Citrus Sinensis ID: 035871
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1127 | 2.2.26 [Sep-21-2011] | |||||||
| Q6AI08 | 1181 | HEAT repeat-containing pr | yes | no | 0.261 | 0.249 | 0.302 | 3e-30 | |
| Q5R5R2 | 1181 | HEAT repeat-containing pr | yes | no | 0.234 | 0.223 | 0.313 | 3e-30 | |
| Q7ZY56 | 1174 | HEAT repeat-containing pr | N/A | no | 0.263 | 0.252 | 0.301 | 7e-30 | |
| A1EC95 | 1252 | HEAT repeat-containing pr | yes | no | 0.245 | 0.221 | 0.307 | 2e-29 | |
| Q6P1G0 | 1184 | HEAT repeat-containing pr | yes | no | 0.232 | 0.221 | 0.311 | 5e-29 | |
| A9JRI0 | 1201 | HEAT repeat-containing pr | yes | no | 0.246 | 0.231 | 0.299 | 3e-28 | |
| Q559R1 | 1521 | Putative uncharacterized | yes | no | 0.106 | 0.078 | 0.355 | 5e-13 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.220 | 0.093 | 0.232 | 2e-06 |
| >sp|Q6AI08|HEAT6_HUMAN HEAT repeat-containing protein 6 OS=Homo sapiens GN=HEATR6 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 162/317 (51%), Gaps = 22/317 (6%)
Query: 751 WSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD 809
W+ M+ +P LQ+ ++ +A + I F +L + Q I+ L+ L+D
Sbjct: 768 WTMMLNGPLPRALQNSEHPTLQASACDALSSILPEAFSNLPNDRQMLCITVLL--GLNDS 825
Query: 810 VAS-VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
V++A RA+GV FP + Q + +A+ ++ D ++VR A+W+L N+ D
Sbjct: 826 KNRLVKAATSRALGVYVLFPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNLTD 885
Query: 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS 928
++ ++ PS + L+ + SA+ +KD DK+KSNAVR LGNL F++ +
Sbjct: 886 TL--IVNMETPDPSFQEEFSGLLLLKMLRSAIEASKDKDKVKSNAVRALGNLLHFLQPSH 943
Query: 929 SSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
P + +E +QAL+S V T +KV+WN C A+ N+F N + L W
Sbjct: 944 IEKPTF---AEIIEESIQALISTVLTEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQA 1000
Query: 988 FSILLLLLRDSSNFKIRIQAAAALAVP------SSVSDYGKSFSDVVQGLEHILENLGAD 1041
++ L ++ NFK+RI++AAAL+VP SV Y + ++ +V L+ + + D
Sbjct: 1001 YNALTSVVTSCKNFKVRIRSAAALSVPGKREQYGSVDQYARIWNALVTALQKSEDTI--D 1058
Query: 1042 HLSAPSSFKYRVALQKQ 1058
L FKY V+L+ Q
Sbjct: 1059 FL----EFKYCVSLRTQ 1071
|
Amplification-dependent oncogene. Homo sapiens (taxid: 9606) |
| >sp|Q5R5R2|HEAT6_PONAB HEAT repeat-containing protein 6 OS=Pongo abelii GN=HEATR6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 10/274 (3%)
Query: 751 WSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD 809
W+ M+ +P LQ+ ++ A + I F +L K+ Q I+ L+ L+D
Sbjct: 768 WTMMLNGPLPRALQNSEHPTLQAGACDALSSILPEAFSNLPKDRQILCITVLL--GLNDS 825
Query: 810 VAS-VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
V++A RA+GV FP + Q + +A+ ++ D ++VR A+W+L N+ D
Sbjct: 826 KNRLVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLEDKSLNVRANAAWSLGNLTD 885
Query: 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS 928
++ ++ PS + L+ + SA+ +KD DK+KSNAVR LGNL F++ +
Sbjct: 886 TL--IVNMETPDPSFQEEFSGLLLLKMLRSAIEASKDKDKVKSNAVRALGNLLHFLQPSH 943
Query: 929 SSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
P + +E +QAL+S V T +KV+WN C A+ N+F N + L W
Sbjct: 944 IEKPTF---AEIIEESIQALISTVLTEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQA 1000
Query: 988 FSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYG 1021
++ L ++ NFK+RI++AAAL+VP YG
Sbjct: 1001 YNALTSVVTSCKNFKVRIRSAAALSVPGKREQYG 1034
|
Pongo abelii (taxid: 9601) |
| >sp|Q7ZY56|HEAT6_XENLA HEAT repeat-containing protein 6 OS=Xenopus laevis GN=heatr6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 160/315 (50%), Gaps = 18/315 (5%)
Query: 751 WSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD 809
W+ ++ +P LQ+ ++T+A + + F +L + Q I+ L+ H +
Sbjct: 772 WNMILNGPLPAALQNEQHPTLQTSACDALSSVLPEAFSNLPNDRQILCITLLLGLN-HSE 830
Query: 810 VASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869
V++AA RA+GV FP + Q + +A+ + D +VR A+W+L N+ DS
Sbjct: 831 NPLVKAAAARALGVYILFPCLRQDVMFVADTANAILMCLSDRSPNVRAKAAWSLGNLTDS 890
Query: 870 IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSS 929
+ ++ A S + L+ + +A +KD DK+KSNAVR LGNL F++
Sbjct: 891 L--IVNMEAMGQSFQEEFSDMLLLKMLWAATEASKDKDKVKSNAVRALGNLLHFLQ---- 944
Query: 930 SHPASLGDSRWLERI---VQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
P + R+ E I +QALVS V G +KV+WN C AL N+F N + L W
Sbjct: 945 --PYHIVKPRFCESIECAIQALVSTVLGDGTMKVKWNACYALGNVFKNTALPLGKATWTA 1002
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYG--KSFSDVVQGLEHILENLGADHL 1043
