence 799999999999999999999999999999 5677743
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=107.28 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=46.7
Q ss_pred cEEEECCChHHHHHHHHHHh-CCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 2 RVAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~-~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
||+|||||++||++|+.|++ .|++|+|+|+.+.++...+ +.. ..++..++++++|+....
T Consensus 34 dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~------------a~~----l~~~t~e~l~~lGl~~~~ 94 (639)
T 2dkh_A 34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQ------------ADG----IACRTMEMFEAFEFADSI 94 (639)
T ss_dssp EEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCS------------CCE----ECHHHHHHHHHTTCHHHH
T ss_pred cEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCc------------eee----eCHHHHHHHHHcCcHHHH
Confidence 79999999999999999999 9999999999876543111 011 245677899999986554
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-07 Score=102.75 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEe-----CCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVC-----GDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~-----~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|+++++|++|..++++ +.|++ .+++++.+|.||+|+..
T Consensus 220 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~ 280 (474)
T 1zmd_A 220 MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280 (474)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence 467778888888899999999999999988776 77763 56678999999999864
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-07 Score=102.19 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.|.+.+++ .|++| ++++|+.|..+++++ .|.+.+|.++.||.||+|+...
T Consensus 123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~ 179 (637)
T 2zxi_A 123 KRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF 179 (637)
T ss_dssp HHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred HHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence 3566777777877 48999 678999999888876 6889999899999999998864
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-07 Score=102.13 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC---CC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG---DG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|++|..+++++.|++. +| +++.+|.||+|+..
T Consensus 218 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 277 (470)
T 1dxl_A 218 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR 277 (470)
T ss_dssp HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence 467788888898899999999999999987777776654 44 67999999999864
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.9e-07 Score=100.83 Aligned_cols=55 Identities=18% Similarity=0.028 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEe--CCCcEEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVC--GDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G~~~~ad~VV~A~p~~~ 271 (842)
..+.+.|.+.+++.|++|+.+++| +|..+++++ .|.. .+| ++.||.||+|+....
T Consensus 119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~~ 176 (472)
T 2e5v_A 119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGYS 176 (472)
T ss_dssp HHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCCc
Confidence 467888888887789999999999 998877765 3333 344 578999999987543
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=105.13 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC---C--cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD---G--SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G--~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|..+++++.|++.+ | +++.+|.||+|+..
T Consensus 238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 34677888888888999999999999999988887776652 5 57999999999863
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.6e-07 Score=92.70 Aligned_cols=110 Identities=21% Similarity=0.282 Sum_probs=85.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHc--C-C-CCCeEEEEccccCCc--cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEA--G-L-QDLIRLYLCDYRQLA--KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~--~-l-~~~v~~~~~d~~~~~--~~~~fD~i 700 (842)
+...+||-||.|.|+.+..+++.+ ..+|+.+||+++.++.+++.+... + + .++++++.+|....- ..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 456799999999999999999884 469999999999999999986531 2 1 358999999988765 55799999
Q ss_pred EEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+.-..=..-+.+ .-.++++.+++.|+|||.++.+.-+
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 975321100001 2368999999999999999998654
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=106.48 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEe-------------------CCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLP-------------------ADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~-------------------~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|+++++++.|++|.. .++++.+++.+|+++.||.||+|++.
T Consensus 192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV 265 (565)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence 46777888888889999999999999987 46678888889989999999999874
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=99.84 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcE-EeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSR-EFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|+++++|++|+.++++ +.|++.+|++ +.+|.||+|++.
T Consensus 217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~ 273 (500)
T 1onf_A 217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR 273 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence 467788888999999999999999999987544 7888889987 999999999864
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=101.06 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhhhcC-ceEEeCCCeeEEEeCCCcE---EEE-eCCCc--EEeCCEEEEccChHH
Q 035870 215 HSYVNKVRKQLESWG-CQIRTSSEVCSVLPADKGC---TIV-CGDGS--REFYNSCVMALHAPD 271 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G-~~i~~~~~V~~I~~~~~~v---~V~-~~~G~--~~~ad~VV~A~p~~~ 271 (842)
..+...|.+.+.+.| ++|+++++|++|..+++++ .+. +.+|+ ++.|+.||+|+....
T Consensus 134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 478889999998888 9999999999999887753 233 25776 689999999987653
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-07 Score=102.15 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=32.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||++||+||+.|++ |.+|+|||+....||.
T Consensus 10 DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~ 45 (540)
T 1chu_A 10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS 45 (540)
T ss_dssp SEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred CEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence 89999999999999999999 9999999998877763
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-07 Score=100.05 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+.+.+.++++|++|+++++|++|..+++.+.|++. ++++.||.||+|+...
T Consensus 216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRT 270 (467)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCC
Confidence 467888889999999999999999999987777778776 4589999999998753
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.46 E-value=5.3e-07 Score=95.42 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCC---CcEEEEeCCCcEEeCCEEEEccChH
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPAD---KGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~---~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.+.+++.|++++.+++|+.|..+. +.+.|++.+|+++.+|+||+|+...
T Consensus 62 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~ 114 (310)
T 1fl2_A 62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (310)
T ss_dssp HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence 3344455589999999999998753 3688999999889999999998753
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.5e-07 Score=102.09 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhh-cCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLES-WGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+...|.+.+++ .|++| ++++|+.|..+++++ .|.+.+|.++.||.||+|+...
T Consensus 125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~ 180 (651)
T 3ces_A 125 LYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTF 180 (651)
T ss_dssp HHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred HHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence 566777777777 58999 678999999888776 7888889889999999998765
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-07 Score=91.64 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-c
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-K 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 693 (842)
.|+..+.++..++++.+|||+|||+|+++..++++.+ ..|+|+|++.++....... ...+. ++.....++.... +
T Consensus 61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv~~l~ 137 (277)
T 3evf_A 61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDIHRLE 137 (277)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCTTTSC
T ss_pred HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC--CeEEEeccceehhcC
Confidence 4666777776678999999999999999999987733 4788999885431111000 00011 3444555543333 4
Q ss_pred CCCccEEEEcchhhhcChhhH-----HHHHHHHHhccccC-cEEEEEeec
Q 035870 694 ANKYDRIISCEMIEAVGHEFM-----EEFFGCCESLLAED-GLLVLQFIS 737 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~-----~~~~~~~~~~Lkpg-G~~~~~~~~ 737 (842)
.++||+|+|..+.. .+.... ..+++.+.++|||| |.|++-.+.
T Consensus 138 ~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 138 PVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 57899999976554 333222 23468889999999 999996554
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.6e-07 Score=99.21 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC-CC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG-DG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|++|+++++|++|..+++++.|++. +| +++.+|.||+|+..
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 269 (464)
T 2a8x_A 212 ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF 269 (464)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence 467777888888889999999999999988777777764 56 57999999999864
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-07 Score=102.03 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChH
Q 035870 223 KQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
+.++++|++|++++.|++|..+++...|++.+|+++.||.||+++...
T Consensus 265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~ 312 (493)
T 1y56_A 265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRR 312 (493)
T ss_dssp HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEE
T ss_pred HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcC
Confidence 556677999999999999987654456778889899999999998743
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.6e-07 Score=102.31 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|..+++++...+.+|+++.||.||+|++.
T Consensus 190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~ 245 (452)
T 2cdu_A 190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF 245 (452)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence 34678888889999999999999999999766666533347888999999999864
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.8e-07 Score=101.08 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-----CeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAG-----VEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G-----~~V~VlEa~~~~GG 37 (842)
||+|||||++||+||..|++.| .+|+|||+++.+|.
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~ 72 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW 72 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence 7999999999999999999999 99999999998774
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.6e-07 Score=96.35 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 223 KQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+++.|++++.++ |+.|+.+++.+.| +.+|+++.+|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~ 114 (320)
T 1trb_A 70 EHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGA 114 (320)
T ss_dssp HHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCE
T ss_pred HHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCC
Confidence 33444588999986 9999988888888 667778999999999764
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.7e-07 Score=98.38 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEe--CCCcE-EEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLP--ADKGC-TIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~--~~~~v-~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++|+++++|++|.. +++++ .|++.+|+++.||.||+|++.
T Consensus 191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 46777888888888999999999999997 55565 788889989999999999874
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=99.20 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhc-CceEEeCCCeeEEEeCCCcEE-EEeCCCcEEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GCQIRTSSEVCSVLPADKGCT-IVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+...|.+.+++. |++|+ +..|+.|..++++|. |.+.+|+++.||.||+|+..+
T Consensus 118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~ 173 (641)
T 3cp8_A 118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF 173 (641)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC
Confidence 5666777777764 88984 569999998888875 889999899999999998765
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-07 Score=90.03 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh--------cC-----CEEEEEcCCH---HHHH-----------HHHHHHHHc----
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR--------TG-----CKYTGITLSE---EQLK-----------YAEMKVKEA---- 675 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~--------~~-----~~v~gid~s~---~~~~-----------~a~~~~~~~---- 675 (842)
.+++.+|||||||+|..+..+++. +. .+++++|..+ +.+. .|++.++..
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 345679999999999988876553 22 4899999765 4444 566666541
Q ss_pred ------CCC---CCeEEEEccccCC-c-c-C---CCccEEEEcch-hhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 676 ------GLQ---DLIRLYLCDYRQL-A-K-A---NKYDRIISCEM-IEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 676 ------~l~---~~v~~~~~d~~~~-~-~-~---~~fD~i~s~~~-~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
.+. .+++++.+|+.+. + . + ..||+|+.-.. -...++-..+++|+.+.++|||||+++.
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 121 2678999998773 3 1 1 27999998542 1112211247899999999999999885
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=92.46 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=95.3
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CCeEEEEccccCCc--
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ-----DLIRLYLCDYRQLA-- 692 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~-----~~v~~~~~d~~~~~-- 692 (842)
....|+++||++|||+++|.|+-+.++++. .+..|+++|+|+.-++..++++++.+.. .++.+...|.+.++
T Consensus 140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~ 219 (359)
T 4fzv_A 140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL 219 (359)
T ss_dssp HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence 345678899999999999999999999987 3347999999999999999999887653 47899999988876
Q ss_pred cCCCccEEEEcch--------hhhc-------Ch-------hhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 693 KANKYDRIISCEM--------IEAV-------GH-------EFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 693 ~~~~fD~i~s~~~--------~~~~-------~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
..+.||.|+.-.. +..- .. ....+++....++|||||+++..+++....
T Consensus 220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL 290 (359)
T ss_dssp STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence 4578999997321 1100 00 123577889999999999999998886554
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-07 Score=101.41 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHhhhcCceEEeCCCeeEEEeCC---CcEEEEeCCCcEEeCCEEEEccChH
Q 035870 220 KVRKQLESWGCQIRTSSEVCSVLPAD---KGCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 220 ~L~~~l~~~G~~i~~~~~V~~I~~~~---~~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.+.+.+++.|++++.+++|++|..+. +.+.|++.+|+++.||+||+|+...
T Consensus 272 ~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~ 325 (521)
T 1hyu_A 272 ALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK 325 (521)
T ss_dssp HHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence 34445556689999999999998652 3688999999899999999998753
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-07 Score=96.49 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
+||+|||||++||+||+.|++.|++|+|+|+. .+||.
T Consensus 15 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~ 51 (335)
T 2a87_A 15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGA 51 (335)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCG
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCc
Confidence 37999999999999999999999999999974 66763
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.9e-06 Score=96.30 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhc-Cc-eEEeCCCeeEEEeCCC---cE-EEE---eCCCc--EEeCCEEEEccChH
Q 035870 216 SYVNKVRKQLESW-GC-QIRTSSEVCSVLPADK---GC-TIV---CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 216 ~l~~~L~~~l~~~-G~-~i~~~~~V~~I~~~~~---~v-~V~---~~~G~--~~~ad~VV~A~p~~ 270 (842)
.+...|.+.+++. |+ +|+.+++|++|..+++ +| .|. ..+|+ ++.|+.||+|+...
T Consensus 152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~ 217 (643)
T 1jnr_A 152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA 217 (643)
T ss_dssp THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence 5667777777777 99 9999999999998776 64 333 25665 58999999998765
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-06 Score=95.63 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--EEEEeCC---C----cEEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--CTIVCGD---G----SREFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~---G----~~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.+++.|++|+++++|++|+.++++ +.|++.+ | +++.+|.||+|++.
T Consensus 227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 3467788888888899999999999999987666 6777765 2 57899999999864
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-07 Score=99.40 Aligned_cols=40 Identities=40% Similarity=0.591 Sum_probs=36.7
Q ss_pred CcEEEECCChHHHHHHHHHHh--CCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~--~G~~V~VlEa~~~~GG~~~ 40 (842)
.||+|||||+|||+||++|++ .|++|+|+|+++.+||.+.
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~ 107 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence 389999999999999999975 5999999999999999775
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.9e-07 Score=96.54 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.5
Q ss_pred hcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 227 SWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 227 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.|++++++++|++|+.++. .|++++|+++.+|+||+|+..
T Consensus 74 ~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~ 114 (385)
T 3klj_A 74 KNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS 114 (385)
T ss_dssp HTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred HCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC
Confidence 34899999999999998776 567788989999999999874
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-07 Score=98.15 Aligned_cols=47 Identities=9% Similarity=-0.106 Sum_probs=41.4
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
.+.+++.|+++++++.|+.++.+++...|++.+|+++.||.||+++|
T Consensus 209 ~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g 255 (401)
T 3vrd_B 209 GFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPP 255 (401)
T ss_dssp CTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCC
T ss_pred HHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecC
Confidence 33456789999999999999998888889999999999999999876
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=92.76 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=105.4
Q ss_pred CCCeEEEeccCchHHHHHHHHh-----------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc--
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-----------------TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR-- 689 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-----------------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-- 689 (842)
...+|+|+||++|..++.+... +..+|+..|+.......+-+.+....-..+..|..+.-.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999777654433 236899999998888887766543110012345554422
Q ss_pred --CCccCCCccEEEEcchhhhcCh-------------------------------hhHHHHHHHHHhccccCcEEEEEee
Q 035870 690 --QLAKANKYDRIISCEMIEAVGH-------------------------------EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 690 --~~~~~~~fD~i~s~~~~~~~~~-------------------------------~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+-+++++|.|+|+.++|++.+ +++..+|+..++.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 2337899999999999999753 1355679999999999999999988
Q ss_pred cCCCcc---------cccccC-----------ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 737 SIPDER---------YNEYRL-----------SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 737 ~~~~~~---------~~~~~~-----------~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
..++.. ++.... ..+-+..+-.| -+.|+.+|+...+++..+|++..++.+
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P-~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCC-ccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 776542 100000 00011123334 367899999999988446788887654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=96.25 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC--CC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG--DG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++. ++|+++++|++|+.+++++.|++. +| +++.+|.||+|++.
T Consensus 215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~ 272 (492)
T 3ic9_A 215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR 272 (492)
T ss_dssp HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC
T ss_pred HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC
Confidence 46778888888877 999999999999998888888774 67 67999999999864
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-07 Score=99.84 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEeCCCc-----EEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVCGDGS-----REFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~-----~~~ad~VV~A~p~ 269 (842)
...+.+.+.+.++++|++|+++++|++|+.+++ .+.|++.+++ ++.+|.||+|++.
T Consensus 226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~ 287 (483)
T 3dgh_A 226 DQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR 287 (483)
T ss_dssp CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence 346778888889999999999999999998655 4677766553 7899999999864
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=87.20 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=70.9
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
++.+++.+.++++..+||.+||.|+.+..++++ +++|+|+|.++++++.|++ ++. ++++++++|+.++.
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHH
Confidence 357788889999999999999999999999998 8899999999999999998 643 48999999999885
Q ss_pred -cCCCccEEEEcch
Q 035870 693 -KANKYDRIISCEM 705 (842)
Q Consensus 693 -~~~~fD~i~s~~~ 705 (842)
..+++|.|+....
T Consensus 85 ~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 85 LGVERVDGILADLG 98 (285)
T ss_dssp TTCSCEEEEEEECS
T ss_pred cCCCCcCEEEeCCc
Confidence 1257999998543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-06 Score=96.69 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=78.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcC----CEEEEEcCCHHHHHHH--HHHHHHcCCCC---CeEEEEccccCCc--cCCC
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTG----CKYTGITLSEEQLKYA--EMKVKEAGLQD---LIRLYLCDYRQLA--KANK 696 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~----~~v~gid~s~~~~~~a--~~~~~~~~l~~---~v~~~~~d~~~~~--~~~~ 696 (842)
+++.+|||.|||+|.++..+++..+ .+++|+|+++.+++.| +.++..+++.. ...+...|+.+.. ..++
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4688999999999999999998742 5799999999999999 44433322211 2356667776643 4578
Q ss_pred ccEEEEcchhhh-cC-h-------------------------hhHHHHHHHHHhccccCcEEEEEee
Q 035870 697 YDRIISCEMIEA-VG-H-------------------------EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 697 fD~i~s~~~~~~-~~-~-------------------------~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
||+|++|..+-. .. + +-...+++.+.++|||||++.+...
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999999987621 10 0 0134578889999999999988543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-07 Score=91.25 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc--cccCCc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC--DYRQLA 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~--d~~~~~ 692 (842)
.|+..+.++..++++.+|||+|||.|+++.+++++ ....|+|+|++..+...+... ...+ .++..... |+..++
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNME 153 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcC
Confidence 46667777777889999999999999999999876 334799999987643222110 0011 12333332 444443
Q ss_pred cCCCccEEEEcchhhhcChhh-----HHHHHHHHHhccccC--cEEEEEeec
Q 035870 693 KANKYDRIISCEMIEAVGHEF-----MEEFFGCCESLLAED--GLLVLQFIS 737 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~-----~~~~~~~~~~~Lkpg--G~~~~~~~~ 737 (842)
.+++|+|+|..+.. .+... ...+++-+.++|||| |.|++-.+.
T Consensus 154 -~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 -VIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -CCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 47899999976544 33321 123477778999999 999997655
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=101.50 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=46.0
Q ss_pred cEEEECCChHHHHHHHHHHh-----CCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 2 RVAVIGAGISGLVSAYVLAK-----AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~-----~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
||+|||||++||++|..|++ .|++|+|+|+.+...-. | .+.. ..++..++++++|+...
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~-------g-----ra~~----l~~~tle~l~~lGl~~~ 73 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYN-------G-----QADG----LQCRTLESLKNLGLADK 73 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCS-------C-----SCCE----ECHHHHHHHHTTTCHHH
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCC-------C-----ceeE----EChHHHHHHHHCCCHHH
Confidence 79999999999999999999 99999999997643210 0 0111 24577899999998655
Q ss_pred c
Q 035870 77 M 77 (842)
Q Consensus 77 ~ 77 (842)
.
T Consensus 74 l 74 (665)
T 1pn0_A 74 I 74 (665)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.4e-06 Score=93.33 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++. +++++++.|++|..++ ++.+...+|+++.||.||+|+..
T Consensus 190 ~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~ 242 (449)
T 3kd9_A 190 KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGI 242 (449)
T ss_dssp HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCE
T ss_pred HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCC
Confidence 46778888888888 9999999999998765 55333456778999999999864
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=85.25 Aligned_cols=120 Identities=8% Similarity=0.007 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh------cCCEEEEEcCCHH----------------------
Q 035870 613 AQMRKVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR------TGCKYTGITLSEE---------------------- 663 (842)
Q Consensus 613 aq~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~------~~~~v~gid~s~~---------------------- 663 (842)
.+...+..+++.+. .....+|||+||..|..++.+++. ++.+|+++|..+.
T Consensus 89 ~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 89 KRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 33445555555543 233459999999999999988765 2678999996421
Q ss_pred ----HHHHHHHHHHHcCCC-CCeEEEEccccCC-c--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 664 ----QLKYAEMKVKEAGLQ-DLIRLYLCDYRQL-A--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 664 ----~~~~a~~~~~~~~l~-~~v~~~~~d~~~~-~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++.+++++++.|+. ++|+++.+|+.+. + +.++||+|..-.-.. +....+|+.+...|+|||.+++.+
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 467799999999994 7999999998653 3 346899999865321 225688999999999999999966
Q ss_pred e
Q 035870 736 I 736 (842)
Q Consensus 736 ~ 736 (842)
+
T Consensus 245 ~ 245 (282)
T 2wk1_A 245 Y 245 (282)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.3e-06 Score=94.30 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~G 36 (842)
|||+|||||++||+||..|++. |.+|+|+|+++.+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence 7999999999999999999997 99999999977643
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-06 Score=97.33 Aligned_cols=56 Identities=16% Similarity=0.004 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhhc--CceEEeCCCeeEEEeCCC---cE-EEEe---CCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESW--GCQIRTSSEVCSVLPADK---GC-TIVC---GDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~--G~~i~~~~~V~~I~~~~~---~v-~V~~---~~G~--~~~ad~VV~A~p~~ 270 (842)
..+...|.+.+++. |++|+.++.|++|..+++ ++ .|.. .+|+ ++.|+.||+|+...
T Consensus 166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~ 232 (662)
T 3gyx_A 166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGA 232 (662)
T ss_dssp TSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcc
Confidence 35777888888877 999999999999988776 54 3322 4554 58999999998754
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.2e-06 Score=89.13 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc---CC----CCCeEEEEccccCCc-----cCC
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA---GL----QDLIRLYLCDYRQLA-----KAN 695 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~---~l----~~~v~~~~~d~~~~~-----~~~ 695 (842)
.+..+||-||.|.|+.+..+.+.+..+|+.+||+++.++.+++.+... .+ .++++++.+|..+.- ..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 456899999999999999999886679999999999999999875321 11 136899999976543 346
Q ss_pred CccEEEEcchh-------hhcC-hhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMI-------EAVG-HEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~-------~~~~-~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|+.-..- .... .....++++.+++.|+|||.++.+.-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 89999985211 1111 12347889999999999999998753
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.9e-06 Score=94.52 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=35.1
Q ss_pred CceEEeCCCeeEEEeCCCcEEEEe-CCCc--EEeCCEEEEccCh
Q 035870 229 GCQIRTSSEVCSVLPADKGCTIVC-GDGS--REFYNSCVMALHA 269 (842)
Q Consensus 229 G~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VV~A~p~ 269 (842)
|++++++++|+.|+.+++.+.+.. .+|+ ++.+|+||+|+..
T Consensus 107 gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~ 150 (480)
T 3cgb_A 107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV 150 (480)
T ss_dssp CCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred CCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC
Confidence 889999999999998888888876 5576 7999999999864
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-05 Score=89.77 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
-..+.+.+.+.++++|+++++++.|+++...++++.|.+.+++++.+|.|++|+.
T Consensus 262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG 316 (542)
T 4b1b_A 262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG 316 (542)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred chhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc
Confidence 4578889999999999999999999999999999999999998999999999985
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-06 Score=94.92 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHhhcCCCChHHHHhccccce
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQY 293 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l~~~~~ 293 (842)
...++..|.+.++++|++|+. ++|++|+..+ .+.||.||+|+..+.. .+++. .+.
T Consensus 141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s~-~l~~~------------~~l 195 (351)
T 3g3e_A 141 GKNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWAG-ALQRD------------PLL 195 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGGG-GTSCC------------TTC
T ss_pred HHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcChH-hhcCC------------Cce
Confidence 458999999999999999998 9998885432 2679999999988743 33332 122
Q ss_pred eece-EEEecCCCC-----cCCCCC-CcceeeecccCCCceEEEEEc--ccccC-CCC----CCCCeEEecCCCCCCcce
Q 035870 294 VYSD-IFLHRDKRF-----MPQNPA-AWSAWNFLESFDSKVCLTYWL--NVLQN-LGE----TSLPFLVTLNPDHVPEHT 359 (842)
Q Consensus 294 ~~~~-v~l~~~~~~-----~p~~~~-~~~~~~~~~~~~~~~~v~~~~--~~l~~-l~~----~~~~~~~~l~~~~~~~~~ 359 (842)
.+.+ -++.++.+. ++.... .-....|.....+...+.... +.... ... .+.+.+..+.|......+
T Consensus 196 ~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~iGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i 275 (351)
T 3g3e_A 196 QPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARI 275 (351)
T ss_dssp EEEEEEEEEEECTTCCSEEEECCTTTCTTCSCEEEECSSCEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGCEE
T ss_pred eecCCcEEEEeCCCcceEEEeccccCCCCceeEEEeCCCcEEEeeeeecCCCCCCCCHHHHHHHHHHHHHhCCCccCCcE
Confidence 2211 111122111 100000 000011221112233332111 00000 000 001111223333233346
Q ss_pred eEEEEcCCCCCCHHHHHHHHhhhhhcCCCCeEEeccccCCCCCchhHhHHHHHHHHhcCC
Q 035870 360 LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMTAAHGVLGK 419 (842)
Q Consensus 360 ~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~l~~aG~~~g~G~~e~A~~SG~~aA~~Il~~ 419 (842)
...|...+|.-. ..+-..+.+......+|+|++.+|.|.|+ ..|...|+.+|+.|.+.
T Consensus 276 ~~~w~G~r~~t~-D~p~~~~~ig~~~~~~~~~~~~G~~g~G~-~~ap~~g~~la~li~~~ 333 (351)
T 3g3e_A 276 IGERTGFRPVRP-QIRLEREQLRTGPSNTEVIHNYGHGGYGL-TIHWGCALEAAKLFGRI 333 (351)
T ss_dssp EEEEEEEEEECS-SCEEEEEEECCSSSCEEEEEEECCTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred eeeeEeeCCCCC-CccceeeeccCCCCCCeEEEEeCCCcchH-hhhHHHHHHHHHHHHHH
Confidence 667876555321 10000001122233579999999999999 89999999999999764
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-06 Score=91.01 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=34.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||||+|||+||.+|++.|++|+|+|+ +.+||.+.
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~ 45 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMA 45 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeee
Confidence 799999999999999999999999999998 56788664
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=89.49 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
..+.+.+.+.++++|++++++++|++++. + .|++++|+++.+|.||+|+.
T Consensus 188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~--~--~v~~~~g~~~~~D~vl~a~G 237 (437)
T 4eqs_A 188 ADMNQPILDELDKREIPYRLNEEINAING--N--EITFKSGKVEHYDMIIEGVG 237 (437)
T ss_dssp GGGGHHHHHHHHHTTCCEEESCCEEEEET--T--EEEETTSCEEECSEEEECCC
T ss_pred chhHHHHHHHhhccceEEEeccEEEEecC--C--eeeecCCeEEeeeeEEEEec
Confidence 45677788888889999999999999853 2 47778999999999999986
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=71.72 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC-
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWG-TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA- 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G-~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~- 694 (842)
..+.+.+.. .++.+|||||||.| ..+..|+++.+++|+++|+|+..++ +++.|+.+...+
T Consensus 25 LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~ 86 (153)
T 2k4m_A 25 LAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEI 86 (153)
T ss_dssp HHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHH
T ss_pred HHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcccc
Confidence 334444443 45679999999999 6999999855999999999997665 788888775522
Q ss_pred -CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 695 -NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 695 -~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+.||+|.++.. +.| +...+.++.+. -|.-++|...+.
T Consensus 87 Y~~~DLIYsirP----P~E-l~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 87 YRGAALIYSIRP----PAE-IHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp HTTEEEEEEESC----CTT-THHHHHHHHHH--HTCEEEEECBTT
T ss_pred cCCcCEEEEcCC----CHH-HHHHHHHHHHH--cCCCEEEEcCCC
Confidence 58999988643 222 34444444442 366788765543
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=89.46 Aligned_cols=33 Identities=36% Similarity=0.687 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHh---CCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAK---AGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~---~G~~V~VlEa~~ 33 (842)
|||+|||||++||+||+.|++ .|++|+|+|+++
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~ 40 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND 40 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence 589999999999999999999 899999999966
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.9e-06 Score=94.04 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC---CeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG---VEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G---~~V~VlEa~~~~G 36 (842)
+||+|||||++|++||..|++.| .+|+|+|+++.+|
T Consensus 36 ~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~ 74 (490)
T 2bc0_A 36 SKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS 74 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 48999999999999999999988 9999999977543
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-06 Score=90.88 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=33.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
+||+|||||++|+++|++|+++|++|+|+|+....+|
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g 43 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence 3899999999999999999999999999999775444
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-06 Score=94.30 Aligned_cols=39 Identities=44% Similarity=0.673 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
+||+|||||+|||+||+.|++.|++|+|+|+.+.+||..
T Consensus 123 ~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l 161 (456)
T 2vdc_G 123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLL 161 (456)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence 589999999999999999999999999999999999964
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.7e-05 Score=86.70 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--------------CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--------------GCKYTGITLSEEQLKYAEMKVKEAGLQDL 680 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--------------~~~v~gid~s~~~~~~a~~~~~~~~l~~~ 680 (842)
+..++.|++.+...++.+|+|-.||+|++...+.+.. ...++|+|+++.+...|+-++--.|.. .
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~ 281 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-Y 281 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-c
Confidence 4556778888888999999999999999998876531 246999999999999999988777765 4
Q ss_pred eEEEEccccCCc-----cCCCccEEEEcchhhhc-------------C-hhhHHHHHHHHHhccc-------cCcEEEEE
Q 035870 681 IRLYLCDYRQLA-----KANKYDRIISCEMIEAV-------------G-HEFMEEFFGCCESLLA-------EDGLLVLQ 734 (842)
Q Consensus 681 v~~~~~d~~~~~-----~~~~fD~i~s~~~~~~~-------------~-~~~~~~~~~~~~~~Lk-------pgG~~~~~ 734 (842)
..+..+|....+ ...+||+|++|..+.-- + .+.-..+++.+.+.|| |||++.+.
T Consensus 282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 577888865443 34589999999876321 1 0112345677777776 79998875
Q ss_pred ee
Q 035870 735 FI 736 (842)
Q Consensus 735 ~~ 736 (842)
..
T Consensus 362 lP 363 (530)
T 3ufb_A 362 VP 363 (530)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.4e-06 Score=89.23 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
||+|||||+|||+||.+|++.|++|+|+|+..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~ 37 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM 37 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 89999999999999999999999999999965
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.4e-06 Score=91.73 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||||||||++||++|..|++.|...+++|+.+..|+
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~ 76 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ 76 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence 799999999999999999999888888888777666
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.9e-05 Score=85.88 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=39.3
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC-C--Cc--EEeCCEEEEccCh
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCG-D--GS--REFYNSCVMALHA 269 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~--G~--~~~ad~VV~A~p~ 269 (842)
.+.+++.|++|+++++|++|+.+++++.|++. + |+ ++.+|.||+|+..
T Consensus 217 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~ 269 (464)
T 2eq6_A 217 RRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR 269 (464)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred HHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence 34455569999999999999988777777775 6 76 7999999999864
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-05 Score=78.13 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~~ 693 (842)
.|+..+.++..++++.+||||||++|+++.+++...++ +|.|+|+-..-.+.-+ ..++.++. .|.+..+ |++.+++
T Consensus 81 ~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~-lV~~~~~~Dv~~l~~ 158 (321)
T 3lkz_A 81 AKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN-IVTMKSGVDVFYRPS 158 (321)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG-GEEEECSCCTTSSCC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc-ceEEEeccCHhhCCC
Confidence 46677777777899999999999999999988887555 5999999865211000 00112222 4888888 9888876
Q ss_pred CCCccEEEEcchhhhcChhh-----HHHHHHHHHhccccC-cEEEEEeecC
Q 035870 694 ANKYDRIISCEMIEAVGHEF-----MEEFFGCCESLLAED-GLLVLQFISI 738 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~-----~~~~~~~~~~~Lkpg-G~~~~~~~~~ 738 (842)
.++|.|+|--. +.-+... --..|+-+.+.|++| |-+++-.+..
T Consensus 159 -~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 -ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp -CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred -CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 67999998543 4443321 122566678889999 8999855543
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.7e-06 Score=90.27 Aligned_cols=35 Identities=43% Similarity=0.500 Sum_probs=33.3
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYL 35 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~ 35 (842)
|||+|||||++||++|+.|+++ |++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 7999999999999999999999 9999999998776
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-06 Score=78.35 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~~ 693 (842)
.|+..+.++..++++++|||+||+.|+++.+++...+. +|.|+|+-..-.+.-+ ..+..|+. .|+|..+ |+..+++
T Consensus 65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn-~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN-IVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT-SEEEECSCCGGGCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC-ceEEEeccceeecCC
Confidence 46677777778899999999999999999999888554 6999999765332100 11233554 7999999 9877765
Q ss_pred CCCccEEEEcchhhhcChh-----hHHHHHHHHHhccccCcEEEEEeec
Q 035870 694 ANKYDRIISCEMIEAVGHE-----FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~-----~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.++|.|+|--. +.-+.. .--..|+-+.+.|++ |.+++-.+.
T Consensus 143 -~~~DtllcDIg-eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 143 -EKCDTLLCDIG-ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp -CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred -ccccEEEEecC-CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 67999999421 111211 112367777899999 788885543
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.8e-06 Score=88.05 Aligned_cols=40 Identities=33% Similarity=0.647 Sum_probs=36.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEE-EecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVL-YEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~V-lEa~~~~GG~~~s 41 (842)
+||+|||||++||+||+.|++.|++|+| +|+ +.+||.+..
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~ 45 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS 45 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence 4899999999999999999999999999 999 778987643
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.83 E-value=8.7e-06 Score=95.94 Aligned_cols=41 Identities=46% Similarity=0.615 Sum_probs=38.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (842)
+||+|||||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 392 ~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~ 432 (690)
T 3k30_A 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ 432 (690)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence 58999999999999999999999999999999999997653
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.9e-06 Score=91.69 Aligned_cols=39 Identities=41% Similarity=0.570 Sum_probs=36.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~ 44 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL 44 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence 799999999999999999999999999999999999654
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=94.78 Aligned_cols=41 Identities=37% Similarity=0.548 Sum_probs=38.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCcee
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s 41 (842)
|||+|||||++||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 390 ~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~ 430 (729)
T 1o94_A 390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ 430 (729)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence 58999999999999999999999999999999999997653
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=89.27 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
+||+|||||++||++|+.|+++|++|+|+|++.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 489999999999999999999999999999976
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=8.1e-05 Score=83.73 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (842)
|+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 218 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 218 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence 57999999999999999999999999999986653
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00019 Score=78.85 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+.++++|++|+++++|++|+ + + .|++.+|+++.||.||+|++.
T Consensus 193 l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~ 237 (408)
T 2gqw_A 193 VARYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGV 237 (408)
T ss_dssp HHHHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCE
T ss_pred HHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCC
Confidence 3345556699999999999998 3 3 677889989999999999864
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.8e-05 Score=79.55 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~~ 693 (842)
.|+..+.++--++++.+|||+||++|+++..++++.+ ..|+|+|++..+...... ....+. +-+.+... |+..+.
T Consensus 68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~- 144 (300)
T 3eld_A 68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP- 144 (300)
T ss_dssp HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC-
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC-
Confidence 3555666662257899999999999999999997633 479999997543111000 000010 11223222 344443
Q ss_pred CCCccEEEEcchhhhcChhhH-----HHHHHHHHhccccC-cEEEEEeec
Q 035870 694 ANKYDRIISCEMIEAVGHEFM-----EEFFGCCESLLAED-GLLVLQFIS 737 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~-----~~~~~~~~~~Lkpg-G~~~~~~~~ 737 (842)
.+.+|+|+|..+-. .+.... ..+++-+.++|+|| |.|++-.+.
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 46899999965544 333211 23477778999999 999997665
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=81.81 Aligned_cols=35 Identities=37% Similarity=0.449 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (842)
++|+|||||++|+.+|..|++.|.+|+|+|+.+++
T Consensus 150 ~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 58999999999999999999999999999986653
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.2e-05 Score=82.99 Aligned_cols=40 Identities=38% Similarity=0.505 Sum_probs=36.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|||+|||||++|+.||+.|++.|++|+|+|++...+.-++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h 41 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH 41 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence 5999999999999999999999999999999887666544
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=82.13 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC---CCcEEeCCEEEEccCh
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKGCTIVCG---DGSREFYNSCVMALHA 269 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~~~~ad~VV~A~p~ 269 (842)
.+.+++.|++|+++++|++|+.+++++.|++. +++++.+|.||+|++.
T Consensus 218 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 268 (455)
T 1ebd_A 218 KKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR 268 (455)
T ss_dssp HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred HHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence 34455569999999999999987777777654 4567999999999864
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=8.6e-05 Score=77.94 Aligned_cols=87 Identities=9% Similarity=0.097 Sum_probs=64.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
+++|+++||+||..|+++..++++ +.+|++||+.+ +-. .+... ++|+++++|..... +.++||.|+|-..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~----~l~~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQ----SLMDT---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCH----HHHTT---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cCh----hhccC---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 579999999999999999999998 88999999874 211 12222 38999999988876 5578999999543
Q ss_pred hhhcChhhHHHHHHHHHhccccC
Q 035870 706 IEAVGHEFMEEFFGCCESLLAED 728 (842)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~Lkpg 728 (842)
.. +......+.+.|..+
T Consensus 280 ~~------p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 EK------PAKVAALMAQWLVNG 296 (375)
T ss_dssp SC------HHHHHHHHHHHHHTT
T ss_pred CC------hHHhHHHHHHHHhcc
Confidence 22 345555555555544
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.3e-05 Score=90.34 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=36.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
+||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus 6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~ 44 (478)
T 1v59_A 6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC 44 (478)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcc
Confidence 389999999999999999999999999999999999864
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.5e-05 Score=89.76 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=36.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
+||+|||||++|++||..|++.|++|+|+|+++.+||.+
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~ 45 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC 45 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCce
Confidence 479999999999999999999999999999988899854
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=72.25 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC---CCe---EEEEc-c
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQ---DLI---RLYLC-D 687 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~---~~v---~~~~~-d 687 (842)
.|+..|.++--++|+++|||+||+.|+++.++++..+. .|.|.++..+. . ...+. ..+ .|.++ |
T Consensus 60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~D 131 (269)
T 2px2_A 60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVD 131 (269)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCC
T ss_pred HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCC
Confidence 45566666655789999999999999999999887222 44555554331 0 00111 133 55557 9
Q ss_pred ccCCccCCCccEEEEcchhhhcChhh-----HHHHHHHHHhccccCc-EEEEEeec
Q 035870 688 YRQLAKANKYDRIISCEMIEAVGHEF-----MEEFFGCCESLLAEDG-LLVLQFIS 737 (842)
Q Consensus 688 ~~~~~~~~~fD~i~s~~~~~~~~~~~-----~~~~~~~~~~~LkpgG-~~~~~~~~ 737 (842)
+.++. ..++|+|+|--.=. -+... ...++.-+.++|+||| .|++-.+.
T Consensus 132 f~~~~-~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 132 VFYKP-SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp GGGSC-CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ccCCC-CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 98865 35799999953211 22111 1125666779999999 89987665
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=81.94 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC----CcEEeCCEEEEccCh
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD----GSREFYNSCVMALHA 269 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~----G~~~~ad~VV~A~p~ 269 (842)
+.+.++++|++|+++++|++|+.+++++.|++.+ |+++.||.||+|+..
T Consensus 232 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 232 WQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp HHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred HHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 3455666799999999999999887777777766 778999999999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00014 Score=76.00 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG 676 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~ 676 (842)
..++.+++... .+++.|||++||+|..++.+++. |.+++|+|+++++++.|++|++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 44556666665 78999999999999999998876 8999999999999999999998753
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=81.88 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 205 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 205 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence 5799999999999999999999999999998654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=2e-05 Score=88.20 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC--cEEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG--SREFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.+++.|++++++++|++|+. ++ +.|++.+| +++.+|.||+|++.
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~ 266 (458)
T 1lvl_A 212 SELTAPVAESLKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGR 266 (458)
T ss_dssp HHHHHHHHHHHHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCC
Confidence 45777788888888999999999999987 43 76665456 57999999999864
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=2.6e-05 Score=87.18 Aligned_cols=38 Identities=39% Similarity=0.557 Sum_probs=35.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
+||+|||||++|++||..|++.|++|+|+|++ .+||.+
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~ 41 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC 41 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence 58999999999999999999999999999997 778744
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.7e-05 Score=90.33 Aligned_cols=40 Identities=35% Similarity=0.553 Sum_probs=37.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
+||+|||||+|||+||..|++.|++|+|+|+++.+||...
T Consensus 374 ~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~ 413 (671)
T 1ps9_A 374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN 413 (671)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence 5899999999999999999999999999999999999753
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3e-05 Score=87.45 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCC-CcEEEEeCC---Cc--EEeCCEEEEccCh
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPAD-KGCTIVCGD---GS--REFYNSCVMALHA 269 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~---G~--~~~ad~VV~A~p~ 269 (842)
..+.+.+.+.++++|+++++++.|++|...+ +.+.|++.+ |+ ++.+|.||+|+..
T Consensus 225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~ 285 (488)
T 3dgz_A 225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR 285 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence 4677888888888999999999999998754 446665543 54 4789999999863
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.6e-05 Score=94.49 Aligned_cols=39 Identities=33% Similarity=0.757 Sum_probs=36.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~ 39 (842)
|||+|||||+|||+||+.|++.|+ +|+|+|+.+.+||..
T Consensus 188 ~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~ 227 (1025)
T 1gte_A 188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227 (1025)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence 589999999999999999999999 799999999999964
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00033 Score=78.85 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=41.7
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
+.+.++++|++|+++++|++|..+++++.|++.+|+++.||.||+|++.