+ ++ L +++ NFK+RI++A AL++P S YG + + D+ L L+ ++
Sbjct: 1003 AAYNALTTVVKACKNFKVRIKSAMALSIPFSREQYGSTEQYCDIWNALVTALQK--SEDT 1060
Query: 1044 SAPSSFKYRVALQKQ 1058
FKY +L++Q
Sbjct: 1061 EDFLEFKYSASLREQ 1075
|
Xenopus laevis (taxid: 8355) |
| >sp|A1EC95|HEAT6_RAT HEAT repeat-containing protein 6 OS=Rattus norvegicus GN=Heatr6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)
Query: 751 WSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI---DSAL 806
W+ M+ +P LQ ++ +A + I F SL + Q I+ L+ DS
Sbjct: 839 WTAMLNGPLPRALQSTEHPTLQASACDALSSILPEAFSSLPNDKQILCITMLLGLNDSKN 898
Query: 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866
H V++A RA+GV FP + Q + +A+ ++ D ++VR A+W+L N+
Sbjct: 899 H----LVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLQDKSLNVRAKAAWSLGNL 954
Query: 867 CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY 926
D++ +D PS + L+ + +SA+ + D DK+KSNAVR LGNL F++
Sbjct: 955 TDTLIVNMD--TPDPSFQDEFSGLLLLKMLQSAIQASTDKDKVKSNAVRALGNLLHFLQP 1012
Query: 927 TSSSHPASLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
+ P + +E +QAL+S V +KV+WN C A+ N+F N + L W
Sbjct: 1013 SHIERPRF---AEIIEESIQALISTVVNEAAMKVRWNACYAMGNVFKNPALPLGTAPWTS 1069
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYG--KSFSDVVQGLEHILE 1036
+ L ++ NFK+RI++AAAL+VP + YG + FS + L L+
Sbjct: 1070 QAYKALTSVVMSCKNFKVRIRSAAALSVPGRRAQYGSLEQFSQIWSALVTALQ 1122
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q6P1G0|HEAT6_MOUSE HEAT repeat-containing protein 6 OS=Mus musculus GN=Heatr6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 139/276 (50%), Gaps = 14/276 (5%)
Query: 751 WSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI---DSAL 806
W+ M+ +P LQ ++ +A + I F SL + Q I+ L+ DS
Sbjct: 771 WTAMLSGPLPRALQSAEHPTLQASACDALSSILPEAFSSLPNDKQILCITVLLGLNDSKN 830
Query: 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866
H V++A RA+GV FP + Q + +A+ ++ D ++VR A+W+L N+
Sbjct: 831 H----LVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLQDKSLNVRAKAAWSLGNL 886
Query: 867 CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY 926
D++ +D PS + L+ + + A+ + D DK+KSNAVR LGNL F++
Sbjct: 887 TDTLIVNMD--TPDPSFQDEFSGLLLLKMLQCAIQASTDKDKVKSNAVRALGNLLHFLQP 944
Query: 927 TSSSHPASLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
+ P + +E +QAL+S V +KV+WN C A+ N+F N + L W
Sbjct: 945 SHVERPRF---AEIIEESIQALISTVVNEAAMKVRWNACYAMGNVFKNPALPLGTAPWTS 1001
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYG 1021
+ L ++ NFK+RI++AAAL+VPS YG
Sbjct: 1002 QAYKALTSVVMSCKNFKVRIRSAAALSVPSKRGQYG 1037
|
Mus musculus (taxid: 10090) |
| >sp|A9JRI0|HEAT6_DANRE HEAT repeat-containing protein 6 OS=Danio rerio GN=heatr6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 152/294 (51%), Gaps = 16/294 (5%)
Query: 751 WSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD 809
WSE++ + LQ+ ++T+A + I F L +TQ I+ L+ + +
Sbjct: 775 WSEVLGGPLISALQNEHHPTLQTSACDTLSSILPQAFSQLPDKTQVLCITILL-GLTYSE 833
Query: 810 VASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869
+ V++AA RA+GV FP + + + +A+ D +VR A+W+L N+ D+
Sbjct: 834 NSLVKAAAVRALGVYILFPCLREDVMFVADTANAILTALDDRSPNVRAKAAWSLGNLTDT 893
Query: 870 IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSS 929
+ + + + + L+ ++ SA + D D++KSNAVR LGNL F++
Sbjct: 894 LIVNMQSVGLE--FQEDFSDMLLLNMLRSATKASADKDRVKSNAVRALGNLLHFLQ---- 947
Query: 930 SHPASLGDSRWLERIVQALVSCVTT----GNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
P LG + + +++A+ + + T +KV+WN C AL N F N+ + L W+
Sbjct: 948 --PGHLGKPVFEQPLLEAMRALIDTVRGDATMKVRWNACYALGNAFRNQHLPLGSAVWST 1005
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKS--FSDVVQGLEHILEN 1037
FS L ++ NFK+RI++AAAL+VP++ YG S FS+V + L LE+
Sbjct: 1006 EAFSALSCVVTSCKNFKVRIKSAAALSVPATRECYGDSQQFSEVWRSLAQALEH 1059
|
Danio rerio (taxid: 7955) |
| >sp|Q559R1|Y2456_DICDI Putative uncharacterized protein DDB_G0272456 OS=Dictyostelium discoideum GN=DDB_G0272456 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 18/138 (13%)
Query: 937 DSRWLERIVQALVSCVTTGN-----VKVQWNVCRALSNLFLNETINL----------EDM 981
DS L+RIV +L+ + VKV+WN C AL N+F N+ I +
Sbjct: 1217 DSIILDRIVDSLLKNAQEPSSSFNFVKVKWNACYALGNIFYNQDIEFPNDDNNNNNNNNN 1276
Query: 982 DWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS-SVSDYGKSFSDVVQGLEHILENLGA 1040
W P V+S L+ L++ NFK RI A ++LA P+ S YG + DV + + L N+
Sbjct: 1277 KWLPQVYSTLITLMKSCKNFKTRINATSSLATPTHSRRKYGPFYKDVFEAVLESLSNINT 1336
Query: 1041 DHLSAPSSFKYRVALQKQ 1058
+S S F+YR L+KQ
Sbjct: 1337 --VSDTSEFQYRDNLEKQ 1352
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 18/267 (6%)
Query: 611 ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEV---PAKAWKGH 667
+R S CF+ L S + Y ++ + K L A PEV A+A K
Sbjct: 1383 KRRESVGFCFQYL------SESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAI 1436
Query: 668 VGNTAGFIGEKVVTAAIKVLDE----SLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNI 723
+ +T G+ +K++ A+ LDE + R G LD L ++ I +
Sbjct: 1437 MAHTTGYGVKKLIPVAVSNLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGV 1496
Query: 724 SSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITS 783
+ E + D ES K F G + I+K +P++LQ I + +
Sbjct: 1497 LNDSHKEVRKAAD--ESLKRF--GEVIRNPEIQKLVPVLLQAIGDPTKYTE-EALDSLIQ 1551
Query: 784 SVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843
+ F + +I +I +HD A+++ AC+ +G ++ + + I
Sbjct: 1552 TQFVHYIDGPSLALIIHIIHRGMHDRSANIKRKACKIVGNMAILVDTKDLIPYLQQLIDE 1611
Query: 844 VEINTHDPLVSVRITASWALANICDSI 870
VEI DP+ + R TA+ AL + + +
Sbjct: 1612 VEIAMVDPVPNTRATAARALGALVERL 1638
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1127 | ||||||
| 225426498 | 1207 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.915 | 0.610 | 0.0 | |
| 297742482 | 1176 | unnamed protein product [Vitis vinifera] | 0.976 | 0.935 | 0.620 | 0.0 | |
| 255555859 | 1169 | conserved hypothetical protein [Ricinus | 0.977 | 0.942 | 0.605 | 0.0 | |
| 449456458 | 1190 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.926 | 0.534 | 0.0 | |
| 449507236 | 1190 | PREDICTED: uncharacterized LOC101212003 | 0.975 | 0.923 | 0.532 | 0.0 | |
| 186517327 | 1165 | armadillo/beta-catenin-like repeat-conta | 0.979 | 0.947 | 0.514 | 0.0 | |
| 297801896 | 1179 | hypothetical protein ARALYDRAFT_490568 [ | 0.975 | 0.932 | 0.510 | 0.0 | |
| 110737352 | 733 | hypothetical protein [Arabidopsis thalia | 0.606 | 0.931 | 0.55 | 0.0 | |
| 413917399 | 1050 | hypothetical protein ZEAMMB73_643875 [Ze | 0.807 | 0.866 | 0.441 | 0.0 | |
| 222639926 | 1094 | hypothetical protein OsJ_26064 [Oryza sa | 0.909 | 0.936 | 0.410 | 0.0 |
| >gi|225426498|ref|XP_002271527.1| PREDICTED: uncharacterized protein LOC100265120 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1387 bits (3590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 735/1204 (61%), Positives = 880/1204 (73%), Gaps = 99/1204 (8%)
Query: 10 VRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEVTSDLLFLLE 69
VRSWRTAFLTLRDET + +V LL +LFSN SL+ AA DLPPHE+ SD++FL+E
Sbjct: 15 VRSWRTAFLTLRDETLASPPPSAVLNLLQHLLFSNSQSLIAAAPDLPPHEIVSDIMFLME 74
Query: 70 LVSNAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINFFLVKAAT 129
LV G+D++LTF CHL+H + QRVS E NS S+ L+L++F +++ FL KA +
Sbjct: 75 LVPTCS-DAGDDTSLTFISMCHLIHDVCQRVSLEINSPSWALMLDTFGTMVESFLGKAGS 133
Query: 130 K----SSATRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYN 185
K +A R K VM+C+ET R L +VY K S E V LVKF+L + CSHAE +
Sbjct: 134 KRVFSENAARIKAVMECVETVRRLVSVYHRKCSLSENVQLVKFLLRIVTCSHAELYSSLH 193
Query: 186 ASATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVID 245
+S QR E GKR+ RY+SLWEVQ ++ TM+ FSR GSS P DIWQSTIEVLRKV+D
Sbjct: 194 SSGNQRYAPEIGKRIPRYNSLWEVQTIAFTMITAVFSRDGSSFPGDIWQSTIEVLRKVMD 253
Query: 246 VIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDH-------------VSGFVTA 292
+ASKSVL ED+++S RFY+SLL+CLHVVLT+PK LSDH V+GFV A
Sbjct: 254 ALASKSVLVEDNVMS-RFYTSLLHCLHVVLTNPKGPLSDHPLSFTLSAFISLQVAGFVAA 312
Query: 293 LRLFFVYGLTSSPQFTFPAV----GHKEVSPNLPSEEPKKIDHTPYRPPHLRKKDRLNIK 348
LR+FF+YGLT+ FP G V+ L S EP K D PYRPPHLRKK+ I+
Sbjct: 313 LRIFFIYGLTNRTALAFPGAVQRQGLSSVNHGLSSTEPTKTDSGPYRPPHLRKKNGTGIR 372
Query: 349 QSKPQDHRIFSDDDSFTMNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRAD 408
Q K QD + SD +S ++ SSDSDYSD+DGS KD+DS++ SK R+AA+ C+QDLC+AD
Sbjct: 373 QHKAQDSQSSSDHESSMVDLTSSDSDYSDTDGSGKDSDSLRISKARLAAIACIQDLCQAD 432
Query: 409 PKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQ 468
PKSFT QWT++LPTNDVL+ RK+EATLMTCLLFDP LKAR+ASA+TLAAMLDGPS+VFLQ
Sbjct: 433 PKSFTAQWTMILPTNDVLQLRKYEATLMTCLLFDPYLKARIASAATLAAMLDGPSSVFLQ 492
Query: 469 VAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPY 528
VAEYKES KCGSF LS+S G I+MQLH GI+YLIQ ETH LLASLFKILM LIS TPY
Sbjct: 493 VAEYKESTKCGSFTALSSSLGQILMQLHAGILYLIQHETHGGLLASLFKILMLLISSTPY 552