T Consensus 232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~ 280 (493)
T 1m6i_A 232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 280 (493)
T ss_dssp HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence 3445566799999999999998877778889999999999999999874
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.7e-05 Score=87.36 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=34.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC--------CCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD--------YLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~--------~~GG~~ 39 (842)
||+|||||++||+||..|++.|++|+|+|+++ .+||.+
T Consensus 34 DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc 79 (519)
T 3qfa_A 34 DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTC 79 (519)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHH
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCccccc
Confidence 89999999999999999999999999999964 677754
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=3.3e-05 Score=86.54 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=34.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
+||+|||||++|++||..|++.|++|+|+|+++ +||.+
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~ 44 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC 44 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence 379999999999999999999999999999977 78743
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.54 E-value=5.2e-05 Score=87.72 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=35.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||+.|++.|++|+|+|+.+..||.+
T Consensus 48 dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 48 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 79999999999999999999999999999999888844
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00058 Score=76.88 Aligned_cols=34 Identities=44% Similarity=0.555 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||.+|+-.|..|++.|.+|+|+|+.++
T Consensus 195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 228 (490)
T 2bc0_A 195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT 228 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 5799999999999999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 842 | ||||
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 4e-64 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 1e-62 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 1e-58 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 7e-36 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 3e-32 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 3e-31 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 1e-27 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 2e-24 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 2e-24 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-24 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-23 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 1e-19 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 2e-17 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 5e-16 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 2e-14 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 2e-14 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-14 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-13 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-12 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 1e-11 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-11 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-10 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-10 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 2e-10 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-10 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 2e-09 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 3e-09 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 5e-09 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 6e-09 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 7e-09 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 1e-08 | |
| d1kifa1 | 246 | c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N | 2e-08 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 4e-08 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 5e-08 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 6e-08 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 7e-08 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 7e-08 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 1e-07 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 1e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-07 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 2e-07 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-07 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 2e-07 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 2e-07 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 2e-07 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 3e-07 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 3e-07 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 5e-07 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 5e-07 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 5e-07 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-07 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 8e-07 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-06 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 1e-06 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 2e-06 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 3e-06 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 4e-06 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 6e-06 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 7e-06 | |
| d1pn0a1 | 360 | c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So | 7e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 8e-06 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 1e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 2e-05 | |
| d1pj5a2 | 305 | c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox | 2e-05 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 2e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-05 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 3e-05 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 4e-05 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 6e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 7e-05 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 8e-05 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 1e-04 | |
| d1jnra2 | 356 | c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct | 1e-04 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 1e-04 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 2e-04 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 2e-04 | |
| d1ks9a2 | 167 | c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc | 2e-04 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 2e-04 | |
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 3e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 3e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 3e-04 | |
| d1chua2 | 305 | c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E | 3e-04 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 5e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 5e-04 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 5e-04 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 5e-04 | |
| d1kf6a2 | 311 | c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es | 8e-04 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 0.001 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 0.001 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 0.002 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 0.002 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 0.002 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.002 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 0.003 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 0.003 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.003 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 214 bits (546), Expect = 4e-64
Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 13/284 (4%)
Query: 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARV 627
+ L N+ HYDLS++ F LFLD + TYSCA F+ +D L+ AQ+ K+ L + K +
Sbjct: 1 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 60
Query: 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687
G +L++GCGWG + V++ G+TLS+ Q + + V + R+ L
Sbjct: 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 120
Query: 688 YRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERY---- 743
+ Q DRI+S E GHE + FF LL DG+++L I+ +
Sbjct: 121 WEQ--FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHER 178
Query: 744 -----NEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798
+ FI IFPGG LPS+ + S +++ HY +TL W
Sbjct: 179 GLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV-QSLQPHYAKTLDLW 237
Query: 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
+ + +AL ++ + Y CA F+ + Q
Sbjct: 238 SAALQANKGQAIALQS-EEVYERYMKYLTGCAEMFRIGYIDVNQ 280
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 210 bits (536), Expect = 1e-62
Identities = 83/289 (28%), Positives = 123/289 (42%), Gaps = 20/289 (6%)
Query: 570 LTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSK 629
L + HYD SNE F L+LD SMTYSCA F+ D L+ AQ K L ++K +
Sbjct: 2 LKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEP 61
Query: 630 GQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689
G +L+IGCGWG+ V G+TLSE Q + + E + + +
Sbjct: 62 GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 121
Query: 690 QLAKANKYDRIISCEMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFISIPDER 742
+ DRI+S E E + FF +L +DG ++L I+IPD+
Sbjct: 122 EF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE 179
Query: 743 YNE---------YRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQ 793
+ FI IFPGG LP +S++ S + VE+ IG +Y
Sbjct: 180 EAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVD-YYSSNAGWKVERYHRIGANYVP 238
Query: 794 TLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
TL W + + +AL + + +Y C+ F+ Q
Sbjct: 239 TLNAWADALQAHKDEAIALKG-QETCDIYMHYLRGCSDLFRDKYTDVCQ 286
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 199 bits (506), Expect = 1e-58
Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 13/272 (4%)
Query: 580 HYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCG 639
HYD+S++ F+LF D + TYSCA F+ + L+ AQ KV L ++K + G +L+IGCG
Sbjct: 3 HYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 62
Query: 640 WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDR 699
WGT V+R G+TLS+ Q E + ++ L + A DR
Sbjct: 63 WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDR 120
Query: 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYN---------EYRLSS 750
I+S E E GHE ++FF C +++ DG + +Q E
Sbjct: 121 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFI 180
Query: 751 DFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSKIL 810
FI IFPGG LPS + + V + ++ HY +TLR W + K +
Sbjct: 181 KFIVTEIFPGGRLPSTEMMVEHGE-KAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAI 239
Query: 811 ALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842
+ ++ + Y C F L
Sbjct: 240 EVTS-EEVYNRYMKYLRGCEHYFTDEMLDCSL 270
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 137 bits (346), Expect = 7e-36
Identities = 48/369 (13%), Positives = 115/369 (31%), Gaps = 14/369 (3%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTY 61
V V+G GISG+ +A +L +G+ VV+ E D +GG T+ +DLG T
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQ 60
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLRE 121
++ + LG++ + + R ++ + + FW+ + +
Sbjct: 61 NRILRLAKELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPVWNPITYLDHNNFWRTMDD 119
Query: 122 IIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGV 181
+ + + L D T+ + ++ ++E ++ + + + + E
Sbjct: 120 MGREIPSDAPWKAPLAEEWDN---MTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVS 176
Query: 182 TSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSV 241
+ + V ++ Q S + ++ G +++ V +
Sbjct: 177 ALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQV---SERIMDLLGDRVKLERPVIYI 233
Query: 242 LPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRILGAFQYVYSDIFLH 301
+ + + + A+ +KI N V+ L
Sbjct: 234 DQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRN--QMITRVFPPGILT 291
Query: 302 RDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLVTLNPDHVPEHTLL 361
+ R + Q F + + Y ++ + L + E
Sbjct: 292 QYGRVLRQP---VDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPEDEIWQS 348
Query: 362 KWSTGHPVP 370
+ +
Sbjct: 349 EPESVDVPA 357
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (322), Expect = 3e-32
Identities = 53/440 (12%), Positives = 116/440 (26%), Gaps = 26/440 (5%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
+V +IG+G+SGL +A L G++V L E D +GG T DLG MV +
Sbjct: 7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 66
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGS----RNGLSSLFAQKKNVLNPYFWQ 117
M + + +++ + G + L + + +
Sbjct: 67 NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN 126
Query: 118 MLREIIKFKDDVLGYLEELE----SNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSI 173
+L L + +L+ + I+ + + + I
Sbjct: 127 VLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELH 186
Query: 174 WSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLES------ 227
F L + + + + ++LE+
Sbjct: 187 QQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDV 246
Query: 228 ---WGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKILGNQATFDE 284
+ ++ A+ + +
Sbjct: 247 YLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALA 306
Query: 285 TRILGAFQYVYSDIFLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSL 344
+ + + ++ F+ D+ +C T L VL+ ++
Sbjct: 307 EGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLC-TLPLGVLKQ-QPPAV 364
Query: 345 PFLVTLNPDHVPEHTLLKW--STGHPVPSVAASKASLEL--DHIQGKRGIWFCGAY---Q 397
F+ L + S+G+ +A Q ++F G +
Sbjct: 365 QFVPPLPEWKTSAVQRMVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRN 424
Query: 398 GYGFHEDGLKAGMTAAHGVL 417
L +G+ A +
Sbjct: 425 YPATVHGALLSGLREAGRIA 444
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 123 bits (308), Expect = 3e-31
Identities = 47/329 (14%), Positives = 88/329 (26%), Gaps = 16/329 (4%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
M VAV+G GISGL A+ L G + VL E LGG T G ++ G F
Sbjct: 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD-R 59
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
P +L ++ + + + S ++L +
Sbjct: 60 EPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVA 119
Query: 121 EIIKFKDDVLGYLEELESNPD--------IDRSETLGQFVNSRGYSELFQKAYLIPICGS 172
+ + G E L + + + + + +L A +
Sbjct: 120 GELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKM 179
Query: 173 IWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQI 232
S + + A T ++ + L
Sbjct: 180 EREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLG---DAA 236
Query: 233 RTSSEVCSVLPADKGCTIVCGDGSREF---YNSCVMALHAPDALKILGNQATFDETRILG 289
+ V + D G ++ + R V+A A K+L ++
Sbjct: 237 HVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDD-ALAALVA 295
Query: 290 AFQYVYSDIFLHRDKRFMPQNPAAWSAWN 318
+ + + + P N
Sbjct: 296 GIYNLGHLERVAAIDAALQRLPGLHLIGN 324
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 113 bits (283), Expect = 1e-27
Identities = 53/344 (15%), Positives = 102/344 (29%), Gaps = 33/344 (9%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
RVAVIGAG+SGL +AY L G+ V ++E + GG ++V+ DG+ D G +
Sbjct: 3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE-SE 61
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLRE 121
++ +SLG+ + + + QML E
Sbjct: 62 GDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLE 121
Query: 122 IIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGV 181
I +K+ L + + + G+ V +
Sbjct: 122 PILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPEL 181
Query: 182 ----------------TSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQL 225
+ S + + + + + + K L
Sbjct: 182 WNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDL 241
Query: 226 ESWGCQIRTSSEVCSVLPADKGC-----------TIVCGDGSREFYNSCVMA--LHAPDA 272
++R +S V + + + E +++ +M L +
Sbjct: 242 --REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKS 299
Query: 273 LKILGNQATFDETRILGAFQYVYSDIFLHRDKRFMPQNPAAWSA 316
+KI F I + + Y + L + P + A
Sbjct: 300 MKIAKRGNPFLLNFIPEVYGHNYDSV-LDAIDKMEKNLPGLFYA 342
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 104 bits (258), Expect = 2e-24
Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 18/280 (6%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD--GVDLDLGFMVFNRV 59
V ++GAG++GL +AYVLA AG +V + E + GG +T + G +LG M
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE- 90
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
+ + E+ + + + + K + P
Sbjct: 91 KHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGE-VKKDPGLLKYPVKPSEAGKS 149
Query: 120 REIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSE 179
+ + L ++ + ++ E K +
Sbjct: 150 AGQLYEE-----SLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLL 204
Query: 180 GVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVC 239
S S + ++ + ++ + + ++ +++V
Sbjct: 205 NEDSGYYVSFIESLKHDDIFA--YEKRFDEIVDGMDKLPTAM---YRDIQDKVHFNAQVI 259
Query: 240 SVLPADKGCTIV----CGDGSREFYNSCVMALHAPDALKI 275
+ D+ T+V + + ++ + I
Sbjct: 260 KIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLI 299
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 103 bits (256), Expect = 2e-24
Identities = 39/276 (14%), Positives = 89/276 (32%), Gaps = 7/276 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
RV V+GAG+SG+ +A L++AG+ ++++ E D++GG F G++++LG V
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
M + + +++ + + + QK+ L +M
Sbjct: 62 GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVY-KEDGGVYDEDYVQKRIELADSVEEMGE 120
Query: 121 EIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEG 180
++ + + N Y
Sbjct: 121 KLSATLHASGRDDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 175
Query: 181 VTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240
+ + + S + R V + + Y+ K + +++ + V
Sbjct: 176 LQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVRE 235
Query: 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDALKIL 276
+ + G T+ D S + +++ L
Sbjct: 236 IKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDL 271
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 4e-24
Identities = 43/307 (14%), Positives = 92/307 (29%), Gaps = 53/307 (17%)
Query: 481 LRIHSPQFYWKVMTQADLGLADAYINGDF-----------SFVDKDEGLLNLFMILIANR 529
LR+ SP + L + D + + D + N +I +
Sbjct: 3 LRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTK 62
Query: 530 DLDSSVSKLKQKRGWWSPMLFTAGIASAKYFFRHISRQNTLTQARRNISRHYDLSNELFS 589
+S + + R I +++ Q + ++ L+ +
Sbjct: 63 SFESMQRLCDK-------------------YNRAI---DSIHQLWKGTTQPMKLNTRPST 100
Query: 590 LFLDESMTYSCAVFKSEDEDLKA-----------AQMRKVSLLIEKARVSKGQEVLEIGC 638
L + ++ E L V+ +I++ +++ +++G
Sbjct: 101 GLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGS 160
Query: 639 GWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN-- 695
G G + +++ T C + G+ ++ KYAE +E L + +
Sbjct: 161 GVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220
Query: 696 ---KYDRIISCEMIEAVGHEFMEEFFGCCESL---LAEDGLLVLQFISIPDERYNEYRLS 749
+RI + +I F E + + E G +V P R
Sbjct: 221 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNL 280
Query: 750 SDFIKEY 756
SD
Sbjct: 281 SDIGTIM 287
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 98.5 bits (244), Expect = 2e-23
Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 14/224 (6%)
Query: 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675
K + L R+ G +L++G G G + + G TGI +S A+ + +E
Sbjct: 20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL 79
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735
G+ + + D K D G L G++++
Sbjct: 80 GVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGE 137
Query: 736 ISIPDERYNEYRLSSDFIKE--YIFPGGCLPSLSRITSAMSVA----SRLCVEQVENIGI 789
Y +++ I + + +L + A + + E
Sbjct: 138 P------YWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDR 191
Query: 790 HYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGF 833
+ R+ A + + Y Y F
Sbjct: 192 YEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 235
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 87.9 bits (216), Expect = 1e-19
Identities = 40/277 (14%), Positives = 93/277 (33%), Gaps = 18/277 (6%)
Query: 573 ARRNISRHYDLSNE---LFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEK----A 625
+ N +YD + F ++ E + + ++++ A +R L +
Sbjct: 4 VKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTG 63
Query: 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL 685
+ + + L++G G+G A +V++ G + ++ Q K E +AGL D I +
Sbjct: 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 123
Query: 686 CDYRQLAKANKYDRIISCEMIEAVGHEF-MEEFFGCCESLLAEDGLLVLQFISIPDERYN 744
+ + + + +A H + F C +L G++ + D
Sbjct: 124 GSFLE--IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDK 181
Query: 745 EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFME 804
+ + SL S + + + + ++
Sbjct: 182 SSI--QPILDRIKLHD--MGSLGLYRSLAKECGLVTLR-TFSRPDSLVHHYSKVKAELIK 236
Query: 805 KQSKILALG---FNDKFIRTWEYYFDYCAAGFKSYTL 838
+ S+I + F R E++ + AG ++
Sbjct: 237 RSSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGG 273
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 2e-17
Identities = 30/276 (10%), Positives = 74/276 (26%), Gaps = 24/276 (8%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V V+G GI+ + + +L+ G +V+ +K D+ GG A +VT + ++
Sbjct: 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67
Query: 63 NMMEFFESLGVDM------------------EMSDMSFSVSLEKGHGCEWGS-RNGLSSL 103
+ VD+ +++ + + + G ++
Sbjct: 68 SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANE 127
Query: 104 FAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQK 163
+ L F + + + T+ + G ++
Sbjct: 128 IEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE 187
Query: 164 AYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRK 223
+ + S +L +C++ +L + +
Sbjct: 188 FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSP---YLYPMYGLGELPQGFAR 244
Query: 224 QLESWGCQIRTSSEVCSVLPADKG--CTIVCGDGSR 257
+G + + VL V
Sbjct: 245 LSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGT 280
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 77.5 bits (190), Expect = 5e-16
Identities = 36/261 (13%), Positives = 80/261 (30%), Gaps = 24/261 (9%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
++G+G+ G V A L K +V++ EK +++GG+A T +G+ +
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK 63
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREI 122
+ ++ +E + + S N + +
Sbjct: 64 YIWDYVND---LVEFNRFTNSPLAIYKDKLFN---------LPFNMNTFHQMWG------ 105
Query: 123 IKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVT 182
+K + + + E L + S +L+Q W ++ +
Sbjct: 106 VKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQALI-KGYTEKQWGRSAKELP 164
Query: 183 SFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVL 242
+F + + R Q + V Y + K LE ++
Sbjct: 165 AFIIKRIPVRFTFDNNY-FSDRYQGIPV----GGYTKLIEKMLEGVDVKLGIDFLKDKDS 219
Query: 243 PADKGCTIVCGDGSREFYNSC 263
A K I+ ++++
Sbjct: 220 LASKAHRIIYTGPIDQYFDYR 240
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 72.9 bits (178), Expect = 2e-14
Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 28/203 (13%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT---FDGVDLDLGFMVFN 57
++ ++GAG SG V LA+ G +V + ++ D++GG++ + + G +F
Sbjct: 3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF- 61
Query: 58 RVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQ 117
+ + M + + + P
Sbjct: 62 HTDNETVWNYVNKHAEMMPYVNRVKA--------------------TVNGQVFSLPINLH 101
Query: 118 MLREI--IKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWS 175
+ + D L + + I +T + EL++ + W
Sbjct: 102 TINQFFSKTCSPDEARALIAEKGDSTIADPQTFEEEALRFIGKELYEA-FFKGYTIKQWG 160
Query: 176 C-PSEGVTSFSAFSVLSFCRNHH 197
PSE S + F + +
Sbjct: 161 MQPSELPASILKRLPVRFNYDDN 183
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.0 bits (177), Expect = 2e-14
Identities = 25/268 (9%), Positives = 82/268 (30%), Gaps = 13/268 (4%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLG---------F 53
V V+G G++ + + +++ G +V+ +++ Y GG + ++T
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68
Query: 54 MVFNRVTYPNMMEFFESLGVDMEM---SDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNV 110
+ +F + G ++M ++++ + + G + + + +
Sbjct: 69 GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128
Query: 111 LNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPIC 170
L M + K V + + + + + +
Sbjct: 129 LASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTG 188
Query: 171 GSIWSCPSEGVTSFSAFSVLSFCRNHHL-LQLFGRPQWLTVRWRSHSYVNKVRKQLESWG 229
++ ++ ++ + + L +G+ +L + + +G
Sbjct: 189 HALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYG 248
Query: 230 CQIRTSSEVCSVLPADKGCTIVCGDGSR 257
+ V ++ + V +G
Sbjct: 249 GTYMLNKPVDDIIMENGKVVGVKSEGEV 276
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (174), Expect = 2e-14
Identities = 27/260 (10%), Positives = 58/260 (22%), Gaps = 52/260 (20%)
Query: 584 SNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLL----IEKARVSKGQEVLEIGCG 639
+ + Y + + A+M K +L +G +++IG G
Sbjct: 3 GGDEYQKHFL-PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 61
Query: 640 WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------- 692
+ + T ++ + E +K+ + +L
Sbjct: 62 PTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWE 121
Query: 693 ---------------------------KANKYDRIISCEMIEAVG--HEFMEEFFGCCES 723
D +++ +E + S
Sbjct: 122 EKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLAS 181
Query: 724 LLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783
LL G LV ++ + A+ A +EQ
Sbjct: 182 LLKPGGHLVTTVTLRLPS----------YMVGKREFSCVALEKGEVEQAVLDAG-FDIEQ 230
Query: 784 VENIGIHYYQTLRCWRKNFM 803
+ + Y T
Sbjct: 231 LLHSPQSYSVTNAANNGVCC 250
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 67.9 bits (165), Expect = 1e-13
Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 12/164 (7%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
L++ A K +++GCG G + +E+ + I + E + EM ++ GL
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLEL-AGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 678 QDLIRLYLCDYRQ-LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736
D + L D + L K D + + + G ++E + L G +++ I
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAV---VGGSGGE--LQEILRIIKDKLKPGGRIIVTAI 135
Query: 737 SIPD-----ERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSV 775
+ E + + + I G L + + S V
Sbjct: 136 LLETKFEAMECLRDLGFDVNITELNIARGRALDRGTMMVSRNPV 179
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 65.4 bits (158), Expect = 2e-12
Identities = 35/225 (15%), Positives = 77/225 (34%), Gaps = 7/225 (3%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL 677
++ L++ A + +EVL++ G G +A K L+E+ LK A ++ G
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH 62
Query: 678 QDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
Q + + + ++ + F +L + G L+L S
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHH--FPNPASFVSEAYRVLKKGGQLLLVDNS 120
Query: 738 IPDERYNEYRLSSDFI-KEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLR 796
P+ + + + +++ KE + S + A +E++ +
Sbjct: 121 APE--NDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG-FELEELHCFHKTFIFEDW 177
Query: 797 CWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNY 841
C R N ++ + L+ K ++ + G G
Sbjct: 178 CDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGES 222
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 63.6 bits (154), Expect = 1e-11
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC 686
+ V+++ G G L++ I K I K+ + ++D + Y
Sbjct: 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164
Query: 687 DYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNE 745
D R N DRI+ ++ EF S+ + ++ E
Sbjct: 165 DNRDFPGENIADRILMGYVVRT------HEFIPKALSIAKDGAIIHYHNTVPEKLMPRE 217
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.2 bits (153), Expect = 5e-11
Identities = 27/202 (13%), Positives = 70/202 (34%), Gaps = 23/202 (11%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAG 676
+S + ++ ++ KG +++G G G ++ GC G + ++ ++ +E
Sbjct: 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 677 LQDLIRLYLCDYRQLAKANKY-------DRIISCEMIEAVGHEFMEEFFGCCESLLAE-- 727
+ + + + + + + I C++I F E+ E +L
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAK 324
Query: 728 DGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENI 787
G ++ S+ Y + + E IF + ++ V +
Sbjct: 325 VGCKIISLKSLRSLTYQI----NFYNVENIF------NRLKVQRYDLK--EDSVSWTHSG 372
Query: 788 GIHYYQTL-RCWRKNFMEKQSK 808
G +Y T+ ++ ++
Sbjct: 373 GEYYISTVMEDVDESLFSPAAR 394
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 60.7 bits (146), Expect = 1e-10
Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 22/237 (9%)
Query: 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
+ LI +G VL++GCG G ++ + +Y G+ ++E + A ++ + +
Sbjct: 15 ACLIRL-YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 73
Query: 679 DLIRLYLCD--YRQLAKANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDGLL--- 731
+ D R + ++D I S E ++ L G
Sbjct: 74 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133
Query: 732 ------VLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLC----- 780
+L+ + Y++ + +++ + + S +
Sbjct: 134 VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRM 193
Query: 781 VEQVENIG---IHYYQTLRCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFK 834
V+ + +G + + + +G E Y F+
Sbjct: 194 VDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKKMGLGCLTREESEVVGIYEVVVFR 250
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 60.0 bits (144), Expect = 2e-10
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 7/145 (4%)
Query: 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG 676
+ L+I+ A VL+IG G G A+ + G+ ++E ++ A +E G
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKG 62
Query: 677 LQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDG-LLVLQF 735
++++ + +D I + + +L +DG L++
Sbjct: 63 VENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDH 120
Query: 736 ISIPDERYNEYRLSSDFIKEYIFPG 760
+ D +E+ + + P
Sbjct: 121 YAPEDPVLDEFV---NHLNRLRDPS 142
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 59.0 bits (141), Expect = 2e-10
Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 17/190 (8%)
Query: 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLI 681
V G VL CG + + G G LSE ++ + E
Sbjct: 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQ 71
Query: 682 -----------RLYLCDYRQLAKA--NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED 728
++ D+ L + A+ + E + E+L+ +
Sbjct: 72 GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131
Query: 729 GLLVLQFISIPDERY--NEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVEN 786
+L + + + ++ + + + + S A R +E
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSA-RGLKAGLER 190
Query: 787 IGIHYYQTLR 796
+ H Y R
Sbjct: 191 MDEHVYVLER 200
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 3e-10
Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 5/211 (2%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
+ + + K + VL++GCG G L++ K K G+ S E L A ++ L+D
Sbjct: 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS-EILYQAMDIIRLNKLEDT 85
Query: 681 IRLYLCDYRQLAKANKYDRIISCEM--IEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738
I L ++ + +I E + ++ LA+ G + +I
Sbjct: 86 ITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTI 145
Query: 739 PDERYNEYRLSSDFIKEYI-FPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRC 797
++ +D I + G + + + +V L + + +
Sbjct: 146 SLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCH 205
Query: 798 WRKNFMEKQSKILALGFN-DKFIRTWEYYFD 827
+ S L YFD
Sbjct: 206 TTSISDLEFSSDFTLKITRTSMCTAIAGYFD 236
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 23/195 (11%), Positives = 49/195 (25%), Gaps = 10/195 (5%)
Query: 580 HYDLSNELFSLFLDESMTYSCAVFKSED--EDLKAAQMRKVSLLIEKARVSKGQEVLEIG 637
+ + Y A + + + A SKG VLE+G
Sbjct: 2 IFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVG 61
Query: 638 CGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697
G A ++ + ++ I ++ + + + L + + +
Sbjct: 62 FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGH 121
Query: 698 DRIISCEMIEAVGHEFM----EEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFI 753
I + + LL G+ + E S
Sbjct: 122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV----LTYCNLTSWGELMKSKYSD 177
Query: 754 KEYIFPGGCLPSLSR 768
+F +P+L
Sbjct: 178 ITIMFEETQVPALLE 192
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 57.4 bits (137), Expect = 3e-09
Identities = 28/217 (12%), Positives = 58/217 (26%), Gaps = 9/217 (4%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
++A+IGAG SGLV+A L +V L+E+ GG + L +
Sbjct: 6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 65
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQML 119
T P + + D+ + +E C+ + + +
Sbjct: 66 TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHR------HTIQEYQ 119
Query: 120 REIIKFKDDVLGYLEELES-NPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPS 178
R + + ++ + + + G +
Sbjct: 120 RIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYT 179
Query: 179 EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSH 215
+ S S+ L G + +
Sbjct: 180 GYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFY 216
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 55.8 bits (133), Expect = 5e-09
Identities = 20/118 (16%), Positives = 44/118 (37%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V VIG G SGL++A A+ G V+L +K + LG ++ + V +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLR 120
F + ++ + G + + + + ++V++ ++
Sbjct: 65 PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 56.0 bits (134), Expect = 6e-09
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
V V+GAG SGL + Y L + G V + E +GG + G D+ + +
Sbjct: 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFS 68
Query: 62 PNMMEFFE 69
+++ +
Sbjct: 69 EEVLQEWN 76
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 55.7 bits (133), Expect = 7e-09
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 3 VAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
V V+GAG +GL +AY ++K V+V + E+ GG A G + +
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG---------GQLFSAMIVR 86
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEW 94
F + +GV + D V
Sbjct: 87 KPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTI 119
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.2 bits (129), Expect = 1e-08
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
++ V+G+G +G +A L K V +YEK G + +
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 62
Query: 60 TYPNMMEFFES---LGVDMEMSDM 80
T + F +G D+ + ++
Sbjct: 63 TARSDRCAFYGNVEVGRDVTVQEL 86
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 54.1 bits (129), Expect = 2e-08
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
MRV VIGAG+ GL +A + + V+
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 53.1 bits (126), Expect = 4e-08
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
RV V+G+G+ GL SA +LA+ G V + +D
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 5e-08
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK--DDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
+VA+IGAG SGL+ +L KAG++ V+ E+ DY+ G + +
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLE-------------- 49
Query: 60 TYPNMMEFFESLGVDMEMSDMSF 82
M++ GVD M+
Sbjct: 50 --QGMVDLLREAGVDRRMARDGL 70
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (127), Expect = 6e-08
Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 14/202 (6%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
+I+ + K + VL++GCG G L++ K G+ +S ++ A+ V+ G D
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDK 88
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAV--GHEFMEEFFGCCESLLAEDGLLVLQFISI 738
I L + II E + M+ + L E GL+
Sbjct: 89 ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI------F 142
Query: 739 PDE--RYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLR 796
PD+ + S + E + + V V+ VE + T
Sbjct: 143 PDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVER---NNVNTTS 199
Query: 797 CWRKNFMEKQSKILALGFNDKF 818
F KI L F F
Sbjct: 200 DKLIEFDLNTVKISDLAFKSNF 221
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 52.4 bits (124), Expect = 7e-08
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRV 59
+ + + GAGI GL A L +AG+ +V L E + +
Sbjct: 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQ-------------- 47
Query: 60 TYPNMMEFFESLGVDMEMSDMSF 82
P +E LG+ ++ +
Sbjct: 48 --PAAVEALAELGLGPALAATAI 68
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 7e-08
Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 31/194 (15%)
Query: 586 ELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEK-ARVSKGQEVLEIGCGWGTLA 644
E F FL+ S +E + ++ +K+ +I + ++L IG G G +
Sbjct: 5 ESFRRFLNHS---------TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEID 55
Query: 645 IEIVKRT-------GCKYTGITLSEEQLKYAEMKVKEAGL---------QDLIRLYLCDY 688
++I+ + + S EQ+ + V + ++ Y
Sbjct: 56 LQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRM 115
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748
+ + K+D I +M+ V + SLL + + I + +L
Sbjct: 116 LEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKM---LIIVVSGSSGWDKL 170
Query: 749 SSDFIKEYIFPGGC 762
+ + C
Sbjct: 171 WKKYGSRFPQDDLC 184
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
R+AV+G ISGL +A +L AGV+V +YE+
Sbjct: 6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 2 RVAVIGAGISGLVSAYVLAKAG-------VEVVLYEKDDYLGGH 38
+A++G+G S +A L KA + V + E G
Sbjct: 4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL 47
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 50.4 bits (119), Expect = 2e-07
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675
R S ++ A+V L++GCG G ++ + T + + E
Sbjct: 17 RTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAE 75
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735
G D ++ L D L +YD I+S ++ + + + + G ++
Sbjct: 76 G-LDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134
Query: 736 IS----IPDERYNEYRLSSDFIKEY 756
P + ++ Y
Sbjct: 135 AMDTPDFPCTVGFPFAFKEGELRRY 159
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 51.0 bits (121), Expect = 2e-07
Identities = 35/191 (18%), Positives = 56/191 (29%), Gaps = 11/191 (5%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
+IGAG +GL A LAK G V +++ +G K + G N P
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR--KILMSGGG----FCNFTNLEVTP 60
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREI 122
+ ++ + ++ E G L + +ML+
Sbjct: 61 AH--YLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSE 118
Query: 123 IKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVT 182
+ E+ I E + + +Q LI G S P G T
Sbjct: 119 CDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLIVATGG-LSMPGLGAT 175
Query: 183 SFSAFSVLSFC 193
F F
Sbjct: 176 PFGYQIAEQFG 186
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 2e-07
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDL 680
+ + K + VL++G G G L + K K GI S VK L +
Sbjct: 25 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA-VKIVKANKLDHV 83
Query: 681 IRLYLCDYRQLAKANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQFISI 738
+ + ++ + II E + + + LA DGL+ ++
Sbjct: 84 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 143
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR-V 59
V ++GAG SGL +AYV+AK ++V + E GG LG +F+ V
Sbjct: 53 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG----------SWLGGQLFSAMV 102
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSR 97
F + L + E V S+
Sbjct: 103 MRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSK 140
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 50.2 bits (119), Expect = 2e-07
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V +IG G G V+A A+ G + EK LGG V + ++ + Y
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVG----CIPSKALLHSSHMYH 61
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKK-NVLNPYFWQM 118
F + GV + ++ + + + G+ LF + K + Y +
Sbjct: 62 EAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFV 118
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 20/135 (14%), Positives = 34/135 (25%), Gaps = 3/135 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG---HAKTVTFDGVDLDLGFMVFNR 58
VIG GI G AY LAK L+E G A + + + F+
Sbjct: 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDF 65
Query: 59 VTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQM 118
+ + + + +V ++
Sbjct: 66 AMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEV 125
Query: 119 LREIIKFKDDVLGYL 133
L + D+ G
Sbjct: 126 LEKEPYASGDIFGAS 140
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 51.1 bits (121), Expect = 3e-07
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40
V +IG+G +GL +A AG +V+L EK+ GG+ K
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 50.8 bits (120), Expect = 3e-07
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40
V V+G+G +G +A +G +V+L EK+ +GG+AK
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 50.1 bits (118), Expect = 5e-07
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
V V+GAG G+ + Y LAK GV+ +L + D +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 50.0 bits (118), Expect = 5e-07
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
V V+GAG +G ++ KAG V+L +K + GG++
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS 58
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 49.2 bits (116), Expect = 5e-07
Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 23/175 (13%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG---------------HAKTVTFDGV 47
V V+G G G +A+ A G++V + E+ LGG +A +
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH 68
Query: 48 DLDLGFMVFN-RVTYPNMMEF----FESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSS 102
G + + + L + S V + +G G + S
Sbjct: 69 LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVS 128
Query: 103 LFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGY 157
L A + I + + N + +E G V RG+
Sbjct: 129 LTAGDAYEQAAPTGEK---KIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGF 180
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 49.3 bits (117), Expect = 5e-07
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 9/123 (7%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMKVKEA 675
S +I + + G ++LE+G G G ++ I+ T + E+ LK A + E
Sbjct: 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133
Query: 676 GLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735
+R D D++ + + S++ +
Sbjct: 134 YDIGNVRTSRSDIADFI----SDQMYDAVIADIPDPWNH---VQKIASMMKPGSVATFYL 186
Query: 736 ISI 738
+
Sbjct: 187 PNF 189
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.9 bits (118), Expect = 6e-07
Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 14/148 (9%)
Query: 602 VFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLS 661
V++ D ++ + L+ R VL++ CG G +I +V+ G T + S
Sbjct: 29 VWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDAS 87
Query: 662 EEQLKYAEMKVKEAGLQ--------DLIRLYLCDYRQLAKANKYDRIISCEMIEAV---- 709
++ LKYA + + + D A I +
Sbjct: 88 DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSK 147
Query: 710 -GHEFMEEFFGCCESLLAEDGLLVLQFI 736
S++ GLLV+
Sbjct: 148 GDQSEHRLALKNIASMVRPGGLLVIDHR 175
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Score = 49.9 bits (118), Expect = 8e-07
Identities = 34/254 (13%), Positives = 70/254 (27%), Gaps = 9/254 (3%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEK-DDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
VIG+G G V+A L +AG+ + E + + F G+ ++
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKT 69
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGS---RNGLSSLFAQKKNVLNPYFWQM 118
+ F G++ + + E+ G + G S + +++
Sbjct: 70 DQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEE 129
Query: 119 LREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPS 178
+ + + Y + ++ + + S + + + +
Sbjct: 130 ILPSVDSNEMYNKYFPRANTGLGVNNID--QAWFESTEWYKFARTGRKTAQRSGFTTAFV 187
Query: 179 EGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGC-QIRTSSE 237
V F + + G S Q + G I T
Sbjct: 188 PNVYDFEYMKKEAAGQVTK--SGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHR 245
Query: 238 VCSVLPADKGCTIV 251
V V PA V
Sbjct: 246 VTKVAPATGSGYSV 259
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 48.6 bits (115), Expect = 1e-06
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
Query: 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTG--CKYTGITLSEEQLKYAEMK 671
+ S + V +G +++ G G G + + + G K EE K AE
Sbjct: 88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 147
Query: 672 VKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLL 731
+ + GL + + + + D + +D + V + C L G
Sbjct: 148 LTKWGLIERVTIKVRDISE-----GFDEKDVDALFLDVPD--PWNYIDKCWEALKGGGRF 200
Query: 732 VLQFISI 738
+
Sbjct: 201 ATVCPTT 207
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 16/65 (24%), Positives = 22/65 (33%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V +IG G +G V+A A+ G EK LGG V L +
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT 67
Query: 63 NMMEF 67
+
Sbjct: 68 EAQKR 72
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Score = 48.4 bits (114), Expect = 2e-06
Identities = 30/254 (11%), Positives = 70/254 (27%), Gaps = 8/254 (3%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYE--KDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
VIG G VSA L +AGV+ ++ E + G + ++ D F T
Sbjct: 5 AVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRT 64
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSR---NGLSSLFAQKKNVLNPYFWQ 117
+ F V+ + + + G S + +++
Sbjct: 65 EAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFE 124
Query: 118 MLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCP 177
+ + + Y S + + ++ + + + + + +
Sbjct: 125 EILPRVDSSEMYDRYFPRANSM--LRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVF 182
Query: 178 SEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSE 237
V F + L + + + L + I+T +
Sbjct: 183 VPNVYDFGYMQREAAGEVPK-SALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQ 241
Query: 238 VCSVLPADKGCTIV 251
V ++ G +
Sbjct: 242 VKTIRQTKDGGYAL 255
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVT 60
++A++GAG + + A LA+ G ++ ++EK +Y+GG + + +
Sbjct: 6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65
Query: 61 YPNMMEFFESLGVDMEMSDM 80
++ + +
Sbjct: 66 KDLGVKIICGKSLSENEITL 85
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 45.8 bits (107), Expect = 4e-06
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679
+L+E V K ++L++GCG+G + I + E
Sbjct: 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNY 102
Query: 680 LIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739
IR+ D + K KY++II+ I A G E + + LL ++G + + +
Sbjct: 103 DIRVVHSDLYENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161
Query: 740 DERYNEYRLSSDF 752
+ + F
Sbjct: 162 GAKSLAKYMKDVF 174
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 46.8 bits (110), Expect = 6e-06
Identities = 50/380 (13%), Positives = 101/380 (26%), Gaps = 60/380 (15%)
Query: 3 VAVIGAGISGLVSAYVLAK------AGVEVVLYEKDDYLGGHAKT--VTFDGVDLDLGFM 54
V ++GAG +GL +A L + + V L EK ++G H + +L
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94
Query: 55 VFNRVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWG---SRNGLSSLFAQKKNVL 111
+ N + G+ E + + L S ++ L
Sbjct: 95 WKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL 154
Query: 112 NP--YFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSELFQKAYLIPI 169
Y EI+ +D + + + D + EL K +
Sbjct: 155 GVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFE----RGLELHAKVTIFA- 209
Query: 170 CGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWG 229
EG A + + + + ++ + + G
Sbjct: 210 ---------EGCHGHLAKQLY--KKFDLRANCEPQGGFQSIPKLTFPGGLLI-------G 251
Query: 230 CQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDAL-KILGNQATFDETRIL 288
C + T S L + + K +G T E +
Sbjct: 252 C------SPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLK 305
Query: 289 GAFQYVYSDIFLHRDKRFMPQNPAAWSAWNFLESFDSKVCLTYWLNVLQNLGETSLPFLV 348
++ V+ +++ R+ R P+ + + + P+
Sbjct: 306 NSW--VWKELYSVRNIR-----PSCHGILGVYGGMI-------YTGIFYWIFRGMEPW-- 349
Query: 349 TLNPDHVPEHTLLKWSTGHP 368
TL + LK +
Sbjct: 350 TLK-HKGSDSDQLKPAKDCT 368
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 46.7 bits (109), Expect = 7e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
VIG G++GL +A + G+ ++ H
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Score = 46.6 bits (109), Expect = 7e-06
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 3 VAVIGAGISGLVSAYVLA-----KAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFN 57
V ++GAG +GL++A VL+ K ++V + +K + +
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ------------ 57
Query: 58 RVTYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQ 117
+E ++LG+ ++ + +S + + + ++ Y
Sbjct: 58 ----CRTLESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQV 113
Query: 118 MLR 120
+L
Sbjct: 114 VLH 116
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 45.8 bits (107), Expect = 8e-06
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 1/152 (0%)
Query: 607 DEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLK 666
D+ + + + L++ CG G L + + + LS+E L
Sbjct: 15 RADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLS 73
Query: 667 YAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA 726
AE K + GL+ + + + + + ++++F + L
Sbjct: 74 EAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133
Query: 727 EDGLLVLQFISIPDERYNEYRLSSDFIKEYIF 758
E G+ + S ++ + +F
Sbjct: 134 EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVF 165
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 44.5 bits (104), Expect = 1e-05
Identities = 15/129 (11%), Positives = 41/129 (31%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
R+ ++G+G + +A A+A ++ +L+E D++ +
Sbjct: 7 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 66
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLRE 121
+ + F + + +V+ + ++ A + +
Sbjct: 67 VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEP 126
Query: 122 IIKFKDDVL 130
KF D +
Sbjct: 127 ATKFLDGGV 135
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 45.3 bits (106), Expect = 2e-05
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 10/168 (5%)
Query: 618 VSLLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKE 674
VS L+ +++K +++ GCG+G L + ++ G KYTGI E L A +
Sbjct: 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 74
Query: 675 AGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734
+L +KYD I + E + + G ++
Sbjct: 75 LPYDSEFLEGDATEIEL--NDKYDIAICHAFLLH--MTTPETMLQKMIHSVKKGGKIICF 130
Query: 735 ---FISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779
+IS + S+FI+ + R ++ ++
Sbjct: 131 EPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKI 178
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (103), Expect = 2e-05
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
++ ++G+G +G +A A+A ++ VL + G T + D + +
Sbjct: 7 KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLME 66
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGH 90
M E ++ D V L+
Sbjct: 67 -RMHEHATKFETEIIF-DHINKVDLQNRP 93
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33
R+ +IGAGI G A L G + + ++
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 13/126 (10%), Positives = 32/126 (25%), Gaps = 5/126 (3%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
IG G G+ S A G + L E + G + +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIRE----- 59
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREI 122
+ + G D ++ ++ + ++ + + F + +
Sbjct: 60 AIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK 119
Query: 123 IKFKDD 128
+
Sbjct: 120 TLEVNG 125
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 3e-05
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC--KYTGITLSEEQLKYAEMKVKEA 675
+++++ ++ G VLE G G G +++ + K G + + ++ A+ K
Sbjct: 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW 146
Query: 676 GLQDLI 681
+
Sbjct: 147 RDSWKL 152
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39
VIGAG +G+ +A ++++G L K H
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT 46
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.3 bits (101), Expect = 4e-05
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
+G+ V ++G G G L+ + + + + +E + + E + ++++ D
Sbjct: 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF--KVFIGDV 103
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFF 718
+ + D +I + F
Sbjct: 104 SEFNS--RVDIVIMNPPFGSQRKHADRPFL 131
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 6e-05
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 6/117 (5%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTY 61
V VIG G+ G A V A G VVL ++ + + +K + + + F
Sbjct: 6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPK 64
Query: 62 PNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQM 118
++L +D + V H + + +L + + +
Sbjct: 65 AGDEFVEKTLSTIATSTDAASVV-----HSTDLVVEAIVENLKVKNELFKRLDKFAA 116
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 6/173 (3%)
Query: 587 LFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIE 646
++ L+ + Y +++ E +KA ++ V + ++ + + VL++ CG G +E
Sbjct: 1 MYELYTLLAEYYD-TIYRRRIERVKA-EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLE 58
Query: 647 IVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706
+ +R + G+ L EE L+ A K KE L+ N++D +
Sbjct: 59 LAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF--KNEFDAVTMFFST 115
Query: 707 EAVGHEF-MEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIF 758
E + + F L G+ + F + + ++ E
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKL 168
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 2/108 (1%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVT--FDGVDLDLGFMVFNRVT 60
V VIGAG G V+A A+ G++ L EK G + + ++ +
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYK 65
Query: 61 YPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGLSSLFAQKK 108
+ E F+ G+ + + + G++SL
Sbjct: 66 FHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANG 113
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 1 MRVAVIGAGISGLVSAYVLAK--AGVEVVLYEKDDYL 35
M+V V+G+ G + L E+ YEK D++
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 3 VAVIGAGISGLVSAYVLAK----AGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR 58
+ +IG G SG +AY A G++V L EK A ++ + +
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSE 83
Query: 59 V--TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEWGSRNGL 100
T + + + + + D+ + + GL
Sbjct: 84 RQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGL 127
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 13/66 (19%), Positives = 21/66 (31%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
+ +IG G G V+A + G+ VL E G L F++ +
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67
Query: 63 NMMEFF 68
Sbjct: 68 TEPSPL 73
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
+ AV+GAGI G AY A G +++ + ++
Sbjct: 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36
IG G +G + L G ++ ++ +LG
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
M++ V+G G G + L K G EV + +
Sbjct: 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36
V+GAG G V+A A+ G +V + EK + G
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG 39
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32
MR+++ G G G V A L+ G EV+ +
Sbjct: 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33
AV+G G G A LA G V+ ++ D
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 40.9 bits (95), Expect = 3e-04
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 603 FKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLS 661
KS+ L AA ++ + ++ + + ++L +G GT + I +
Sbjct: 55 NKSK---LAAAIIKGLKVM----PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYA 107
Query: 662 EEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCC 721
++ E I ++ A + +I ++ E
Sbjct: 108 PRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV---AQPNQAEILIKNA 164
Query: 722 ESLLAEDGLLV 732
+ L + G +
Sbjct: 165 KWFLKKGGYGM 175
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
V +IG+G +GL A LA +V++ K G
Sbjct: 10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS 44
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36
VIG G GL SA A+ G + E G
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGG 39
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
+ +LE+G G + + T + SEE + +A+ ++ +D I +
Sbjct: 20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRF 73
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748
+YD I+ ++E + + + + LAE G L F+ P+ ++
Sbjct: 74 EDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRL---FLVCPNANAVSRQI 129
Query: 749 SSDFIKEYIFP 759
+
Sbjct: 130 AVKMGIISHNS 140
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (91), Expect = 5e-04
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38