Query: 529 SRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEE 588
+RMP EL+P +IISLRAR+EEGFP K+DQT LL A+SCLTAALSTSP+ +VK+MFLEE
Sbjct: 553 ARMPEELLPTVIISLRARVEEGFPFKSDQTSLLAVALSCLTAALSTSPSSPKVKEMFLEE 612
Query: 589 ISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIV 648
ISAG + VLFT+ Q +E+L P I FE+LQALRAVSHNYPNIM + W+QVSTIV
Sbjct: 613 ISAGFAGAQGKPSVLFTIFQYAEKLTCPTISFEALQALRAVSHNYPNIMVACWEQVSTIV 672
Query: 649 FKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKL 708
+ L+ A+PEVPA+ WKGH GNT G IGEK +TAAIKVLDE LRAISG+KGTE++LDD+L
Sbjct: 673 YGFLR-ATPEVPARQWKGHSGNTVGSIGEKTLTAAIKVLDECLRAISGYKGTEEILDDRL 731
Query: 709 LDNPFTSDCIRIKNISSAPLYEQESS-EDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS 767
LD PFTSDC+R K ISSAP Y E++ E + KA +SG EQW E +EKH+PLIL H
Sbjct: 732 LDTPFTSDCMRQKKISSAPSYVLENTKETTGDEPKACESGGEQWCEAMEKHIPLILWHTF 791
Query: 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF 827
MVR A+VTCFAGITSSVFFSL KE Q+FI+SSLI++A++D+V SVRSA CRAIGVI+CF
Sbjct: 792 PMVRAASVTCFAGITSSVFFSLTKEKQDFILSSLINAAVNDEVPSVRSAGCRAIGVITCF 851
Query: 828 PQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887
Q+SQSAE + KFIHAVE NT DPLV VRITASWALANICDS+RHCI DF+ S +
Sbjct: 852 LQISQSAETLQKFIHAVESNTRDPLVLVRITASWALANICDSLRHCISDFS---SERHSV 908
Query: 888 NSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS------------------- 928
S L+A L E AL LTKDGDKIKSNAVR LGNLSRF++Y S
Sbjct: 909 GSQLVALLIECALRLTKDGDKIKSNAVRALGNLSRFLQYRSPAGIHDKPVNCAGLSTPIN 968
Query: 929 --------------------SSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968
S+ P LGDS WLER+VQA +SCVTTGNVKVQWNVC ALS
Sbjct: 969 SVEVLSSSTNKKNGHRFVSNSNQPLPLGDSSWLERMVQAFLSCVTTGNVKVQWNVCHALS 1028
Query: 969 NLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVV 1028
NLFLNET+ L+DMDWA SVFSILLLLLRDSSNFKIRIQAAAAL+VP+S+ DYG+SFSDVV
Sbjct: 1029 NLFLNETLRLQDMDWASSVFSILLLLLRDSSNFKIRIQAAAALSVPASILDYGRSFSDVV 1088
Query: 1029 QGLEHILENLGADHLSAPSSFKYRVALQKQ--------------------------KSSF 1062
QGLEHILENLG D +S PSSFKYRVAL+KQ K++F
Sbjct: 1089 QGLEHILENLGLDQISTPSSFKYRVALEKQLTSTMLHVLSLASSSDHQPLKDFLVKKAAF 1148
Query: 1063 LEEWFKVLCSSLGESTTHLENENNSVGNQKKEMISKAIRSLIEVYEGRKQFAVAKKFEMM 1122
LEEWFK LCSSLGE++T E ++KKEMIS+A++SL EVY+ R A+A+KFE +
Sbjct: 1149 LEEWFKALCSSLGETSTQPE------ADRKKEMISQAVQSLTEVYKSRNHHAIAQKFENL 1202
Query: 1123 DSGI 1126
+ I
Sbjct: 1203 TNNI 1206
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742482|emb|CBI34631.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1379 bits (3569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1171 (62%), Positives = 877/1171 (74%), Gaps = 71/1171 (6%)
Query: 10 VRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEVTSDLLFLLE 69
VRSWRTAFLTLRDET + +V LL +LFSN SL+ AA DLPPHE+ SD++FL+E
Sbjct: 22 VRSWRTAFLTLRDETLASPPPSAVLNLLQHLLFSNSQSLIAAAPDLPPHEIVSDIMFLME 81
Query: 70 LVSNAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINFFLVKAAT 129
LV G+D++LTF CHL+H + QRVS E NS S+ L+L++F +++ FL KA +
Sbjct: 82 LVPTCSDA-GDDTSLTFISMCHLIHDVCQRVSLEINSPSWALMLDTFGTMVESFLGKAGS 140
Query: 130 K----SSATRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYN 185
K +A R K VM+C+ET R L +VY K S E V LVKF+L + CSHAE +
Sbjct: 141 KRVFSENAARIKAVMECVETVRRLVSVYHRKCSLSENVQLVKFLLRIVTCSHAELYSSLH 200
Query: 186 ASATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVID 245
+S QR E GKR+ RY+SLWEVQ ++ TM+ FSR GSS P DIWQSTIEVLRKV+D
Sbjct: 201 SSGNQRYAPEIGKRIPRYNSLWEVQTIAFTMITAVFSRDGSSFPGDIWQSTIEVLRKVMD 260
Query: 246 VIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTSSP 305
+ASKSVL ED+++S RFY+SLL+CLHVVLT+PK LSDHV+GFV ALR+FF+YGLT+
Sbjct: 261 ALASKSVLVEDNVMS-RFYTSLLHCLHVVLTNPKGPLSDHVAGFVAALRIFFIYGLTNRT 319
Query: 306 QFTFPAV----GHKEVSPNLPSEEPKKIDHTPYRPPHLRKKDRLNIKQSKPQDHRIFSDD 361
FP G V+ L S EP K D PYRPPHLRKK+ I+Q K QD + SD
Sbjct: 320 ALAFPGAVQRQGLSSVNHGLSSTEPTKTDSGPYRPPHLRKKNGTGIRQHKAQDSQSSSDH 379
Query: 362 DSFTMNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTILLP 421
+S ++ SSDSDYSD+DGS KD+DS++ SK R+AA+ C+QDLC+ADPKSFT QWT++LP
Sbjct: 380 ESSMVDLTSSDSDYSDTDGSGKDSDSLRISKARLAAIACIQDLCQADPKSFTAQWTMILP 439
Query: 422 TNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSF 481
TNDVL+ RK+EATLMTCLLFDP LKAR+ASA+TLAAMLDGPS+VFLQVAEYKES KCGSF
Sbjct: 440 TNDVLQLRKYEATLMTCLLFDPYLKARIASAATLAAMLDGPSSVFLQVAEYKESTKCGSF 499
Query: 482 MPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLII 541