+AV+GAG +GL A A G +V L++ +GG
Sbjct: 45 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ 81
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36
+ VIG G G+ +A A+ +V L EK G
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG 37
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 8e-04
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 3 VAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHA 39
+A++GAG +GL +A A+A ++ L K + H
Sbjct: 8 LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT 46
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.5 bits (88), Expect = 0.001
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD-DYLGGHAKTVTFDGVDLDLGFMVFNRV 59
M V+++GAG G + L G EV ++ + D + + + L +
Sbjct: 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF 60
Query: 60 TYPNMMEFFESLGVDMEMSDMSFSVSLEKGHGCEW 94
+ + E+ V + + +
Sbjct: 61 WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYL 95
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (89), Expect = 0.001
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKT 41
+ +IG G GL +A AK +V++ +
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNW 44
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.5 bits (88), Expect = 0.002
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 2 RVAVIGAGISGLVSAYVLAKAGVE---VVLYEKDDYLGG 37
R+ ++G G +G +A V A + E V + + D +GG
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGG 40
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 38.3 bits (88), Expect = 0.002
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 14/128 (10%)
Query: 633 VLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691
+E+G G G + K+ Y GI + + L YA KV E G+ ++ L+ D L
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLW-VDGSDL 93
Query: 692 AKANKYDRIISCEMIEAVGH---------EFMEEFFGCCESLLAEDGLLVLQFISIPDER 742
+ I + + + F + +L E+G + +
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEI---HFKTDNRG 150
Query: 743 YNEYRLSS 750
EY L S
Sbjct: 151 LFEYSLVS 158
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 24/144 (16%), Positives = 55/144 (38%)
Query: 607 DEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLK 666
D+ +++ L E + L+ G G G + ++ + + ++E+ L
Sbjct: 38 SIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV 97
Query: 667 YAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLA 726
A+ + E G + + + YD I +I + + + EF C+ L
Sbjct: 98 QAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 157
Query: 727 EDGLLVLQFISIPDERYNEYRLSS 750
+G++V++ + + SS
Sbjct: 158 PNGIIVIKDNMAQEGVILDDVDSS 181
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.4 bits (89), Expect = 0.002
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC--KYTGITLSEEQLKYAEMKVKEA 675
+ ++ + + G VLE G G G L + +++ G + + ++A V
Sbjct: 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 144
Query: 676 GLQ--DLIRLYLCDYRQL-AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLV 732
Q D RL + D DR + +M+ E ++ LL G+L+
Sbjct: 145 YGQPPDNWRLVVSDLADSELPDGSVDRAV-LDMLAP--WEVLDA----VSRLLVAGGVLM 197
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 3 VAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYP 62
V ++G+G +G +A A+ G+ L + G T D + +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERF---GGQILDTVDIENYISVPKTEGQKLAG 60
Query: 63 NMMEFFESLGVDMEMSDMSFSVSLEKGHGCEW 94
+ + VD+ S + + G
Sbjct: 61 ALKVHVDEYDVDVIDSQSASKLIPAAVEGGLH 92
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.4 bits (86), Expect = 0.003
Identities = 16/130 (12%), Positives = 35/130 (26%)
Query: 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688
G+ V++ G G G LA T + + ++ A+ +
Sbjct: 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGK 107
Query: 689 RQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL 748
N + A + E A+ + + S + + E ++
Sbjct: 108 YDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVFREEKV 167
Query: 749 SSDFIKEYIF 758
+ Y
Sbjct: 168 YITVPRIYRH 177
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.8 bits (87), Expect = 0.003
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQ 678
L + ++ + VL +G GT + + S + + + +
Sbjct: 47 LKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL---ELVRER 103
Query: 679 DLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737
+ I L D + K + + + +E E L E G +V+ +
Sbjct: 104 NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 842 | |||
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.95 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.94 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.91 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.9 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 99.86 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.84 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.8 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.79 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.78 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.78 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.78 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.77 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.77 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.76 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.76 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.75 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 99.75 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.74 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.73 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.72 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.71 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.7 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.7 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.66 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.65 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.64 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 99.63 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.62 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 99.61 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.58 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.57 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.57 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.54 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.54 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.53 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.52 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.52 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.5 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.5 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.49 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.49 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.48 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.46 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.45 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.44 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.44 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.43 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.42 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.41 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.41 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.4 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.38 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.34 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.33 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.29 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.29 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.23 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.21 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.2 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.18 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.16 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.16 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.15 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.14 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.13 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.12 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.12 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.11 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.08 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.07 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.07 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.05 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.04 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.04 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.02 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.99 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.95 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 98.92 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.88 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.87 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.86 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.84 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.84 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.83 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.81 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 98.79 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.79 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.77 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.77 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.75 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.73 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.69 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.69 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.68 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.65 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 98.63 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.63 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.61 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.58 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.57 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.56 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.55 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.55 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.54 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.51 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.5 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.49 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.49 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.48 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.48 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.48 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.47 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 98.45 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.44 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.41 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.41 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.4 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.39 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.39 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.38 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.37 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.36 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.35 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.35 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.35 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.34 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.33 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.33 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.33 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.32 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.31 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.31 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.29 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.26 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.25 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.23 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.22 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.15 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.15 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.13 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.1 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.1 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.07 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.06 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.06 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.05 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.05 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.04 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 98.0 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.98 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.96 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.93 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.92 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.92 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.88 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.83 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.78 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 97.78 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.74 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.68 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.64 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.55 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 97.55 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.49 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.49 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.48 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 97.47 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.44 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.43 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.34 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.31 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.3 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.24 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.11 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.1 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.07 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.07 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.06 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.05 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.05 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.05 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.99 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.91 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.9 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.8 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.78 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.7 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.61 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.59 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.41 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.27 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.27 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.23 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.18 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 96.17 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.1 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.06 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.04 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.03 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.98 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.96 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.88 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.84 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.81 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.53 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.5 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.49 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.44 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 95.41 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.19 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.04 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.02 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.83 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.82 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.77 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.69 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.66 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.51 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.27 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.21 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.2 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.12 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.02 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.81 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.75 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.65 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.57 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.5 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.45 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 93.4 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 93.31 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.96 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 92.89 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.84 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 92.69 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 92.68 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.66 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 92.52 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 92.48 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.37 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.35 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 92.14 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.89 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.83 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 91.76 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.72 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.64 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 91.51 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 91.22 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 91.17 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.16 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.62 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.48 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.45 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.39 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 90.24 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 90.12 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.01 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.51 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.27 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 89.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.26 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.13 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.13 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.98 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 88.96 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 88.94 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 88.87 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.28 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.24 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.2 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 88.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 88.04 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 88.0 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 87.77 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 87.65 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 87.56 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 87.55 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.42 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 87.37 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.27 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 87.15 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.15 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 87.1 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 87.07 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 86.88 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 86.87 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.63 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.56 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.36 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.28 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.17 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.13 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.99 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.77 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.52 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 85.4 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 85.36 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 85.21 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 84.91 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 84.73 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.57 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 84.34 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 84.33 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.25 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 84.21 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 84.2 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 83.9 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 83.58 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.37 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 83.37 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 83.2 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 82.99 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.91 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.76 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 82.71 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 82.64 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 82.53 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 82.53 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 82.49 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 82.42 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 82.3 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 82.24 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 82.19 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 81.87 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 81.6 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.55 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.86 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 80.72 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 80.49 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.45 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.44 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.16 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=6.6e-59 Score=479.83 Aligned_cols=271 Identities=31% Similarity=0.541 Sum_probs=252.0
Q ss_pred CchHHhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHH
Q 035870 568 NTLTQARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEI 647 (842)
Q Consensus 568 ~~~~~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l 647 (842)
|+.+.+.+||++|||++|+||++|||++|+||||||+++.++|++||.+|++.++++++++||++|||||||||++++++
T Consensus 1 ~~~~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~ 80 (285)
T d1kpga_ 1 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRA 80 (285)
T ss_dssp CCSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHH
T ss_pred CCCCccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhcccc
Q 035870 648 VKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAE 727 (842)
Q Consensus 648 a~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkp 727 (842)
|++.|++|+||++|++|++.|++++++.|+.+++++..+|+++++ ++||.|+|++|+||++++++..+|++++++|||
T Consensus 81 a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp 158 (285)
T d1kpga_ 81 VEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA 158 (285)
T ss_dssp HHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT
T ss_pred HhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999987 799999999999999988899999999999999
Q ss_pred CcEEEEEeecCCCcccc---------cccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHH
Q 035870 728 DGLLVLQFISIPDERYN---------EYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCW 798 (842)
Q Consensus 728 gG~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w 798 (842)
||++++++++....... ......+||++||||++.+||+.++.+.+++ +||+|+++++++.||++|++.|
T Consensus 159 gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~-agf~v~~~~~~~~hYarTl~~W 237 (285)
T d1kpga_ 159 DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASA-NGFTVTRVQSLQPHYAKTLDLW 237 (285)
T ss_dssp TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHH
T ss_pred CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHH-hchhhcccccchhhHHHHHHHH
Confidence 99999999985443211 1123467999999999999999999988876 8999999999999999999999
Q ss_pred HHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 799 RKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 799 ~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+++|.++++++.++ ++++|.|+|++||++|+++|+.|.++++|
T Consensus 238 ~~~f~~~~~ei~~~-~~~~~~rrw~~Yl~~c~~~F~~g~~~v~q 280 (285)
T d1kpga_ 238 SAALQANKGQAIAL-QSEEVYERYMKYLTGCAEMFRIGYIDVNQ 280 (285)
T ss_dssp HHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 99999999999999 45777799999999999999999999988
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7.9e-59 Score=480.74 Aligned_cols=267 Identities=31% Similarity=0.491 Sum_probs=249.3
Q ss_pred HhhhhhhhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc
Q 035870 572 QARRNISRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT 651 (842)
Q Consensus 572 ~~~~~i~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~ 651 (842)
.+.++|++|||++|+||++|||++|+|||+||+++.++|++||.+|++.+++++++++|++|||||||||++++++|++.
T Consensus 4 ~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~ 83 (291)
T d1kpia_ 4 PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY 83 (291)
T ss_dssp CCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred CcHhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcCh-------hhHHHHHHHHHhc
Q 035870 652 GCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGH-------EFMEEFFGCCESL 724 (842)
Q Consensus 652 ~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~-------~~~~~~~~~~~~~ 724 (842)
+++|+|+|+|++|++.|+++++..++.+++++...|++..+ ++||.|+|++|+||+++ ++++.+|++++++
T Consensus 84 g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~ 161 (291)
T d1kpia_ 84 DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFD--EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL 161 (291)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCC--CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHT
T ss_pred CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccc--cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654 89999999999999986 5789999999999
Q ss_pred cccCcEEEEEeecCCCccccc---------ccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHH
Q 035870 725 LAEDGLLVLQFISIPDERYNE---------YRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTL 795 (842)
Q Consensus 725 LkpgG~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl 795 (842)
|||||++++++++.++..+.. .....+|+++||||++.+||+.++...+++ +||+|+++++++.||++|+
T Consensus 162 LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~-~gl~v~~~~~~~~hYa~TL 240 (291)
T d1kpia_ 162 TPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSN-AGWKVERYHRIGANYVPTL 240 (291)
T ss_dssp SCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHH-HTCEEEEEEECGGGHHHHH
T ss_pred CCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcc-cccccceeeeccccHHHHH
Confidence 999999999999987765432 122456999999999999999999988876 8999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 796 RCWRKNFMEKQSKILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 796 ~~w~~~~~~~~~~~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
..|+++|.++++++.++ ++++|.|||++||++||++|+.|.++|+|
T Consensus 241 ~~W~~~f~~~~~ei~~l-~g~~~~r~W~~yl~~ce~~F~~~~~~v~q 286 (291)
T d1kpia_ 241 NAWADALQAHKDEAIAL-KGQETCDIYMHYLRGCSDLFRDKYTDVCQ 286 (291)
T ss_dssp HHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 99999999999999999 56889999999999999999999999988
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3e-57 Score=468.61 Aligned_cols=261 Identities=30% Similarity=0.480 Sum_probs=242.8
Q ss_pred hhhhcCChHHHHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEE
Q 035870 578 SRHYDLSNELFSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTG 657 (842)
Q Consensus 578 ~~~Yd~~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~g 657 (842)
++|||++|+||++|||++|+||||||+++.++|++||.+|++.++++++++||++|||||||||+++.+++++++++|+|
T Consensus 1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~g 80 (280)
T d2fk8a1 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIG 80 (280)
T ss_dssp GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEE
T ss_pred CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 658 ITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 658 id~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+|+|++|++.|++++++.++..++.+...|+++++ ++||.|+|++|++|+++++++.+|++++++|||||++++++++
T Consensus 81 i~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 81 LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence 99999999999999999999989999999999887 8999999999999999989999999999999999999999887
Q ss_pred CCCcccccc---------cCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHHHHHhHHH
Q 035870 738 IPDERYNEY---------RLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKNFMEKQSK 808 (842)
Q Consensus 738 ~~~~~~~~~---------~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~~~~~~~~ 808 (842)
..+...... ....+||++||||++.+||++++.+.+++ +||++.++++++.||++||++|+++|++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~-aGf~v~~~~~~~~hYa~TL~~W~~~f~~~~~~ 237 (280)
T d2fk8a1 159 SYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEK-AGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDK 237 (280)
T ss_dssp CCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHH-TTCBCCCCEECHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHh-hccccceeeecccCHHHHHHHHHHHHHHHHHH
Confidence 654322111 12458999999999999999999998887 89999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHhcccCcccccC
Q 035870 809 ILALGFNDKFIRTWEYYFDYCAAGFKSYTLGNYQ 842 (842)
Q Consensus 809 ~~~~g~~~~~~r~w~~y~~~~~~~f~~~~~~~~q 842 (842)
+.++++ ++|.|+|++||++||++|++|.|+++|
T Consensus 238 i~~~~~-~~~~r~w~~yl~~c~~~F~~~~~~~~q 270 (280)
T d2fk8a1 238 AIEVTS-EEVYNRYMKYLRGCEHYFTDEMLDCSL 270 (280)
T ss_dssp HHHHSC-HHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHhcC-HHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 999965 566688999999999999999999987
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.96 E-value=6.4e-28 Score=251.39 Aligned_cols=239 Identities=17% Similarity=0.233 Sum_probs=195.6
Q ss_pred HhhhhhhhhhcC--ChHHHHhcc-CCCCcccccccCCC--cccHHHHHHHHHHHHHHHc----CCCCCCeEEEeccCchH
Q 035870 572 QARRNISRHYDL--SNELFSLFL-DESMTYSCAVFKSE--DEDLKAAQMRKVSLLIEKA----RVSKGQEVLEIGCGWGT 642 (842)
Q Consensus 572 ~~~~~i~~~Yd~--~~~~~~~~l-~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l----~~~~~~~vLDiGcG~G~ 642 (842)
..++++..+||. ++.||+..+ +++++| |+|..+ ..++.+|+.+..+.+++.+ .++++.+|||||||+|.
T Consensus 3 ~~~~~~~~~y~~~~~~~fy~~~w~g~~~h~--G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~ 80 (282)
T d2o57a1 3 TVKDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGG 80 (282)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSH
T ss_pred hHHHHHHHhcCCchhHHHHHHHcCCCCcee--eecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcH
Confidence 456789999997 789997644 677776 788654 4567888877776666554 68899999999999999
Q ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHH
Q 035870 643 LAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCC 721 (842)
Q Consensus 643 ~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~ 721 (842)
++..++++++++|+|+|+|+.|++.|+++....|+.++++++++|+.+++ ++++||+|+|+.+++|+++ +..+|+++
T Consensus 81 ~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d--~~~~l~~~ 158 (282)
T d2o57a1 81 AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD--KLKVFQEC 158 (282)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC--HHHHHHHH
T ss_pred HHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccC--HHHHHHHH
Confidence 99999998889999999999999999999999999999999999999998 7799999999999999986 88999999
Q ss_pred HhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecCccHHHHHHHHHHH
Q 035870 722 ESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIGIHYYQTLRCWRKN 801 (842)
Q Consensus 722 ~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~~~y~~tl~~w~~~ 801 (842)
+++|||||++++.++...+..... ....+...+..+ .+++..++.+.+.+ +||+...+.+...++..++..|...
T Consensus 159 ~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~s~~~~~~~l~~-~Gf~~i~~~d~~~~~~~~~~~~~~~ 233 (282)
T d2o57a1 159 ARVLKPRGVMAITDPMKEDGIDKS--SIQPILDRIKLH--DMGSLGLYRSLAKE-CGLVTLRTFSRPDSLVHHYSKVKAE 233 (282)
T ss_dssp HHHEEEEEEEEEEEEEECTTCCGG--GGHHHHHHHTCS--SCCCHHHHHHHHHH-TTEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHhcCCCcEEEEEEeecCCCCchh--HHHHHHHHhccC--CCCCHHHHHHHHHH-cCCceEEEEECcHhHHHHHHHHHHH
Confidence 999999999999887655433221 122344444333 45788888877776 8999999999888888999999999
Q ss_pred HHHhHHHHHhccCCHHHHH
Q 035870 802 FMEKQSKILALGFNDKFIR 820 (842)
Q Consensus 802 ~~~~~~~~~~~g~~~~~~r 820 (842)
+..+..++... ..+++..
T Consensus 234 ~~~~~~~~~~~-~~~e~~~ 251 (282)
T d2o57a1 234 LIKRSSEIASF-CSPEFQA 251 (282)
T ss_dssp HHHTHHHHTTT-SCHHHHH
T ss_pred HHHHHHHHHhh-cCHHHHH
Confidence 99988888765 4444433
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.95 E-value=1.4e-26 Score=246.37 Aligned_cols=266 Identities=18% Similarity=0.166 Sum_probs=164.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
|||+|||||++||+||++|+++|++|+||||++++||+++|.+.+|+.+|.|++++. ..++.+.++++++++.......
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 79 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFL-DREPATRALAAALNLEGRIRAA 79 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEE-TTCHHHHHHHHHTTCGGGEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEe-cCCHHHHHHHHHhcccccceec
Confidence 899999999999999999999999999999999999999999999999999999995 4788899999999988665322
Q ss_pred eee----EeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcC
Q 035870 81 SFS----VSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRG 156 (842)
Q Consensus 81 ~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~ 156 (842)
... ............ .. ............ .....................++.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (347)
T d2ivda1 80 DPAAKRRYVYTRGRLRSVP--AS---PPAFLASDILPL-----------GARLRVAGELFSRRAPEGVDESLAAFGRRH- 142 (347)
T ss_dssp CSSCCCEEEEETTEEEECC--CS---HHHHHTCSSSCH-----------HHHHHHHGGGGCCCCCTTCCCBHHHHHHHH-
T ss_pred cccccceeeeccccccccc--cc---hhhhhhhhhccc-----------hhhHHHHhhhhhhhccccccccHHHHHHhh-
Confidence 110 000000000000 00 000000000000 000000111111122222456777777765
Q ss_pred CCHHHHHHHHHHhhhcccCCCchhhccCCHHH-HHHH--------------Hhh--c----cccccCCCCceEEecCChh
Q 035870 157 YSELFQKAYLIPICGSIWSCPSEGVTSFSAFS-VLSF--------------CRN--H----HLLQLFGRPQWLTVRWRSH 215 (842)
Q Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~~~~--------------~~~--~----~~~~~~~~~~~~~~~gG~~ 215 (842)
....+......++....+.............. +... ... . .............++||++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (347)
T d2ivda1 143 LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQ 222 (347)
T ss_dssp TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTH
T ss_pred hhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccccccCcccccCCchH
Confidence 34444444555555544444433221100000 0000 000 0 0111223456788999999
Q ss_pred HHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCC-C--cEEeCCEEEEccChHHHHHhhcCCCChHHHHhc
Q 035870 216 SYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGD-G--SREFYNSCVMALHAPDALKILGNQATFDETRIL 288 (842)
Q Consensus 216 ~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~-G--~~~~ad~VV~A~p~~~~~~ll~~~~~~~~~~~l 288 (842)
.++++|++.+ |++|++|++|++|+.++++++|++.+ | +++.||+||+|+|++.+.+|+++ ..+...+.+
T Consensus 223 ~~~~~l~~~~---g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~-~~~~~~~~~ 294 (347)
T d2ivda1 223 VLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP-LDDALAALV 294 (347)
T ss_dssp HHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHh---hcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccC-CCHHHHHHh
Confidence 9999999988 89999999999999999987766543 3 36899999999999999999886 444444433
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.6e-25 Score=243.22 Aligned_cols=254 Identities=18% Similarity=0.198 Sum_probs=168.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee-CCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF-DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
||||||||++||+||++|+++|++|+||||++++||+++|.+. +|+.+|.|++++++ .++++.++++++|++......
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~~~ 79 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILRLAKELGLETYKVNE 79 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT-TCHHHHHHHHHTTCCEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC-CChHHHHHHHHcCCcceeccC
Confidence 8999999999999999999999999999999999999999875 78999999999964 778899999999998665432
Q ss_pred eeeE-eccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCC-------CCCccccHHHHH
Q 035870 81 SFSV-SLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNP-------DIDRSETLGQFV 152 (842)
Q Consensus 81 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~l 152 (842)
.... ...+.....+... .... .............+... .......... ...+..++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (383)
T d2v5za1 80 VERLIHHVKGKSYPFRGP--FPPV-------WNPITYLDHNNFWRTMD---DMGREIPSDAPWKAPLAEEWDNMTMKELL 147 (383)
T ss_dssp SSEEEEEETTEEEEECSS--SCCC-------CSHHHHHHHHHHHHHHH---HHHTTSCTTCGGGSTTHHHHHTSBHHHHH
T ss_pred ccceEEecCccccccccc--ccch-------hhhhhhhhHHHHHHHHH---HhhhhcccccccchhhhhhhhhhHHHHHH
Confidence 2222 2222222222211 1000 11111111111111111 1111100000 001356888888
Q ss_pred HhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhcc----ccccCCCCceEEecCChhHHHHHHHHHhhhc
Q 035870 153 NSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHH----LLQLFGRPQWLTVRWRSHSYVNKVRKQLESW 228 (842)
Q Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~ 228 (842)
......+.. ..+........+...+... ++........... .........++.+.+|++.+++.+++..
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 220 (383)
T d2v5za1 148 DKLCWTESA-KQLATLFVNLCVTAETHEV---SALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL--- 220 (383)
T ss_dssp HHHCSSHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH---
T ss_pred HHhccchHH-HHHHHHhhhhhhccccchh---hHHHHHHHHHhhcccccccccccCcceeeeccchhHHHHHHHHHc---
Confidence 887666554 3344444445555444443 3333333332211 1122344567889999999999998866
Q ss_pred CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHHHh
Q 035870 229 GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDALKI 275 (842)
Q Consensus 229 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~~l 275 (842)
|++|++|++|++|..++++|.|++.+|+++.||+||+|+|+..+.++
T Consensus 221 g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~ 267 (383)
T d2v5za1 221 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKI 267 (383)
T ss_dssp GGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGS
T ss_pred CCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhC
Confidence 89999999999999999999999999999999999999998877665
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.91 E-value=2.7e-23 Score=223.88 Aligned_cols=253 Identities=15% Similarity=0.138 Sum_probs=147.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee--CCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF--DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|+|+|||||+|||+||++|+++|++|+|||+++++||++.|.+. .|+.+|.|++++. ..++.+.++++++++.....
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~-~~~~~~~~l~~~~~~~~~~~ 109 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLP-EKHRIVREYIRKFDLRLNEF 109 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEE-TTCHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeec-CccHHHHHHHHHhCCcccee
Confidence 68999999999999999999999999999999999999999876 5799999999984 47788899999999876542
Q ss_pred cce--eeEeccCCCceeeCC---CCCCcchhhhhhccCC--hH-HHHHHHHHHhhhHH--HHHHHHhhcCCCCCCccccH
Q 035870 79 DMS--FSVSLEKGHGCEWGS---RNGLSSLFAQKKNVLN--PY-FWQMLREIIKFKDD--VLGYLEELESNPDIDRSETL 148 (842)
Q Consensus 79 ~~~--~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~ 148 (842)
... ....+..+....... ................ .. +............. ....... .+..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 182 (370)
T d2iida1 110 SQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNK-------YDTYST 182 (370)
T ss_dssp CSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHH-------HTTSBH
T ss_pred eccCCceEEecCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh-------ccchhH
Confidence 211 111111111111000 0000000000000000 00 00000111100000 0000000 034566
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhc
Q 035870 149 GQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESW 228 (842)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~ 228 (842)
.+++.............+... ....... ..+......... .......+..+.+|+..++++|++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~--- 248 (370)
T d2iida1 183 KEYLIKEGDLSPGAVDMIGDL----LNEDSGY--YVSFIESLKHDD-----IFAYEKRFDEIVDGMDKLPTAMYRDI--- 248 (370)
T ss_dssp HHHHHHTSCCCHHHHHHHHHH----TTCGGGT--TSBHHHHHHHHH-----HHTTCCCEEEETTCTTHHHHHHHHHT---
T ss_pred HHHHHHhccccHHHHHHhhcc----ccccchh--hhHHHhhhhhhh-----hhccccccccchhhHHHHHHHHHHhc---
Confidence 666665543322222222211 1111111 111111111000 01234567889999999999998766
Q ss_pred CceEEeCCCeeEEEeCCCcEEEEe----CCCcEEeCCEEEEccChHHHHHh
Q 035870 229 GCQIRTSSEVCSVLPADKGCTIVC----GDGSREFYNSCVMALHAPDALKI 275 (842)
Q Consensus 229 G~~i~~~~~V~~I~~~~~~v~V~~----~~G~~~~ad~VV~A~p~~~~~~l 275 (842)
|++|++|++|++|..++++++|+. .+++++.||+||+|+|+.++.++
T Consensus 249 g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i 299 (370)
T d2iida1 249 QDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLI 299 (370)
T ss_dssp GGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTS
T ss_pred CCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhC
Confidence 899999999999999999987764 34568999999999999877654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.90 E-value=5.1e-23 Score=219.58 Aligned_cols=77 Identities=35% Similarity=0.553 Sum_probs=71.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
|+|+|||||+|||+||++|+++|++|+|||+++++||+++|.+.+|+.+|.|+++++ ..++.+.++++++++.....
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMT-ESEGDVTFLIDSLGLREKQQ 78 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBC-CCSHHHHHHHHHTTCGGGEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEe-CCCHHHHHHHHHhCCccccc
Confidence 899999999999999999999999999999999999999999999999999999996 47889999999999876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=8.3e-23 Score=207.69 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=136.7
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
..+++.+.+.+.++||++|||||||+|.++..++++.+++|+|||+|+.|++.|+++.+..|+.++++++++|+.++.++
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~ 98 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence 46778899999999999999999999999999998878999999999999999999999999998999999999998777
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHh
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMS 774 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 774 (842)
++||+|+|.++++|+++ +..++++++++|||||++++.+........... ....+ ...+...+.+..++...+.
T Consensus 99 ~~fD~v~~~~~~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~ 172 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE--IAQAC--GVSSTSDFLTLPGLVGAFD 172 (245)
T ss_dssp SCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH--HHHTT--TCSCGGGSCCHHHHHHHHH
T ss_pred CceeEEEEEehhhccCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChHH--HHHHh--ccCCCcccCCHHHHHHHHH
Confidence 89999999999999987 799999999999999999998765433221100 00000 0112223567788888887
Q ss_pred hcCCcEEEEEEecC
Q 035870 775 VASRLCVEQVENIG 788 (842)
Q Consensus 775 ~~~gf~v~~~~~~~ 788 (842)
+ +||++.......
T Consensus 173 ~-aG~~~v~~~~~~ 185 (245)
T d1nkva_ 173 D-LGYDVVEMVLAD 185 (245)
T ss_dssp T-TTBCCCEEEECC
T ss_pred H-cCCEEEEEEeCC
Confidence 6 899987766543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=5.4e-23 Score=207.51 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=139.4
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
+.++++.++++++++|||||||+|.++..++++ +++|+|+|+|++|++.|+++++..+.+ +++++++|+.+++ ++++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccccccccc
Confidence 467888999999999999999999999999987 789999999999999999999998875 8999999999998 7899
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhh-cccCCCCCCCHHHHHHHHhh
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKE-YIFPGGCLPSLSRITSAMSV 775 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~p~~~~~~~~~~~~~~~~ 775 (842)
||+|+|..+++|+++ +..++++++++|||||++++.+...+..... .....++.+ ...+.....+..++.+.+++
T Consensus 82 fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAF--DVFYNYVEKERDYSHHRAWKKSDWLKMLEE 157 (231)
T ss_dssp EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH--HHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred cccccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhcccCcccCCCHHHHHHHHHH
Confidence 999999999999987 8999999999999999999988776543211 111112222 12233345677888888877
Q ss_pred cCCcEEEEEEecCccHHHHHHHHHHHHH
Q 035870 776 ASRLCVEQVENIGIHYYQTLRCWRKNFM 803 (842)
Q Consensus 776 ~~gf~v~~~~~~~~~y~~tl~~w~~~~~ 803 (842)
+||++++++.+... ..+..|.+++.
T Consensus 158 -aGf~~~~~~~~~~~--~~~~~~~~~~~ 182 (231)
T d1vl5a_ 158 -AGFELEELHCFHKT--FIFEDWCDRMN 182 (231)
T ss_dssp -HTCEEEEEEEEEEE--EEHHHHHHHTT
T ss_pred -CCCEEEEEEEeecC--CchHHHHHHhc
Confidence 89999887765332 23445655443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=2.9e-22 Score=202.24 Aligned_cols=178 Identities=18% Similarity=0.246 Sum_probs=139.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
+.++.+++.++++||++|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+++ ++.++++|+.+++ ++
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCT
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccc-cccccccccccccccc
Confidence 45678899999999999999999999999999987 789999999999999999999998885 7999999999998 78
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC-CCCCCHHHHHHHH
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG-GCLPSLSRITSAM 773 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~-~~~~~~~~~~~~~ 773 (842)
++||+|+|..+++|+++ +..++++++++|||||++++.+...+...... .....+.++..|. ....+..++...+
T Consensus 81 ~~fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T d1xxla_ 81 DSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLD--EFVNHLNRLRDPSHVRESSLSEWQAMF 156 (234)
T ss_dssp TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHCTTCCCCCBHHHHHHHH
T ss_pred cccceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHH--HHHHHHHhhCCCcccccCCHHHHHHHH
Confidence 99999999999999987 89999999999999999999877655432110 0011122222232 2334677777777
Q ss_pred hhcCCcEEEEEEecCccHHHHHHHHHHHH
Q 035870 774 SVASRLCVEQVENIGIHYYQTLRCWRKNF 802 (842)
Q Consensus 774 ~~~~gf~v~~~~~~~~~y~~tl~~w~~~~ 802 (842)
.+ +||.+.+++.+... .++..|.++.
T Consensus 157 ~~-~gf~~~~~~~~~~~--~~~~~w~~~~ 182 (234)
T d1xxla_ 157 SA-NQLAYQDIQKWNLP--IQYDSWIKRG 182 (234)
T ss_dssp HH-TTEEEEEEEEEEEE--EEHHHHHHHH
T ss_pred HH-CCCceeEEEEeeCc--cCHHHHHHHc
Confidence 76 89998887764332 2445665543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=2.6e-21 Score=199.44 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=143.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeC------------------------CeeeecceEeec
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFD------------------------GVDLDLGFMVFN 57 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~------------------------g~~~d~G~~~~~ 57 (842)
||||||||++||+||++|+++|++|+||||++.+||+++|...+ ++.+|.+++.+.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 86 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLM 86 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccCccccc
Confidence 89999999999999999999999999999999999999987643 244556665552
Q ss_pred CCCchhHHHHHHHcCCCccccc--ceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHh
Q 035870 58 RVTYPNMMEFFESLGVDMEMSD--MSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEE 135 (842)
Q Consensus 58 ~~~~~~~~~l~~~lGl~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (842)
.......++...+....... ......+.++....++. .....+. .......... .+.++......+...
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (297)
T d2bcgg1 87 --ANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPA--NEIEAIS--SPLMGIFEKR---RMKKFLEWISSYKED 157 (297)
T ss_dssp --TTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCS--SHHHHHH--CTTSCHHHHH---HHHHHHHHHHHCBTT
T ss_pred --CCCcceeeeeeccccccccccccCcccccccCCcccccc--chhhhhh--ccccccccch---hhhhhhhhhhhhhhc
Confidence 22233344434333222111 11111222333222221 0000110 0111111111 111111111111111
Q ss_pred hc--CCCCCCccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHH-hhccccccCCCCceEEecC
Q 035870 136 LE--SNPDIDRSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFC-RNHHLLQLFGRPQWLTVRW 212 (842)
Q Consensus 136 ~~--~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 212 (842)
.. ......+..++.+++...+..+.+.+.+. ............. .++...+..+ ...........+.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 233 (297)
T d2bcgg1 158 DLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIG-HAMALWTNDDYLQ---QPARPSFERILLYCQSVARYGKSPYLYPMY 233 (297)
T ss_dssp BGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHH-HHTSCCSSSGGGG---SBHHHHHHHHHHHHHHHHHHSSCSEEEETT
T ss_pred cccchhhhcccchhhhhhhhhhccCHHHHHHHH-HHHhhhccccccc---hhhhhhhhhhhhhhhcccccccCcceeccC
Confidence 00 11111245689999999888776544332 3222222222222 2332221111 1100111123456889999
Q ss_pred ChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC--cEEEEeCCCcEEeCCEEEEccChH
Q 035870 213 RSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK--GCTIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 213 G~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
|+++++++|++.++++|++|++|++|++|..+++ ++.+.+.+|+++.||+||++ |.+
T Consensus 234 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~-~s~ 292 (297)
T d2bcgg1 234 GLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD-PTY 292 (297)
T ss_dssp CTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC-GGG
T ss_pred cHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC-hhh
Confidence 9999999999999999999999999999987643 46655678889999999987 544
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.84 E-value=4.2e-21 Score=200.45 Aligned_cols=57 Identities=35% Similarity=0.695 Sum_probs=54.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCceeEeeCCeeeecceEeecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNR 58 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~ 58 (842)
||+|||||+|||+||++|+++|+ +|+||||++++||+++|.+.+|+.+|.|+++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~ 59 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEG 59 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEE
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEec
Confidence 79999999999999999999996 7999999999999999999999999999999853
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.1e-20 Score=185.33 Aligned_cols=149 Identities=15% Similarity=0.248 Sum_probs=120.2
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEc
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISC 703 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~ 703 (842)
....++.+|||||||+|.++..+++..+.+|+|+|+|++|++.|++++...+.. +++++++|+++++ ++++||+|++.
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTPEPDSYDVIWIQ 134 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-ccccccccccccccccccccccccc
Confidence 345677899999999999999987765679999999999999999998877654 7899999999988 67899999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
.+++|++++....++++++++|||||.+++.+....+....... ......+..++.+.+.+ +||+++.
T Consensus 135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~-aGf~ii~ 202 (222)
T d2ex4a1 135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV-----------DSSVCRDLDVVRRIICS-AGLSLLA 202 (222)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETT-----------TTEEEEBHHHHHHHHHH-TTCCEEE
T ss_pred cccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccC-----------CceeeCCHHHHHHHHHH-cCCEEEE
Confidence 99999998777899999999999999999987665443211000 01122467788777776 8999887
Q ss_pred EEe
Q 035870 784 VEN 786 (842)
Q Consensus 784 ~~~ 786 (842)
.+.
T Consensus 203 ~~~ 205 (222)
T d2ex4a1 203 EER 205 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.79 E-value=6.7e-19 Score=178.93 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=134.7
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
+.+++.+++.+..+|||||||+|.++..++++ ++.+++++|+ +++++.+++++.+.++.++++++.+|+.+..+ .+|
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~ 147 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKA 147 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cch
Confidence 56778888888899999999999999999998 6889999998 67999999999999999999999999876433 579
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcC
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVAS 777 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~ 777 (842)
|+|++..++||++++....+|++++++|||||++++.+...+...........--+.-....++..++.+++.+.+++ +
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~-A 226 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS-A 226 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH-T
T ss_pred hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHH-C
Confidence 999999999999998888999999999999999999876544332111100000112233456777899999888887 8
Q ss_pred CcEEEEEEecC
Q 035870 778 RLCVEQVENIG 788 (842)
Q Consensus 778 gf~v~~~~~~~ 788 (842)
||+++++..+.
T Consensus 227 Gf~~~~v~~~~ 237 (253)
T d1tw3a2 227 GLVVEEVRQLP 237 (253)
T ss_dssp TEEEEEEEEEE
T ss_pred CCeEEEEEECC
Confidence 99998887753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=8.9e-19 Score=175.47 Aligned_cols=121 Identities=20% Similarity=0.372 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 614 q~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
+...++.++.+ .++++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|++++...+. ++.++++|+.+++
T Consensus 23 ~~~~~~~~~~~-~l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 23 RIETLEPLLMK-YMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHHHHHH-SCCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCS
T ss_pred HHHHHHHHHHH-hcCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc--cccccccccccccc
Confidence 34444555555 3568889999999999999999987 88999999999999999999988774 5789999999998
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
++++||+|+|..+++|++++++..+++++.++|||||++++...+.
T Consensus 99 ~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 99 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 7789999999999999987778999999999999999999976653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=8.1e-21 Score=199.88 Aligned_cols=244 Identities=14% Similarity=0.106 Sum_probs=158.0
Q ss_pred eEEEEeChHHHHHHhhcCCchhhHHHHcCceeeccChhhHHHHHHHHHHccCCcchhhhhhhccCCCcchhhhhhhhhHH
Q 035870 479 TVLRIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDEGLLNLFMILIANRDLDSSVSKLKQKRGWWSPMLFTAGIASAK 558 (842)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (842)
++|++++|....+++.+..+++||+||+|.+++.+ .++.+..+...... .............. ...+.
T Consensus 1 ~~lrl~sP~~~~~~~~~~~l~~~e~~~d~~~ei~~-------~i~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~ 68 (328)
T d1nw3a_ 1 LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIE-------TIRWVCEEIPDLKL--AMENYVLIDYDTKS---FESMQ 68 (328)
T ss_dssp CEEEECCTTSCCCEEEESSCCEEETTEEHHHHHHH-------HHHHHHHHCHHHHH--HHSSSCCSCCCTTC---HHHHH
T ss_pred CeEEEeCCccccceeecCCccchhhcCCcHHHHHH-------HHHHHHHhchhhhH--HHHHHHHHhcCCcc---HHHHH
Confidence 47899999999999999999999999999887643 23333222110000 00000000000000 00001
Q ss_pred HHHhhhcc-cCchHHhhhhhhhhhcCChHHHHhccCCC--Cccccc---------ccCCCcccHHHHHHHHHHHHHHHcC
Q 035870 559 YFFRHISR-QNTLTQARRNISRHYDLSNELFSLFLDES--MTYSCA---------VFKSEDEDLKAAQMRKVSLLIEKAR 626 (842)
Q Consensus 559 ~~~~~~~~-~~~~~~~~~~i~~~Yd~~~~~~~~~l~~~--~~ys~~---------~~~~~~~~l~~aq~~~~~~l~~~l~ 626 (842)
..+...-+ -+......+++..||+..++++..+++.. +.|+++ |+........+++..+++.+++.++
T Consensus 69 ~~~~~~n~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~e~~~~~~~~~~~~~~ 148 (328)
T d1nw3a_ 69 RLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIK 148 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCSSCCCCHHHHHHHHHHHHHHHCSCGGGGGCSCSSSTTCCCCCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHhcccccHHHHHHHHhhhhhhccCCHHHhccccCCCCCchhhhHHHHHHHHHHHcC
Confidence 11110000 01223456677777776555444444332 234433 3333445667788889999999999
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHc-------CC-CCCeEEEEccccCCc-cCCC
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEA-------GL-QDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~-------~l-~~~v~~~~~d~~~~~-~~~~ 696 (842)
++++++|||||||+|.++..+|+..++ +++|||+|+++++.|+++.++. |+ ..+++++++|+.+.+ .+..
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence 999999999999999999999988554 7999999999999998876542 22 247999999999887 3333
Q ss_pred --ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 697 --YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 697 --fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.|+|+++. +.|.++ +...++++.+.|||||++++....
T Consensus 229 ~~advi~~~~-~~f~~~--~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 229 ANTSVIFVNN-FAFGPE--VDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp HHCSEEEECC-TTTCHH--HHHHHHHHHTTCCTTCEEEESSCS
T ss_pred CcceEEEEcc-eecchH--HHHHHHHHHHhCCCCcEEEEeccc
Confidence 46677654 455544 789999999999999999885433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=1.1e-18 Score=176.79 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc
Q 035870 610 LKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR 689 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 689 (842)
+..++....+.+++.+...++.+|||+|||+|.++..++.+...+|+++|+|+.|++.|+++.... .+++++++|+.
T Consensus 74 ~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~ 150 (254)
T d1xtpa_ 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASME 150 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGG
T ss_pred cchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccc
Confidence 445556666788888888888999999999999999988775679999999999999999887543 26899999999
Q ss_pred CCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHH
Q 035870 690 QLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSR 768 (842)
Q Consensus 690 ~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 768 (842)
+++ ++++||+|++..+++|+++++...+|++++++|||||.+++.+............. .+....+..+
T Consensus 151 ~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~----------d~~~~rs~~~ 220 (254)
T d1xtpa_ 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKE----------DSSLTRSDIH 220 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETT----------TTEEEBCHHH
T ss_pred ccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceeccc----------CCceeCCHHH
Confidence 998 67899999999999999998888999999999999999999876544322111000 0112236777
Q ss_pred HHHHHhhcCCcEEEEEEe
Q 035870 769 ITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 769 ~~~~~~~~~gf~v~~~~~ 786 (842)
+.+.+.+ +||+++..+.
T Consensus 221 ~~~l~~~-aGf~ii~~~~ 237 (254)
T d1xtpa_ 221 YKRLFNE-SGVRVVKEAF 237 (254)
T ss_dssp HHHHHHH-HTCCEEEEEE
T ss_pred HHHHHHH-cCCEEEEEEe
Confidence 8777776 8999877654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=9.5e-19 Score=178.34 Aligned_cols=121 Identities=26% Similarity=0.415 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 613 AQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 613 aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
++...+..++.....+++.+|||||||+|.++..++++ +.+|+|||+|++|++.|++++...++ +++++++|+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~ 101 (251)
T d1wzna1 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA 101 (251)
T ss_dssp HHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccc--cchheehhhhhcc
Confidence 34556677888888888899999999999999999997 88999999999999999999998776 6999999999999
Q ss_pred cCCCccEEEEc-chhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KANKYDRIISC-EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~-~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+++||+|+|. .+++|+..+++..++++++++|||||++++...
T Consensus 102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 66799999996 588888877789999999999999999998654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.77 E-value=2.3e-18 Score=174.70 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
..+..++.... .++.+|||||||+|.++..++++ +.+|+|+|+|++|++.|++++...++ +++++++|+.+++.++
T Consensus 25 ~~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~ 100 (246)
T d1y8ca_ 25 DFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINR 100 (246)
T ss_dssp HHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSC
T ss_pred HHHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcccc
Confidence 33444444433 34579999999999999999998 88999999999999999999988876 6999999999998668
Q ss_pred CccEEEEc-chhhhcC-hhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISC-EMIEAVG-HEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~-~~~~~~~-~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|+|. .+++|+. .+++..+|++++++|||||.+++...
T Consensus 101 ~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999986 6788874 45788999999999999999998654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.76 E-value=5.6e-18 Score=165.43 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=102.8
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEE
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRII 701 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~ 701 (842)
+..+...++.+|||||||+|..+..++++ +.+|+|+|+|+++++.++++.+..+++ ++++...|+.+++++++||+|+
T Consensus 23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I~ 100 (198)
T d2i6ga1 23 LAAAKVVAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFIL 100 (198)
T ss_dssp HHHHTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEEE
T ss_pred HHHcccCCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEEE
Confidence 33344334459999999999999999998 899999999999999999999999886 7999999999988778999999
Q ss_pred EcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 702 SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 702 s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+..+++|++++....+++++.++|||||++++.....
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999999998889999999999999999999976654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.76 E-value=4.2e-18 Score=170.10 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~ 703 (842)
.+|+.+|||||||+|..+..+++. ++++|+|+|+|++|++.|+++++..+...++++..+|+.+.+. ..+|.|+++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEe
Confidence 578899999999999999999975 6889999999999999999999988877789999999988763 589999999
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER 742 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~ 742 (842)
.+++|++.+++..++++++++|||||.+++.++..+...
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~ 154 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT 154 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSH
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccc
Confidence 999999988899999999999999999999888766543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.5e-18 Score=171.22 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=111.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
.|+.+|||||||+|.++..++ +++|||+|+.|++.|+++ +++++++|+++++ ++++||+|+|+.++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccc
Confidence 456799999999999887763 468999999999999875 5899999999998 77899999999999
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
+|+++ +..++++++++|||||++++.++.......... .........+.+..+++..++.+.+.+ +||++.++..
T Consensus 102 ~h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~l~~~l~~-~Gf~~i~v~~ 176 (208)
T d1vlma_ 102 CFVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREY--EKNKEKSVFYKNARFFSTEELMDLMRK-AGFEEFKVVQ 176 (208)
T ss_dssp GGSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHH--HHTTTC-CCSTTCCCCCHHHHHHHHHH-TTCEEEEEEE
T ss_pred ccccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhh--hhccccccccccccCCCHHHHHHHHHH-cCCeEEEEEE
Confidence 99976 899999999999999999998876543221111 111112222344567899999888887 8998877665
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.75 E-value=3.1e-18 Score=167.91 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=120.6
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC-----------CCCeEEEEc
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL-----------QDLIRLYLC 686 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l-----------~~~v~~~~~ 686 (842)
++..+..+.++|+.+|||+|||+|..+.++|++ |.+|||+|+|+.|++.|+++++..+. ...++++++
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 345577788999999999999999999999998 99999999999999999999865432 135688999
Q ss_pred cccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCC
Q 035870 687 DYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLP 764 (842)
Q Consensus 687 d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~ 764 (842)
|+.+++ ....||.|++..+++|++++....+++++.++|||||++++........... . | ....
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~----~---------p-~~~~ 153 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE----G---------P-PFSV 153 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS----S---------C-CCCC
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC----C---------c-cccC
Confidence 998887 4578999999999999999889999999999999999998876654433211 0 1 0123
Q ss_pred CHHHHHHHHhhcCCcEEEEEEec
Q 035870 765 SLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 765 ~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
+.+++.+.+ . .+|++..++..
T Consensus 154 ~~~el~~l~-~-~~~~i~~~~~~ 174 (201)
T d1pjza_ 154 PQTWLHRVM-S-GNWEVTKVGGQ 174 (201)
T ss_dssp CHHHHHHTS-C-SSEEEEEEEES
T ss_pred CHHHHHHHh-C-CCcEEEEEEEe
Confidence 566665543 3 58887766653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.75 E-value=2.3e-18 Score=180.51 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=150.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEee---CCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTF---DGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~---~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
|+|+|||||+|||+||+.|+++|++|+|+|+++++||++.|... ++...+.|+|.++. ..+.+.++++++.- ...
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t-~~~~v~~~~~~~~~-~~~ 80 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT-DNETVWNYVNKHAE-MMP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHHTTSC-EEE
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecC-ccHHHHHHHHHhhh-hhh
Confidence 78999999999999999999999999999999999999999863 67889999999964 67788888887642 222
Q ss_pred ccceeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCC
Q 035870 78 SDMSFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGY 157 (842)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 157 (842)
...... ...+|+.+.++. .+..+.........+... ...+... ......+..++.+|+.+. +
T Consensus 81 ~~~~~~-~~~~g~~~~~P~--~~~~i~~~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~n~ee~~~~~-~ 142 (314)
T d2bi7a1 81 YVNRVK-ATVNGQVFSLPI--NLHTINQFFSKTCSPDEA-------------RALIAEK-GDSTIADPQTFEEEALRF-I 142 (314)
T ss_dssp CCCCEE-EEETTEEEEESC--CHHHHHHHTTCCCCHHHH-------------HHHHHHH-SCCSCSSCCBHHHHHHHH-H
T ss_pred hccccc-eeecceeeccCc--cHHHHHHhcccccchHHH-------------HHHHHHh-hhcccCCchhhhHHHHHh-c
Confidence 211121 223455554432 111111111111111111 1111111 112223567899998877 7
Q ss_pred CHHHHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhh-ccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCC
Q 035870 158 SELFQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRN-HHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSS 236 (842)
Q Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~ 236 (842)
++.+.+.++.|+..+.|+.++.+++...+ .+.... ..-...+.......|++|..++++.|.+. .+++|.+++
T Consensus 143 G~~lye~f~~pYt~K~Wg~~~~~L~~~~~---~r~p~r~~~d~~yf~d~~q~~Pk~Gyt~~~e~mL~~---~~i~v~ln~ 216 (314)
T d2bi7a1 143 GKELYEAFFKGYTIKQWGMQPSELPASIL---KRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNH---ENIKVDLQR 216 (314)
T ss_dssp CHHHHHHHTHHHHHHHHSSCGGGSBGGGC---CSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCS---TTEEEEESC
T ss_pred hhhhHHhhcCcchhhhhccCCcccchhhh---hccceeccccccccchhhheeecccHHHHHHHHHhC---CCCeeeccc
Confidence 89999999999999999999998843211 110000 00011222333367789999998887643 378888887
Q ss_pred CeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHHH
Q 035870 237 EVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDAL 273 (842)
Q Consensus 237 ~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~~ 273 (842)
.+. +++...+|+||.|.|.+...
T Consensus 217 ~~~--------------~~~~~~~d~vI~TgpiD~~f 239 (314)
T d2bi7a1 217 EFI--------------VEERTHYDHVFYSGPLDAFY 239 (314)
T ss_dssp CCC--------------GGGGGGSSEEEECSCHHHHT
T ss_pred ccc--------------ccccccceeEEEeccHHHHh
Confidence 741 34456789999999988554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.74 E-value=1.4e-17 Score=165.98 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=114.3
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
.+.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++. .++++++++|+.+++.+++||+|++..++||
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQLPRRYDNIVLTHVLEH 93 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccccccccccccccceeEe
Confidence 5669999999999999999987 789999999999999999874 2479999999999887789999999999999
Q ss_pred cChhhHHHHHHHHH-hccccCcEEEEEeecCCCcccc------cccCccchhhh-cccCCCCCCCHHHHHHHHhhcCCcE
Q 035870 709 VGHEFMEEFFGCCE-SLLAEDGLLVLQFISIPDERYN------EYRLSSDFIKE-YIFPGGCLPSLSRITSAMSVASRLC 780 (842)
Q Consensus 709 ~~~~~~~~~~~~~~-~~LkpgG~~~~~~~~~~~~~~~------~~~~~~~~~~~-~i~p~~~~~~~~~~~~~~~~~~gf~ 780 (842)
+.+ +..++++++ ++|||||.+++........... .......+... ...++....+..++.+.+.+ +||+
T Consensus 94 ~~d--~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~-~Gf~ 170 (225)
T d2p7ia1 94 IDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR-AGLQ 170 (225)
T ss_dssp CSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH-TTCE
T ss_pred cCC--HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH-CCCE
Confidence 976 889999998 8999999999976543321100 00000111111 11223345578888877776 8999
Q ss_pred EEEEEec
Q 035870 781 VEQVENI 787 (842)
Q Consensus 781 v~~~~~~ 787 (842)
+++.+.+
T Consensus 171 i~~~~~~ 177 (225)
T d2p7ia1 171 VTYRSGI 177 (225)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9887753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.73 E-value=1.1e-17 Score=169.89 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=97.8
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEc
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISC 703 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~ 703 (842)
-.+++.+|||||||+|..+..+++...++|+|||+|++|++.|+++....+...++.+.++|+...+ ..++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 3678999999999999999999887446899999999999999999998887778999999986654 56789999999
Q ss_pred chhhhc--ChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 704 EMIEAV--GHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 704 ~~~~~~--~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.++||+ +.+.+..++++++++|||||++++...
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 999998 345678999999999999999998654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.72 E-value=2.8e-17 Score=166.56 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=131.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~f 697 (842)
..+++.+++.+..+|||||||+|.++..++++ ++.+++++|+ +++++.+++++++.++.++++++.+|+.+..+ .+|
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-~~~ 148 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTA 148 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc-ccc
Confidence 46677778888889999999999999999998 6889999998 78999999999999999999999999876333 569
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcc-cccccCccchhhhcccCCCCCCCHHHHHHHHhhc
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDER-YNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVA 776 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 776 (842)
|+|++..++|+++++....+|++++++|||||+++|.+...+... ........--+.-..+.++...+.+++.+.+++
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~- 227 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGS- 227 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHT-
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHH-
Confidence 999999999999998889999999999999999999876543321 111000000111122345677799999888876
Q ss_pred CCcEEEEEEecCc
Q 035870 777 SRLCVEQVENIGI 789 (842)
Q Consensus 777 ~gf~v~~~~~~~~ 789 (842)
+||++++++..+.
T Consensus 228 AGf~~~~~~~~~~ 240 (256)
T d1qzza2 228 AGLALASERTSGS 240 (256)
T ss_dssp TTEEEEEEEEECC
T ss_pred CCCceeEEEEeCC
Confidence 8999998887654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=9.7e-18 Score=171.38 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=133.1
Q ss_pred ChHHHHhccCCCCcccccccCCCcccHHHHHH--HHHHHHHHHcC--CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEc
Q 035870 584 SNELFSLFLDESMTYSCAVFKSEDEDLKAAQM--RKVSLLIEKAR--VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGIT 659 (842)
Q Consensus 584 ~~~~~~~~l~~~~~ys~~~~~~~~~~l~~aq~--~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid 659 (842)
++++|+.++++. .|...||..........+. ...+.+.+.+. ..++.+|||||||+|.++..++.....+|+|+|
T Consensus 3 ~~~~y~~~f~~~-~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD 81 (257)
T d2a14a1 3 GGDEYQKHFLPR-DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSD 81 (257)
T ss_dssp CHHHHHHHCCHH-HHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEE
T ss_pred CcchHHhhcChH-HHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEec
Confidence 467777777765 6666666554443333222 22233334333 357889999999999998888776445799999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC----------------------------e-EEEEcccc----CCc-cCCCccEEEEcch
Q 035870 660 LSEEQLKYAEMKVKEAGLQDL----------------------------I-RLYLCDYR----QLA-KANKYDRIISCEM 705 (842)
Q Consensus 660 ~s~~~~~~a~~~~~~~~l~~~----------------------------v-~~~~~d~~----~~~-~~~~fD~i~s~~~ 705 (842)
+|+.|++.|+++++..+.... + .....+.. ..+ +.++||+|++..+
T Consensus 82 ~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 161 (257)
T d2a14a1 82 FTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA 161 (257)
T ss_dssp SCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred CCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhh
Confidence 999999999999876543210 0 11111211 112 5689999999999
Q ss_pred hhhcCh--hhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEE
Q 035870 706 IEAVGH--EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQ 783 (842)
Q Consensus 706 ~~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~ 783 (842)
+||++. +.+..+++++.++|||||++++.++..... +.... ..++ ....+.+++.+.+++ +||++++
T Consensus 162 l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~-~~~~~--------~~~~-~~~~~~~~~~~~l~~-aGf~v~~ 230 (257)
T d2a14a1 162 MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YMVGK--------REFS-CVALEKGEVEQAVLD-AGFDIEQ 230 (257)
T ss_dssp HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEETT--------EEEE-CCCCCHHHHHHHHHH-TTEEEEE
T ss_pred HHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc-ceecc--------cccc-ccCCCHHHHHHHHHH-CCCEEEE
Confidence 999973 457899999999999999999987754332 11110 0111 233578899888887 9999999
Q ss_pred EEecCccHH
Q 035870 784 VENIGIHYY 792 (842)
Q Consensus 784 ~~~~~~~y~ 792 (842)
++....+|.
T Consensus 231 ~~~~~~~~~ 239 (257)
T d2a14a1 231 LLHSPQSYS 239 (257)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 987766653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=2.9e-17 Score=158.16 Aligned_cols=112 Identities=21% Similarity=0.316 Sum_probs=101.2
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCc
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKY 697 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~f 697 (842)
..++.++.++++++|||||||+|.+++.+|+. +.+|+++|+|+++++.|+++++++|+.++++++++|+.+.. ....|
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence 46778899999999999999999999999987 78999999999999999999999999889999999988776 55899
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|.|++....++ ...+++.+.+.|||||++++..+
T Consensus 102 D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 102 DIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 99999876654 57889999999999999998654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=9.1e-17 Score=160.48 Aligned_cols=151 Identities=18% Similarity=0.144 Sum_probs=119.9
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC----------------CCCCeE
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG----------------LQDLIR 682 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~----------------l~~~v~ 682 (842)
+.+.+.+.++++.+|||+|||+|..+.++|++ |.+|||||+|+.+++.|+++..... ...+++
T Consensus 35 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 34556667889999999999999999999998 9999999999999999998865321 124789
Q ss_pred EEEccccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCC
Q 035870 683 LYLCDYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPG 760 (842)
Q Consensus 683 ~~~~d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 760 (842)
++++|+.+++ ..+.||+|++..+++|++.+..+.+++++.++|||||++++..+........ .. |
T Consensus 114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~----gp--------p- 180 (229)
T d2bzga1 114 LYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP----GP--------P- 180 (229)
T ss_dssp EEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC----CS--------S-
T ss_pred EEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC----CC--------C-
Confidence 9999998886 5689999999999999998889999999999999999999887765432211 00 1
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEEEe
Q 035870 761 GCLPSLSRITSAMSVASRLCVEQVEN 786 (842)
Q Consensus 761 ~~~~~~~~~~~~~~~~~gf~v~~~~~ 786 (842)
...+.+++.+.+. .+|+++.++.
T Consensus 181 -~~~~~~el~~lf~--~~~~i~~le~ 203 (229)
T d2bzga1 181 -FYVPHAEIERLFG--KICNIRCLEK 203 (229)
T ss_dssp -CCCCHHHHHHHHT--TTEEEEEEEE
T ss_pred -CCCCHHHHHHHhc--CCCEEEEEEE
Confidence 2246777776664 3788766654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=7.4e-17 Score=161.36 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=116.5
Q ss_pred HHhccCCCCcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHH
Q 035870 588 FSLFLDESMTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKY 667 (842)
Q Consensus 588 ~~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~ 667 (842)
+...+++.|.+..|..++. +-.++.+.+. .++|++|||+|||+|.+++.+++. |++|+|+|+|+.+++.
T Consensus 89 ~~i~i~pg~aFGTG~H~TT--------~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~ 157 (254)
T d2nxca1 89 IPLVIEPGMAFGTGHHETT--------RLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQ 157 (254)
T ss_dssp EEEECCCC-----CCSHHH--------HHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHH
T ss_pred eEEEEccccccCccccchh--------hHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHH
Confidence 4678899999877764331 1222233222 468999999999999999988876 8999999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCccccccc
Q 035870 668 AEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR 747 (842)
Q Consensus 668 a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 747 (842)
|+++++.+++. +++.++|..+..+.++||+|+++...+. +..+++++.++|||||+++++.+...
T Consensus 158 A~~na~~n~~~--~~~~~~d~~~~~~~~~fD~V~ani~~~~-----l~~l~~~~~~~LkpGG~lilSgil~~-------- 222 (254)
T d2nxca1 158 AEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTGILKD-------- 222 (254)
T ss_dssp HHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCHHH-----HHHHHHHHHHHEEEEEEEEEEEEEGG--------
T ss_pred HHHHHHHcCCc--eeEEeccccccccccccchhhhcccccc-----HHHHHHHHHHhcCCCcEEEEEecchh--------
Confidence 99999999984 6889999876556689999999855543 57889999999999999999765321
Q ss_pred CccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 748 LSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 748 ~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
...++.+.+.+ .||++.+....+
T Consensus 223 -----------------~~~~v~~~~~~-~Gf~~~~~~~~~ 245 (254)
T d2nxca1 223 -----------------RAPLVREAMAG-AGFRPLEEAAEG 245 (254)
T ss_dssp -----------------GHHHHHHHHHH-TTCEEEEEEEET
T ss_pred -----------------hHHHHHHHHHH-CCCEEEEEEEEC
Confidence 13455666666 799987766543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=5.6e-17 Score=164.44 Aligned_cols=111 Identities=20% Similarity=0.330 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
+.+..++... .+++.+|||||||+|.++..+++. +++|+|+|+|+.|++.|+++. . ..++.+|+++++ ++
T Consensus 30 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~ 100 (246)
T d2avna1 30 RLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPS 100 (246)
T ss_dssp HHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCT
T ss_pred HHHHHHHHHh-cCCCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c---ccccccccccccccc
Confidence 4444555443 457789999999999999999987 889999999999999999863 2 246789999998 77
Q ss_pred CCccEEEEc-chhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 695 NKYDRIISC-EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 695 ~~fD~i~s~-~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++||+|+|. .++||+++ +..+|+++.++|||||.+++....
T Consensus 101 ~~fD~ii~~~~~~~~~~d--~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 101 GAFEAVLALGDVLSYVEN--KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp TCEEEEEECSSHHHHCSC--HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccceeeecchhhhhhh--HHHHHHHHHhhcCcCcEEEEEECC
Confidence 999999986 58999977 789999999999999999997653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=1e-16 Score=165.15 Aligned_cols=114 Identities=21% Similarity=0.316 Sum_probs=99.7
Q ss_pred HHHHHHc-CCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 619 SLLIEKA-RVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 619 ~~l~~~l-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
..+++.+ .+.++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|++++...++ +++++++|+.+++..+
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~~ 93 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELND 93 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCSS
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccccC
Confidence 4455443 4567789999999999999999986 357999999999999999999988765 6999999999988557
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+||+|+|+.+++|+++ +..++++++++|||||.+++.+.
T Consensus 94 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 94 KYDIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CceEEEEehhhhcCCC--HHHHHHHHHHHcCcCcEEEEEEC
Confidence 8999999999999987 88999999999999999998764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=5.3e-16 Score=150.38 Aligned_cols=128 Identities=25% Similarity=0.421 Sum_probs=106.1
Q ss_pred ccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 035870 600 CAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD 679 (842)
Q Consensus 600 ~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~ 679 (842)
.++|.....+... +.+++.+...++++|||||||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++..
T Consensus 29 ~gvF~~~~~d~~t------~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~ 101 (194)
T d1dusa_ 29 SGVFSYGKVDKGT------KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDN 101 (194)
T ss_dssp TTSTTTTSCCHHH------HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred CCccCCCCcCHHH------HHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCcc
Confidence 4555544444332 35778888999999999999999999999886 7899999999999999999999998864
Q ss_pred -CeEEEEccccCCccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 680 -LIRLYLCDYRQLAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 680 -~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++++..+|..+..++++||+|+++.++++. .+....+++++.++|||||.+++..
T Consensus 102 ~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 102 YDIRVVHSDLYENVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEECSTTTTCTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEcchhhhhccCCceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 689999998775567899999999987654 4446889999999999999988743
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.8e-16 Score=155.26 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA- 692 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~- 692 (842)
..+..+++.+.+++|++|||||||+|.++..+|+. ...+|+++|+++++++.|+++++..++. ++.++++|..+..
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccc
Confidence 34567889999999999999999999999999987 3569999999999999999999998886 8999999987765
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCC---cccccccCccchhhhcccCCCCCCC
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPD---ERYNEYRLSSDFIKEYIFPGGCLPS 765 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~p~~~~~~ 765 (842)
.+++||+|++..+++++++ ++.+.|||||++++....... ..+........+.+++.++....|.
T Consensus 141 ~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fvpl 208 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITA 208 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBC
T ss_pred cccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEECccCCcEEEEEEEEEeCCeEEEEEEeeEEEEEC
Confidence 5678999999999999875 356779999999884322111 1111112234445556665555553
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=3.6e-16 Score=154.37 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=112.7
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccE
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDR 699 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~ 699 (842)
+.++++||++|||+|||+|..+.++|+. ++.+|+|+|+|+.|++.+++++...+ ++..+..|..... .+..+|+
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGGTTTCCCE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCccccccccee
Confidence 4567899999999999999999999998 56799999999999999999876543 7888999987765 4567888
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcccCCCCCCCHHHHHHHHhhcCCc
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRITSAMSVASRL 779 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf 779 (842)
+++...++|..+ ...+++++++.|||||.+++........... .. . ....+..+.+++ +||
T Consensus 145 ~~i~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~------~~-~---------~~~~e~~~~L~~-aGF 205 (230)
T d1g8sa_ 145 DVIYEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTK------DP-K---------EIFKEQKEILEA-GGF 205 (230)
T ss_dssp EEEEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS------CH-H---------HHHHHHHHHHHH-HTE
T ss_pred EEeeccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCCCC------CH-H---------HHHHHHHHHHHH-cCC
Confidence 888878887755 7899999999999999999876443221100 00 0 023456666776 799
Q ss_pred EEEEEEecCc
Q 035870 780 CVEQVENIGI 789 (842)
Q Consensus 780 ~v~~~~~~~~ 789 (842)
++.+..++.+
T Consensus 206 ~ive~idL~p 215 (230)
T d1g8sa_ 206 KIVDEVDIEP 215 (230)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEecCCC
Confidence 9998888754
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=7.2e-16 Score=160.30 Aligned_cols=233 Identities=14% Similarity=0.143 Sum_probs=143.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeee-ecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDL-DLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~-d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
||+|||||+|||+||++|+++|++|+|+|+++++||+++|....|..+ +.|+|.|+. ..+.+.+++.++..-.....
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~~~~~~~~~- 80 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT-NDKYIWDYVNDLVEFNRFTN- 80 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE-SCHHHHHHHHTTSCBCCCCC-
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCEEEeecCcEEEEe-cchHHHHHhhccccceeecc-
Confidence 899999999999999999999999999999999999999999999765 789999964 67788898887643221111
Q ss_pred eeeEeccCCCceeeCCCCCCcchhhhhhccCChHHHHHHHHHHhhhHHHHHHHHhhcCCCCCCccccHHHHHHhcCCCHH
Q 035870 81 SFSVSLEKGHGCEWGSRNGLSSLFAQKKNVLNPYFWQMLREIIKFKDDVLGYLEELESNPDIDRSETLGQFVNSRGYSEL 160 (842)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 160 (842)
... ...+++.+.++. .+..+. ......... .....+.............++.+++.+. +++.
T Consensus 81 ~~~-~~~~~~~~~~P~--~~~~i~----~l~~~~~~~----------~~~~~i~~~~~~~~~~~~~n~ee~~~~~-~G~~ 142 (298)
T d1i8ta1 81 SPL-AIYKDKLFNLPF--NMNTFH----QMWGVKDPQ----------EAQNIINAQKKKYGDKVPENLEEQAISL-VGED 142 (298)
T ss_dssp CCE-EEETTEEEESSB--SHHHHH----HHHCCCCHH----------HHHHHHHHHTTTTCCCCCCSHHHHHHHH-HHHH
T ss_pred ccc-eeeeceeEEecc--cHHHHH----HhhhhhcHH----------HHHHHHHHHHhhcccccchhHHHHHHHh-hchh
Confidence 111 112344443321 111100 000000000 1111111112222222567888888776 7888
Q ss_pred HHHHHHHHhhhcccCCCchhhccCCHHHHHHHHhhccccccCCCCceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeE
Q 035870 161 FQKAYLIPICGSIWSCPSEGVTSFSAFSVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCS 240 (842)
Q Consensus 161 ~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~ 240 (842)
+.+.++.|+....|+.++++++......+. +....-...+.......|++|+..+++.+.+ +.+|++++.-..
T Consensus 143 lye~ff~~Yt~K~Wg~~p~eL~~~~~~rip--ir~~~~~~yf~d~~q~~pk~Gyt~~~~~~l~-----~~~i~l~~~~~~ 215 (298)
T d1i8ta1 143 LYQALIKGYTEKQWGRSAKELPAFIIKRIP--VRFTFDNNYFSDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLK 215 (298)
T ss_dssp HHHHHTHHHHHHHHSSCGGGSCTTSSCCCC--BCSSSCCCSCCCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGG
T ss_pred HHHhcccchhhhccccCccccccccccccc--ccccccchhhhcceEEEEecccchHHHHHhc-----CCceEecccccc
Confidence 899999999999999999988432111100 0000000123333446788999999998886 457777653111
Q ss_pred EEeCCCcEEEEeCCCcEEeCCEEEEccChHHH
Q 035870 241 VLPADKGCTIVCGDGSREFYNSCVMALHAPDA 272 (842)
Q Consensus 241 I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~ 272 (842)
.. +.....+|+||.|.|....
T Consensus 216 -----~~------~~~~~~~~~vi~tg~iD~~ 236 (298)
T d1i8ta1 216 -----DK------DSLASKAHRIIYTGPIDQY 236 (298)
T ss_dssp -----SH------HHHHTTEEEEEECSCHHHH
T ss_pred -----hh------hhhhccCCeEEEcCcHHHh
Confidence 00 1112457889999887754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.62 E-value=8.6e-16 Score=152.54 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=93.3
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
..++.+++++||++|||+|||+|.++..+|+. ++.+|+++|.++++++.|++++++.+..+++++.++|+.+..+++.
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 46788999999999999999999999999987 5679999999999999999999988777799999999988776789
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
||.|++ ++++ +..++.++.++|||||++++..
T Consensus 155 fD~V~l-----d~p~--p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 155 YDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp EEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEE
T ss_pred eeeeee-----cCCc--hHHHHHHHHHhcCCCceEEEEe
Confidence 999997 3444 5688999999999999999843
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.7e-16 Score=168.59 Aligned_cols=90 Identities=27% Similarity=0.377 Sum_probs=78.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMSDM 80 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~~~ 80 (842)
+||||||||+|||+||++|+++|++|+||||++++|||++|.+.+|+.+|.|+++++...++.+.++++++|++....+.
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~~~ 85 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQ 85 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEECCC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCcceecCC
Confidence 47999999999999999999999999999999999999999999999999999999765666788999999998776655
Q ss_pred eeeEeccCCC
Q 035870 81 SFSVSLEKGH 90 (842)
Q Consensus 81 ~~~~~~~~g~ 90 (842)
...+...+|+
T Consensus 86 ~~~~~~~~g~ 95 (449)
T d2dw4a2 86 KCPLYEANGQ 95 (449)
T ss_dssp CCCEECTTSC
T ss_pred CceEEecCCc
Confidence 4444444443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=4.6e-15 Score=149.43 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
....++..++++||++|||+|||+|.++..+|+. ++++|+++|+|+++++.|+++++..++.+++.+...|+......
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 4467899999999999999999999999999987 56899999999999999999999999988999999997665555
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..||.|+. ++++ +..+++++.++|||||++++..
T Consensus 171 ~~~D~V~~-----d~p~--p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 171 KDVDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp CSEEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEE
T ss_pred cceeeeEe-----cCCC--HHHHHHHHHhhcCCCCEEEEEe
Confidence 78998874 5665 7889999999999999999854
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=4.1e-15 Score=148.43 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEccccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA--GLQDLIRLYLCDYRQL 691 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~--~l~~~v~~~~~d~~~~ 691 (842)
.....++..++++||++|||+|||+|.++..+|+. +..+|+++|+++++++.|+++++.. +..+++++.++|+.+.
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 34567899999999999999999999999999998 5679999999999999999998864 4456999999999887
Q ss_pred c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 ~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+ ++++||.|+. ++++ +..++.++.++|||||++++...
T Consensus 163 ~~~~~~fDaV~l-----dlp~--P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLA--PWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCCTTCEEEEEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEES
T ss_pred cccCCCcceEEE-----ecCC--HHHHHHHHHhccCCCCEEEEEeC
Confidence 6 6789999986 5666 67899999999999999998543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.57 E-value=5.5e-15 Score=143.72 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=88.6
Q ss_pred HcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEE
Q 035870 624 KARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRII 701 (842)
Q Consensus 624 ~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~ 701 (842)
.++++||++|||+|||+|..+.++++. +..+|+|+|+|+.|++.|+++++..+ ++.+++.|..+.+ ....+|.+.
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEE
Confidence 478899999999999999999999987 55799999999999999999998764 8999999988876 333444333
Q ss_pred Ec-chhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 702 SC-EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 702 s~-~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+ ..+.|..+ ...++++++++|||||++++....
T Consensus 128 ~v~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 128 LIYQDIAQKNQ--IEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EEEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEEecccChhh--HHHHHHHHHHHhccCCeEEEEEEc
Confidence 22 23445543 788999999999999999987643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1e-15 Score=152.45 Aligned_cols=110 Identities=18% Similarity=0.114 Sum_probs=90.3
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~ 696 (842)
.+.+.+ ..+|.+|||||||+|..+..+++..+.+|+|||+|+.+++.|+++.+..+. ++.++..|+.+.. ++++
T Consensus 45 ~la~~~-~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 121 (229)
T d1zx0a1 45 ALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGH 121 (229)
T ss_dssp HHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTC
T ss_pred HHHHhh-ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--cccccccccccccccccccc
Confidence 344444 367899999999999999999987557999999999999999999877653 6788888866543 5678
Q ss_pred ccEEE-----EcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRII-----SCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~-----s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||.|+ +...++|+.+ ...++++++|+|||||++++.
T Consensus 122 fD~i~fD~~~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 122 FDGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EEEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEEC
T ss_pred ccceeecccccccccccccC--HHHHHHHHHHHcCCCcEEEEE
Confidence 99987 4667777755 889999999999999999874
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.8e-14 Score=148.42 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=111.3
Q ss_pred HHHHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh-----c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE--EE
Q 035870 615 MRKVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR-----T--GCKYTGITLSEEQLKYAEMKVKEAGLQDLIR--LY 684 (842)
Q Consensus 615 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-----~--~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~--~~ 684 (842)
.+++..++.++. .++..+|||||||+|.++..+++. + +.+++|+|+|+.|++.|+++++......++. +.
T Consensus 25 ~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 104 (280)
T d1jqea_ 25 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWH 104 (280)
T ss_dssp HHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEE
T ss_pred HHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccch
Confidence 334444554443 355568999999999998887664 1 3478999999999999999987644333444 34
Q ss_pred EccccCC------c-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccCccchhhhcc
Q 035870 685 LCDYRQL------A-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYI 757 (842)
Q Consensus 685 ~~d~~~~------~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~i 757 (842)
..++.+. + ++++||+|++..+++|+++ +..++++++++|||||.+++............+ ..+...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~---~~~~~~~~ 179 (280)
T d1jqea_ 105 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLW---KKYGSRFP 179 (280)
T ss_dssp CSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHH---HHHGGGSC
T ss_pred hhhhhhhcchhcccCCCCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHH---HHHHHhcC
Confidence 4444321 2 4689999999999999977 899999999999999999997765443221111 11112221
Q ss_pred cC-CCCCCCHHHHHHHHhhcCCcEEEEE
Q 035870 758 FP-GGCLPSLSRITSAMSVASRLCVEQV 784 (842)
Q Consensus 758 ~p-~~~~~~~~~~~~~~~~~~gf~v~~~ 784 (842)
.+ .....+..++.+.+.+ .||.....
T Consensus 180 ~~~~~~~~~~~~~~~~L~~-~G~~~~~~ 206 (280)
T d1jqea_ 180 QDDLCQYITSDDLTQMLDN-LGLKYECY 206 (280)
T ss_dssp CCTTSCCCCHHHHHHHHHH-HTCCEEEE
T ss_pred CCcccccCCHHHHHHHHHH-CCCceEEE
Confidence 11 1234567788777776 79976543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.1e-14 Score=150.83 Aligned_cols=116 Identities=21% Similarity=0.276 Sum_probs=93.2
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC---CeEEEEccccCC----c
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD---LIRLYLCDYRQL----A 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~---~v~~~~~d~~~~----~ 692 (842)
.+++.+..+++.+|||||||+|.++..++++ |.+|+|+|+|++|++.|+++....+... +..+...|+..+ +
T Consensus 47 ~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T d1xvaa_ 47 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 125 (292)
T ss_dssp HHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred HHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence 3455555567889999999999999999998 8999999999999999999988766431 234556665433 3
Q ss_pred cCCCccEEEEcc-hhhhcCh-----hhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCE-MIEAVGH-----EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~-~~~~~~~-----~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
..++||.|+|.. +++|+++ ++...+|++++++|||||++++...
T Consensus 126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 457899999864 8999864 3578899999999999999999654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.5e-14 Score=147.34 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=88.2
Q ss_pred HHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 619 SLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
..+.+.+ ..++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|+++. .++++.++|+.+++ ++++
T Consensus 75 ~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~s 147 (268)
T d1p91a_ 75 AQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTS 147 (268)
T ss_dssp HHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTC
T ss_pred HHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCC
Confidence 3444443 456779999999999999999988 6789999999999999998763 37999999999999 7899
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
||+|+++.+++| +++++|+|||||++++.+...
T Consensus 148 fD~v~~~~~~~~---------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 148 MDAIIRIYAPCK---------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEEEESCCCC---------HHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEeecCCHHH---------HHHHHHHhCCCcEEEEEeeCC
Confidence 999999888776 357899999999999987654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8.7e-14 Score=141.32 Aligned_cols=151 Identities=17% Similarity=0.043 Sum_probs=108.1
Q ss_pred CCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC--------------------------
Q 035870 626 RVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-------------------------- 679 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-------------------------- 679 (842)
....|.+|||||||+|.++...+.....+|+|+|+|+.|++.+++++...+..-
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345788999999999988766565546699999999999999998875433110
Q ss_pred ---CeEEEEccccCCc-------cCCCccEEEEcchhhhcCh--hhHHHHHHHHHhccccCcEEEEEeecCCCccccccc
Q 035870 680 ---LIRLYLCDYRQLA-------KANKYDRIISCEMIEAVGH--EFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYR 747 (842)
Q Consensus 680 ---~v~~~~~d~~~~~-------~~~~fD~i~s~~~~~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 747 (842)
...+..+|+.+.. ..++||+|++..+++|+.. +.+..+++++.++|||||.+++.+....... ..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~-~~-- 207 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY-LA-- 207 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-EE--
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc-cc--
Confidence 0134455654321 3468999999999999963 3588999999999999999999776533211 10
Q ss_pred CccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEec
Q 035870 748 LSSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENI 787 (842)
Q Consensus 748 ~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~ 787 (842)
...-|+ ....+.+++.+.+.+ +||++++.+..
T Consensus 208 ------~~~~~~-~~~~t~e~v~~~l~~-aGf~v~~~~~~ 239 (263)
T d2g72a1 208 ------GEARLT-VVPVSEEEVREALVR-SGYKVRDLRTY 239 (263)
T ss_dssp ------TTEEEE-CCCCCHHHHHHHHHH-TTEEEEEEEEE
T ss_pred ------CCcccc-cCCCCHHHHHHHHHH-CCCeEEEEEEe
Confidence 111111 123588999998887 89999887654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.8e-14 Score=139.28 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=94.8
Q ss_pred HHHHHHHHc--CCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCC----CCeEEEEccc
Q 035870 617 KVSLLIEKA--RVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQ----DLIRLYLCDY 688 (842)
Q Consensus 617 ~~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~----~~v~~~~~d~ 688 (842)
....+++.| .++||++|||||||+|..+..+|+. +..+|+++|+++++++.|++++++.++. +++.++.+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 345778877 6799999999999999999999987 4579999999999999999999876652 4789999998
Q ss_pred cCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 689 RQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 689 ~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.+.. ++++||+|++...++++++ .+.+.|||||++++-.
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 7766 6689999999999999875 3678899999999844
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.50 E-value=6e-14 Score=144.79 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPDA 272 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~~ 272 (842)
...++..|.+.++++|++++++++|++|+.++++|.|+|++| ++.||+||+|+.++.-
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~ 206 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS 206 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred ccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcch
Confidence 357899999999999999999999999999999999999988 6999999999987743
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=5.1e-14 Score=135.81 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=92.3
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcch
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEM 705 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~ 705 (842)
+-.|||||||+|.++..+|+. ++..++|+|+++.++..|.+++++.++. ||.++++|+.++. +++++|.|++++.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhccccccc
Confidence 347999999999999999998 8899999999999999999999999996 8999999998765 6789999999887
Q ss_pred hhhcChhh------HHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHEF------MEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~~------~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..+....+ .+.+++.++++|||||.+++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 76654422 2589999999999999999853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=9.5e-14 Score=143.17 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc----------CCCCCeEEE
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEA----------GLQDLIRLY 684 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~----------~l~~~v~~~ 684 (842)
....|+..++++||++|||+|||+|.++..+|+. ++.+|+++|+++++++.|++++++. +..+++++.