LS+S G I+MQLH GI+YLIQ ETH LLASLFKILM LIS TPY+RMP EL+P +II
Sbjct: 500 TALSSSLGQILMQLHAGILYLIQHETHGGLLASLFKILMLLISSTPYARMPEELLPTVII 559
Query: 542 SLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSG 601
SLRAR+EEGFP K+DQT LL A+SCLTAALSTSP+ +VK+MFLEEISAG +
Sbjct: 560 SLRARVEEGFPFKSDQTSLLAVALSCLTAALSTSPSSPKVKEMFLEEISAGFAGAQGKPS 619
Query: 602 VLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPA 661
VLFT+ Q +E+L P I FE+LQALRAVSHNYPNIM + W+QVSTIV+ L+ A+PEVPA
Sbjct: 620 VLFTIFQYAEKLTCPTISFEALQALRAVSHNYPNIMVACWEQVSTIVYGFLR-ATPEVPA 678
Query: 662 KAWKGHVGNT-AGF-IGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIR 719
+ WKGH GNT F +GE +++A++ VLDE LRAISG+KGTE++LDD+LLD PFTSDC+R
Sbjct: 679 RQWKGHSGNTIENFGVGECLLSASV-VLDECLRAISGYKGTEEILDDRLLDTPFTSDCMR 737
Query: 720 IKNISSAPLYEQESS-EDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCF 778
K ISSAP Y E++ E + KA +SG EQW E +EKH+PLIL H MVR A+VTCF
Sbjct: 738 QKKISSAPSYVLENTKETTGDEPKACESGGEQWCEAMEKHIPLILWHTFPMVRAASVTCF 797
Query: 779 AGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838
AGITSSVFFSL KE Q+FI+SSLI++A++D+V SVRSA CRAIGVI+CF Q+SQSAE +
Sbjct: 798 AGITSSVFFSLTKEKQDFILSSLINAAVNDEVPSVRSAGCRAIGVITCFLQISQSAETLQ 857
Query: 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTES 898
KFIHAVE NT DPLV VRITASWALANICDS+RHCI DF S+ ++A L E
Sbjct: 858 KFIHAVESNTRDPLVLVRITASWALANICDSLRHCISDF-------SSERHSVVALLIEC 910
Query: 899 ALNLTKDGDKIKSNAVRGLGNLSRFVKYTS-----------------SSHPASLGDSRWL 941
AL LTKDGDKIKSNAVR LGNLSRF++Y S S+ P LGDS WL
Sbjct: 911 ALRLTKDGDKIKSNAVRALGNLSRFLQYRSPAGIHDKPKNGHRFVSNSNQPLPLGDSSWL 970
Query: 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNF 1001
ER+VQA +SCVTTGNVKVQWNVC ALSNLFLNET+ L+DMDWA SVFSILLLLLRDSSNF
Sbjct: 971 ERMVQAFLSCVTTGNVKVQWNVCHALSNLFLNETLRLQDMDWASSVFSILLLLLRDSSNF 1030
Query: 1002 KIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ--- 1058
KIRIQAAAAL+VP+S+ DYG+SFSDVVQGLEHILENLG D +S PSSFKYRVAL+KQ
Sbjct: 1031 KIRIQAAAALSVPASILDYGRSFSDVVQGLEHILENLGLDQISTPSSFKYRVALEKQLTS 1090
Query: 1059 -----------------------KSSFLEEWFKVLCSSLGESTTHLENENNSVGNQKKEM 1095
K++FLEEWFK LCSSLGE++T E ++KKEM
Sbjct: 1091 TMLHVLSLASSSDHQPLKDFLVKKAAFLEEWFKALCSSLGETSTQPE------ADRKKEM 1144
Query: 1096 ISKAIRSLIEVYEGRKQFAVAKKFEMMDSGI 1126
IS+A++SL EVY+ R A+A+KFE + + I
Sbjct: 1145 ISQAVQSLTEVYKSRNHHAIAQKFENLTNNI 1175
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555859|ref|XP_002518965.1| conserved hypothetical protein [Ricinus communis] gi|223541952|gb|EEF43498.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1323 bits (3424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 709/1170 (60%), Positives = 868/1170 (74%), Gaps = 68/1170 (5%)
Query: 10 VRSWRTAFLTLRDET----SSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEVTSDLL 65
+R WRTAFLTLRDET SV++LLH+++FS HSL+ AA LPPHEVTSDLL
Sbjct: 14 IRPWRTAFLTLRDETLTSSPKSESKKSVAELLHNLIFSQSHSLISAAPQLPPHEVTSDLL 73
Query: 66 FLLELVSNAPPRDGEDSTLTFTHTCHLVHGIL--QRVSFEFNSSSFNLILNSFQSIINFF 123
FLL+L +N+ + +D FT+ L+H I QRVS + SSS++L LNSF +I++FF
Sbjct: 74 FLLDLAANSSLQH-QDLDSVFTNISLLMHEICLSQRVSLQITSSSWHLFLNSFSTILHFF 132
Query: 124 LVKAATKSSATRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCL 183
L AAT KP M+ + T R L N+ KFS + +HLV F++ E S+ + V
Sbjct: 133 LCNAAT------LKPAMESIYTVRHLVNLLHHKFSLSDDIHLVNFLIRVAEFSYVKLVHS 186
Query: 184 YNASATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKV 243
SA Q S A +GKRL +Y++LWEVQ + TMLG+AF R GSS P D+WQS IEVLRKV
Sbjct: 187 SYTSADQ-SAASTGKRLSKYTTLWEVQTVVFTMLGDAFVRVGSSFPADVWQSIIEVLRKV 245
Query: 244 IDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTS 303
+D +ASKS+L ED ++S RFY+SLLNCLH+VLT+PK SL DHVSGFV LR+FF+YGL
Sbjct: 246 MDPLASKSLLFEDVVMS-RFYASLLNCLHLVLTNPKGSLLDHVSGFVATLRMFFIYGLAG 304
Query: 304 SPQFTFPA--VGHKEVSP---NLPSEEPKKIDHTPYRPPHLRKKDRLNIKQSKPQDHRIF 358
F PA + KE S L EEPK+ DH PYRPPHLRKK+ +++KQ K QD F
Sbjct: 305 RTLFKIPANHLKEKEFSAMCLKLTLEEPKRKDHAPYRPPHLRKKESMHMKQPKAQDSLGF 364
Query: 359 SDDDSFTMNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTI 418
SD +S + +F+SSDSD SDSDG+ K+ DS+QSSKVRV+A+VC+QDLC+ADPKSFT+QWT+
Sbjct: 365 SDHESSSADFISSDSDCSDSDGAGKEIDSIQSSKVRVSAIVCIQDLCQADPKSFTSQWTM 424
Query: 419 LLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKC 478
LLPTNDVL+PRK EATLMTCLLFDP L+ R+ASAS LA MLDGPS+VFLQVAEYKE+ +
Sbjct: 425 LLPTNDVLQPRKSEATLMTCLLFDPYLRVRIASASALAVMLDGPSSVFLQVAEYKETTRW 484