T Consensus 86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 4567889999999999999999999999999987 5679999999999999999999864 345789999
Q ss_pred EccccCCc---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 685 LCDYRQLA---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 685 ~~d~~~~~---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.|+.+.. ++..||.|+. .+++ +..++.++.++|||||++++.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~--P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLN--PHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred ecchhhcccccCCCCcceEee-----cCcC--HHHHHHHHHHhccCCCEEEEE
Confidence 99988764 4578999986 3444 457899999999999999983
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.48 E-value=7.2e-14 Score=136.23 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-ccCCC
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-AKANK 696 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~ 696 (842)
...|++.+.++++++|||||||+|.++..+|+. +.+|+++|+++++++.|+++.... .++.++.+|.... +..++
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhh
Confidence 346889999999999999999999999999987 789999999999999999987643 4899999997664 45688
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
||+|++...++++++ .+.+.|||||++++-
T Consensus 135 fD~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 999999999998865 345779999999984
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=5.6e-14 Score=147.71 Aligned_cols=111 Identities=27% Similarity=0.328 Sum_probs=95.5
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEE
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRI 700 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i 700 (842)
.+.....++++|||||||+|.++..+|+....+|+++|.|+ +++.|+++.+.+++.++++++++|+.+++ ++++||+|
T Consensus 31 ~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i 109 (328)
T d1g6q1_ 31 IQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDII 109 (328)
T ss_dssp HHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEE
T ss_pred HhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEE
Confidence 33334457899999999999999999988446999999996 77899999999999999999999999998 67899999
Q ss_pred EEcchhhhcChh-hHHHHHHHHHhccccCcEEEE
Q 035870 701 ISCEMIEAVGHE-FMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 701 ~s~~~~~~~~~~-~~~~~~~~~~~~LkpgG~~~~ 733 (842)
++..+.+++..+ .+..++..+.++|||||+++-
T Consensus 110 ~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 110 ISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 998887777553 578889999999999999863
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=1.9e-13 Score=133.81 Aligned_cols=108 Identities=22% Similarity=0.165 Sum_probs=88.4
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~ 696 (842)
+.+.++||++|||+|||+|..+.++|+. ++.+|+|+|+|+.+++.++++++..+ ++..+..|..... ....
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCC
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccc
Confidence 4567899999999999999999999998 45799999999999999999886654 6788888876543 3367
Q ss_pred ccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 697 YDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+|.|++. +.|.+ +...+++++++.|||||++++....
T Consensus 144 vD~i~~d--~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 144 VDVIFED--VAQPT--QAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eEEEEEE--ccccc--hHHHHHHHHHHhcccCCeEEEEEEC
Confidence 8888764 33443 3788999999999999999986543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=7.2e-14 Score=145.94 Aligned_cols=107 Identities=27% Similarity=0.298 Sum_probs=92.9
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcch
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEM 705 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~ 705 (842)
+.+|++|||||||+|.++..+|+....+|+++|.|+. ...+++.++.+++.++|+++++|+.+++ +.++||+|++..+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 109 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence 4578999999999999999999973368999999975 5778888899999999999999999998 6689999999887
Q ss_pred hhhcChh-hHHHHHHHHHhccccCcEEEEE
Q 035870 706 IEAVGHE-FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 706 ~~~~~~~-~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.+++..+ .++.++..+.++|||||+++-+
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 7776544 5889999999999999998743
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.44 E-value=2.2e-13 Score=131.80 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
.+..+++.++++++++|||||||+|..+..+|+..+.+|+++|.++++++.|++++++.++. ++.++++|..+.. ..+
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGC
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCcccC
Confidence 44678899999999999999999999999999876778999999999999999999999986 8999999987754 678
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+||+|++...++++++. +.+.|||||++++-.
T Consensus 145 pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEEE
T ss_pred cceeEEeecccccCCHH--------HHHhcCCCCEEEEEE
Confidence 99999999999998752 456699999998743
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.43 E-value=4.1e-13 Score=129.34 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=90.6
Q ss_pred CCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc---cCCCccEEEEcch
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---KANKYDRIISCEM 705 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---~~~~fD~i~s~~~ 705 (842)
.-.|||||||+|.++..+|+. ++..++|+|+++.++..|.+++.+.+++ |+.++.+|+.++. +++++|.|+++..
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhccccc
Confidence 347999999999999999998 7899999999999999999999999997 8999999988875 6789999998776
Q ss_pred hhhcChhh------HHHHHHHHHhccccCcEEEEEe
Q 035870 706 IEAVGHEF------MEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 706 ~~~~~~~~------~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
-.+....+ .+.+++.++++|||||.+.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 54443221 2689999999999999998854
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.7e-13 Score=141.41 Aligned_cols=113 Identities=25% Similarity=0.271 Sum_probs=95.0
Q ss_pred HHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccE
Q 035870 621 LIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDR 699 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~ 699 (842)
+.+.....++++|||||||+|.++..+|+....+|+++|.|+.+. .++++..++++.++++++++|..+++ +..+||+
T Consensus 27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred HHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceE
Confidence 444445668999999999999999999998335899999999875 57777788888889999999999998 6689999
Q ss_pred EEEcchhhhcChh-hHHHHHHHHHhccccCcEEEEE
Q 035870 700 IISCEMIEAVGHE-FMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 700 i~s~~~~~~~~~~-~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
|+|..+.+++..+ .++.++....++|||||+++-+
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 9998888777655 4678888889999999999853
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.41 E-value=1.2e-12 Score=132.41 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChH
Q 035870 212 WRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 212 gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
.....+.+.|.+.+++.|++|+++++|++|..+++++ .|++++|++++||+||+|+...
T Consensus 107 ~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~ 166 (251)
T d2i0za1 107 NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGK 166 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCS
T ss_pred ccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCc
Confidence 3456788999999999999999999999999988876 5888999999999999998754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.41 E-value=1.4e-13 Score=141.45 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...++..|++.++++|++|+.+++|++|+.+++.+.|+|++| ++.||.||+|+.++.
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s 206 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS 206 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH
Confidence 467899999999999999999999999999998999999988 799999999998763
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=5.8e-13 Score=133.51 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=91.5
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchh
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMI 706 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~ 706 (842)
+++|++|||+|||+|.+++.+|++..++|+++|+|+.+++.++++++.+++.++++++++|++++...+.||.|+++..-
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 184 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence 46899999999999999999998855799999999999999999999999999999999999999877899999986432
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
. ...++..+.++|||||.+.++.+.
T Consensus 185 ~------~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 185 R------THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred c------hHHHHHHHHhhcCCCCEEEEEecc
Confidence 1 245667788899999999887654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.38 E-value=2.7e-12 Score=133.85 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcE-EEEeCCCcEEeCCEEEEccChHH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGC-TIVCGDGSREFYNSCVMALHAPD 271 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~A~p~~~ 271 (842)
...++..|.+.+++.|++|+.+++|++|..+++++ .|.|++| +++||+||+|+.++.
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s 204 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG 204 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH
Confidence 45788999999999999999999999999999986 5888888 799999999998773
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.34 E-value=3.4e-12 Score=129.01 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=51.5
Q ss_pred ceEEecCChhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCc--E-EEEeCCCcEEeCCEEEEccChH
Q 035870 206 QWLTVRWRSHSYVNKVRKQLESWGCQIRTSSEVCSVLPADKG--C-TIVCGDGSREFYNSCVMALHAP 270 (842)
Q Consensus 206 ~~~~~~gG~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~--v-~V~~~~G~~~~ad~VV~A~p~~ 270 (842)
..+.+......+.+.|.+.+++.|++|+++++|++|....++ + .+...++++++||+||+|+...
T Consensus 100 ~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~ 167 (253)
T d2gqfa1 100 GQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGL 167 (253)
T ss_dssp TEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCS
T ss_pred CccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcc
Confidence 344456667789999999999999999999999999987664 2 2344566789999999998754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=2.5e-12 Score=135.73 Aligned_cols=117 Identities=10% Similarity=0.138 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcC-------C-CCCeEE-EE
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAG-------L-QDLIRL-YL 685 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~-------l-~~~v~~-~~ 685 (842)
..+..+++.+++++++++||||||+|..+..+|+..++ +|+|||+|+.|++.|++++++.+ . ...+.+ ..
T Consensus 203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 45678999999999999999999999999999988665 89999999999999999887632 1 112333 34
Q ss_pred ccccCCc----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 686 CDYRQLA----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 686 ~d~~~~~----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+|+.+.+ .-..+|+|+++. +.|.+ .+...++++.+.|||||++++..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~--~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNN-FLFDE--DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECC-TTCCH--HHHHHHHHHHTTCCTTCEEEESS
T ss_pred echhhccccccccccceEEEEec-ccCch--HHHHHHHHHHHhcCCCcEEEEec
Confidence 4554443 124578888764 44543 38999999999999999998754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=3e-12 Score=128.40 Aligned_cols=113 Identities=14% Similarity=0.289 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCcc
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYD 698 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD 698 (842)
..+.... +.+.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+++++..++. +|+++++|..+..++.+||
T Consensus 100 ~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~~~~~~fD 177 (274)
T d2b3ta1 100 QALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQFA 177 (274)
T ss_dssp HHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCCEE
T ss_pred hHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeecccccccCCCcee
Confidence 3444433 45678999999999999999987 7899999999999999999999999985 7999999987654567999
Q ss_pred EEEEcchhh-------------hc----------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 699 RIISCEMIE-------------AV----------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 699 ~i~s~~~~~-------------~~----------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+|+||...- |- |-+.+..+++++.++|+|||.+++.
T Consensus 178 lIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 178 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 999985421 11 1134677899999999999999984
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.33 E-value=5.4e-12 Score=125.15 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=120.0
Q ss_pred HHHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc
Q 035870 616 RKVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 693 (842)
.....+++... .....+|||||||+|.++..++++ |+.+++..|+. +.+ +..+..++++++.+|+.+..+
T Consensus 67 ~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~~~~~p 138 (244)
T d1fp1d2 67 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDMFASVP 138 (244)
T ss_dssp HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCCTTEEEEECCTTTCCC
T ss_pred HHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhh-------hccCCCCCeEEecCCcccccc
Confidence 34456777776 466789999999999999999988 88999999984 333 334456799999999865443
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC-c-cc-hhhhcccCCCCCCCHHHHH
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL-S-SD-FIKEYIFPGGCLPSLSRIT 770 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~i~p~~~~~~~~~~~ 770 (842)
..|++++..++|+.+++....+++++++.|+|||+++|.+...++........ . .. .+.-....+|...|..++.
T Consensus 139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~ 216 (244)
T d1fp1d2 139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYE 216 (244)
T ss_dssp --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHH
T ss_pred --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHH
Confidence 56999999999999999999999999999999999999998766543211100 0 00 0111122456677899998
Q ss_pred HHHhhcCCcEEEEEEe
Q 035870 771 SAMSVASRLCVEQVEN 786 (842)
Q Consensus 771 ~~~~~~~gf~v~~~~~ 786 (842)
+.+.+ +||+..++..
T Consensus 217 ~ll~~-AGF~~v~v~~ 231 (244)
T d1fp1d2 217 KLSKL-SGFSKFQVAC 231 (244)
T ss_dssp HHHHH-TTCSEEEEEE
T ss_pred HHHHH-cCCCceEEEe
Confidence 88887 8999877643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.29 E-value=2.1e-12 Score=126.05 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=89.9
Q ss_pred HHHHHHHc--CCCCCCeEEEeccCchHHHHHHHHhc-------CCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEE
Q 035870 618 VSLLIEKA--RVSKGQEVLEIGCGWGTLAIEIVKRT-------GCKYTGITLSEEQLKYAEMKVKEAGL----QDLIRLY 684 (842)
Q Consensus 618 ~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~la~~~-------~~~v~gid~s~~~~~~a~~~~~~~~l----~~~v~~~ 684 (842)
...+++.| .++++++|||||||+|..+..+++.. +.+|+++|+++++++.|++++...++ -.++.+.
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 45678877 78999999999999999998888762 24899999999999999998654322 1389999
Q ss_pred EccccCCc-cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 685 LCDYRQLA-KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 685 ~~d~~~~~-~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
++|..+.. +.++||+|++...++++++ .+.+.|||||++++-
T Consensus 147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 147 EGDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ecccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 99987654 6689999999999998875 356789999999884
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=5.8e-12 Score=131.08 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=93.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRII 701 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~ 701 (842)
+++|++|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+|+.++++++++|+.+.. ...+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 478999999999999999999987445899999999999999999999999889999999976542 457999999
Q ss_pred EcchhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 702 SCEMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 702 s~~~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
+...-..-.. ..+..++..+.++|||||++++.+++..
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9765322221 2356788899999999999999876643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.23 E-value=1.2e-11 Score=113.54 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=90.4
Q ss_pred HHHHcCC-CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCc
Q 035870 621 LIEKARV-SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 621 l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~f 697 (842)
+...+.. -.|.+|||+|||+|.+++.++.+...+|+++|.++++++.++++++..++.++++++++|+.+.. ..++|
T Consensus 5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~f 84 (152)
T d2esra1 5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRF 84 (152)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCE
T ss_pred HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccccccc
Confidence 3344443 36889999999999999999888335999999999999999999999999889999999987753 56899
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHH--hccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~ 735 (842)
|+|++...+.. ......+..+. ++|+|+|.++++.
T Consensus 85 DiIf~DPPy~~---~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 85 DLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp EEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ceeEechhhcc---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 99999876442 22455566554 5799999999864
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.21 E-value=2.5e-11 Score=120.38 Aligned_cols=149 Identities=9% Similarity=0.062 Sum_probs=113.5
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
...+|||||||+|.++..++++ ++.+++..|+. +.++ ..+..++|+++.+|+.+.. ..+|+++...++|
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~-------~~~~~~rv~~~~gD~f~~~--p~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVE-------NLSGSNNLTYVGGDMFTSI--PNADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT-------TCCCBTTEEEEECCTTTCC--CCCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHH-------hCcccCceEEEecCcccCC--CCCcEEEEEeecc
Confidence 4468999999999999999998 78999999984 4433 3455679999999987644 3689999999999
Q ss_pred hcChhhHHHHHHHHHhccccC---cEEEEEeecCCCcccccccCccchh--hhcccCCCCCCCHHHHHHHHhhcCCcEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAED---GLLVLQFISIPDERYNEYRLSSDFI--KEYIFPGGCLPSLSRITSAMSVASRLCVE 782 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~Lkpg---G~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~p~~~~~~~~~~~~~~~~~~gf~v~ 782 (842)
+.+++....+|+++++.|+|| |++++.+...++............+ -.....+|...|.+++.+.+++ +||++.
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~-AGf~~~ 228 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIE-AGFQHY 228 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHH-TTCCEE
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH-cCCceE
Confidence 999999999999999999998 7888887766554322111101111 0112246777899999888887 899998
Q ss_pred EEEecC
Q 035870 783 QVENIG 788 (842)
Q Consensus 783 ~~~~~~ 788 (842)
++...+
T Consensus 229 ~i~~~~ 234 (244)
T d1fp2a2 229 KISPLT 234 (244)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 887654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=1.6e-11 Score=127.08 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=90.6
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
.+|++|||++||+|++++++|+. +.+|+++|+|+.+++.|+++++.+|+. +++++++|..+.. ..++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 46899999999999999999875 789999999999999999999999996 7999999987642 4579999999
Q ss_pred cchhhhcCh-------hhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 703 CEMIEAVGH-------EFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 703 ~~~~~~~~~-------~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
...-...+. ..+..++..+.++|||||.+++.+++.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 754222111 235678899999999999999977653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.18 E-value=1.9e-10 Score=116.58 Aligned_cols=62 Identities=34% Similarity=0.567 Sum_probs=48.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEM 77 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~ 77 (842)
++|+|||||++||+||..|+++|++|+||||++.++... |... ...++..++++++|+....
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~------------~~g~---~~~~~~~~~l~~~g~~~~~ 66 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF------------GTGI---VVQPELVHYLLEQGVELDS 66 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCC------------SCEE---ECCHHHHHHHHHTTCCGGG
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC------------ceEE---EECccHHHHHHHcCcchhh
Confidence 589999999999999999999999999999987654321 1111 1356778899999987654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=2.6e-11 Score=113.50 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=80.6
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC--Cc-cCCCccEEEEc
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ--LA-KANKYDRIISC 703 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~-~~~~fD~i~s~ 703 (842)
+..|.+|||+|||+|.+++.++.+ |++|+++|.|+++++.++++++.+++.+++....+|... .. ..++||+|++.
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 467889999999999999998887 889999999999999999999999997666555555321 11 45789999998
Q ss_pred chhhhcChhhHHHHHHHH--HhccccCcEEEEEe
Q 035870 704 EMIEAVGHEFMEEFFGCC--ESLLAEDGLLVLQF 735 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~--~~~LkpgG~~~~~~ 735 (842)
..+.. + ....+.++ ..+|+|||.++++.
T Consensus 118 PPY~~-~---~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYAM-D---LAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTTS-C---TTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccccc-C---HHHHHHHHHHcCCcCCCeEEEEEe
Confidence 77543 2 12233333 36899999999864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.16 E-value=1.2e-10 Score=117.95 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=89.0
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccccCCc-----cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-LIRLYLCDYRQLA-----KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~~-----~~~~fD~i 700 (842)
..++.+|||++||+|.++++++.. |++||+||.|+.+++.|+++++.+++.+ +++++++|+.+.. ...+||+|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 357889999999999999999986 8899999999999999999999999875 6999999986653 35789999
Q ss_pred EEcchhhhc--------ChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEAV--------GHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~~--------~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
|+...-... -.+++..+++.+.++|+|||.+++.+..
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 986442111 1234677788899999999987665543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=8.8e-11 Score=116.80 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=118.0
Q ss_pred HHHHHHHcCC-CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 618 VSLLIEKARV-SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 618 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
...++..... ....+|||||||.|.+++.++++ |+.++++.|+.+. ++ .....++++++.+|+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~~P-- 138 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVSIP-- 138 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTCCC--
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEecccccccCC--
Confidence 3456666654 44578999999999999999999 8899999999653 22 33445689999999865433
Q ss_pred CccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCCCcccccccC----ccchhhhcccCCCCCCCHHHHHH
Q 035870 696 KYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIPDERYNEYRL----SSDFIKEYIFPGGCLPSLSRITS 771 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~p~~~~~~~~~~~~ 771 (842)
..|.++...+++..++++...+++++++.|+|||++++.+...++........ ..++..--+.++|.-.+.+++.+
T Consensus 139 ~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ 218 (243)
T d1kyza2 139 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFED 218 (243)
T ss_dssp CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHH
T ss_pred CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHH
Confidence 35778888999999999999999999999999999999887755432211100 11122222346777788999988
Q ss_pred HHhhcCCcEEEEEEecC
Q 035870 772 AMSVASRLCVEQVENIG 788 (842)
Q Consensus 772 ~~~~~~gf~v~~~~~~~ 788 (842)
.+++ +||+.+++....
T Consensus 219 ll~~-AGf~~vkv~~~~ 234 (243)
T d1kyza2 219 LAKG-AGFQGFKVHCNA 234 (243)
T ss_dssp HHHH-HCCSCEEEEEEE
T ss_pred HHHH-cCCCcEEEEEeC
Confidence 8777 899988876543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.14 E-value=5.8e-11 Score=122.02 Aligned_cols=37 Identities=41% Similarity=0.602 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||++|.+|+++|++|+|||+++.+||.
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGt 45 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 45 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccc
Confidence 8999999999999999999999999999999999994
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.4e-10 Score=111.65 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=69.3
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCccEE
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKYDRI 700 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~fD~i 700 (842)
+..++||||||+|..+..++++ ++++++|+|+|+++++.|+++++.+++.+++.++..+..+.. .+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 4468999999999999999988 899999999999999999999999999999999987654321 34689999
Q ss_pred EEcchhhhc
Q 035870 701 ISCEMIEAV 709 (842)
Q Consensus 701 ~s~~~~~~~ 709 (842)
+||..+..-
T Consensus 141 vsNPPY~~~ 149 (250)
T d2h00a1 141 MCNPPFFAN 149 (250)
T ss_dssp EECCCCC--
T ss_pred EecCccccc
Confidence 999887643
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.12 E-value=1.8e-11 Score=129.19 Aligned_cols=47 Identities=34% Similarity=0.421 Sum_probs=39.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCCCCCCceeEeeCCe
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDYLGGHAKTVTFDGV 47 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~~GG~~~s~~~~g~ 47 (842)
|+|+|||||+|||+||..|++.| ++|+||||++.+||.-......|.
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~ 53 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSN 53 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCc
Confidence 68999999999999999998876 699999999999996544333333
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.12 E-value=1.9e-10 Score=119.60 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cE-EEE--eCCCc--EEeCCEEEEccChH
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GC-TIV--CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v-~V~--~~~G~--~~~ad~VV~A~p~~ 270 (842)
...+...+.+.+.+.|++|+++++|+++..+++ +| .|. ..++. ++.|+.||+|+...
T Consensus 144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~ 206 (308)
T d1y0pa2 144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF 206 (308)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcc
Confidence 346888888889889999999999999988765 34 343 33443 58899999999754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=1.4e-10 Score=115.75 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=85.0
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~ 706 (842)
+..++||+|||+|..+..+++.++++|+++|+|+++++.|+++++.+++.+++.+...|..+.. ..++||+||||...
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 4568999999999999999988889999999999999999999999999988999999987654 34799999999531
Q ss_pred ----hhc--------------ChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 707 ----EAV--------------GHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 707 ----~~~--------------~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.. +++.+.-+-+-+.++|+|||.+++..
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 011 11123333344678999999988843
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.1e-10 Score=110.60 Aligned_cols=119 Identities=28% Similarity=0.384 Sum_probs=97.1
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
++.+++.+.++++..+||++||+|+.+..+++. ++++|+|+|.+++|++.|+++++..+ +++.++++++.++.
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHH
Confidence 356788889999999999999999999999998 68899999999999999999987754 58999999988764
Q ss_pred --cCCCccEEEEcchh--hhc-----ChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 693 --KANKYDRIISCEMI--EAV-----GHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 693 --~~~~fD~i~s~~~~--~~~-----~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
..++||.|+....+ .++ +-......+..+.++|+|||++++.++..
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 34789999865322 111 11246788999999999999999866543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=3.6e-10 Score=108.49 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=71.3
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEE
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRII 701 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~ 701 (842)
....+.-.|.+|||+|||+|.+++.++.....+|+|+|+|+.+++.|+++++..+. +++++.+|..+++ ++||+|+
T Consensus 39 ~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~--~~fD~Vi 114 (201)
T d1wy7a1 39 AYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVI 114 (201)
T ss_dssp HHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEE
T ss_pred HHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC--CcCcEEE
Confidence 34444457889999999999999998887446999999999999999999988775 6899999998876 7899999
Q ss_pred Ecchhhhc
Q 035870 702 SCEMIEAV 709 (842)
Q Consensus 702 s~~~~~~~ 709 (842)
++..+...
T Consensus 115 ~nPP~~~~ 122 (201)
T d1wy7a1 115 MNPPFGSQ 122 (201)
T ss_dssp ECCCCSSS
T ss_pred EcCccccc
Confidence 99876543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.07 E-value=2e-10 Score=118.06 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=90.0
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----~~~~fD~i 700 (842)
+.+|.+|||+.||+|+++++++.....+|+++|+|+.+++.++++++.+++. ++++++++|+.+.. ..++||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 4579999999999999999988863348999999999999999999999985 57999999986542 34689999
Q ss_pred EEcchhhh-----cC--hhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEA-----VG--HEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~-----~~--~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++...-.. .. ...+..+++.+.++|+|||.+++.+.+
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 98644111 00 123678899999999999999997765
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.07 E-value=4.1e-10 Score=117.81 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-c---EEEEeCCCc--EEeCCEEEEccCh
Q 035870 214 SHSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-G---CTIVCGDGS--REFYNSCVMALHA 269 (842)
Q Consensus 214 ~~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~---v~V~~~~G~--~~~ad~VV~A~p~ 269 (842)
...+++.|.+.+.++|++|+++++|++|..+++ + |.+...+++ ++.|+.||+|+..
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG 212 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGG 212 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCC
Confidence 457889999999999999999999999988655 3 334444443 4899999999874
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.05 E-value=3e-10 Score=118.48 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cE---EEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GC---TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v---~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+++.|.+.+++.|++++++++|+++..+++ +| .+...+++ ++.|+.||+|+..+
T Consensus 148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~ 209 (317)
T d1qo8a2 148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY 209 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccc
Confidence 35889999999999999999999999977554 43 34445554 47899999999754
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=3.5e-10 Score=109.58 Aligned_cols=124 Identities=16% Similarity=0.223 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 035870 610 LKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD 687 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d 687 (842)
+...+-+.+..+++... ..+|||||||+|..++.+|+. .+.+|+++|+++++++.|+++++..|+.++|+++.+|
T Consensus 40 i~~~~G~lL~~lv~~~k---pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd 116 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREYS---PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 116 (214)
T ss_dssp CHHHHHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhhC---CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc
Confidence 34445556666666653 459999999999999999986 4689999999999999999999999999999999999
Q ss_pred ccCCc-------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 688 YRQLA-------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 688 ~~~~~-------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
..+.. ..++||+|+....-+.. .....+.+..++|||||.+++.++..+
T Consensus 117 ~~e~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~Ddvl~~ 172 (214)
T d2cl5a1 117 SQDLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLADNVIVP 172 (214)
T ss_dssp HHHHGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEESCCCCC
T ss_pred ccccccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEEeCcCCC
Confidence 76642 23689999975321111 123357778899999999888665544
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=1.7e-10 Score=109.23 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=62.8
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
-.|++|||+|||+|.+++.++.....+|+|+|+|+++++.|++++. +++++++|+.+++ ++||+|+++..+.
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~--~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPFG 118 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcC--CcceEEEeCcccc
Confidence 3689999999999999998888744689999999999999998852 6899999999987 7899999997763
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=7.2e-10 Score=107.30 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 614 q~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
|-+.+..+++.. ..++|||||||+|..+..+|+. .+.+|+++|.+++..+.|+++++..|+.++++++.+|+.+.
T Consensus 47 ~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 47 QAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc
Confidence 344555555554 4569999999999999999987 36899999999999999999999999999999999997553
Q ss_pred c-------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecCC
Q 035870 692 A-------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISIP 739 (842)
Q Consensus 692 ~-------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~~ 739 (842)
. ..++||.|+... ..+.+..+++.+.++|+|||.+++..+...
T Consensus 124 l~~~~~~~~~~~fD~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred chhhhhhcccCCccEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 2 247899999842 334578899999999999999999776544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2.7e-09 Score=92.44 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=41.4
Q ss_pred HHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccC
Q 035870 220 KVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 220 ~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p 268 (842)
.+.+.++++|+++++++.|++|..++++ +.|++++|+++.+|.||+|+.
T Consensus 67 ~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 67 TLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp HHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 3455666679999999999999987664 789999999999999999873
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.95 E-value=1.6e-09 Score=101.93 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHHcC-CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----c
Q 035870 620 LLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----K 693 (842)
Q Consensus 620 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~ 693 (842)
.+...+. ...|.+|||++||+|.+++.++.+...+|+.+|.|+++++.++++++..+..++++++++|+.+.- .
T Consensus 31 alFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~ 110 (182)
T d2fhpa1 31 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE 110 (182)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc
Confidence 4445554 347899999999999999999998445799999999999999999999998889999999976532 3
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHH--hccccCcEEEEEee
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCE--SLLAEDGLLVLQFI 736 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~--~~LkpgG~~~~~~~ 736 (842)
..+||+|++...+.. ......+..+. .+|+|+|.++++..
T Consensus 111 ~~~fDlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 111 KLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp TCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 468999999887543 23566777765 47999999998643
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=1.1e-07 Score=101.17 Aligned_cols=116 Identities=12% Similarity=0.169 Sum_probs=82.0
Q ss_pred ccccHHHHHHhcCCCHHHHHHHHHHhhhcccCCCchhhccCCHH-HHHHHHhhccccccCCCCceEEecCChhHHHHHHH
Q 035870 144 RSETLGQFVNSRGYSELFQKAYLIPICGSIWSCPSEGVTSFSAF-SVLSFCRNHHLLQLFGRPQWLTVRWRSHSYVNKVR 222 (842)
Q Consensus 144 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~ 222 (842)
+..++.+|+...++.+...+.+...+.. +..+ .....++. .+..|+.+ .+.++...+.++..|.+.|+++++
T Consensus 311 ~~~~~~e~l~~~~l~~~~~~~i~~aial--~~~~--~~~~~~~l~ri~~yl~S---lg~yG~spflyp~YG~gEipQ~Fc 383 (491)
T d1vg0a1 311 EGTTFSEYLKTQKLTPNLQYFVLHSIAM--TSET--TSCTVDGLKATKKFLQC---LGRYGNTPFLFPLYGQGELPQCFC 383 (491)
T ss_dssp TTSBHHHHHTTSSSCHHHHHHHHHHTTC----CC--SCBHHHHHHHHHHHHHH---TTSSSSSSEEEETTCTTHHHHHHH
T ss_pred cCCcHHHHHHHcCCChHHHHHHHhheec--cCCC--CccHHHHHHHHHHHHHH---HHhhCCCCeEeecCCcchHHHHHH
Confidence 5789999999999998876665543322 2111 11111121 22334333 233456678899999999999999
Q ss_pred HHhhhcCceEEeCCCeeEEEeC--CCcE-EEEeCCCcEEeCCEEEEc
Q 035870 223 KQLESWGCQIRTSSEVCSVLPA--DKGC-TIVCGDGSREFYNSCVMA 266 (842)
Q Consensus 223 ~~l~~~G~~i~~~~~V~~I~~~--~~~v-~V~~~~G~~~~ad~VV~A 266 (842)
+...-.|+...+|++|.+|..+ ++++ .|.+.+|+++.|++||+.
T Consensus 384 R~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~ 430 (491)
T d1vg0a1 384 RMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE 430 (491)
T ss_dssp HHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred HHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEEC
Confidence 9988889999999999999884 4445 577888999999999887
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.88 E-value=4e-09 Score=102.31 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 614 QMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 614 q~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
|-+.+..+++.. ...+||||||++|.-+..+|+. .+++|+.+|.+++..+.|++++++.|+.++++++.+|+.+.
T Consensus 47 ~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 47 EGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 345556666665 3569999999999999999986 36899999999999999999999999999999999997654
Q ss_pred c--------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 692 A--------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 692 ~--------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
- ..++||.|+.-. ..+++..+++.+.++|+|||.+++..+..
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred HHHHHhccccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 2 146899999853 23458899999999999999999976543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=2.9e-09 Score=100.45 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=85.5
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~~~ 706 (842)
.+.+|||++||+|.+++.++.+...+|+.||.|+..++.++++++..+.. +++++.+|+.+.. ...+||+|++....
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccccccccCEEEEcCcc
Confidence 56799999999999999999884458999999999999999999988775 7899999976553 45789999998875
Q ss_pred hhcChhhHHHHHHHHHh--ccccCcEEEEEe
Q 035870 707 EAVGHEFMEEFFGCCES--LLAEDGLLVLQF 735 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~--~LkpgG~~~~~~ 735 (842)
.. ......+..+.+ +|+|+|.++++.
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 43 235667777654 699999999964
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.87 E-value=1.5e-08 Score=87.53 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=40.4
Q ss_pred HHHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEe-CCEEEEcc
Q 035870 219 NKVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREF-YNSCVMAL 267 (842)
Q Consensus 219 ~~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~-ad~VV~A~ 267 (842)
+.+.+.++++|+++++++.|++|+..+++ +.|++++|++++ +|.||+|+
T Consensus 67 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 67 NVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred HHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 34556677779999999999999976654 889999998875 79999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.86 E-value=1.7e-08 Score=89.58 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=38.5
Q ss_pred HHHhhhcCceEEeCCCeeEEEeCCCc--E-EEEeCCCcEEeCCEEEEccC
Q 035870 222 RKQLESWGCQIRTSSEVCSVLPADKG--C-TIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 222 ~~~l~~~G~~i~~~~~V~~I~~~~~~--v-~V~~~~G~~~~ad~VV~A~p 268 (842)
.+.++++|+++++|+.|++|+...+. + .|.+++|+++.||.||+|+.
T Consensus 84 ~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 84 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred hhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 34555669999999999999886543 4 58899999999999999873
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=9.5e-10 Score=102.59 Aligned_cols=39 Identities=36% Similarity=0.560 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||+|||+||+.|+++|++|+|||+.+.+||..
T Consensus 44 k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l 82 (179)
T d1ps9a3 44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 82 (179)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred cEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceE
Confidence 689999999999999999999999999999999999943
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.84 E-value=1.4e-08 Score=103.67 Aligned_cols=62 Identities=27% Similarity=0.465 Sum_probs=48.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
+||+|||||+|||++|+.|+++|+ +|+|+|+++.++...+.. . ..++..++++++|+.....
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i------------~----l~~~~~~~l~~~~~~~~~~ 64 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI------------N----IQPAAVEALAELGLGPALA 64 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEE------------E----ECHHHHHHHHHTTCHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEE------------E----ECHHHHHHHHHcCchhhhH
Confidence 589999999999999999999996 999999988776422211 1 2356778888888775543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.83 E-value=1.4e-08 Score=96.65 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=78.2
Q ss_pred CCCCeEEEeccCchHH----HHHHHHhc-----CCEEEEEcCCHHHHHHHHHHH--------------H----HcCCC--
Q 035870 628 SKGQEVLEIGCGWGTL----AIEIVKRT-----GCKYTGITLSEEQLKYAEMKV--------------K----EAGLQ-- 678 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~----~~~la~~~-----~~~v~gid~s~~~~~~a~~~~--------------~----~~~l~-- 678 (842)
.+..+|+++|||+|.- ++.+.+.. ..+|+|+|+|+..++.|++-. . ..+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4556999999999974 44444331 247999999999999998421 0 10100
Q ss_pred ----------CCeEEEEccccCCc--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 679 ----------DLIRLYLCDYRQLA--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 679 ----------~~v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
..+++...+..+.. +.++||+|+|.+++.++.++...++++++++.|+|||+|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 13455555544332 45789999999999999998899999999999999999988
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.81 E-value=1.7e-08 Score=87.60 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=37.5
Q ss_pred HHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC-CC--cEEeCCEEEEc
Q 035870 220 KVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG-DG--SREFYNSCVMA 266 (842)
Q Consensus 220 ~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G--~~~~ad~VV~A 266 (842)
.+.+.++++|++|++++.|++|+.+++++.|++. +| +++.||.||+.
T Consensus 68 ~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 68 IIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp HHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred HHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 3456667779999999999999999888777654 44 46899999974
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=98.79 E-value=4.1e-09 Score=112.27 Aligned_cols=31 Identities=39% Similarity=0.562 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
||||||+|++|+.+|++|+++|++|+|||+.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 7999999999999999999999999999993
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.79 E-value=3.2e-08 Score=85.90 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=40.7
Q ss_pred HHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCC---cEEeCCEEEEccC
Q 035870 220 KVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDG---SREFYNSCVMALH 268 (842)
Q Consensus 220 ~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~A~p 268 (842)
.+.+.++++|++++++++|++|+.+++++.|++.++ +++.||.||+|+.
T Consensus 68 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 68 EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp HHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred HHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 345666777999999999999999999988887654 4789999999973
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.77 E-value=3.1e-08 Score=86.53 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||+.|+-+|..|++.|.+|+|+|+.++
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 5899999999999999999999999999999765
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.77 E-value=4.7e-08 Score=84.92 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||+.|+-+|..|++.|.+|+|+|++++
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5899999999999999999999999999999665
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=4e-08 Score=87.73 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 221 VRKQLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 221 L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
+.+.++++|+++++|+.|++|+.+++++.|++++|+++.||.||+|+.
T Consensus 89 ~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 89 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred HHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 456667779999999999999999999999999999999999999974
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.73 E-value=1.6e-08 Score=105.99 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCCcEE---EE-eCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADKGCT---IV-CGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~---V~-~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+...|.+.+++.|++|+.+++|.++..+++++. +. ..+|+ ++.|+.||+||...
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~ 219 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccc
Confidence 46888899999999999999999999999888742 22 24675 47899999998754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.69 E-value=2.4e-08 Score=97.44 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KA 694 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~ 694 (842)
+.++.+++.+++.++++|||||||+|.++..+++. +.+|+++|+++.+++.++++.... ++++++++|+.+++ +.
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc
Confidence 55678899999999999999999999999999987 789999999999999999886543 48999999999887 44
Q ss_pred CCccEEEEcchh
Q 035870 695 NKYDRIISCEMI 706 (842)
Q Consensus 695 ~~fD~i~s~~~~ 706 (842)
.....|++|-..
T Consensus 84 ~~~~~vv~NLPY 95 (235)
T d1qama_ 84 NQSYKIFGNIPY 95 (235)
T ss_dssp SCCCEEEEECCG
T ss_pred cccceeeeeehh
Confidence 445577877554
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.69 E-value=1.1e-07 Score=82.14 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCC-cEEEEeCCCcEEeCCEEEEcc
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADK-GCTIVCGDGSREFYNSCVMAL 267 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~A~ 267 (842)
.+.+.+.++++|+++++|+.|++|+..++ .+.|++++|+++.||.||+|+
T Consensus 67 ~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 67 REELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp HHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 33456677778999999999999987655 578999999999999999985
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=7e-08 Score=84.05 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+++|||||+.|+-.|..|++.|.+|+|+|++++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 5899999999999999999999999999999665
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.65 E-value=1.6e-07 Score=81.26 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=41.8
Q ss_pred HHHHHhhhcCceEEeCCCeeEEEeCCCc-EEEEeCCCcEEeCCEEEEccC
Q 035870 220 KVRKQLESWGCQIRTSSEVCSVLPADKG-CTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 220 ~L~~~l~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~A~p 268 (842)
.+.+.++++|++|++|+.|++|..++++ ..|++++|+++.||.||+|+.
T Consensus 67 ~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 67 QLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp HHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 3556677779999999999999987665 578999999999999999974
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=98.63 E-value=1.2e-08 Score=108.68 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
||||||+|++|+.+|++|+++|++|+|||+.
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7999999999999999999999999999983
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=9.5e-08 Score=90.71 Aligned_cols=99 Identities=16% Similarity=0.311 Sum_probs=87.8
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhh
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIE 707 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~ 707 (842)
++.+|+|||||.|--++.+|-. |+.+++.+|.+..-+...++-+...++. ++++++..+++.....+||+|+|..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhccccccceehhhhh--
Confidence 4579999999999999988865 7899999999999999999999999996 89999999999876678999998644
Q ss_pred hcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 708 AVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 708 ~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.. +..+++-+..+++++|.+++.
T Consensus 142 --~~--~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 --AS--LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp --SS--HHHHHHHHTTSEEEEEEEEEE
T ss_pred --cC--HHHHHHHHHHhcCCCcEEEEE
Confidence 33 788999999999999999884
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.61 E-value=9.1e-08 Score=97.89 Aligned_cols=63 Identities=33% Similarity=0.459 Sum_probs=47.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcccc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDMEMS 78 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~~~ 78 (842)
||+|||||++||++|..|+++|++|+|+|+++..+..- +.++..+ .++..++++++|+.....
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~----------~~~~~~l----~~~~~~~l~~lg~~~~l~ 66 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLG----------RIRAGVL----EQGMVDLLREAGVDRRMA 66 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHT----------CCCCCEE----CHHHHHHHHHTTCCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC----------CceEEEE----CHHHHHHHHHcCchHHHH
Confidence 79999999999999999999999999999986432100 0111122 357789999999876653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.58 E-value=1.8e-08 Score=96.63 Aligned_cols=39 Identities=33% Similarity=0.757 Sum_probs=36.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~GG~~ 39 (842)
|+|+|||||++||+||++|+++|+ +|+|+|+++.+||..
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~ 44 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 44 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence 799999999999999999999998 599999999999954
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.57 E-value=1.2e-07 Score=82.60 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+++|||||+.||-.|..|++.|.+|+|+|++++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 5899999999999999999999999999999665
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.56 E-value=6.2e-09 Score=102.26 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KAN 695 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~ 695 (842)
.++.+++.+++.++++|||||||+|.++..+++. +.+|++||+++.+++.++++... .++++++++|+.+++ +..
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhccccccc
Confidence 3567899999999999999999999999999998 88999999999999998877643 248999999999888 556
Q ss_pred CccEEEEcchhhhcCh
Q 035870 696 KYDRIISCEMIEAVGH 711 (842)
Q Consensus 696 ~fD~i~s~~~~~~~~~ 711 (842)
.++.|+++-.. |+..
T Consensus 93 ~~~~vv~NLPY-~Ist 107 (245)
T d1yuba_ 93 QRYKIVGNIPY-HLST 107 (245)
T ss_dssp SEEEEEEECCS-SSCH
T ss_pred eeeeEeeeeeh-hhhH
Confidence 77888888764 6655
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.56 E-value=2.2e-08 Score=100.79 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=33.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
|||||||||++||+||++|+++|++|+|+|+....+|
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~ 43 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 6899999999999999999999999999999764444
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.55 E-value=5.6e-08 Score=97.49 Aligned_cols=110 Identities=25% Similarity=0.292 Sum_probs=84.5
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc---------CCCCCeEEEEccccCCc-cCCC
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA---------GLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~---------~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.++..+||.||+|.|..+..+.+.+..+|+.+|+++++++.|++..... .-.++++++.+|..+.. ..++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3556799999999999999988876679999999999999999765321 22458999999987654 4578
Q ss_pred ccEEEEcchhhhcCh-h--hHHHHHHHHHhccccCcEEEEEeec
Q 035870 697 YDRIISCEMIEAVGH-E--FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 697 fD~i~s~~~~~~~~~-~--~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
||+|++-..- ..+. . .-.++++.+++.|+|||.++++..+
T Consensus 150 yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 150 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 9999974321 1111 0 1268999999999999999997643
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.55 E-value=8.2e-08 Score=82.78 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=31.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||+.|+-+|..|++.|.+|+|+|+.++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 5899999999999999999999999999999665
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=6.8e-08 Score=98.41 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=84.7
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--C--CCCCeEEEEccccCCc--cCCCccE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA--G--LQDLIRLYLCDYRQLA--KANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~--~--l~~~v~~~~~d~~~~~--~~~~fD~ 699 (842)
.+..++||.||+|.|..+..+.+. +..+|+++|++++.++.|++.+... + -.++++++.+|.++.- .+++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 345679999999999999999887 4579999999999999999986432 1 1358999999988764 4578999
Q ss_pred EEEcch--h-hhcChh--hHHHHHHHHHhccccCcEEEEEee
Q 035870 700 IISCEM--I-EAVGHE--FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 700 i~s~~~--~-~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|++-.. . ...+.. .-.++++.+++.|+|||.++++..