Query: 479 GSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPN 538
GSFM LS+S G I+MQLH GI+YLIQ ET+ R+L SLFKIL+ L+S TPY+RMPGEL+P
Sbjct: 485 GSFMALSSSLGRILMQLHTGILYLIQHETYSRMLPSLFKILILLLSSTPYARMPGELLPT 544
Query: 539 LIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDK 598
+I SL +R E+GFP ++DQTGLL A++C +AALST+P VKQM L+EIS G E +K
Sbjct: 545 VITSLLSRNEKGFPFRSDQTGLLATAVNCFSAALSTTPPSPHVKQMLLDEISTGVTEAEK 604
Query: 599 RSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPE 658
RSGVL TL Q SE + ICFE+LQALRA HNYPNI + W +VS+I IL+ A+ E
Sbjct: 605 RSGVLSTLFQYSEHPMNSTICFEALQALRAAIHNYPNIAFACWGRVSSIFSNILRVATLE 664
Query: 659 VPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCI 718
P +AWKGH+G+ GF GEKV+TAAIKVLDE LRA SGFKGTED DDKL D PFTSDCI
Sbjct: 665 TPIRAWKGHMGDNVGFTGEKVITAAIKVLDECLRATSGFKGTED-PDDKLSDTPFTSDCI 723
Query: 719 RIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCF 778
R K +SSAP YE+ES+ D ++ K F+ GSE WSE IEKH+P +L+H SSMVRTA+VTCF
Sbjct: 724 RTKKVSSAPSYERESTVDTEQELKVFELGSECWSETIEKHIPALLRHTSSMVRTASVTCF 783
Query: 779 AGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838
AGITS+VF SL KE+QEF++SSLI++ H++V VRSAACRAIGVISCFP++S SAEI+
Sbjct: 784 AGITSTVFISLTKESQEFVVSSLINAGGHNEVPPVRSAACRAIGVISCFPRMSHSAEILA 843
Query: 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTES 898
KFI+ +EINT DPL+SVRITASWALANIC+S+RHC+DDF + S D+NA +M L E
Sbjct: 844 KFIYVIEINTRDPLISVRITASWALANICESLRHCLDDFPLEKSADTNAKPQVMEFLAEC 903
Query: 899 ALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSH--------------PASLGDSRWLERI 944
A +LTKDGDK+KSNAVR LGNLSR ++YTS H S GD R LER+
Sbjct: 904 AFHLTKDGDKVKSNAVRALGNLSRLIRYTSGKHVICNVVKDISNFNYQTSSGDPRLLERM 963
Query: 945 VQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIR 1004
VQA +SCVTTGNVKVQWNVC ALSNLFLNET+ L+DMDWAPSVFSILLLLLRDSSNFKIR
Sbjct: 964 VQAFLSCVTTGNVKVQWNVCHALSNLFLNETLRLQDMDWAPSVFSILLLLLRDSSNFKIR 1023
Query: 1005 IQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ------ 1058
IQAAAALAVP+SV DYG+SFSD+VQGLEH+ ENLG+D +S PSSFKYRVAL KQ
Sbjct: 1024 IQAAAALAVPASVLDYGESFSDIVQGLEHVAENLGSDKISTPSSFKYRVALDKQVTSTLL 1083
Query: 1059 --------------------KSSFLEEWFKVLCSSLGESTTHLENENNSVGNQ--KKEMI 1096
K+ FLEEW KVLC SLGE++ E VGN KK++I
Sbjct: 1084 HVVSLASSSDNQLLKDFLVKKAPFLEEWLKVLCFSLGETSGKPE-----VGNSIAKKQVI 1138
Query: 1097 SKAIRSLIEVYEGRKQFAVAKKFEMMDSGI 1126
S+AI SLI+V+E + A+A+KFE ++ I
Sbjct: 1139 SEAINSLIKVFESKNHHAIAQKFEKLEESI 1168
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456458|ref|XP_004145966.1| PREDICTED: uncharacterized protein LOC101212003 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/1193 (53%), Positives = 827/1193 (69%), Gaps = 91/1193 (7%)
Query: 10 VRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEVTSDLLFLLE 69
VRSWRTAFLTLRDE+ S S S+SQLL+D +FS+ SL+ AA LPP EV+SDLLFLLE
Sbjct: 12 VRSWRTAFLTLRDESISSST--SISQLLYDTIFSHSDSLIAAARYLPPPEVSSDLLFLLE 69
Query: 70 LVSNAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINFFLVKAAT 129
L ++A +D L F HL+HGI +VS EF+SSS+NL+L F + L K
Sbjct: 70 LATSAAD-SVQDIALIFADIIHLIHGISYQVSLEFSSSSWNLLLRYFGDVTQILLGKLNF 128
Query: 130 KSSATRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYNASAT 189
+ +PV++ LE R + ++ Q KF P E + L KF+L + S + + L N+
Sbjct: 129 PENYALIRPVLESLEIVRHVVSIQQRKFLPAEDIQLSKFLLSVIADSQSAILPLSNSIIR 188
Query: 190 QRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVIDVIAS 249
TAE K + + +SLW+VQA++ +L +A + GS PVD+W+STI+V+RK++D +AS
Sbjct: 189 HGCTAEVVKSVPKCNSLWDVQAVAFDLLSQAITSLGSYFPVDVWKSTIQVIRKLMDFLAS 248
Query: 250 KSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTSSPQFTF 309
+VL ED ++S R+Y SLL CLH+V+ +PK SLSDHVS FV ALR+FF YG ++ P
Sbjct: 249 TNVLVEDKMMS-RYYLSLLRCLHLVIAEPKCSLSDHVSAFVAALRMFFAYGFSNRPLLAC 307
Query: 310 PAVGHKEVSPNLPS-----EEPKKIDHTPYRPPHLRKKDRLNIKQSKPQDHRIFSDDDSF 364
+VG++ P+L S EEPKK +++PYRPPH+R+++ L KQ+ Q+ + S
Sbjct: 308 -SVGNQGKEPSLTSTKSSLEEPKKDNYSPYRPPHMRRRENLTKKQASVQNAQ-----SSM 361
Query: 365 TMNFMS----SDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTILL 420
+ +++ S DSDG +D D +Q+ KVRVAA++C+QDLC+ADPK+FT+QWT+LL
Sbjct: 362 AVEYLNCDSISSDSDHDSDGPGRDADIIQNGKVRVAAILCIQDLCQADPKAFTSQWTLLL 421
Query: 421 PTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGS 480
PT DVL PRKF+ATLMTCLLFDP LK ++ASA+ L MLD +++ LQ+AEY++ KCGS
Sbjct: 422 PTRDVLLPRKFDATLMTCLLFDPSLKVQIASAAALVVMLDRTTSISLQIAEYRDPAKCGS 481
Query: 481 FMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLI 540
FMPLS S G I+MQLH G++YLIQR TH RLL LFKIL+ LIS TPY RMP EL+PN++
Sbjct: 482 FMPLSISLGQILMQLHTGVLYLIQRSTHGRLLTILFKILLHLISSTPYPRMPEELLPNMV 541
Query: 541 ISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRS 600
+L+A IEEGF ++DQT LL AAI CL ALSTS + VK+M ++IS K +
Sbjct: 542 KALQATIEEGFSFRSDQTDLLAAAIGCLNVALSTSQSSPYVKEMLSKQISTA----QKGN 597
Query: 601 GVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVP 660
VL LLQ SE+L +P IC E+LQAL+AVSHNYP+IM ++W+QVS++V L A+PEV
Sbjct: 598 SVLVILLQYSEQLTNPTICIEALQALKAVSHNYPHIMFAFWEQVSSVVSNFLHEAAPEVS 657
Query: 661 AKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRI 720
W+ N+ G IGEKV+TAA+KVLDE LRAISGFKGTEDLLDD LLD+PFT DCIR+
Sbjct: 658 TGQWRVQSRNSVGIIGEKVITAAVKVLDECLRAISGFKGTEDLLDDNLLDSPFTLDCIRM 717
Query: 721 KNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAG 780
K +SSAP YE ++ ++ +S + +G +QW E+IEKH+P L H S+MVR A+VTCFAG
Sbjct: 718 KKVSSAPSYELKNLDETIDSPEDVCAGMKQWCEVIEKHLPRSLVHSSAMVRAASVTCFAG 777
Query: 781 ITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840
ITSSVF SL KE +++I+SS++++A+HD+V SVRSAACRAIGV+SCFPQVSQSAEI+DKF
Sbjct: 778 ITSSVFSSLSKEKEDYILSSVVNAAVHDEVPSVRSAACRAIGVVSCFPQVSQSAEILDKF 837
Query: 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESAL 900
IHAVEINT D LVSVR+TASWALANIC+SIR +D + DS SH++ L ES+L
Sbjct: 838 IHAVEINTRDSLVSVRVTASWALANICESIRRFFEDSPSRQPTDSVEPSHILTLLIESSL 897
Query: 901 NLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPA--------------------------- 933
L DGDKIKSNAVR LGNLSR +K++ P
Sbjct: 898 RLANDGDKIKSNAVRALGNLSRLIKFSCLLSPCERPRSNSGLSSVANNSEDLFSKDDSKV 957
Query: 934 -------------SLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED 980
S S +LERIVQA +S +TTGNVKVQWNVC ALSNLFLNET+ L+D
Sbjct: 958 NLGCTSKNLNDTNSFYSSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQD 1017
Query: 981 MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGA 1040
+D S+F+ILLLLLRDSSNFK+RIQAAAAL+VPSSV YGKSF DVVQGLEH +ENL +
Sbjct: 1018 LDRVSSLFNILLLLLRDSSNFKVRIQAAAALSVPSSVYGYGKSFPDVVQGLEHTIENLES 1077
Query: 1041 DHLSAPSSFKYRVALQKQ--------------------------KSSFLEEWFKVLCSSL 1074
+H+ AP SFKY+VAL+KQ K++FLEEWFK LCSS+
Sbjct: 1078 NHILAP-SFKYKVALEKQLISTMLHVLSLAASTDHQPLKDFLVKKATFLEEWFKALCSSV 1136
Query: 1075 GE-STTHLENENNSVGNQKKEMISKAIRSLIEVYEGRKQFAVAKKFEMMDSGI 1126
GE S ++ENNS NQK+EMI KA+RSLIEVY Q A++++FE + GI
Sbjct: 1137 GERSNWRGDDENNSTNNQKREMILKALRSLIEVYTSSNQSAISQRFENLVKGI 1189
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507236|ref|XP_004162972.1| PREDICTED: uncharacterized LOC101212003 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/1190 (53%), Positives = 824/1190 (69%), Gaps = 91/1190 (7%)
Query: 13 WRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEVTSDLLFLLELVS 72
WRTAFLTLRDE+ S S S+SQLL+D +FS+ SL+ AA LPP EV+SDLLFLLEL +
Sbjct: 15 WRTAFLTLRDESISSST--SISQLLYDTIFSHSDSLIAAARYLPPPEVSSDLLFLLELAT 72
Query: 73 NAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINFFLVKAATKSS 132
+A +D L F HL+HGI +VS EF+SSS+NL+L F + L K +
Sbjct: 73 SAAD-SVQDIALIFADIIHLIHGISYQVSLEFSSSSWNLLLRYFGDVTQILLGKLNFPEN 131
Query: 133 ATRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYNASATQRS 192
+PV++ LE R + ++ Q KF P E + L KF+L + S + + L N+
Sbjct: 132 YALIRPVLESLEIVRHVVSIQQRKFLPAEDIQLSKFLLSVIADSQSAILPLSNSIIRHGC 191
Query: 193 TAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVIDVIASKSV 252
TAE K + + +SLW+VQA++ +L +A + GS PVD+W+STI+V+RK++D +AS +V
Sbjct: 192 TAEVVKSVPKCNSLWDVQAVAFDLLSQAITSLGSYFPVDVWKSTIQVIRKLMDFLASTNV 251
Query: 253 LGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTSSPQFTFPAV 312
L ED ++S R+Y SLL CLH+V+ +PK SLSDHVS FV ALR+FF YG ++ P +V
Sbjct: 252 LVEDKMMS-RYYLSLLRCLHLVIAEPKCSLSDHVSAFVAALRMFFAYGFSNRPLLAC-SV 309
Query: 313 GHKEVSPNLPS-----EEPKKIDHTPYRPPHLRKKDRLNIKQSKPQDHRIFSDDDSFTMN 367
G++ P+L S EEPKK +++PYRPPH+R+++ L KQ+ Q+ + S +
Sbjct: 310 GNQGKEPSLTSTKSSLEEPKKDNYSPYRPPHMRRRENLTKKQASVQNAQ-----SSMAVE 364
Query: 368 FMS----SDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTILLPTN 423
+++ S DSDG +D D +Q+ KVRVAA++C+QDLC+ADPK+FT+QWT+LLPT
Sbjct: 365 YLNCDSISSDSDHDSDGPGRDADIIQNGKVRVAAILCIQDLCQADPKAFTSQWTLLLPTR 424
Query: 424 DVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMP 483
DVL PRKF+ATLMTCLLFDP LK ++ASA+ L MLD +++ LQ+AEY++ KCGSFMP
Sbjct: 425 DVLLPRKFDATLMTCLLFDPSLKVQIASAAALVVMLDRTTSISLQIAEYRDPAKCGSFMP 484