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 996431 1 110111 126899999999999999998754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.51 E-value=2.2e-07 Score=80.86 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||++|+-+|..|++.|.+|+|+|++++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 5799999999999999999999999999998554
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.50 E-value=2.1e-07 Score=81.04 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCceEEeCCCeeEEEeCCCcEEEEeC--CC--cEEeCCEEEEccC
Q 035870 218 VNKVRKQLESWGCQIRTSSEVCSVLPADKGCTIVCG--DG--SREFYNSCVMALH 268 (842)
Q Consensus 218 ~~~L~~~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~A~p 268 (842)
.+.+.+.++++|++++++++|++++.+++++.|++. +| ++++||.|++|+.
T Consensus 70 ~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 70 VKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp HHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred HHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 334566777789999999999999999988766654 33 3699999999974
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.49 E-value=2.2e-07 Score=87.24 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=84.1
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccccCC---c-cCCCccEEEEc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQD-LIRLYLCDYRQL---A-KANKYDRIISC 703 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~-~v~~~~~d~~~~---~-~~~~fD~i~s~ 703 (842)
.+.+|||+.||+|.+++.++.+...+|+.||.+...++..+++++..+..+ ...+...|..+. . ...+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 567999999999999999999844599999999999999999999988754 467777775432 1 34579999998
Q ss_pred chhhhcChhhHHHHHHHHHh--ccccCcEEEEEee
Q 035870 704 EMIEAVGHEFMEEFFGCCES--LLAEDGLLVLQFI 736 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~--~LkpgG~~~~~~~ 736 (842)
..... ......+..+.. +|+++|.++++..
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 88654 235677777654 7999999999653
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.49 E-value=1.8e-08 Score=99.84 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-------CeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-------VEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-------~~V~VlEa~~~~GG~~~ 40 (842)
++|+|||||+|||+||++|+++| ++|+|||+.+.+||..+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~ 49 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR 49 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence 37999999999999999999988 58999999999999764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.48 E-value=1.8e-07 Score=97.36 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=86.3
Q ss_pred HHcCCCCCCeEEEeccCchHHHHHHHHh------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCC
Q 035870 623 EKARVSKGQEVLEIGCGWGTLAIEIVKR------TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANK 696 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG~G~~~~~la~~------~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 696 (842)
..+..+++.+|||.+||+|.++..+.++ ...+++|+|+++.+++.|+.++...+. ...+.++|........+
T Consensus 111 ~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~ 188 (328)
T d2f8la1 111 KVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDP 188 (328)
T ss_dssp HHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCC
T ss_pred HHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccccccc
Confidence 3445678889999999999999988754 234799999999999999998877664 56788888766666689
Q ss_pred ccEEEEcchhhhcChh----------------hHHHHHHHHHhccccCcEEEEEe
Q 035870 697 YDRIISCEMIEAVGHE----------------FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 697 fD~i~s~~~~~~~~~~----------------~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
||+|+++..+...... ....++..+.+.|+|||++++..
T Consensus 189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 9999999876322111 12346889999999999987744
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=1.9e-07 Score=96.20 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.6
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~ 38 (842)
||+|||+|+|||+||+.++++ |.+|+|+||....||.
T Consensus 7 DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~ 45 (311)
T d1kf6a2 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence 899999999999999999986 6799999998877774
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.48 E-value=3.9e-08 Score=99.96 Aligned_cols=40 Identities=40% Similarity=0.584 Sum_probs=36.9
Q ss_pred cEEEECCChHHHHHHHHHHh-CCCeEEEEecCCCCCCCcee
Q 035870 2 RVAVIGAGISGLVSAYVLAK-AGVEVVLYEKDDYLGGHAKT 41 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~-~G~~V~VlEa~~~~GG~~~s 41 (842)
||+|||||+|||+||++|++ .|++|+|+|+++.+||.+.+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~ 75 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence 89999999999999999987 59999999999999997653
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.7e-07 Score=78.52 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||+.|+-+|..|++.|.+|+|+|++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 6899999999999999999999999999999665
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.45 E-value=5.7e-08 Score=95.78 Aligned_cols=40 Identities=38% Similarity=0.561 Sum_probs=37.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~~ 40 (842)
|+|+|||||+|||+||..|++.|++|+|+|+++.+||...
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~ 89 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN 89 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHH
T ss_pred ceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccc
Confidence 6899999999999999999999999999999999999654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=7.9e-07 Score=93.54 Aligned_cols=112 Identities=14% Similarity=0.223 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
...++.+++.+...++++|||+-||.|.++..+|+. +.+|+|+|.++++++.|+++++.+++. +++++.+|..+..
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhhh
Confidence 355677788888889999999999999999999987 789999999999999999999999997 8999999976643
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
...+||+|+....=. .....++.+.+ ++|.-.++++
T Consensus 276 ~~~~~~~~d~vilDPPR~-----G~~~~~~~l~~-~~~~~ivYVS 314 (358)
T d1uwva2 276 QPWAKNGFDKVLLDPARA-----GAAGVMQQIIK-LEPIRIVYVS 314 (358)
T ss_dssp SGGGTTCCSEEEECCCTT-----CCHHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhccCceEEeCCCCc-----cHHHHHHHHHH-cCCCEEEEEe
Confidence 346799999864321 12345555554 3666666663
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1e-06 Score=90.48 Aligned_cols=37 Identities=32% Similarity=0.482 Sum_probs=32.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||+|||+||+.+++.| +|+||||.+..||.+
T Consensus 9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s 45 (305)
T d1chua2 9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST 45 (305)
T ss_dssp SEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred CEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence 8999999999999999999988 999999999888743
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=7.6e-07 Score=92.56 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhhcCceEEeCCCeeEEEeCCC-cE----EEEeCCCc--EEeCCEEEEccChH
Q 035870 215 HSYVNKVRKQLESWGCQIRTSSEVCSVLPADK-GC----TIVCGDGS--REFYNSCVMALHAP 270 (842)
Q Consensus 215 ~~l~~~L~~~l~~~G~~i~~~~~V~~I~~~~~-~v----~V~~~~G~--~~~ad~VV~A~p~~ 270 (842)
..+...|.+.+++.+++++.++.+..+..+.+ ++ .+...+|+ .+.|+.||+|+...
T Consensus 143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~ 205 (330)
T d1neka2 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCc
Confidence 46888999999888999999999999877543 32 23345665 47899999999754
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.40 E-value=1e-06 Score=76.55 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||+.|+-.|..|++.|.+|+|+|+.++
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5799999999999999999999999999998654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=1.9e-07 Score=93.63 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=83.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
+...+||-||.|.|..+..+.+.+ ..+|+++|+++++++.+++.+.... + .++++++.+|..+.- .+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 455799999999999999999874 5689999999999999999765321 2 358999999977654 457899999
Q ss_pred Ecchhhhc-Chh--hHHHHHHHHHhccccCcEEEEEeec
Q 035870 702 SCEMIEAV-GHE--FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 702 s~~~~~~~-~~~--~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+-..-... +.. .-.++++.+++.|+|||.++++..+
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 75322111 111 2378999999999999999997643
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=5.6e-08 Score=95.68 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=36.0
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~~~ 40 (842)
+|+|||||+|||+||.+|+++ |++|+|||+.+.+||.++
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~ 43 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 43 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence 799999999999999999875 789999999999999765
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=7.7e-07 Score=82.60 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 618 VSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 618 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
++.+++.+.+++|..++|..||.|+.+..+.++ +++|+|+|.++++++.|+++ ..+++.+++.++.++.
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~ 80 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAA 80 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHH
Confidence 456788889999999999999999999999997 78999999999999999865 2348999999988875
Q ss_pred -cCCCccEEEEcchh-----hhcCh--hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 693 -KANKYDRIISCEMI-----EAVGH--EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 -~~~~fD~i~s~~~~-----~~~~~--~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
..+++|.|+....+ ....+ ......+....++|+|||++++..+.
T Consensus 81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 23689999984322 11111 12456788899999999999987654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.37 E-value=3.3e-07 Score=89.52 Aligned_cols=109 Identities=21% Similarity=0.369 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKA 694 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 694 (842)
..+.|++.+..+++.+|||.|||+|.++..+.+. ...+++|+|+++..+.. ..+..++++|.......
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~~ 76 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEPG 76 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCCS
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccccc
Confidence 4567888888899999999999999999888766 34679999999865432 23568899998877766
Q ss_pred CCccEEEEcchhhhcCh--------------------------h-hHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEAVGH--------------------------E-FMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~--------------------------~-~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.+||.|+++..+..... . ....++..+.+.|||||++.+..
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 89999999976532210 0 13456788899999999988754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=5.9e-07 Score=89.19 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCC
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKAN 695 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 695 (842)
+.++.+++.+.+.++++|||||||.|.++..+++. +.+|+++++++.+++..++++......++++++.+|+...+. .
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-~ 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-P 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-C
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-h
Confidence 45678888999999999999999999999999998 789999999999999999998776665689999999988763 2
Q ss_pred CccEEEEcchh
Q 035870 696 KYDRIISCEMI 706 (842)
Q Consensus 696 ~fD~i~s~~~~ 706 (842)
.++.||+|-..
T Consensus 86 ~~~~vV~NLPY 96 (278)
T d1zq9a1 86 FFDTCVANLPY 96 (278)
T ss_dssp CCSEEEEECCG
T ss_pred hhhhhhcchHH
Confidence 46788888654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.35 E-value=2e-06 Score=87.64 Aligned_cols=121 Identities=13% Similarity=0.161 Sum_probs=95.9
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~ 696 (842)
.....+.+++|++|||+.||.|+-+.+++.. ....++++|+++.-+...++++++.|.. ++.+...|...++ ....
T Consensus 107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~ 185 (313)
T d1ixka_ 107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVE 185 (313)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCC
T ss_pred chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccccccccc
Confidence 3445677899999999999999999999877 3468999999999999999999999986 7888888887776 5678
Q ss_pred ccEEEEcc------hhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 697 YDRIISCE------MIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 697 fD~i~s~~------~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
||.|+.-. ++..-++ ....+++.+..+.|||||+++..+++....
T Consensus 186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e 250 (313)
T d1ixka_ 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE 250 (313)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence 99999732 2211111 124577889999999999999998886543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=3.1e-07 Score=91.95 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCCeEEEEccccCCc--cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEA---GLQDLIRLYLCDYRQLA--KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~---~l~~~v~~~~~d~~~~~--~~~~fD~i 700 (842)
.+..++||-||.|.|..+..+.+. +..+|+.+|+++++++.|++.+... --.++++++.+|.+..- ..++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 456679999999999999999987 4579999999999999999976531 12359999999977654 44789999
Q ss_pred EEcchhh-hcCh-hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIE-AVGH-EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~-~~~~-~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++-..-. ..+. =.-.++++.+++.|+|||.++++..+
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 9853210 0111 12357899999999999999998654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=1.4e-06 Score=83.38 Aligned_cols=36 Identities=39% Similarity=0.554 Sum_probs=32.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC-CCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD-DYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~-~~~GG 37 (842)
||||||||+||++||+++++.|.+|+|+|.+ +.+|+
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~ 40 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM 40 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcc
Confidence 8999999999999999999999999999986 34443
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.34 E-value=1.1e-07 Score=92.73 Aligned_cols=38 Identities=37% Similarity=0.544 Sum_probs=36.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||+|||+||.++++.|.+|+|+|+++.+||.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~ 42 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC 42 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCee
Confidence 89999999999999999999999999999999999965
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.33 E-value=5.1e-07 Score=90.64 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=84.0
Q ss_pred CCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc---CCCCCeEEEEccccCCc---cCCCccEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEA---GLQDLIRLYLCDYRQLA---KANKYDRI 700 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~---~l~~~v~~~~~d~~~~~---~~~~fD~i 700 (842)
+...+||-||.|.|..+..+.+.++ .+|+.+|+++++++.+++..... .-.++++++.+|..+.- .+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4567999999999999999998744 68999999999999999976431 12458999999976544 34689999
Q ss_pred EEcch-----hhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEM-----IEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~-----~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++... -.++ .-.++++.+++.|+|||.++++..+
T Consensus 159 i~D~~dp~~~~~~L---~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 159 IVDSSDPIGPAKEL---FEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EECCCCTTSGGGGG---GSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhh---CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 98432 1222 2378999999999999999998644
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=2.1e-06 Score=74.39 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
++++|||||+.|+-.|..|++.|.+|+|+|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 57999999999999999999999999999863
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=1e-07 Score=93.80 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=36.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||+|||+||.+|++.|.+|+|+|+++.+||.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~ 44 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC 44 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEe
Confidence 89999999999999999999999999999999999965
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.32 E-value=1.7e-07 Score=99.35 Aligned_cols=39 Identities=36% Similarity=0.551 Sum_probs=36.4
Q ss_pred cEEEECCChHHHHHHHHHHh------CCCeEEEEecCCCCCCCce
Q 035870 2 RVAVIGAGISGLVSAYVLAK------AGVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~------~G~~V~VlEa~~~~GG~~~ 40 (842)
||||||||+|||+||++|++ +|++|+|||+...+|..+.
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~ 78 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL 78 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence 89999999999999999997 8999999999999988654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.31 E-value=1.2e-07 Score=93.15 Aligned_cols=38 Identities=34% Similarity=0.610 Sum_probs=36.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||.+|++.|.+|+|+|+.+.+||.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~ 45 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC 45 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence 89999999999999999999999999999999899844
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.31 E-value=2.6e-06 Score=89.38 Aligned_cols=38 Identities=37% Similarity=0.483 Sum_probs=34.0
Q ss_pred cEEEECCChHHHHHHHHHHh----CCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAK----AGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~----~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||+|||+||+.|++ +|.+|+|+||....||.+
T Consensus 23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s 64 (356)
T d1jnra2 23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA 64 (356)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence 89999999999999999975 699999999988777644
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.29 E-value=4e-07 Score=91.56 Aligned_cols=111 Identities=24% Similarity=0.253 Sum_probs=82.3
Q ss_pred CCCCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEccccCCc--cCCCccEE
Q 035870 627 VSKGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAG--L-QDLIRLYLCDYRQLA--KANKYDRI 700 (842)
Q Consensus 627 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~--l-~~~v~~~~~d~~~~~--~~~~fD~i 700 (842)
.+...+||-||.|.|..+..+.+.+. .+|+.+|+++++++.+++.+.... + .++++++.+|..+.- ..++||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 34567999999999999999998743 699999999999999998764321 1 258999999987765 45789999
Q ss_pred EEcchhhhcChh--hHHHHHHHHHhccccCcEEEEEeec
Q 035870 701 ISCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 701 ~s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
++-..-..-+.. .-.++++.+++.|+|||.++.+..+
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 985322111111 2478899999999999999998543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=4.1e-06 Score=84.09 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=92.9
Q ss_pred HHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCC
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANK 696 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~ 696 (842)
.....+..++|++|||+++|.|+-+.++++. .+.+|+++|+|+.-++..+++++..|+. ++.....|..... ..+.
T Consensus 93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~ 171 (284)
T d1sqga2 93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQ 171 (284)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCC
T ss_pred ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhccccc
Confidence 3455678899999999999999999999987 4478999999999999999999999986 4555444433222 4578
Q ss_pred ccEEEEc------chhhhcCh--------------hhHHHHHHHHHhccccCcEEEEEeecCCCcc
Q 035870 697 YDRIISC------EMIEAVGH--------------EFMEEFFGCCESLLAEDGLLVLQFISIPDER 742 (842)
Q Consensus 697 fD~i~s~------~~~~~~~~--------------~~~~~~~~~~~~~LkpgG~~~~~~~~~~~~~ 742 (842)
||.|+.- +++..-++ +....++.++.++|||||+++..+++.....
T Consensus 172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 237 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE 237 (284)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGG
T ss_pred ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhh
Confidence 9999973 23321111 1246778899999999999999988866543
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=2e-07 Score=96.12 Aligned_cols=40 Identities=40% Similarity=0.586 Sum_probs=37.0
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCeEEEEecCCCCCCCce
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA--GVEVVLYEKDDYLGGHAK 40 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~--G~~V~VlEa~~~~GG~~~ 40 (842)
+||+|||||++||+||++|+++ |++|+|+|+++.+||.+.
T Consensus 51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T d2gjca1 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 92 (311)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence 4899999999999999999964 999999999999999775
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=9.3e-06 Score=78.15 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=85.9
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCCCccEEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KANKYDRIIS 702 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~~fD~i~s 702 (842)
.++.+++|||+|-|--++.+|-. ++.+++.+|.+..-+...+.-..+.++. ++.+++..++++. ..++||+|+|
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEE
Confidence 35679999999999988888864 7899999999999999999999999997 8999999887664 2368999999
Q ss_pred cchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 703 CEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.. +.. +..++.-+..++++||.+++.
T Consensus 148 RA----va~--l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 148 RA----VAR--LSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EC----CSC--HHHHHHHHGGGEEEEEEEEEE
T ss_pred hh----hhC--HHHHHHHHhhhcccCCEEEEE
Confidence 74 333 789999999999999999883
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=8.6e-07 Score=88.25 Aligned_cols=109 Identities=23% Similarity=0.254 Sum_probs=84.3
Q ss_pred CCCCeEEEeccCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHc-C--CCCCeEEEEccccCCc--cCCCccEEE
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKRT-GCKYTGITLSEEQLKYAEMKVKEA-G--LQDLIRLYLCDYRQLA--KANKYDRII 701 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gid~s~~~~~~a~~~~~~~-~--l~~~v~~~~~d~~~~~--~~~~fD~i~ 701 (842)
++..+||-||.|.|..+..+.+.+ ..+|+.+|++++.++.|++..... + -.++++++.+|....- .+.+||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 456799999999999999999874 469999999999999999976432 1 1358999999977654 457899999
Q ss_pred EcchhhhcChh--hHHHHHHHHHhccccCcEEEEEee
Q 035870 702 SCEMIEAVGHE--FMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 702 s~~~~~~~~~~--~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
+-..-..-... .-.++++.+++.|+|||.++.+..
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 85321110000 236899999999999999998753
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=3.8e-07 Score=86.59 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
+||+|||||++||+||.+|++.|.+|+|+|+....|.
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~ 42 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQ 42 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGG
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccc
Confidence 4899999999999999999999999999998665443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.15 E-value=1.9e-06 Score=82.11 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=36.8
Q ss_pred HhhhcCceEEeCCCeeEEEeCCCcEEEEe-CCCc--EEeCCEEEEccCh
Q 035870 224 QLESWGCQIRTSSEVCSVLPADKGCTIVC-GDGS--REFYNSCVMALHA 269 (842)
Q Consensus 224 ~l~~~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VV~A~p~ 269 (842)
.++++|++++++++|++|+.+++++.+.. .+|+ ++.+|.+|+|+..
T Consensus 65 ~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~ 113 (198)
T d1nhpa1 65 KMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA 113 (198)
T ss_dssp HHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecc
Confidence 44455999999999999999888887764 4454 4789999999874
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=5e-07 Score=87.72 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||.+|++.|.+|+|+|+ +.+||.+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc 40 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTC 40 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeE
Confidence 899999999999999999999999999999 4688843
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.5e-05 Score=80.30 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=88.6
Q ss_pred HHHcCCCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cCC
Q 035870 622 IEKARVSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KAN 695 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~~ 695 (842)
...+..++|++|||++||.|+-+.++|+. ...+|+++|+|+.-++..++++++.|+. ++.+...|...+. ..+
T Consensus 87 ~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 87 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGT
T ss_pred ccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccc
Confidence 34567889999999999999999999876 3578999999999999999999999986 7999999988765 236
Q ss_pred CccEEEEcc------hhhhcCh------------h----hHHHHHHHHHhccccCcEEEEEeecCCCc
Q 035870 696 KYDRIISCE------MIEAVGH------------E----FMEEFFGCCESLLAEDGLLVLQFISIPDE 741 (842)
Q Consensus 696 ~fD~i~s~~------~~~~~~~------------~----~~~~~~~~~~~~LkpgG~~~~~~~~~~~~ 741 (842)
+||.|+... ++...++ . ....++..+. .|||||+++..+++....
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence 799999742 2221111 0 1123444444 479999999988876543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.10 E-value=4.8e-06 Score=89.26 Aligned_cols=122 Identities=12% Similarity=0.119 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC-
Q 035870 615 MRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--------------GCKYTGITLSEEQLKYAEMKVKEAGLQD- 679 (842)
Q Consensus 615 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--------------~~~v~gid~s~~~~~~a~~~~~~~~l~~- 679 (842)
+..++.|++.+...++.+|+|-.||+|++...+.+.. ...+.|+|+++.....|+-++.-.+...
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 3556788888888889999999999999999887651 1359999999999999999888777642
Q ss_pred CeEEEEccccCCccCCCccEEEEcchhhhcCh---------------hhHHHHHHHHHhccccCcEEEEEee
Q 035870 680 LIRLYLCDYRQLAKANKYDRIISCEMIEAVGH---------------EFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 680 ~v~~~~~d~~~~~~~~~fD~i~s~~~~~~~~~---------------~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
...+...|..+..+..+||+|+++..+..-.. .....++..+.+.|||||++.+...
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 45678888776666689999999988732211 1134589999999999999887543
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.10 E-value=7.9e-07 Score=86.88 Aligned_cols=37 Identities=41% Similarity=0.475 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~ 38 (842)
||+|||||+|||+||.+|++.|.+|+|+|+....+|.
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~ 41 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK 41 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence 8999999999999999999999999999997766653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=1.5e-06 Score=85.16 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCcc--
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAK-- 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-- 693 (842)
+.++.+++.+.+.+++.|||||||.|.++..+++. +.+|+++|+++.+++..+++.... ++++++.+|+.+++.
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~ 83 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhcccc
Confidence 45678899999999999999999999999999987 789999999999999998754322 489999999988751
Q ss_pred ----CCCccEEEEcch
Q 035870 694 ----ANKYDRIISCEM 705 (842)
Q Consensus 694 ----~~~fD~i~s~~~ 705 (842)
.+.--.|+++-.
T Consensus 84 ~~~~~~~~~~vvgNlP 99 (252)
T d1qyra_ 84 LAEKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHHHTSCEEEEEECC
T ss_pred cccccCCCeEEEecch
Confidence 122236777644
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.06 E-value=5.7e-07 Score=88.53 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
||+|||||++||+||.++++.|.+|+|+|+.+..|
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~ 39 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP 39 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 89999999999999999999999999999966544
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.06 E-value=9.2e-07 Score=86.09 Aligned_cols=38 Identities=39% Similarity=0.557 Sum_probs=33.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++||+||.++++.|.+|+|+|+. .+||.+
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~ 41 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC 41 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcce
Confidence 48999999999999999999999999999994 467633
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.05 E-value=2e-06 Score=90.31 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=45.9
Q ss_pred cEEEECCChHHHHHHHHHH-----hCCCeEEEEecCCCCCCCceeEeeCCeeeecceEeecCCCchhHHHHHHHcCCCcc
Q 035870 2 RVAVIGAGISGLVSAYVLA-----KAGVEVVLYEKDDYLGGHAKTVTFDGVDLDLGFMVFNRVTYPNMMEFFESLGVDME 76 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~-----~~G~~V~VlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~l~~~lGl~~~ 76 (842)
||+|||||++||++|..|+ ++|++|+|||+++.+.-..+ +.. ..++..++++++|+..+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r------------~~~----l~~~~~~~L~~lGl~~~ 72 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQ------------ADG----LQCRTLESLKNLGLADK 72 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCS------------CCE----ECHHHHHHHHTTTCHHH
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCe------------EEE----ECHHHHHHHHHcCChHH
Confidence 8999999999999999996 57999999999876532111 111 23577889999998655
Q ss_pred c
Q 035870 77 M 77 (842)
Q Consensus 77 ~ 77 (842)
.
T Consensus 73 i 73 (360)
T d1pn0a1 73 I 73 (360)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.2e-06 Score=82.40 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=32.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++||+||.++++.|.+|+|+|++ .||++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~ 38 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQI 38 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGG
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcc
Confidence 8999999999999999999999999999973 67754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1e-05 Score=74.78 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=81.5
Q ss_pred HHHHHHHHHcC-CCCCCeEEEeccCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc
Q 035870 616 RKVSLLIEKAR-VSKGQEVLEIGCGWGTLAIEIVKR--TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA 692 (842)
Q Consensus 616 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 692 (842)
-|+.+|.++.+ ++++.+|||+||+.|+++.++++. ....|+++|+.+- ..+ +++.++++|+.+..
T Consensus 8 fKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~ 75 (180)
T d1ej0a_ 8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDEL 75 (180)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHH
T ss_pred HHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccch
Confidence 35566777766 489999999999999999999887 4478999998761 123 37899999986532
Q ss_pred ---------cCCCccEEEEcchhhhcChh---------hHHHHHHHHHhccccCcEEEEEeec
Q 035870 693 ---------KANKYDRIISCEMIEAVGHE---------FMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 ---------~~~~fD~i~s~~~~~~~~~~---------~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
..++||+|+|-.+...-++. -....+.-+.++||+||.+++-.+.
T Consensus 76 ~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 76 VMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 34689999997654333222 1335566778999999999997664
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.00 E-value=3.1e-07 Score=90.98 Aligned_cols=32 Identities=38% Similarity=0.443 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|+|||||++|||+|++|+++|++|+|+|+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~ 32 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV 32 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence 79999999999999999999999987777763
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.98 E-value=1.3e-06 Score=84.97 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=34.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
.||+|||||++||+||.++++.|.+|+|+|+. .+||.|
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c 43 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTC 43 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence 38999999999999999999999999999984 577743
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.8e-06 Score=83.90 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=32.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGG 37 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG 37 (842)
||+|||||++||+||.++++.|.+|+|+|+ +.+||
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG 39 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVES-HKLGG 39 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCC
Confidence 899999999999999999999999999998 55666
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=2.1e-06 Score=81.34 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
+||+|||||++||+||.+|++.|.+|+|+|+...
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~ 39 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA 39 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence 5899999999999999999999999999997654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=9.3e-06 Score=84.23 Aligned_cols=101 Identities=16% Similarity=0.060 Sum_probs=81.9
Q ss_pred CCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC--------------CeEEEEccccCCc-
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQD--------------LIRLYLCDYRQLA- 692 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~--------------~v~~~~~d~~~~~- 692 (842)
.+.+|||..||+|..++..|.+ ...+|+..|+|++.++.++++++.+++.+ ++.+.+.|...+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 5679999999999999988776 44589999999999999999999987642 3667777765554
Q ss_pred -cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 -KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 -~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
....||+|..-. ++. ...++..+-+.++.||.++++.
T Consensus 125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCC--cHHHHHHHHHHhccCCEEEEEe
Confidence 346799998765 333 4678888999999999999964
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=2.3e-06 Score=85.46 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++|++||.++++.|.+|+|+|+ +.+||.|
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc 39 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTC 39 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeE
Confidence 899999999999999999999999999998 5578844
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.88 E-value=4e-06 Score=88.60 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
||||||||++|+++|.+|+++|++|+|||+....+
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~ 40 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS 40 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence 89999999999999999999999999999954433
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.83 E-value=5.1e-06 Score=82.88 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=36.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCCCCc
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLGGHA 39 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~GG~~ 39 (842)
||+|||||++|+.||..|++.|.+|+|+|+.+.+||.|
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c 81 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC 81 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence 79999999999999999999999999999999999954
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=3.4e-05 Score=84.67 Aligned_cols=146 Identities=11% Similarity=0.063 Sum_probs=88.8
Q ss_pred cCChHHHHhccCCC---CcccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc-------
Q 035870 582 DLSNELFSLFLDES---MTYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT------- 651 (842)
Q Consensus 582 d~~~~~~~~~l~~~---~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~------- 651 (842)
|...+.|+.++... ..-..|-|-++ +..++.|++.+...++.+|+|-.||+|++...+.+..
T Consensus 122 D~lG~~YE~ll~~~~~~~~~~~GqfyTP--------~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~ 193 (524)
T d2ar0a1 122 DDFGDMYEGLLQKNANETKSGAGQYFTP--------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDL 193 (524)
T ss_dssp -----------------------CCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHHhhhccccchhccc--------cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcc
Confidence 55667777777432 12222333333 3556778888888899999999999999998876541
Q ss_pred ------------CCEEEEEcCCHHHHHHHHHHHHHcCCCCC----eEEEEccccCCc--cCCCccEEEEcchhhhcCh--
Q 035870 652 ------------GCKYTGITLSEEQLKYAEMKVKEAGLQDL----IRLYLCDYRQLA--KANKYDRIISCEMIEAVGH-- 711 (842)
Q Consensus 652 ------------~~~v~gid~s~~~~~~a~~~~~~~~l~~~----v~~~~~d~~~~~--~~~~fD~i~s~~~~~~~~~-- 711 (842)
...++|+|+++.+...|+-++--.+...+ -.+...|....+ ...+||+|+++..+.--..
T Consensus 194 ~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~ 273 (524)
T d2ar0a1 194 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 273 (524)
T ss_dssp TTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCC
T ss_pred cccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCcccccccc
Confidence 12589999999999999988766554322 133444433322 3468999999987632211
Q ss_pred ----------hhHHHHHHHHHhccccCcEEEEEe
Q 035870 712 ----------EFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 712 ----------~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
..--.++..+.+.|||||++.+..
T Consensus 274 ~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 274 ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp CCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 112358999999999999988744
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.78 E-value=2.8e-05 Score=71.38 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
+|+|||||++|+.+|..|++ +.+|+|+|+++.
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~ 33 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV 33 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence 79999999999999999975 789999998654
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=1e-05 Score=77.74 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=37.6
Q ss_pred HhhhcCceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccCh
Q 035870 224 QLESWGCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALHA 269 (842)
Q Consensus 224 ~l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p~ 269 (842)
.++++|++++++++|++|+.+++ +|++++|+++.||.||+|+..
T Consensus 92 ~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~ 135 (213)
T d1m6ia1 92 HIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG 135 (213)
T ss_dssp TSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred HHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence 45566899999999999987766 577899999999999999874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.68 E-value=4.7e-05 Score=69.86 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=71.9
Q ss_pred HHHcCCCCCCeEEEeccC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cccCCc--cCCCc
Q 035870 622 IEKARVSKGQEVLEIGCG-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC-DYRQLA--KANKY 697 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~--~~~~f 697 (842)
+.+.+++||++||-+||| .|.++..+++..|++|+++|.|++-++.+++. |.. .++.. +-.+.. ..+.|
T Consensus 20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCE
T ss_pred HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhccc
Confidence 456788999999999999 78888888888899999999999988888764 532 23322 111111 34689
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
|.|+..-.-.+ ...+....++|+|+|++++...
T Consensus 93 d~vi~~~~~~~------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 93 DLIVVCASSLT------DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEEEECCSCST------TCCTTTGGGGEEEEEEEEECCC
T ss_pred ceEEEEecCCc------cchHHHHHHHhhccceEEEecc
Confidence 99887532211 1124557889999999998543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.64 E-value=3.3e-05 Score=74.22 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC
Q 035870 617 KVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-----TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL 691 (842)
Q Consensus 617 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 691 (842)
.++.++..+. +.+|||||+++|+-+..++.. ..++|+++|+++........ ..++++++++|..+.
T Consensus 71 ~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~ 141 (232)
T d2bm8a1 71 VYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDL 141 (232)
T ss_dssp HHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCS
T ss_pred HHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccH
Confidence 3456666653 459999999999888776643 35799999998754433221 234899999997654
Q ss_pred c-----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 A-----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 ~-----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
. ....+|.|+.-.. |........+ .+..+|+|||++++.+.
T Consensus 142 ~~~~~l~~~~~dlIfID~~--H~~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 142 TTFEHLREMAHPLIFIDNA--HANTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGGGSSSCSSEEEEESS--CSSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred HHHHHHHhcCCCEEEEcCC--cchHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 3 3456888876543 3333223332 35689999999999775
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.55 E-value=1.5e-05 Score=78.12 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDYLG 36 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~~G 36 (842)
||||||||+||++||.++++.|. +|+|+|+....+
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~ 40 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG 40 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence 89999999999999999999885 699999976533
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=1.4e-05 Score=78.09 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC---CeEEEEecCCCCCCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAG---VEVVLYEKDDYLGGH 38 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G---~~V~VlEa~~~~GG~ 38 (842)
+|+|||||+||++||.++++.| .+|+|+|+ ..+||.
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~ 41 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGA 41 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCce
Confidence 7999999999999999987754 68999998 667874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.49 E-value=4.8e-05 Score=70.87 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=70.4
Q ss_pred HHcCCCCCCeEEEeccC-chHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---cccC-------
Q 035870 623 EKARVSKGQEVLEIGCG-WGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLC---DYRQ------- 690 (842)
Q Consensus 623 ~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~---d~~~------- 690 (842)
+...+++|++||-+||| .|.++..+|+..|+ +|+++|.+++.++.+++. |.. .++.. |..+
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHHHHHH
Confidence 44567899999999998 48888899988887 899999999999888654 432 22221 1111
Q ss_pred CccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 691 LAKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 691 ~~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
+.....+|+|+.. ++. +..++...++|+|||++++....
T Consensus 95 ~~~~~g~Dvvid~-----vG~---~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 95 ITHGRGADFILEA-----TGD---SRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp HTTTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred hhCCCCceEEeec-----CCc---hhHHHHHHHHhcCCCEEEEEeec
Confidence 1123469998853 333 34567788999999999875443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.49 E-value=0.00038 Score=70.71 Aligned_cols=173 Identities=13% Similarity=0.183 Sum_probs=105.6
Q ss_pred CCeEEEeccCchHHHHHHHHh-----------------cCCEEEEEcCCHHHHHHHHHHHHHcC-CCCC--eEEEEccc-
Q 035870 630 GQEVLEIGCGWGTLAIEIVKR-----------------TGCKYTGITLSEEQLKYAEMKVKEAG-LQDL--IRLYLCDY- 688 (842)
Q Consensus 630 ~~~vLDiGcG~G~~~~~la~~-----------------~~~~v~gid~s~~~~~~a~~~~~~~~-l~~~--v~~~~~d~- 688 (842)
.-+|.|+||..|..++.+.+. +..+|.--|+-..-....=+.+.... ...+ +..+-+.+
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 367999999999887543322 12345555543322222211111110 0001 12233332
Q ss_pred cCCccCCCccEEEEcchhhhcCh-------------------------------hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 689 RQLAKANKYDRIISCEMIEAVGH-------------------------------EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 689 ~~~~~~~~fD~i~s~~~~~~~~~-------------------------------~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
..+-|+++.|.++|...+|++.. +++..+|+.=.+-|+|||++++...+
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 33337789999999999998731 24667888888899999999999888
Q ss_pred CCCcccccccC--------------------ccchhhhcccCCCCCCCHHHHHHHHhhcCCcEEEEEEecC---------
Q 035870 738 IPDERYNEYRL--------------------SSDFIKEYIFPGGCLPSLSRITSAMSVASRLCVEQVENIG--------- 788 (842)
Q Consensus 738 ~~~~~~~~~~~--------------------~~~~~~~~i~p~~~~~~~~~~~~~~~~~~gf~v~~~~~~~--------- 788 (842)
.++........ ..+-+..+-+| -+.||.+|+...+++...|+++.++.+.
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P-~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~ 290 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKD 290 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSC
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCc-cccCCHHHHHHHhccCCCeeeeeeEeeeccccccccc
Confidence 76532211100 11223445556 4779999999999887779988887542
Q ss_pred -----------ccHHHHHHHHHHHHH
Q 035870 789 -----------IHYYQTLRCWRKNFM 803 (842)
Q Consensus 789 -----------~~y~~tl~~w~~~~~ 803 (842)
..|+.+++.|.+.+-
T Consensus 291 ~~~~~d~~~~~~~~a~~~RA~~e~~l 316 (359)
T d1m6ex_ 291 GDGGGSVEEEGYNVARCMRAVAEPLL 316 (359)
T ss_dssp TTCCSSTTTTTTHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 247788888877543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=4.3e-05 Score=62.22 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (842)
|+|+|||.|.+|+|+|.+|.+.|.+|+++|.+...
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~ 40 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP 40 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence 68999999999999999999999999999986653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=97.47 E-value=2.9e-05 Score=72.33 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG--VEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G--~~V~VlEa~~~ 34 (842)
|+|+|||||++|+.+|..|++.| .+|+|+|+++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 79999999999999999999987 58999998765
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.44 E-value=4.9e-05 Score=72.00 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-ccCCcc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD-YRQLAK 693 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d-~~~~~~ 693 (842)
.|+..+.++..++|+.+|+|+|||.|+++.+++++ ....|.|+|+--...+.-. .....+. +-+++...+ +..+ +
T Consensus 53 ~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~-~~~~~~~-ni~~~~~~~dv~~l-~ 129 (257)
T d2p41a1 53 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI-PMSTYGW-NLVRLQSGVDVFFI-P 129 (257)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCSTTG-GGEEEECSCCTTTS-C
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc-ccccccc-ccccchhhhhHHhc-C
Confidence 56677777777899999999999999999999977 3357888888422100000 0000011 123444333 3333 4
Q ss_pred CCCccEEEEcchhhhcCh-----hhHHHHHHHHHhccccCcEEEEEeec
Q 035870 694 ANKYDRIISCEMIEAVGH-----EFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~-----~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
.+..|.|+|--. ++-++ +.-...++-+.+.|+|||.|++-.+.
T Consensus 130 ~~~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 130 PERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCcCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 578999999632 22222 11235677778999999999886553
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.43 E-value=6.3e-05 Score=72.47 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=70.3
Q ss_pred HHHHHHcCCCCC--CeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------CCCeEEEEccc
Q 035870 619 SLLIEKARVSKG--QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGL--------QDLIRLYLCDY 688 (842)
Q Consensus 619 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l--------~~~v~~~~~d~ 688 (842)
+.+.+.++++++ .+|||.-||.|..+..+|.. |++|+++|-|+......++.++.... ..+++++++|.
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 356667777655 48999999999999999987 89999999999887776665543221 23789999997
Q ss_pred cCCc--cCCCccEEEEcchhhhcC
Q 035870 689 RQLA--KANKYDRIISCEMIEAVG 710 (842)
Q Consensus 689 ~~~~--~~~~fD~i~s~~~~~~~~ 710 (842)
.+.. ..++||+|+.-.|+.+-.
T Consensus 155 ~~~L~~~~~~~DvIYlDPMFp~~~ 178 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMFPHKQ 178 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCCC
T ss_pred HHHHhccCCCCCEEEECCCCcccc
Confidence 6543 346899999999987653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.34 E-value=3e-05 Score=75.73 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
||+|||||+|||+||.++++.|. +|+|+|+..
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~ 37 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM 37 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence 89999999999999999999875 689999854
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.31 E-value=5.8e-05 Score=78.81 Aligned_cols=31 Identities=35% Similarity=0.635 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+||||||.+|+..|.+|+++|.+|+|||+.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 8999999999999999999999999999994
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.30 E-value=0.00082 Score=61.34 Aligned_cols=100 Identities=23% Similarity=0.256 Sum_probs=72.8
Q ss_pred HHHHcCCCCCCeEEEeccC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccc-CC-------
Q 035870 621 LIEKARVSKGQEVLEIGCG-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYR-QL------- 691 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~------- 691 (842)
.+++.++++|++||-+||| .|.++..+++..|++|+++|.+++-++.|++. |. ... +..|.. +.
T Consensus 18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~~~-~~~~~~~~~~~~~~~~ 90 (170)
T d1e3ja2 18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--DVT-LVVDPAKEEESSIIER 90 (170)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SEE-EECCTTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--cEE-Eeccccccccchhhhh
Confidence 3567789999999999999 67888888888899999999999998888764 32 122 222211 11
Q ss_pred -c--cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 692 -A--KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 692 -~--~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
. ..+.+|+|+-. ++. +..++.+.++|+|+|++++..
T Consensus 91 ~~~~~g~g~D~vid~-----~g~---~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 91 IRSAIGDLPNVTIDC-----SGN---EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHHHSSSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred hhcccccCCceeeec-----CCC---hHHHHHHHHHHhcCCceEEEe
Confidence 1 13578988853 333 466778889999999999854
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00017 Score=66.47 Aligned_cols=97 Identities=28% Similarity=0.347 Sum_probs=71.3
Q ss_pred HHHHHcCCCCCCeEEEecc--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 620 LLIEKARVSKGQEVLEIGC--GWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
.+.+..++++|++||-+|+ |.|..+..+|+..|++|++++-|++..+.+++ .|.. +++ |+++..
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi--~~~~~~~~~~i 89 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKI 89 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---ccc--ccccccHHHHh
Confidence 3455667899999999996 57888999999899999999999987777764 3543 222 333321
Q ss_pred ----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 ----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
....+|+|+.. ++ ...++...++|+|+|+++..
T Consensus 90 ~~~t~~~g~d~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEM-----LA----NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEES-----CH----HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeec-----cc----HHHHHHHHhccCCCCEEEEE
Confidence 34679999974 32 24567778899999999973
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.11 E-value=0.00014 Score=76.56 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CeEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAG-VEVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~~ 33 (842)
|+||||||.||+..|.+|++.| ++|+||||..
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 8999999999999999999998 7999999954
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.10 E-value=0.0012 Score=61.52 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=73.2
Q ss_pred HHHcCCCCCCeEEEeccCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC--------
Q 035870 622 IEKARVSKGQEVLEIGCGW-GTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-------- 691 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-------- 691 (842)
++..++++|++||-+|||. |.++..+++..++ +|+++|.+++-++.|++. |. .... |..+.
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga----~~~~-~~~~~~~~~~i~~ 88 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIAD-LSLDTPLHEQIAA 88 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEEE-TTSSSCHHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc----cEEE-eCCCcCHHHHHHH
Confidence 4667899999999999997 6677777776454 899999999999888765 32 2222 22211
Q ss_pred -ccCCCccEEEEcchhhh-------cChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 -AKANKYDRIISCEMIEA-------VGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 -~~~~~fD~i~s~~~~~~-------~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.....+|+++-.-..+. +........++.+.++++|||++++...
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 12457899986432211 1011135789999999999999998654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.07 E-value=0.001 Score=60.31 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=67.2
Q ss_pred HHHcCCCCCCeEEEeccC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc------cC
Q 035870 622 IEKARVSKGQEVLEIGCG-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------KA 694 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------~~ 694 (842)
+++.++++|++||=+||| .|.++..+++..|++|+++|.+++.++.+++. |.. .++..+-.+.. ..
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS---LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHHS
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc---ccccccchhHHHHHHHhhc
Confidence 456788999999999998 47777888888889999999999988887653 432 33332222111 12
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.+|.|++.. . ...++...++|+|+|++++..
T Consensus 93 g~~~~i~~~~-----~----~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 93 GAHGVLVTAV-----S----NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp SEEEEEECCS-----C----HHHHHHHHTTEEEEEEEEECC
T ss_pred CCcccccccc-----c----chHHHHHHHHhcCCcEEEEEE
Confidence 3334444322 1 345777889999999998843
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00066 Score=62.08 Aligned_cols=102 Identities=22% Similarity=0.202 Sum_probs=72.2
Q ss_pred HHHHHcCCCCCCeEEEeccCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 620 LLIEKARVSKGQEVLEIGCGW-GTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
+.+++.++++|++||=+|||. |.++..+++..|+ +|+++|.+++-++.|++. |.. .++..+-.+..
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~ 89 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARK 89 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---cccccccccccccccc
Confidence 345677899999999999985 5566677777777 899999999999888754 432 22322222111
Q ss_pred ----cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 ----KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ----~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
....+|+|+- .++. +..++...++++|||++++...
T Consensus 90 ~~~~~g~g~Dvvid-----~~G~---~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 90 VEGQLGCKPEVTIE-----CTGA---EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHTSCCSEEEE-----CSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred ccccCCCCceEEEe-----ccCC---chhHHHHHHHhcCCCEEEEEec
Confidence 2357899886 3443 5678889999999999998543
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.06 E-value=0.00016 Score=76.12 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAG-VEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa~ 32 (842)
|+||||||.||+..|.+|++.| ++|+|||+.
T Consensus 19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG 50 (385)
T d1cf3a1 19 DYIIAGGGLTGLTTAARLTENPNISVLVIESG 50 (385)
T ss_dssp EEEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred EEEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 8999999999999999999976 899999994
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.05 E-value=0.00086 Score=64.35 Aligned_cols=135 Identities=10% Similarity=0.016 Sum_probs=93.4
Q ss_pred cccccccCCCcccHHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHh-----cC-------------------
Q 035870 597 TYSCAVFKSEDEDLKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKR-----TG------------------- 652 (842)
Q Consensus 597 ~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~-----~~------------------- 652 (842)
.++.++++.-...|.. ..+...+.......+..++|--||+|.+.+.+|-. +|
T Consensus 21 L~~~~~~~~~~~~Laa---~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~ 97 (249)
T d1o9ga_ 21 LHSAPGYPAFPVRLAT---EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA 97 (249)
T ss_dssp SCCBTTBCCCCHHHHH---HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred cccCCCCCCcchHHHH---HHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHH
Confidence 3344454444444443 22233344445566778999999999999988753 11
Q ss_pred -----------------CEEEEEcCCHHHHHHH---HHHHHHcCCCCCeEEEEccccCCc------cCCCccEEEEcchh
Q 035870 653 -----------------CKYTGITLSEEQLKYA---EMKVKEAGLQDLIRLYLCDYRQLA------KANKYDRIISCEMI 706 (842)
Q Consensus 653 -----------------~~v~gid~s~~~~~~a---~~~~~~~~l~~~v~~~~~d~~~~~------~~~~fD~i~s~~~~ 706 (842)
.++.|.|+++++++.| +++++..|+.+.+++.+.|+.+.. +....++||+|...
T Consensus 98 ~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 98 LLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 2467899999999988 468999999999999999986644 24678999999654
Q ss_pred h-hc------ChhhHHHHHHHHHhccccCcEEEEE
Q 035870 707 E-AV------GHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 707 ~-~~------~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
- -+ ..+.+..++..+.+.+.....++++
T Consensus 178 GERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 178 GERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVT 212 (249)
T ss_dssp GGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccccccchHHHHHHHHHHHHccCCCCcEEEEe
Confidence 2 22 2345778888899999766666664
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.05 E-value=0.0002 Score=66.31 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||||..|.++|.+|+++|++|+|++++..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence 7899999999999999999999999999998654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.05 E-value=0.00028 Score=64.80 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=72.0
Q ss_pred HHHcCCCCCCeEEEeccCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-------c
Q 035870 622 IEKARVSKGQEVLEIGCGW-GTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-------A 692 (842)
Q Consensus 622 ~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-------~ 692 (842)
++..++++|++||=+|||. |.++..+++..|+ +|+++|.+++-++.|++. |.. +++.-+-.+. .
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHh
Confidence 5667899999999999996 8889999998776 799999999988888754 432 2232211111 1
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeec
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFIS 737 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~ 737 (842)
....+|+|+-. ++. +..+++..++++|+|++++....
T Consensus 93 ~g~G~D~vid~-----~g~---~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 93 NGKGVDRVIMA-----GGG---SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp TTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred hccCcceEEEc-----cCC---HHHHHHHHHHHhcCCEEEEEeec
Confidence 23459998763 332 34567778899999999985543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.99 E-value=0.00021 Score=66.30 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYL 35 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~ 35 (842)
++|+|||||.+|+.+|..|++.|.+|+|+|..+..
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence 58999999999999999999999999999987653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0012 Score=59.99 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=70.7
Q ss_pred HHHHcCCCCCCeEEEeccC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCc
Q 035870 621 LIEKARVSKGQEVLEIGCG-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKY 697 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~f 697 (842)
.+++.+++||++||=+||| .|.++..+|+..|++++++|.+++..+.+++. |.. .++..+-.+.. ..+.+
T Consensus 22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCE
T ss_pred HHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHHhcCCC
Confidence 3467789999999999998 47888889988899999999999888777654 432 23322211111 33579
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|.++.. ++. ...++...++|+|+|++++..
T Consensus 95 D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILNT-----VAA---PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEEC-----CSS---CCCHHHHHTTEEEEEEEEECC
T ss_pred ceeeee-----eec---chhHHHHHHHHhcCCEEEEec
Confidence 988864 332 234566778999999999854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.90 E-value=0.0007 Score=62.06 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=71.8
Q ss_pred HHHHHHcCCCCCCeEEEeccCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----
Q 035870 619 SLLIEKARVSKGQEVLEIGCGW-GTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA---- 692 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---- 692 (842)
..+.+.++++||++||=+|||. |.++..+++..++ .|+.+|.+++-++.+++. |.. +++..+-.+..
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~ 90 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIK 90 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHH
Confidence 3456677899999999999984 4566777777555 678889999988888764 432 34433322211
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
.++.||+|+- .++. ...++...++++|+|++++..
T Consensus 91 ~~t~gg~D~vid-----~~G~---~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 91 EITDGGVNFALE-----STGS---PEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHTTSCEEEEEE-----CSCC---HHHHHHHHHTEEEEEEEEECC
T ss_pred HHcCCCCcEEEE-----cCCc---HHHHHHHHhcccCceEEEEEe
Confidence 2467999885 3443 567788899999999998743
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.87 E-value=0.00022 Score=73.93 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+||||||.||+..|.+|+++ ++|+|||+.+
T Consensus 28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 899999999999999999987 9999999843
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.80 E-value=0.00045 Score=64.00 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|+|||||..|++.|..|+++|++|+++++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 78999999999999999999999999999984
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.78 E-value=0.0009 Score=61.18 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=73.2
Q ss_pred HHHHHcCCCCCCeEEEeccCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-Cc----
Q 035870 620 LLIEKARVSKGQEVLEIGCGW-GTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LA---- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~---- 692 (842)
.+++..++++|++||=+|||. |.++..+++..|+ +|+.+|.+++-++.|++. |.. .++...-.+ ..
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~ 91 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVI 91 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhH
Confidence 445667889999999999997 8888888988776 799999999988777764 432 233221111 11
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC-cEEEEEe
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED-GLLVLQF 735 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg-G~~~~~~ 735 (842)
..+.+|+|+- .++. +..+.+..+.|+|| |++++..
T Consensus 92 ~~~~~~G~d~vie-----~~G~---~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 92 TELTAGGVDYSLD-----CAGT---AQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHHTSCBSEEEE-----SSCC---HHHHHHHHHTBCTTTCEEEECC
T ss_pred hhhhcCCCcEEEE-----eccc---chHHHHHHHHhhcCCeEEEecC
Confidence 2467899875 3444 56788899999996 9998844
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.70 E-value=0.003 Score=57.16 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=66.7
Q ss_pred HHHHcCCCCCCeEEEeccCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------
Q 035870 621 LIEKARVSKGQEVLEIGCGW-GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------- 692 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------- 692 (842)
.+...+++|+++||=+|||. |..+..+++..+++|+++|.+++-++.+++. |.. . . .|+.+..
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~---~-~-~~~~~~~~~~~~~~ 89 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD---L-V-VNPLKEDAAKFMKE 89 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS---E-E-ECTTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc---e-e-cccccchhhhhccc
Confidence 34566889999999999985 6666777777889999999999988887653 432 1 1 2222211
Q ss_pred cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 ~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
....+|.++.. ..+ ...+....++|+|+|++++...
T Consensus 90 ~~~~~~~~v~~----~~~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 90 KVGGVHAAVVT----AVS----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHSSEEEEEES----SCC----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ccCCCceEEee----cCC----HHHHHHHHHHhccCCceEeccc
Confidence 11334444432 222 3567788889999999998543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.00084 Score=60.95 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||+|.-|...|..|++.|++|+++.+.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 8999999999999999999999999999998664
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.59 E-value=0.0012 Score=60.28 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=71.2
Q ss_pred HHHHcCCCCCCeEEEecc-C-chHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 621 LIEKARVSKGQEVLEIGC-G-WGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGc-G-~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
.+++.+++++++||=+|| | .|.++..+++..+ .+|+++|.+++-++.+++. |.. .++..+-.+..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~ 91 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRR 91 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHH
Confidence 456778999999999997 3 5666777777755 6999999999988888764 432 23333322211
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
..+.||+|+.. .+. ...++...+.++|+|++++...
T Consensus 92 ~~~~~~~d~vid~-----~g~---~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 92 ITESKGVDAVIDL-----NNS---EKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp HTTTSCEEEEEES-----CCC---HHHHTTGGGGEEEEEEEEECCS
T ss_pred Hhhcccchhhhcc-----ccc---chHHHhhhhhcccCCEEEEecc
Confidence 24579998864 332 4666778899999999988543
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.41 E-value=0.0006 Score=63.12 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=33.0
Q ss_pred CceEEeCCCeeEEEeCCCcEEEEeCCCcEEeCCEEEEccC
Q 035870 229 GCQIRTSSEVCSVLPADKGCTIVCGDGSREFYNSCVMALH 268 (842)
Q Consensus 229 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~A~p 268 (842)
+++++++++|++|..+.. .+++.+|+++.+|.||+|+.
T Consensus 69 ~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G 106 (183)
T d1d7ya1 69 EVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATG 106 (183)
T ss_dssp TCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCC
T ss_pred CeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEE
Confidence 788999999999987665 56788999999999999985
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.27 E-value=0.0014 Score=61.56 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|.|||.|.-||+.|..|+++|++|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 899999999999999999999999999999753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0038 Score=62.93 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCC------CCCeEEEeccCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc
Q 035870 616 RKVSLLIEKARVS------KGQEVLEIGCGWGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY 688 (842)
Q Consensus 616 ~~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~ 688 (842)
..++.+++.+++. .++.|||||+|.|.++..+.+..+ .+|+++|+++...+..+++.. .++++++++|+
T Consensus 24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~ 99 (322)
T d1i4wa_ 24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCT
T ss_pred HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCch
Confidence 3455677776653 467899999999999999988743 489999999999999988753 24799999997
Q ss_pred cCC
Q 035870 689 RQL 691 (842)
Q Consensus 689 ~~~ 691 (842)
..+
T Consensus 100 l~~ 102 (322)
T d1i4wa_ 100 YDW 102 (322)
T ss_dssp TCH
T ss_pred hhc
Confidence 643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.23 E-value=0.002 Score=55.74 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|+|+|--|...|..|.+.|++|+|+|+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 899999999999999999999999999999965
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0024 Score=58.61 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=69.4
Q ss_pred HHHHcCCCCCCeEEEeccC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc------
Q 035870 621 LIEKARVSKGQEVLEIGCG--WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------ 692 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------ 692 (842)
+.+..+++||++||=.|+| .|.++..+|+..|++|++++.|++-.+.+++. |-. +++ |+.+..
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi--~~~~~d~~~~v~ 90 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI--NYREEDLVERLK 90 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEE--ECCCCCHHHHHH
Confidence 3445678999999999655 67899999999999999999999998888754 432 233 333221
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
....+|+|+..- +. +.+....+.|+|+|++++.
T Consensus 91 ~~t~g~g~d~v~d~~-----g~----~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 91 EITGGKKVRVVYDSV-----GR----DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHTTTCCEEEEEECS-----CG----GGHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCeEEEEeCc-----cH----HHHHHHHHHHhcCCeeeec
Confidence 246789888643 32 2456778899999998773
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.17 E-value=0.0023 Score=57.30 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=30.7
Q ss_pred cEEEE--CCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 2 RVAVI--GAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 2 dV~II--GaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
.|+|| |||..|+.+|-.|++.|.+|+|+|+.++++
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~ 77 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN 77 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 45555 999999999999999999999999977654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0035 Score=56.98 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=68.7
Q ss_pred HHHHcCCCCCCeEEEecc-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc----cC
Q 035870 621 LIEKARVSKGQEVLEIGC-G-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----KA 694 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----~~ 694 (842)
.++..+++||++||=.|. | .|.++..+|+..|++|++++.+++..+.+++ .|.+ .+ .|+.+.. ..
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~--i~~~~~~~~~~~~ 89 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EA--ATYAEVPERAKAW 89 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EE--EEGGGHHHHHHHT
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---ee--eehhhhhhhhhcc
Confidence 456678899999999984 4 5788899999889999999999987777764 3543 11 2444432 34
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.+|+|+.. .++ .+.+..+.|+|+|++++.
T Consensus 90 ~g~D~v~d~-----~G~-----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 90 GGLDLVLEV-----RGK-----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp TSEEEEEEC-----SCT-----THHHHHTTEEEEEEEEEC
T ss_pred ccccccccc-----cch-----hHHHHHHHHhcCCcEEEE
Confidence 679998863 232 245667899999999873
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.06 E-value=0.0027 Score=57.82 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHHHHcCCCCCCeEEEecc--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-c--c
Q 035870 619 SLLIEKARVSKGQEVLEIGC--GWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-A--K 693 (842)
Q Consensus 619 ~~l~~~l~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~--~ 693 (842)
..+.+.-..++|++||=-|+ |-|.+++++|+..|++|+++.-|++-.+.+++. |...-+. ...+..+. . .
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~~~ 95 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRPLD 95 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEE-CC---------CC
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHHhh
Confidence 44555666788999999984 567999999999999999999998888877653 4331111 11111111 1 3
Q ss_pred CCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 694 ANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.+.+|+|+-+ ++. ..+.+..++|+|||+++....
T Consensus 96 ~~gvD~vid~-----vgg----~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 96 KQRWAAAVDP-----VGG----RTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp SCCEEEEEEC-----STT----TTHHHHHHTEEEEEEEEECSC
T ss_pred ccCcCEEEEc-----CCc----hhHHHHHHHhCCCceEEEeec
Confidence 4689988863 443 346678889999999998443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.04 E-value=0.017 Score=52.68 Aligned_cols=99 Identities=25% Similarity=0.377 Sum_probs=71.5
Q ss_pred HHHHHcCCCCCCeEEEeccC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 620 LLIEKARVSKGQEVLEIGCG--WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
.+.+..++++|++||=.|++ .|..+..+|+..|++|++++-|++..+.+++. |.. +++.-+-.+..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~~~~~ 92 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEALK 92 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhcccccccHHHHHHH
Confidence 44566788999999988874 57888999999999999999999877766654 432 23332222211
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+.+|+|+- .++. +.+++..++|+|+|++++.
T Consensus 93 ~~~~~Gvd~v~D-----~vG~----~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 93 KASPDGYDCYFD-----NVGG----EFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHCTTCEEEEEE-----SSCH----HHHHHHGGGEEEEEEEEEC
T ss_pred HhhcCCCceeEE-----ecCc----hhhhhhhhhccCCCeEEee
Confidence 3457999886 3443 4678899999999999973
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.03 E-value=0.0054 Score=55.80 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred HHHHHcCCCCCCeEEEeccCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCC-----c
Q 035870 620 LLIEKARVSKGQEVLEIGCGW-GTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQL-----A 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-----~ 692 (842)
.+++..++++|++||=+|||. |.++..+++..| .+|+++|.+++-++.|++. |.. .++.-.-.+. .
T Consensus 18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i~~~~~d~~~~~~~ 90 (174)
T d1p0fa2 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVI 90 (174)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc---EEEcCCCchhHHHHHH
Confidence 445667899999999999985 455566777656 5899999999999888754 432 3332211111 0
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHh-ccccCcEEEEEeecC
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCES-LLAEDGLLVLQFISI 738 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~-~LkpgG~~~~~~~~~ 738 (842)
..+.+|.|+-. ++. ...+.+... +++++|++++.....
T Consensus 91 ~~~~~~G~d~vid~-----~g~---~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 91 CEKTNGGVDYAVEC-----AGR---IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp HHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred HHhcCCCCcEEEEc-----CCC---chHHHHHHHHHHHhcCceEEEEEec
Confidence 23578998853 333 344444444 445679988855433
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.98 E-value=0.0028 Score=58.40 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCCeEEEec--cCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----
Q 035870 620 LLIEKARVSKGQEVLEIG--CGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA----- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----- 692 (842)
.+.+..++++|++||=.| .|.|.++..+|+..|+++++++-+++..+.+++ .|.. .++..+-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILE 88 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHHHHHH
Confidence 344566789999999987 347889999998899999999999888777764 3532 22322211111
Q ss_pred --cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 --KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 --~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
....||+|+..- +. ..++.+.++|+|+|+++..
T Consensus 89 ~t~~~g~d~v~d~~-----g~----~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSL-----AG----EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEECC-----CT----HHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEecc-----cc----hHHHHHHHHhcCCCEEEEE
Confidence 236799999743 32 3466678999999998873
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.96 E-value=0.0063 Score=55.43 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=67.4
Q ss_pred HHHHHcCCCCCCeEEEeccCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ccccCC-----
Q 035870 620 LLIEKARVSKGQEVLEIGCGW-GTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL-CDYRQL----- 691 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~-~d~~~~----- 691 (842)
.+.+..++++|++||=+|||. |.++..+++..| .+|+++|.+++-++.|++. |-. .++. .|..+.
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~---~~in~~~~~~~~~~~~ 92 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT---ECISPKDSTKPISEVL 92 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc---EEECccccchHHHHHH
Confidence 345667789999999999984 566677777766 5899999999999999876 322 2222 111111
Q ss_pred --ccCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEee
Q 035870 692 --AKANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFI 736 (842)
Q Consensus 692 --~~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~ 736 (842)
.....+|.|+-. .+. ...+...+..+++++|++++...
T Consensus 93 ~~~~g~G~d~vi~~-----~g~--~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 93 SEMTGNNVGYTFEV-----IGH--LETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp HHHHTSCCCEEEEC-----SCC--HHHHHHHHTTSCTTTCEEEECSC
T ss_pred HHhccccceEEEEe-----CCc--hHHHHHHHHHhhcCCeEEEEEEc
Confidence 133578988753 332 23333445555566799888543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.88 E-value=0.0036 Score=55.45 Aligned_cols=31 Identities=23% Similarity=0.559 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
+|+|||||.+|+.|+..+...|.+|+++|.+
T Consensus 34 ~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~ 64 (168)
T d1pjca1 34 KVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 64 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence 6999999999999999999999999999974
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.84 E-value=0.025 Score=50.98 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=65.5
Q ss_pred CCCCCCeEEEeccCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc------cCCCc
Q 035870 626 RVSKGQEVLEIGCGW-GTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------KANKY 697 (842)
Q Consensus 626 ~~~~~~~vLDiGcG~-G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------~~~~f 697 (842)
.++||++||=+|||. |.++..+++..+ .+|+++|.+++.++.+++. |. .+++..+-.... ....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCc
Confidence 468999999999985 455567777645 5899999999888877754 32 233432211111 23568
Q ss_pred cEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 698 DRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 698 D~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
|.|+-. ++. ...++...+.|+++|++++..
T Consensus 102 d~vid~-----~g~---~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 102 NVAMDF-----VGS---QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEEES-----SCC---HHHHHHGGGGEEEEEEEEECC
T ss_pred eEEEEe-----cCc---chHHHHHHHHHhCCCEEEEEe
Confidence 988853 443 456788899999999999854
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0036 Score=57.96 Aligned_cols=33 Identities=39% Similarity=0.532 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|||||.-|-+-|+.++++|++|+++|.++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 689999999999999999999999999999754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.53 E-value=0.0049 Score=53.35 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+++|||+|-.|-..|..|.+.|++|+|+|.+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 789999999999999999999999999999864
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.50 E-value=0.0042 Score=57.19 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|||||.-|.+-|..++.+|++|+++|.++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 589999999999999999999999999999854
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.49 E-value=0.006 Score=54.83 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
+|+|||||.+|+.||......|.+|+++|.+.
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.44 E-value=0.0082 Score=55.37 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=69.4
Q ss_pred HHHHHcCCCCCCeEEEe--ccC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---ccCCc-
Q 035870 620 LLIEKARVSKGQEVLEI--GCG-WGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD---YRQLA- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDi--GcG-~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d---~~~~~- 692 (842)
.+.+...++||++||=+ |.| .|..++.+|+..|++|+++.-+++..+...+.+++.|.. .++.-| ..+..
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~ 95 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP 95 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHH
Confidence 34455678999988887 323 577888999999999999876666666666667777754 233322 22211
Q ss_pred --------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 --------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 --------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+.+|+|+- .++. ..+....++|+|+|+++..
T Consensus 96 ~v~~~~~~~g~~vdvv~D-----~vg~----~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 96 TIKEWIKQSGGEAKLALN-----CVGG----KSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHHTCCEEEEEE-----SSCH----HHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHHhhccCCceEEEE-----CCCc----chhhhhhhhhcCCcEEEEE
Confidence 1356888885 3554 3456677899999999873
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.41 E-value=0.0061 Score=53.93 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
++|+|||||-+|+=||..|.+.|. +|+|+++++
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 579999999999999999999986 588987754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.19 E-value=0.087 Score=47.34 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=69.1
Q ss_pred HHHHHcCCCCCCeEEEeccC-chHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-ccCCc----
Q 035870 620 LLIEKARVSKGQEVLEIGCG-WGTLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCD-YRQLA---- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d-~~~~~---- 692 (842)
.+.+..+++||++||=+||| .|.++..+++..+ ..|+++|.+++-++.+++. |.. +++..+ -.+..
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~ 91 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVL 91 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHH
Confidence 34566789999999999987 4566777777766 5899999999888888764 432 233221 11110
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
..+.+|+|+-. ++. ...++....++++||.+++.
T Consensus 92 ~~~~~~g~D~vid~-----~G~---~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 92 IEMTDGGVDYSFEC-----IGN---VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEE
T ss_pred HHHcCCCCcEeeec-----CCC---HHHHHHHHHhhcCCceeEEE
Confidence 23579999863 443 46778889999999887654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.04 E-value=0.0096 Score=53.51 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|.|||.|.-|.+-|..|+++|++|++++++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 89999999999999999999999999999874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.02 E-value=0.0076 Score=55.09 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa 31 (842)
|+|+|||||.-|.+.|..|++.|++|+++-+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence 8999999999999999999999999999844
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.83 E-value=0.012 Score=52.03 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=69.6
Q ss_pred CCCeEEEeccCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-cCCCccEEEEcchh
Q 035870 629 KGQEVLEIGCGW-GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-KANKYDRIISCEMI 706 (842)
Q Consensus 629 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~fD~i~s~~~~ 706 (842)
++.+|+=||+|. |..++..|...|++|+.+|.+++.+++.+..... +++....+-..+. .-...|+||..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence 457999999995 7777888888999999999999999888776532 5666666654444 22468999986543
Q ss_pred hhcChhhHHHHHHHHHhccccCcEEE
Q 035870 707 EAVGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
. +..-+.-+-+++-+.+|||..++
T Consensus 106 p--G~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 P--GRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp T--TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred C--CcccCeeecHHHHhhcCCCcEEE
Confidence 2 22112333467888999998776
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0066 Score=62.18 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=28.5
Q ss_pred hcCCCCeEEeccccCC---CCCchhHhHHHHHHHHhcC
Q 035870 384 IQGKRGIWFCGAYQGY---GFHEDGLKAGMTAAHGVLG 418 (842)
Q Consensus 384 ~~~~~~l~~aG~~~g~---G~~e~A~~SG~~aA~~Il~ 418 (842)
.++.+||||||+++.. |++|+|+.||++||++|+.
T Consensus 408 ~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~ 445 (449)
T d2dw4a2 408 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD 445 (449)
T ss_dssp --CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHH
Confidence 4677899999998743 5559999999999999975
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.77 E-value=0.027 Score=54.36 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVK 673 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~ 673 (842)
..++++++... .+|+.|||.-||+|..+..+.+. +.+.+|+|++++.++.|++|+.
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~-~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence 34556666654 78999999999999999766654 9999999999999999999985
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.69 E-value=0.016 Score=52.07 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=67.9
Q ss_pred HHHHcCCCCCCeEEEec--cCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc--cCCc--cC
Q 035870 621 LIEKARVSKGQEVLEIG--CGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDY--RQLA--KA 694 (842)
Q Consensus 621 l~~~l~~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~--~~~~--~~ 694 (842)
+.+.-..+++.+||=-| .|-|.++.++|+..|++|+++.-|++..+.+++. |.. .+ +...|. .... ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-EV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-EE-EEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-ce-EeccchhchhhhcccC
Confidence 44444455677888777 4578999999999999999999998887777654 432 11 111111 1111 33
Q ss_pred CCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~ 735 (842)
+.+|+|+- .++. ..+.+..+.|+|+|++++..
T Consensus 89 ~gvd~vid-----~vgg----~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 89 QQWQGAVD-----PVGG----KQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp CCEEEEEE-----SCCT----HHHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEe-----cCcH----HHHHHHHHHhccCceEEEee
Confidence 67898875 4554 46677899999999998843
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.66 E-value=0.011 Score=54.98 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|||.|.-||..|..|+ .|++|+.+|-+.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP 32 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence 89999999999999999887 599999999754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.01 Score=52.28 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEe
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYE 30 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlE 30 (842)
|+|+|||||..|+.-|..|.+.|.+|+|+-
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVva 43 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVS 43 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 689999999999999999999999999993
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.33 E-value=0.011 Score=54.35 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
++|+|||||-=|.+.|..|++.|++|+++.++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 36999999999999999999999999999763
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.27 E-value=0.018 Score=47.80 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa 31 (842)
|+|+|||+|-.|..-|..|.+.|.+|+|+..
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~ 43 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 6899999999999999999999999999854
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.21 E-value=0.018 Score=47.32 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|||+|.||+-.|..|++.+.+|+++-+++
T Consensus 33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 799999999999999999999988887776544
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.20 E-value=0.1 Score=53.16 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhc--------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCe
Q 035870 610 LKAAQMRKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRT--------GCKYTGITLSEEQLKYAEMKVKEAGLQDLI 681 (842)
Q Consensus 610 l~~aq~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gid~s~~~~~~a~~~~~~~~l~~~v 681 (842)
+.++--+.+..+.+.++.++..+|+|+|+|.|.++..+.+.. ..+++.+|.|+...+.-++++... .++
T Consensus 60 Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~---~~i 136 (365)
T d1zkda1 60 FGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNI 136 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSE
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc---ccc
Confidence 344444445556666766666789999999999998776541 247999999998776666665432 245
Q ss_pred EEEEccccCCccCCCccEEEEcchhhhc
Q 035870 682 RLYLCDYRQLAKANKYDRIISCEMIEAV 709 (842)
Q Consensus 682 ~~~~~d~~~~~~~~~fD~i~s~~~~~~~ 709 (842)
+++ .|..+++ ...-+|+||+.+..+
T Consensus 137 ~w~-~~~~~~~--~~~g~iiaNE~fDAl 161 (365)
T d1zkda1 137 HWH-DSFEDVP--EGPAVILANEYFDVL 161 (365)
T ss_dssp EEE-SSGGGSC--CSSEEEEEESSGGGS
T ss_pred eec-cChhhcc--cCCeEEEecccCccc
Confidence 543 4555555 233678888877555
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.12 E-value=0.1 Score=46.29 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=59.0
Q ss_pred CeEEEeccCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 631 QEVLEIGCGW--GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 631 ~~vLDiGcG~--G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
++|.=||+|. +.++..+.+. |.+|++.|.+++.++.++++ ++ +.....+...+ ...|+|+..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~~~---~~~DiIila----- 64 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLSLL---QTAKIIFLC----- 64 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG---TTCSEEEEC-----
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHh----hc---cceeeeecccc---ccccccccc-----
Confidence 4688899983 3455666655 89999999999887776653 32 21222233222 467998863
Q ss_pred cChhhHHHHHHHHHhccccCcEEEE
Q 035870 709 VGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
++.....+.++++...|+|+-.++-
T Consensus 65 vp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 65 TPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp SCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred CcHhhhhhhhhhhhhhcccccceee
Confidence 4445578899999999988886654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.02 E-value=0.024 Score=49.96 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=30.5
Q ss_pred CcEEEEC-CChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIG-AGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIG-aGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+||| .|.-|-+-|..|+++|++|++++++.
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 5899999 69999999999999999999998754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.81 E-value=0.21 Score=44.55 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=62.8
Q ss_pred HHHHHcCCCCCCeEEEeccCchHH-HHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccC-Cc----
Q 035870 620 LLIEKARVSKGQEVLEIGCGWGTL-AIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQ-LA---- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G~~-~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~---- 692 (842)
.+.+..++++|++||=+|||.++. +..+++. .+.+|+++|.+++-++.+++. |.. +++..+-.+ ..
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GAd---~~in~~~~~~~~~~~~ 91 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT---DFVNPNDHSEPISQVL 91 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CCc---EEEcCCCcchhHHHHH
Confidence 345667899999999999998544 4444555 456899999999988887754 532 334322111 10
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
..+.+|.|+- .++. ...+.....+++++|..++
T Consensus 92 ~~~~~~G~d~vid-----~~G~---~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 92 SKMTNGGVDFSLE-----CVGN---VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHHTSCBSEEEE-----CSCC---HHHHHHHHHTBCTTTCEEE
T ss_pred HhhccCCcceeee-----ecCC---HHHHHHHHHHhhCCCccee
Confidence 2357899875 3443 4556666677666644443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.75 E-value=0.026 Score=51.98 Aligned_cols=32 Identities=41% Similarity=0.503 Sum_probs=29.8
Q ss_pred CcEEEE-CCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVI-GAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~II-GaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|+|| |+|--|.+.|..|+++|++|+|..++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~ 33 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 899999 67999999999999999999999774
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.65 E-value=0.17 Score=45.32 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=64.6
Q ss_pred HHHHHcCCCCCCeEEEeccCch-HHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ccccCCc----
Q 035870 620 LLIEKARVSKGQEVLEIGCGWG-TLAIEIVKRTG-CKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL-CDYRQLA---- 692 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGcG~G-~~~~~la~~~~-~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~-~d~~~~~---- 692 (842)
.+.+..+++||++||=+|||-+ ..+..+++..+ .+|+++|.+++-.+.+++. |.. +++. .+..+..
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~~~~ 91 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVL 91 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe---eEEecCCchhHHHHHH
Confidence 3456678999999999999744 45566666655 6999999999998888765 422 2222 1222211
Q ss_pred ---cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccC-cEEEE
Q 035870 693 ---KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAED-GLLVL 733 (842)
Q Consensus 693 ---~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~Lkpg-G~~~~ 733 (842)
..+.+|+|+-. ++. ...++.....++++ |.+++
T Consensus 92 ~~~~~~G~D~vid~-----~G~---~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 92 TEMSNGGVDFSFEV-----IGR---LDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp HHHTTSCBSEEEEC-----SCC---HHHHHHHHHHBCTTTCEEEE
T ss_pred HHHhcCCCCEEEec-----CCc---hhHHHHHHHHHhcCCcceEE
Confidence 34679998864 333 45566666777776 55555
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.57 E-value=0.037 Score=55.34 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~ 675 (842)
..+++++... -++|+.|||.-||+|..+..+.+. |.+.+|+|+|++.++.|++|+.+.
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 3445666655 468999999999999998876665 999999999999999999987543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.50 E-value=0.068 Score=52.15 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc
Q 035870 616 RKVSLLIEKARVSKGQEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEA 675 (842)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~ 675 (842)
..+++++... -.+|+.|||.-||+|..+..+.+. |.+.+|+|++++..+.|++|+...
T Consensus 195 ~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3455666665 478999999999999998776665 999999999999999999999864
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.25 Score=47.37 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=60.5
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
+++.+|=.|++.| .++..++++ |++|+.++.+++.++.+.+.+++.+...++.++.+|+.+.. .-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678999998876 445555565 89999999999999999999988877668899999987643 23
Q ss_pred CCccEEEEcch
Q 035870 695 NKYDRIISCEM 705 (842)
Q Consensus 695 ~~fD~i~s~~~ 705 (842)
+..|.+|.+..
T Consensus 88 g~iD~lVnnAg 98 (257)
T d1xg5a_ 88 SGVDICINNAG 98 (257)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEeccc
Confidence 68999998753
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.036 Score=46.89 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||+|-+.+-.|..|++...+|+++-+++.
T Consensus 28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~ 61 (126)
T d1trba2 28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 61 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence 6899999999999999999999999999987654
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.041 Score=46.58 Aligned_cols=34 Identities=44% Similarity=0.390 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||+|-+.+-.|.+|++...+|+|+-+.+.
T Consensus 31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~ 64 (126)
T d1fl2a2 31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 64 (126)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred ceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence 7899999999999999999999899999988664
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.13 Score=46.11 Aligned_cols=90 Identities=17% Similarity=0.301 Sum_probs=62.9
Q ss_pred CCCCCeEEEec--cCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccE
Q 035870 627 VSKGQEVLEIG--CGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDR 699 (842)
Q Consensus 627 ~~~~~~vLDiG--cG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~ 699 (842)
.+++.+||=.| +|.|.+++++|+..|++|+++.-|++..+.+++. |. -.++ |+.+.. ....+|.
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi--~~~~~~~~~~l~~~~~~~ 99 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVL--PRDEFAESRPLEKQVWAG 99 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEE--EGGGSSSCCSSCCCCEEE
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---cccc--ccccHHHHHHHHhhcCCe
Confidence 34455787665 3477899999999999999999999988877654 32 1233 333222 3356787
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
|+ ..++. ..+.+.-+.|+++|++++.
T Consensus 100 vv-----D~Vgg----~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 100 AI-----DTVGD----KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp EE-----ESSCH----HHHHHHHHTEEEEEEEEEC
T ss_pred eE-----EEcch----HHHHHHHHHhccccceEee
Confidence 75 34554 4577888999999999984
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=92.89 E-value=0.041 Score=48.92 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|.|||-|.-|...|..|.++|++|.+++++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~ 32 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN 32 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence 79999999999999999999999999999874
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.84 E-value=0.094 Score=47.74 Aligned_cols=98 Identities=24% Similarity=0.344 Sum_probs=65.2
Q ss_pred HHHHHcCCCCC--CeEEEec--cCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 620 LLIEKARVSKG--QEVLEIG--CGWGTLAIEIVKRTGC-KYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 620 ~l~~~l~~~~~--~~vLDiG--cG~G~~~~~la~~~~~-~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
.+.+..++++| ++||=.| .|.|.+++++|+..|+ .|++++-+++......+ ..|-. .++ |+.+-.
T Consensus 19 ~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~gad---~vi--~~~~~~~~ 90 (187)
T d1vj1a2 19 GVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGFD---AAV--NYKTGNVA 90 (187)
T ss_dssp HHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCCS---EEE--ETTSSCHH
T ss_pred HHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccce---EEe--eccchhHH
Confidence 34455667776 7899877 5689999999998776 57777878765554432 33432 222 332211
Q ss_pred ------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 693 ------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 693 ------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
.++.+|+|+- .++. ..++...+.|+|+|+++..
T Consensus 91 ~~~~~~~~~GvDvv~D-----~vGg----~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 91 EQLREACPGGVDVYFD-----NVGG----DISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHHHCTTCEEEEEE-----SSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHhccCceEEEe-----cCCc----hhHHHHhhhccccccEEEe
Confidence 2356999985 4443 4577889999999999873
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=92.69 E-value=0.56 Score=45.65 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=80.8
Q ss_pred CeEEEeccCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEccccCCc----cC-----CCccE
Q 035870 631 QEVLEIGCGWGTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ--DLIRLYLCDYRQLA----KA-----NKYDR 699 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~--~~v~~~~~d~~~~~----~~-----~~fD~ 699 (842)
..|+.+|||.=.-+..+....+.++.=+|. +++++.-++.+.+.+.. .+.+++..|+++-- .. +.--+
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 467779999888776664335678888885 88888888888877653 35677888876521 11 23346
Q ss_pred EEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC
Q 035870 700 IISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI 738 (842)
Q Consensus 700 i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~ 738 (842)
+++-+++.+++.+....+++.+.+...||..+++.....
T Consensus 170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~ 208 (297)
T d2uyoa1 170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 208 (297)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 777788999999999999999999999999999865443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=92.68 E-value=0.041 Score=47.82 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~~ 33 (842)
|+|+|||+|--|.++|+.|+..|. ++.+++...
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 689999999999999999999874 899998643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.05 Score=48.77 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|+|+|||=++-++++.|.+.|.+|+|+-|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 68999999999999999999999999999764
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.033 Score=49.58 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=30.5
Q ss_pred hhhcCceEEeCCCeeEEEeCCCcEEEEeCCCc-EEeCCEEEEccC
Q 035870 225 LESWGCQIRTSSEVCSVLPADKGCTIVCGDGS-REFYNSCVMALH 268 (842)
Q Consensus 225 l~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~A~p 268 (842)
++..|+++..++.|.+|. ++++.+...+.+ ++.||.||+|+.
T Consensus 118 ~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 118 LLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG 160 (162)
T ss_dssp HHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred HhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence 344488999999999985 556655543322 489999999985
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=92.48 E-value=0.06 Score=46.56 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~~ 33 (842)
|||+|||||--|.+.|+.|+..|. ++.++|...
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 799999999999999999999874 899998644
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.37 E-value=0.26 Score=43.77 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=57.1
Q ss_pred eEEEeccCc-h-HHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCccCCCccEEEEcchhhh
Q 035870 632 EVLEIGCGW-G-TLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLAKANKYDRIISCEMIEA 708 (842)
Q Consensus 632 ~vLDiGcG~-G-~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~fD~i~s~~~~~~ 708 (842)
+|+=||||. | .++..+.+. +..+|+++|.+++.++.+++. +. +.....+.... .....|+|+..-
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~-~~~~~dlIila~---- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-EDFSPDFVMLSS---- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG-GGTCCSEEEECS----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh-hccccccccccC----
Confidence 588899985 3 345555554 346899999999999888765 32 22222222222 224679998753
Q ss_pred cChhhHHHHHHHHHhccccCcEEE
Q 035870 709 VGHEFMEEFFGCCESLLAEDGLLV 732 (842)
Q Consensus 709 ~~~~~~~~~~~~~~~~LkpgG~~~ 732 (842)
+.+....++.++...++++-.+.
T Consensus 71 -p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 -PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp -CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred -Cchhhhhhhhhhhcccccccccc
Confidence 33446788889999998875554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.35 E-value=0.049 Score=47.29 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
|+|.|||+|--|.++|+.|...|. ++.+++..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 799999999999999999998874 78888753
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.14 E-value=0.075 Score=45.03 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDYLG 36 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~~G 36 (842)
|+|+|||+|-+.+-.|.+|++.--+|+|+-+++.+-
T Consensus 35 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r 70 (130)
T d1vdca2 35 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR 70 (130)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred CEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence 689999999999999999999989999998877643
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.89 E-value=0.074 Score=46.03 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=28.6
Q ss_pred CcEEEECC-ChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGA-GISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGa-GiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
|||.|||| |-.|-++|+.|+..|. ++.+++..
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~ 35 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE 35 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence 79999996 9999999999999985 88888763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.83 E-value=0.36 Score=40.67 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=56.8
Q ss_pred CeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEE
Q 035870 631 QEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIIS 702 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s 702 (842)
++|+=+|+ |.++..+++. .|.+|+.+|.+++.++.+++.. .+.++.+|..+.. .-...|.+++
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 45666665 6666666654 5889999999999888776542 4678999987654 2357899888
Q ss_pred cchhhhcChhhHHHHHHHHHhccccCcE
Q 035870 703 CEMIEAVGHEFMEEFFGCCESLLAEDGL 730 (842)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 730 (842)
.- +++...-+...+.+.+.+.-.
T Consensus 72 ~t-----~~d~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 72 VT-----GKEEVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp CC-----SCHHHHHHHHHHHHHTTCCCE
T ss_pred cC-----CcHHHHHHHHHHHHHcCCceE
Confidence 42 222233344455566777633
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=91.76 E-value=0.066 Score=46.28 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~ 32 (842)
|+|.|||+|--|.++|+.|+..+. ++.+++..
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~ 34 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence 689999999999999999998875 88888863
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.72 E-value=0.43 Score=45.57 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+++|=-|++.| ..+..++++ |++|..+|.+++.++.+.+.+...+...++..+.+|+.+.. .-
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 4678888888777 456677776 99999999999999988888776665557899999987643 12
Q ss_pred CCccEEEEcc
Q 035870 695 NKYDRIISCE 704 (842)
Q Consensus 695 ~~fD~i~s~~ 704 (842)
++.|.+|.+.
T Consensus 82 G~iDiLVnnA 91 (258)
T d1iy8a_ 82 GRIDGFFNNA 91 (258)
T ss_dssp SCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 6899999864
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.64 E-value=0.066 Score=46.21 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
|||.|||+|-.|-+.|+.|+..|. ++.+++.+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence 899999999999999999998875 68888753
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=91.51 E-value=0.071 Score=46.76 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
++|+|||+|-.|.++|+.|+..|+ ++.+++.+.
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 589999999999999999998885 899998643
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.22 E-value=0.082 Score=46.86 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|.|||-|.-|..-|.+|.++|++|.+++++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~ 33 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV 33 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence 58999999999999999999999999999874
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.17 E-value=0.089 Score=46.03 Aligned_cols=32 Identities=38% Similarity=0.383 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|.|||.|.-|.+.|..|+++|++|++..+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~ 32 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEG 32 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence 79999999999999999999999999988763
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.16 E-value=0.083 Score=47.67 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa 31 (842)
|+|.|||-|.-|..-|.+|.++|++|.++++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr 32 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNR 32 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEEC
Confidence 7899999999999999999999999999976
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.62 E-value=0.099 Score=46.55 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa 31 (842)
|+|+|||+|=++-++++.|.+.|. +|+|+-|
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR 49 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR 49 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence 589999999999999999999997 7899866
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.16 Score=41.59 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=30.9
Q ss_pred CcEEEECCC-----------hHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAG-----------ISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaG-----------iaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||+| +++..|+..|++.|++++++--++.
T Consensus 5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 689999999 6899999999999999999987664
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.45 E-value=0.1 Score=44.88 Aligned_cols=32 Identities=34% Similarity=0.660 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
|||.|||||--|.++|+.|+..|. ++.+++..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 34 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 799999999999999999998874 78888854
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.39 E-value=0.82 Score=43.49 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=57.0
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc------------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA------------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------------~ 693 (842)
.|+++|=.|+..| ..+..++++ |++|+.++.+++.++.+.+.+...+. ++.++.+|+.+.. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 5789999998766 455566666 89999999999999999888887763 6888999986542 1
Q ss_pred CCCccEEEEcc
Q 035870 694 ANKYDRIISCE 704 (842)
Q Consensus 694 ~~~fD~i~s~~ 704 (842)
.+..|+++.+.
T Consensus 82 ~g~idilinna 92 (258)
T d1ae1a_ 82 DGKLNILVNNA 92 (258)
T ss_dssp TSCCCEEEECC
T ss_pred CCCcEEEeccc
Confidence 25788888764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=90.24 E-value=0.15 Score=43.89 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~~ 33 (842)
++|.|||+|-.|.++|+.|...|. ++.+++...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 589999999999999999999986 899999644
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.12 E-value=0.11 Score=45.11 Aligned_cols=32 Identities=41% Similarity=0.727 Sum_probs=28.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
++|.|||||-.|.++|+.|+..|. ++.+++..
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 479999999999999999999875 78899863
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.01 E-value=0.11 Score=46.22 Aligned_cols=31 Identities=42% Similarity=0.455 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
+|+|+|+|..|+.++..++..|.+|+++|.+
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEEcccccchhhHhhHhhhcccccccchH
Confidence 6899999999999999999999999999874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.51 E-value=0.14 Score=45.51 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
+|+|+|+|..|+.++..++..|.+|++++.++
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred EEEEECCCCcchhHHHHhhhccccccccccch
Confidence 68999999999999998888899999998755
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.27 E-value=0.18 Score=44.92 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=59.7
Q ss_pred CCCeEEEeccCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE----------ccccCCc-----
Q 035870 629 KGQEVLEIGCGW-GTLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYL----------CDYRQLA----- 692 (842)
Q Consensus 629 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~----------~d~~~~~----- 692 (842)
++.+||=||+|. |..+...|...|++|+.+|++++.++..++.... .+++.. +...++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-----~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-----eEEEeccccccccccccchhhcCHHHHH
Confidence 456999999996 6666777777899999999999887777754211 111100 0011110
Q ss_pred --------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 693 --------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 693 --------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
.-...|+||..-.+.--. -+.-+-+++-+.+|||..++=
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~--aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKP--APVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSC--CCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcc--cceeehHHHHHhcCCCcEEEE
Confidence 013579999865443211 122334578888999987763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.14 Score=45.66 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~ 32 (842)
.|+|+|+|..|+.++..+...|. +|++.|.+
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred EEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence 68999999999999999999998 79998863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.26 E-value=0.15 Score=45.20 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
+|+|+|+|..|+.++..++..|.+|++++.+
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 6999999999999999999999999999763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.13 E-value=0.87 Score=43.35 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=57.0
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+.+|=-|.+.| ..+..++++ |++|+.+|.+++.++.+.+.++..+. ++..+.+|+.+.. .-
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4778888887766 355666666 89999999999999999988887653 6899999987643 22
Q ss_pred CCccEEEEcc
Q 035870 695 NKYDRIISCE 704 (842)
Q Consensus 695 ~~fD~i~s~~ 704 (842)
+..|.+|.+.
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 6899999763
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.19 Score=37.82 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=41.7
Q ss_pred HHHHHcCCCCCCeEEEecc--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 035870 620 LLIEKARVSKGQEVLEIGC--GWGTLAIEIVKRTGCKYTGITLSEEQLKYAEM 670 (842)
Q Consensus 620 ~l~~~l~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gid~s~~~~~~a~~ 670 (842)
.+.+....+++++||=.|. |.|.+++.+++..|++|+++.-|++..+.+++
T Consensus 22 ~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 22 ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp HHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred HHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 3444555678999998875 46789999999999999999999999888875
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.98 E-value=1.3 Score=42.07 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=54.7
Q ss_pred CCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cCC
Q 035870 630 GQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KAN 695 (842)
Q Consensus 630 ~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~~ 695 (842)
|+.+|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+++.+. ++.++.+|+.+.. .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 455566776655 345555665 89999999999999999888887764 6899999987653 236
Q ss_pred CccEEEEcc
Q 035870 696 KYDRIISCE 704 (842)
Q Consensus 696 ~fD~i~s~~ 704 (842)
+.|.+|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 889999874
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=88.96 E-value=0.19 Score=43.96 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
++|+|||+|--|-++|+.|...|. ++.+++..
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 489999999999999999999987 79999874
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.96 Score=42.55 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=59.3
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+.+|=-|++.| .++..++++ |++|..+|.+++.++...+.+...+ .++..+.+|+.+.. ..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 4778888888877 566666666 9999999999999999988888765 47999999987753 24
Q ss_pred CCccEEEEcch
Q 035870 695 NKYDRIISCEM 705 (842)
Q Consensus 695 ~~fD~i~s~~~ 705 (842)
+..|.++.+..
T Consensus 83 g~idilinnag 93 (244)
T d1yb1a_ 83 GDVSILVNNAG 93 (244)
T ss_dssp CCCSEEEECCC
T ss_pred CCCceeEeecc
Confidence 67899998754
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=88.87 E-value=0.12 Score=48.67 Aligned_cols=32 Identities=34% Similarity=0.607 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|+|||+|-||.-+|+.|++.+.+++++=+.
T Consensus 33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~ 64 (235)
T d1w4xa2 33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 64 (235)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence 78999999999999999999999988888554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.28 E-value=0.22 Score=44.27 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa 31 (842)
|+|.|||.|.-|-|-|..|.+.|+ +|..+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~ 34 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI 34 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 459999999999999999999986 5666665
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.57 Score=44.55 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+.+|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+.+..-..++.++.+|+.+.. .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 4678888887765 344555555 99999999999998888877765433347899999987743 12
Q ss_pred CCccEEEEcchhh
Q 035870 695 NKYDRIISCEMIE 707 (842)
Q Consensus 695 ~~fD~i~s~~~~~ 707 (842)
++.|.+|.+..+.
T Consensus 81 G~iDilVnnAg~~ 93 (254)
T d2gdza1 81 GRLDILVNNAGVN 93 (254)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCcCeeccccccc
Confidence 6899999886543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=88.20 E-value=1.5 Score=41.65 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=56.9
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------c-
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------K- 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~- 693 (842)
.|+++|=-|++.| .++..++++ |++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+.. .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 4778898887766 345566665 89999999999999999888887663 6888999986532 1
Q ss_pred CCCccEEEEcch
Q 035870 694 ANKYDRIISCEM 705 (842)
Q Consensus 694 ~~~fD~i~s~~~ 705 (842)
.++.|.+|.+..
T Consensus 84 ~~~idilvnnAG 95 (259)
T d2ae2a_ 84 HGKLNILVNNAG 95 (259)
T ss_dssp TTCCCEEEECCC
T ss_pred CCCceEEEECCc
Confidence 247899998743
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.13 E-value=0.21 Score=43.57 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa 31 (842)
|+|.|||+|--|-+-|..|.+.|++|+|.++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r 31 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGS 31 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECS
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcC
Confidence 7999999999999999999999999999876
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=88.04 E-value=0.25 Score=42.40 Aligned_cols=32 Identities=41% Similarity=0.636 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
.+|+|||+|--|-++|+.|...|. ++.+++.+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 379999999999999999999986 78888753
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=88.00 E-value=0.21 Score=44.69 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
++|.|||-|.-|...|..|.++|++|.+++++.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998744
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.77 E-value=0.24 Score=42.58 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.4
Q ss_pred cEEEECC-ChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 2 RVAVIGA-GISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 2 dV~IIGa-GiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
+|+|||| |.-|-++|+.|+..|. ++.+++.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 7999996 9999999999999986 68888864
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=87.65 E-value=0.67 Score=45.66 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=51.2
Q ss_pred CeEEEeccCchHHHHHHHHhcCCEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 631 QEVLEIGCGWGTLAIEIVKRTGCKY-TGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 631 ~~vLDiGcG~G~~~~~la~~~~~~v-~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
++|||+-||-|++..-+-+. |.++ .++|+++...+..+.+. .-.++++|+.++. .-...|+++...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-------CSEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCCccCChhhCCHhHcccccEEeecc
Confidence 47999999999998877665 7664 49999998888777663 2366889999886 335789999753
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=87.56 E-value=0.19 Score=39.78 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=28.3
Q ss_pred CcEEEECCChHHHHH-HHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVS-AYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsa-A~~L~~~G~~V~VlEa 31 (842)
|+|-+||-|=+|+|+ |..|.++|++|+--|.
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~ 40 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDI 40 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence 578999999999999 9999999999998775
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.55 E-value=1.6 Score=41.21 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=52.1
Q ss_pred EEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cCCCcc
Q 035870 633 VLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KANKYD 698 (842)
Q Consensus 633 vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~~~fD 698 (842)
+|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+.+.+ .++.++.+|+.+.. .-++.|
T Consensus 4 alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 355676655 344555555 8999999999999999988888776 37889999987643 237899
Q ss_pred EEEEcc
Q 035870 699 RIISCE 704 (842)
Q Consensus 699 ~i~s~~ 704 (842)
.+|.+.
T Consensus 81 ilVnnA 86 (255)
T d1gega_ 81 VIVNNA 86 (255)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.42 E-value=0.5 Score=39.56 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=58.2
Q ss_pred cCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEEcchhhhcCh
Q 035870 638 CGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIISCEMIEAVGH 711 (842)
Q Consensus 638 cG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s~~~~~~~~~ 711 (842)
||+|..+..+++. -+..++.+|.+++..+.+++. .+.++.+|..+.. .-.+.+.+++.. ++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES 72 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence 6889999999987 455789999999987766432 5789999987644 235778888742 22
Q ss_pred hhHHHHHHHHHhccccCcEEEEE
Q 035870 712 EFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 712 ~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
+.....+-...+.+.|...++..
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEE
T ss_pred hhhhHHHHHHHHHHCCCceEEEE
Confidence 22333344555667888777764
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.37 E-value=0.29 Score=42.30 Aligned_cols=33 Identities=24% Similarity=0.552 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
+||.|||+|--|-++|+.|...+. ++.+++...
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 489999999999999999988875 788888633
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=1.2 Score=41.96 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=52.6
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCcc
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKYD 698 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~fD 698 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++...+.+ + ++..++.|+.+.. .-++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVREC---P---GIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 5789999998876 555666666 899999999998877665443 2 5788899986643 336899
Q ss_pred EEEEcch
Q 035870 699 RIISCEM 705 (842)
Q Consensus 699 ~i~s~~~ 705 (842)
.+|.+..
T Consensus 79 ilVnnAg 85 (244)
T d1pr9a_ 79 LLVNNAA 85 (244)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9998753
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=1.2 Score=42.73 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=70.6
Q ss_pred CCeEEEe-ccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 630 GQEVLEI-GCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 630 ~~~vLDi-GcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
|+||-=| |++.| .++..+++..+++|+..+.+++.++.+.+.++..+. ++.++.+|+.+.. ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 6677444 55544 233445554578999999999999999999888764 6899999987753 23
Q ss_pred CCccEEEEcchhhhcC------hhhH-----------HHHHHHHHhccccCcEEEEEe
Q 035870 695 NKYDRIISCEMIEAVG------HEFM-----------EEFFGCCESLLAEDGLLVLQF 735 (842)
Q Consensus 695 ~~fD~i~s~~~~~~~~------~~~~-----------~~~~~~~~~~LkpgG~~~~~~ 735 (842)
++.|++|.|..+.+.. ++.+ -.+.+.+...||++|+++...
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 6899999986442211 1112 234556677888999877643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.15 E-value=0.3 Score=42.46 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
+|+|+|.|-.|...|..|.+.|.+|+|+|..+
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 49999999999999999999999999999754
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.10 E-value=0.23 Score=44.55 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa 31 (842)
|+|+|||+|-++-++++.|++.| +|+|+-|
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR 48 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANR 48 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehh
Confidence 68999999999999999998877 8888866
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=87.07 E-value=0.21 Score=44.43 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
|+|+|+|+|=++-++++.|.+.+.+|+|+-|+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~ 50 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRT 50 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence 58999999999999999999988899999774
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.28 Score=45.04 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=30.0
Q ss_pred CcEEEECC-ChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGA-GISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGa-GiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|+|| |..|-..+.+|.++|++|+++-++.
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 68999996 9999999999999999999997643
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.87 E-value=0.31 Score=42.55 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCC--eEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV--EVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~--~V~VlEa~ 32 (842)
+|.|||+|--|-++|+.|...|. ++.+++.+
T Consensus 21 KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 21 KITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 79999999999999999999986 79999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.63 E-value=0.25 Score=44.51 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
+|+|+|||..|+.++..++..|. +|++.+.++
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred EEEEECCCccchhheeccccccccccccccccc
Confidence 68999999999999999999997 799998643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.31 Score=43.14 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
+|+|+|+|..|+.++..++..|.+|++++.+
T Consensus 33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEeccchHHHHHHHHhhcccccchhhccc
Confidence 6999999999999999998899999988863
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.36 E-value=1.3 Score=41.78 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCCeEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.++.+|=-|++.| +...+|+. .|++|+.+|.+++.++.+.+.+++.+. ++.++.+|+.+.. .-
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3567777786655 44444443 389999999999999999888877653 6899999987643 23
Q ss_pred CCccEEEEcch
Q 035870 695 NKYDRIISCEM 705 (842)
Q Consensus 695 ~~fD~i~s~~~ 705 (842)
++.|.+|.+..
T Consensus 86 g~iDilvnnag 96 (251)
T d2c07a1 86 KNVDILVNNAG 96 (251)
T ss_dssp SCCCEEEECCC
T ss_pred CCceeeeeccc
Confidence 78999998753
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.28 E-value=2.5 Score=40.20 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLS-EEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=-|++.| .++..++++ |++|+.++.+ ++.++...+.+++.+. ++.++.+|..+.. .
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 4778999998777 456666676 9999999876 6677777777777664 6899999987642 2
Q ss_pred CCCccEEEEcchh------hhcChhhHHH-----------HHHHHHhccccCcEEEEE
Q 035870 694 ANKYDRIISCEMI------EAVGHEFMEE-----------FFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 694 ~~~fD~i~s~~~~------~~~~~~~~~~-----------~~~~~~~~LkpgG~~~~~ 734 (842)
.+..|.++.+... +....+.+.. ..+.+...|+.+|..++.
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 3678999987532 2333333332 345666777777776654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.17 E-value=0.34 Score=40.11 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=30.6
Q ss_pred CcEEEECCC-----------hHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAG-----------ISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaG-----------iaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
|+|+|||+| .++..|+..|++.|++++++--++.
T Consensus 8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 689999998 5899999999999999999987664
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.13 E-value=0.38 Score=43.21 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~~ 34 (842)
|+|+|||+|=+|-++++.|.+.|. +++|+.++..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 689999999999999999999987 7888887543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.99 E-value=1.5 Score=41.30 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=54.6
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVK-EAGLQDLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~-~~~l~~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+. ..+ .++.++.+|+.+.. .
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888898776 455666666 9999999999998877766554 334 36888999987643 1
Q ss_pred CCCccEEEEcch
Q 035870 694 ANKYDRIISCEM 705 (842)
Q Consensus 694 ~~~fD~i~s~~~ 705 (842)
-++.|.+|.+..
T Consensus 81 ~g~iDiLVnnAG 92 (251)
T d1vl8a_ 81 FGKLDTVVNAAG 92 (251)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 268999998743
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.77 E-value=1.7 Score=41.06 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------c-
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------K- 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~- 693 (842)
.|+++|=-|++.| ..+..++++ |++|+.++.+++.++.+.+.+...+. ++..+.+|+.+.. .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 4778999998776 355666666 89999999999999998888877653 7899999986542 1
Q ss_pred CCCccEEEEcch
Q 035870 694 ANKYDRIISCEM 705 (842)
Q Consensus 694 ~~~fD~i~s~~~ 705 (842)
.+..|.++.+..
T Consensus 84 ~g~idilvnnAG 95 (259)
T d1xq1a_ 84 GGKLDILINNLG 95 (259)
T ss_dssp TTCCSEEEEECC
T ss_pred CCCccccccccc
Confidence 367899998754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.52 E-value=1.1 Score=42.46 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+.. ..++.++.+|+.+.. .-
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4778888887665 345555665 89999999999988877776632 348999999987643 12
Q ss_pred CCccEEEEcc
Q 035870 695 NKYDRIISCE 704 (842)
Q Consensus 695 ~~fD~i~s~~ 704 (842)
++.|.+|.+.
T Consensus 81 G~iDiLVnnA 90 (251)
T d1zk4a1 81 GPVSTLVNNA 90 (251)
T ss_dssp SSCCEEEECC
T ss_pred CCceEEEecc
Confidence 6889999875
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=85.40 E-value=1.2 Score=40.10 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=56.9
Q ss_pred HHHHHHcCC-CCCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--
Q 035870 619 SLLIEKARV-SKGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-- 692 (842)
Q Consensus 619 ~~l~~~l~~-~~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 692 (842)
..+.+.+.. -.++++|=.|++.| .++..++++ |++|+.++.+++.++...+.+.... ++.+...|..+..
T Consensus 11 ~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~ 86 (191)
T d1luaa1 11 ALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASR 86 (191)
T ss_dssp HHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHH
T ss_pred HHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHH
Confidence 344455442 36889999997655 344555565 8999999999999988888776543 4555666655433
Q ss_pred --cCCCccEEEEcch
Q 035870 693 --KANKYDRIISCEM 705 (842)
Q Consensus 693 --~~~~fD~i~s~~~ 705 (842)
.-+..|+|+.+..
T Consensus 87 ~~~~~~iDilin~Ag 101 (191)
T d1luaa1 87 AEAVKGAHFVFTAGA 101 (191)
T ss_dssp HHHTTTCSEEEECCC
T ss_pred HHHhcCcCeeeecCc
Confidence 2367899998754
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.36 E-value=1.5 Score=41.66 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----------~ 693 (842)
.|+.+|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+.. .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4667788887765 344555565 899999999999999999888877643 36899999986643 2
Q ss_pred CCCccEEEEcc
Q 035870 694 ANKYDRIISCE 704 (842)
Q Consensus 694 ~~~fD~i~s~~ 704 (842)
-++.|.+|.+.
T Consensus 83 ~g~iDilvnnA 93 (264)
T d1spxa_ 83 FGKLDILVNNA 93 (264)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEeeccc
Confidence 26889999874
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=85.21 E-value=0.77 Score=38.53 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=51.6
Q ss_pred EEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEEcc
Q 035870 633 VLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIISCE 704 (842)
Q Consensus 633 vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s~~ 704 (842)
++=+|+ |.++..+++. .|.+|+.+|.+++.++.+++. ...++.+|..+.. .-...|.|++.
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~- 71 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSLGIRNFEYVIVA- 71 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHHTGGGCSEEEEC-
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhccCCccccEEEEE-
Confidence 444555 5666666654 588999999999988877532 2467788987765 22467877763
Q ss_pred hhhhcChhhHHHHHHHHHhccccCcEEEE
Q 035870 705 MIEAVGHEFMEEFFGCCESLLAEDGLLVL 733 (842)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~LkpgG~~~~ 733 (842)
+++..-...+-.+.+.+.|...++.
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 72 ----IGANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp ----CCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred ----cCchHHhHHHHHHHHHHcCCCcEEe
Confidence 2222223333334444445566554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.91 E-value=0.33 Score=43.28 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~ 32 (842)
+|+|+|+|..|+.++..++..|. +|++.+.+
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred EEEEEcCCcchhhhhhhhhcccccccccccch
Confidence 69999999999999999999996 78888763
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=84.73 E-value=1.4 Score=37.95 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=57.5
Q ss_pred eEEEeccCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----cCCCccEEEEc
Q 035870 632 EVLEIGCGWGTLAIEIVKR---TGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----KANKYDRIISC 703 (842)
Q Consensus 632 ~vLDiGcG~G~~~~~la~~---~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----~~~~fD~i~s~ 703 (842)
+|+= ||+|..+..+++. .+.+|+.+|.+++......+.... ..+.++.+|..+.. .-++.|.|++.
T Consensus 5 HiII--~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIV--CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEE--ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEE--ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 5555 4556777777665 478999999998754443333332 25899999987654 23578888874
Q ss_pred chhhhcChhhHHHHHHHHHhccccCcEEEEE
Q 035870 704 EMIEAVGHEFMEEFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~ 734 (842)
. +++..........+-+.|.-.++..
T Consensus 79 ~-----~~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 79 S-----DNDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp S-----SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred c-----ccHHHHHHHHHHHHHhCCCCceEEE
Confidence 2 2222333344455566777777764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.57 E-value=0.89 Score=43.50 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+.+|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+... .++.++.+|+.+.. .-
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5778898997766 344555555 899999999999888877776443 47888999987643 23
Q ss_pred CCccEEEEcch
Q 035870 695 NKYDRIISCEM 705 (842)
Q Consensus 695 ~~fD~i~s~~~ 705 (842)
++.|.+|.+..
T Consensus 81 g~iD~lVnnAG 91 (268)
T d2bgka1 81 GKLDIMFGNVG 91 (268)
T ss_dssp SCCCEEEECCC
T ss_pred CCcceeccccc
Confidence 68899998753
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=84.34 E-value=0.33 Score=42.09 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|.|+|+|=|..|-.+|..|+..|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 689999999999999999999999999999855
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.33 E-value=1.2 Score=42.80 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=58.7
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+.+.+.. .++..+.+|+.+.. .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4778888888776 355666665 899999999999999999888887653 47899999987643 2
Q ss_pred CCCccEEEEcc
Q 035870 694 ANKYDRIISCE 704 (842)
Q Consensus 694 ~~~fD~i~s~~ 704 (842)
-++.|.+|.+.
T Consensus 82 ~G~iDilVnnA 92 (274)
T d1xhla_ 82 FGKIDILVNNA 92 (274)
T ss_dssp HSCCCEEEECC
T ss_pred cCCceEEEeec
Confidence 26789999874
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.25 E-value=2 Score=40.11 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=50.4
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-------cCCCcc
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-------KANKYD 698 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-------~~~~fD 698 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++...+.+ .++..+.+|+.+.. .-++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 4788998887766 345555665 899999999988776655432 15788899987654 237889
Q ss_pred EEEEcc
Q 035870 699 RIISCE 704 (842)
Q Consensus 699 ~i~s~~ 704 (842)
.+|.+.
T Consensus 77 ilVnnA 82 (242)
T d1cyda_ 77 LLVNNA 82 (242)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999874
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=84.21 E-value=0.4 Score=41.92 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=28.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCC-eEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGV-EVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa 31 (842)
|+|+|||+|-.|-..|.+|.+.|. +++|.-+
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR 56 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR 56 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence 579999999999999999999997 6888865
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=84.20 E-value=0.39 Score=46.62 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.6
Q ss_pred CcEEEECC-ChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGA-GISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGa-GiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|+|| |..|-..+..|.++|++|+++.++.
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 78999998 9999999999999999999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.51 Score=40.99 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|.|+|||=|..|-..|..|+..|.+|+|.|..+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 689999999999999999999999999999844
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.58 E-value=3 Score=40.28 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=55.8
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC---CCCCeEEEEccccCCc----------
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAG---LQDLIRLYLCDYRQLA---------- 692 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~~~---------- 692 (842)
.|+.+|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+.... ...++..+.+|+.+..
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~-Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 5788898887766 344555555 8999999999999888877776532 1247889999987653
Q ss_pred -cCCCccEEEEcch
Q 035870 693 -KANKYDRIISCEM 705 (842)
Q Consensus 693 -~~~~fD~i~s~~~ 705 (842)
..++.|.+|.+..
T Consensus 90 ~~~G~iDiLVnnAg 103 (297)
T d1yxma1 90 DTFGKINFLVNNGG 103 (297)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHhCCeEEEEeecc
Confidence 2368899998753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.37 E-value=0.48 Score=41.70 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCeEEEEec
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGVEVVLYEK 31 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~~V~VlEa 31 (842)
+|+|+|+|..|+.++..++..|.+|.+.+.
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~ 59 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDI 59 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEeecccchhhhhHHHhcCCCeEeccCC
Confidence 689999999999999999999999988875
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.37 E-value=0.5 Score=40.50 Aligned_cols=33 Identities=42% Similarity=0.601 Sum_probs=27.1
Q ss_pred CcEEEEC-CChHHHHHHHHHHh-C--CCeEEEEecCC
Q 035870 1 MRVAVIG-AGISGLVSAYVLAK-A--GVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIG-aGiaGLsaA~~L~~-~--G~~V~VlEa~~ 33 (842)
|||.||| ||--|-+.|+.|+. . +.++.++|..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 7999999 59999999999864 3 45899998643
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=83.20 E-value=0.69 Score=35.75 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=27.5
Q ss_pred CcEEEECCChHHHHH-HHHHHhCCCeEEEEec
Q 035870 1 MRVAVIGAGISGLVS-AYVLAKAGVEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsa-A~~L~~~G~~V~VlEa 31 (842)
|+|-+||-|=+|+|+ |..|.++|++|+--|.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~ 33 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNI 33 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeC
Confidence 688999999999977 8899999999998875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.99 E-value=1.3 Score=42.40 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=58.3
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQ-DLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=.|++.| ..+..++++ |++|+.+|.+++.++.+.+.+.+.+.. .++..+.+|+.+.. .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888887766 455666665 899999999999999999988877643 36899999987643 2
Q ss_pred CCCccEEEEcc
Q 035870 694 ANKYDRIISCE 704 (842)
Q Consensus 694 ~~~fD~i~s~~ 704 (842)
-++.|.+|.+.
T Consensus 83 ~g~iDilvnnA 93 (272)
T d1xkqa_ 83 FGKIDVLVNNA 93 (272)
T ss_dssp HSCCCEEEECC
T ss_pred hCCceEEEeCC
Confidence 26889999874
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.91 E-value=1.9 Score=40.45 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=52.7
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++...+.+. +++.++.+|+.+.. .-
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4778888898777 455666666 8999999999988776665542 36888999987643 22
Q ss_pred CCccEEEEcch
Q 035870 695 NKYDRIISCEM 705 (842)
Q Consensus 695 ~~fD~i~s~~~ 705 (842)
+..|.+|.+..
T Consensus 79 g~idilinnAG 89 (244)
T d1nffa_ 79 GGLHVLVNNAG 89 (244)
T ss_dssp SCCCEEEECCC
T ss_pred CCCeEEEECCc
Confidence 67899998743
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.76 E-value=0.51 Score=42.86 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=26.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKD 32 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~ 32 (842)
+|+|+|+|..||.++..++..|. +|++.+.+
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~ 59 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred EEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence 68999999999999999888776 78888764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=82.71 E-value=0.6 Score=42.15 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=29.4
Q ss_pred CcEEEEC-CChHHHHHHHHHHhCCCeEEEEecCC
Q 035870 1 MRVAVIG-AGISGLVSAYVLAKAGVEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIG-aGiaGLsaA~~L~~~G~~V~VlEa~~ 33 (842)
|+|+|.| +|-.|..+|..|++.|.+|+++.++.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 6788999 59999999999999999999998743
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.64 E-value=2.3 Score=40.19 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=69.0
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEE-cCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGI-TLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gi-d~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=.|++.| ..+..++++ |++|+.. .-+++.++.+.+.+.+.|. ++.++.+|+.+.. .
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHH
Confidence 5788998886655 555566665 8898864 6777878888888888764 7899999987642 2
Q ss_pred CCCccEEEEcchhhh------cChhhHH-----------HHHHHHHhccccCcEEEEE
Q 035870 694 ANKYDRIISCEMIEA------VGHEFME-----------EFFGCCESLLAEDGLLVLQ 734 (842)
Q Consensus 694 ~~~fD~i~s~~~~~~------~~~~~~~-----------~~~~~~~~~LkpgG~~~~~ 734 (842)
.+..|.+|.+..+.+ ...+.++ ...+.+...++.+|..++.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 367899998754332 2322222 2344555666777766553
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.53 E-value=4.1 Score=39.74 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=92.7
Q ss_pred CCCCeEEEeccCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEc
Q 035870 628 SKGQEVLEIGCGWGTLAIEIVKR-TGCKYTGITLSEEQLKYAEMKVKEAG--------------------LQDLIRLYLC 686 (842)
Q Consensus 628 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gid~s~~~~~~a~~~~~~~~--------------------l~~~v~~~~~ 686 (842)
.+...|+-+|||.=.....+... ++.+++=||.-+ .++.=++.+.+.. -+++.+++-+
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 45568999999998888777654 455666667644 4443333333210 1246788889
Q ss_pred cccCCc----------cCCCccEEEEcchhhhcChhhHHHHHHHHHhccccCcEEEEEeecC---CCcccccccCccchh
Q 035870 687 DYRQLA----------KANKYDRIISCEMIEAVGHEFMEEFFGCCESLLAEDGLLVLQFISI---PDERYNEYRLSSDFI 753 (842)
Q Consensus 687 d~~~~~----------~~~~fD~i~s~~~~~~~~~~~~~~~~~~~~~~LkpgG~~~~~~~~~---~~~~~~~~~~~~~~~ 753 (842)
|++++. ....--++++-.++.+++.+...++++.+.+..+. |.+++-+... |++.+..... ..+-
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~i~~~~p~D~FG~~M~-~nl~ 251 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDPIGGSQPNDRFGAIMQ-SNLK 251 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEECCCCSTTCCHHHHHH-HHHH
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEeccCCCCCCCChHHHHHH-HHHH
Confidence 988753 11233478888999999998899999999888855 5555545443 4443332211 1121
Q ss_pred --hhcccCC-CCCCCHHHHHHHHhhcCCcEEEEEEecC
Q 035870 754 --KEYIFPG-GCLPSLSRITSAMSVASRLCVEQVENIG 788 (842)
Q Consensus 754 --~~~i~p~-~~~~~~~~~~~~~~~~~gf~v~~~~~~~ 788 (842)
+.-..|+ ...|+++...+.+ .|+.-....++.
T Consensus 252 ~~r~~~l~~~~~~~t~~~~~~r~---~~~~~~~~~dm~ 286 (328)
T d1rjda_ 252 ESRNLEMPTLMTYNSKEKYASRW---SAAPNVIVNDMW 286 (328)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGG---TTSSEEEEEEHH
T ss_pred HhcCCCCCccccCCCHHHHHHHH---hcCCccchhhHH
Confidence 1112233 3457776654433 477666566543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=82.53 E-value=0.5 Score=40.91 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=27.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCC-CeEEEEec
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAG-VEVVLYEK 31 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G-~~V~VlEa 31 (842)
|+|.+||+|--|-+-|..|.++| ++|.+.++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r 32 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANR 32 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence 79999999999999999888776 88888876
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.49 E-value=1.9 Score=40.25 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.++++|=-|++.| ..+..++++ |++|+.+|.+++.++.+.+.+ +++++.+|+.+.. .-
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~-G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 4678888888766 344555555 899999999998877665432 5678899987643 12
Q ss_pred CCccEEEEcc
Q 035870 695 NKYDRIISCE 704 (842)
Q Consensus 695 ~~fD~i~s~~ 704 (842)
++.|.+|.+.
T Consensus 76 g~iDilVnnA 85 (242)
T d1ulsa_ 76 GRLDGVVHYA 85 (242)
T ss_dssp SSCCEEEECC
T ss_pred CCceEEEECC
Confidence 6799999874
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.42 E-value=2 Score=40.32 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++...+.. .++.++.+|+.+.. .-
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 5788899998776 445556665 899999999998877665442 26788999987643 12
Q ss_pred CCccEEEEcc
Q 035870 695 NKYDRIISCE 704 (842)
Q Consensus 695 ~~fD~i~s~~ 704 (842)
++.|.+|.+.
T Consensus 78 g~iDilVnnA 87 (250)
T d1ydea1 78 GRLDCVVNNA 87 (250)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEecc
Confidence 6789999874
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=82.30 E-value=1 Score=44.44 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=51.7
Q ss_pred CCCeEEEeccCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 035870 629 KGQEVLEIGCGWGTLAIEIVKRTGCK-YTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA--KANKYDRIISCE 704 (842)
Q Consensus 629 ~~~~vLDiGcG~G~~~~~la~~~~~~-v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~~~~fD~i~s~~ 704 (842)
.+.+|||+-||-|++...+-+. |.+ |.++|+++.+++..+.+... ..++|+.++. .-..+|+++...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeeccc
Confidence 5789999999999999887665 665 56699999999988887631 1357888876 235789999753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=82.24 E-value=0.58 Score=41.57 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
+|+|+|+|.-|+.++..++..|. +|++.|.++
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence 68999999999999999999997 577777643
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=82.19 E-value=0.5 Score=46.14 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=29.4
Q ss_pred CcEEEECC-ChHHHHHHHHHHhCCCeEEEEecC
Q 035870 1 MRVAVIGA-GISGLVSAYVLAKAGVEVVLYEKD 32 (842)
Q Consensus 1 kdV~IIGa-GiaGLsaA~~L~~~G~~V~VlEa~ 32 (842)
++|+|+|| |..|...+.+|.++|++|+++-++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~ 36 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP 36 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 58999997 999999999999999999999764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.87 E-value=0.88 Score=36.80 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCeEEEEecCCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKAGVEVVLYEKDDY 34 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~G~~V~VlEa~~~ 34 (842)
++|.|||||==|...|....+.|++|.|++..+.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 3699999999999999999999999999997643
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.60 E-value=0.66 Score=43.16 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC--------------------C-CeEEEEecCC
Q 035870 1 MRVAVIGAGISGLVSAYVLAKA--------------------G-VEVVLYEKDD 33 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~~~--------------------G-~~V~VlEa~~ 33 (842)
|+|+|||+|-.+|=||..|.+. | .+|+++-++.
T Consensus 40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 6899999999999999999883 5 4888887754
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=1.7 Score=41.00 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=55.9
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+++|=-|++.| ..+..++++ |++|+.++.+++.++.+.+.+++.+ .++.++.+|+.+.. .-
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4778887776655 334445554 8999999999999999988888765 37889999987643 12
Q ss_pred CCccEEEEcch
Q 035870 695 NKYDRIISCEM 705 (842)
Q Consensus 695 ~~fD~i~s~~~ 705 (842)
++.|.+|.+..
T Consensus 87 g~iDilvnnAG 97 (255)
T d1fmca_ 87 GKVDILVNNAG 97 (255)
T ss_dssp SSCCEEEECCC
T ss_pred CCCCEeeeCCc
Confidence 68999998743
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.86 E-value=2.4 Score=40.00 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLS-EEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=-|++.| ..+..++++ |++|+.++.+ ++.++.+.+.+.+.+ ..++.++.+|+.+.. .
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678887787766 355566666 8999999986 566666666554332 137889999987743 1
Q ss_pred CCCccEEEEcch------hhhcChhhHHHHH-----------HHHHhcccc--CcEEEEE
Q 035870 694 ANKYDRIISCEM------IEAVGHEFMEEFF-----------GCCESLLAE--DGLLVLQ 734 (842)
Q Consensus 694 ~~~fD~i~s~~~------~~~~~~~~~~~~~-----------~~~~~~Lkp--gG~~~~~ 734 (842)
-++.|.+|.+.. ++.++.+++...+ +.+...++. +|.++..
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~i 140 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINI 140 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeec
Confidence 268999998743 3444444444333 333444443 5777664
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=80.72 E-value=2.1 Score=43.11 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=45.3
Q ss_pred cCCCCCCeEEEeccCchHHHHHHHHh-c--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 035870 625 ARVSKGQEVLEIGCGWGTLAIEIVKR-T--GCKYTGITLSEEQLKYAEMKVKEAGLQ 678 (842)
Q Consensus 625 l~~~~~~~vLDiGcG~G~~~~~la~~-~--~~~v~gid~s~~~~~~a~~~~~~~~l~ 678 (842)
..++++..++|||+-.|..+..+++. . ..+|+++|+++...+..+++++.+.+.
T Consensus 208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 34678889999999999998877765 2 358999999999999999999877653
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.49 E-value=0.78 Score=42.31 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=18.6
Q ss_pred CcEEEECCChHHHHHHHHHH
Q 035870 1 MRVAVIGAGISGLVSAYVLA 20 (842)
Q Consensus 1 kdV~IIGaGiaGLsaA~~L~ 20 (842)
|+|+|||+|-.+|=||..|.
T Consensus 40 k~VvVIGgGNvAlD~AR~ll 59 (216)
T d1lqta1 40 ARAVVIGNGNVALDVARILL 59 (216)
T ss_dssp SEEEEECCSHHHHHHHHHHH
T ss_pred ceEEEECCCchhHhhhhhhc
Confidence 58999999999999998887
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.45 E-value=3.5 Score=38.39 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=51.7
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------cC
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLSEEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------KA 694 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~~ 694 (842)
.|+++|=-|++.| ..+..++++ |++|+.+|.+++.++...+.+. .++..+.+|+.+.. .-
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~-G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR-GAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 4677888887766 455566665 8999999999998887776653 26788899986643 23
Q ss_pred CCccEEEEcc
Q 035870 695 NKYDRIISCE 704 (842)
Q Consensus 695 ~~fD~i~s~~ 704 (842)
++.|.+|.+.
T Consensus 77 g~iDilVnnA 86 (243)
T d1q7ba_ 77 GEVDILVNNA 86 (243)
T ss_dssp CSCSEEEECC
T ss_pred CCcceehhhh
Confidence 6899999874
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.44 E-value=0.72 Score=40.97 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCC-eEEEEecCC
Q 035870 2 RVAVIGAGISGLVSAYVLAKAGV-EVVLYEKDD 33 (842)
Q Consensus 2 dV~IIGaGiaGLsaA~~L~~~G~-~V~VlEa~~ 33 (842)
.|+|+|+|..||.+...++..|. +|.++|.++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 48999999999999999999984 899998744
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.16 E-value=3.5 Score=38.91 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCeEEEeccCch---HHHHHHHHhcCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEccccCCc-----------c
Q 035870 629 KGQEVLEIGCGWG---TLAIEIVKRTGCKYTGITLS-EEQLKYAEMKVKEAGLQDLIRLYLCDYRQLA-----------K 693 (842)
Q Consensus 629 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gid~s-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------~ 693 (842)
.|+++|=-|++.| ..+..++++ |++|..++.+ ++.++.+.+.+++.+. ++.++.+|+.+.. .
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4778888887776 455566665 8999999987 4567777777777653 6889999987643 2
Q ss_pred CCCccEEEEcch
Q 035870 694 ANKYDRIISCEM 705 (842)
Q Consensus 694 ~~~fD~i~s~~~ 705 (842)
-++.|.+|.+..
T Consensus 83 ~G~iDiLVnnAG 94 (261)
T d1geea_ 83 FGKLDVMINNAG 94 (261)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEeeccce
Confidence 268899998753
|