Query: 484 LSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISL 543
LS S G I+MQLH G++YLIQR TH RLL LFKIL+ LIS TPY RMP EL+PN++ +L
Sbjct: 485 LSISLGQILMQLHTGVLYLIQRSTHGRLLTILFKILLHLISSTPYPRMPEELLPNMVKAL 544
Query: 544 RARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVL 603
+A IEEGF ++DQT LL AAI CL ALSTS + VK+M ++IS K + VL
Sbjct: 545 QATIEEGFSFRSDQTDLLAAAIGCLNVALSTSQSSPYVKEMLSKQISTA----QKGNSVL 600
Query: 604 FTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKA 663
LLQ SE+L +P IC E+LQAL+AVSHNYP+IM ++W+QVS++V L A+PEV
Sbjct: 601 VILLQYSEQLTNPTICIEALQALKAVSHNYPHIMFAFWEQVSSVVSNFLHEAAPEVSTGQ 660
Query: 664 WKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNI 723
W+ N+ G IGEKV+TAA+KVLDE LRAISGFKGTEDLLDD LLD+PFT DCIR+K +
Sbjct: 661 WRVQSRNSVGIIGEKVITAAVKVLDECLRAISGFKGTEDLLDDNLLDSPFTLDCIRMKKV 720
Query: 724 SSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITS 783
SSAP YE ++ ++ +S + +G +QW E+IEKH+P L H S+MVR A+VTCFAGITS
Sbjct: 721 SSAPSYELKNLDETIDSPEDVCAGMKQWCEVIEKHLPRSLVHSSAMVRAASVTCFAGITS 780
Query: 784 SVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843
SVF SL KE +++I+S+++++A+HD+V SVRSAACRAIGV+SCFPQVSQSAEI+DKFIHA
Sbjct: 781 SVFSSLSKEKEDYILSTVVNAAVHDEVPSVRSAACRAIGVVSCFPQVSQSAEILDKFIHA 840
Query: 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT 903
VEINT D LVSVR+TASWALANIC+SIR +D + DS SH++ L ES+L L
Sbjct: 841 VEINTRDSLVSVRVTASWALANICESIRRFFEDSPSRQPTDSVEPSHILTLLIESSLRLA 900
Query: 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPA------------------------------ 933
DGDKIKSNAVR LGNLSR +K++ P
Sbjct: 901 NDGDKIKSNAVRALGNLSRLIKFSCLLSPCERPRSNSGLSSVANNSEDLFSKDDSKVNLG 960
Query: 934 ----------SLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983
S S +LERIVQA +S +TTGNVKVQWNVC ALSNLFLNET+ L+D+D
Sbjct: 961 CTSKNLNDTNSFYSSSFLERIVQAFISGITTGNVKVQWNVCHALSNLFLNETLRLQDLDR 1020
Query: 984 APSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHL 1043
S+F+ILLLLLRDSSNFK+RIQAAAAL+VPSSV YGKSF DVVQGLEH +ENL ++H+
Sbjct: 1021 VSSLFNILLLLLRDSSNFKVRIQAAAALSVPSSVYGYGKSFPDVVQGLEHTIENLESNHI 1080
Query: 1044 SAPSSFKYRVALQKQ--------------------------KSSFLEEWFKVLCSSLGE- 1076
AP SFKY+VAL+KQ K++FLEEWFK LCSS+GE
Sbjct: 1081 LAP-SFKYKVALEKQLISTMLHVLSLAASTDHQPLKDFLVKKATFLEEWFKALCSSVGER 1139
Query: 1077 STTHLENENNSVGNQKKEMISKAIRSLIEVYEGRKQFAVAKKFEMMDSGI 1126
S ++ENNS NQK+EMI KA+RSLIEVY Q A++++FE + GI
Sbjct: 1140 SNWRGDDENNSTNNQKREMILKALRSLIEVYTSSNQSAISQRFENLVKGI 1189
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186517327|ref|NP_195525.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332661479|gb|AEE86879.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/1186 (51%), Positives = 790/1186 (66%), Gaps = 82/1186 (6%)
Query: 1 MATSSATTAVRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEV 60
M T++A+++V WRTAFL+LRDE S+ + P V LL D+LFS HSL+ A S LP HE+
Sbjct: 1 MFTAAASSSVGRWRTAFLSLRDEIST-TPPPPVPLLLEDLLFSQSHSLISAVSHLPLHEL 59
Query: 61 TSDLLFLLELVSNAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSII 120
TSD LFLL+LVS A DG D HTC L+H + R+ F+ NSSS+ L+L+SF S++
Sbjct: 60 TSDCLFLLDLVSKA---DGPDWIPVSRHTCQLIHDVCARLLFQLNSSSWPLLLHSFASVL 116
Query: 121 NFFLVKAATKSSAT-----RFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALEC 175
F L + S + R +PV+QC ET R L ++ E +HLVKF++ +
Sbjct: 117 EFLLRQPMPSSPYSAAYFSRIEPVIQCFETLRRLAPMHP------ENIHLVKFLVRVVPL 170
Query: 176 SHAEFVCLYNASATQRS-TAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQ 234
H + V Y S S T K+L + + LW+ AL+ M G AFS + S P D+ Q
Sbjct: 171 LHQDLVLSYGFSNQDPSPTLLVEKKLPQQNRLWDSMALAFDMFGRAFSLSESLFPTDVSQ 230
Query: 235 STIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALR 294
T+EVLRKV+DV+ASK L ED + R+ +L L P S + + +LR
Sbjct: 231 CTLEVLRKVMDVLASKGQLVEDRFMW-RYMPLVLWRLQFT---PFFLGSIRLVALLASLR 286
Query: 295 LFFVYGLTSSPQFTFPAVGHKEVSPN-----LPSEEPKKIDHTPYRPPHLRKKDRLNIKQ 349
+FF +GLT PQ + V H + N L S K +TPYRPPHLRK+D LN +Q
Sbjct: 287 MFFCFGLTGPPQLSVSDVVHNDKHLNVKLSPLISGVSKNAKNTPYRPPHLRKRDDLNTRQ 346
Query: 350 SKPQDHRIFSDDDSFTMNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADP 409
R S DS + + +SSDSD+SDSDGS+ D+ QSSKVR+AA+VC+QDLC+AD
Sbjct: 347 PVSSSWRRLSAHDSGSSDVISSDSDFSDSDGSVPDSYFAQSSKVRIAAIVCIQDLCQADS 406
Query: 410 KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQV 469
KSFTTQW L PT+DVL+PRKFEATLMTCLLFDP LK R+ASAS LA M+DGPS++FLQV
Sbjct: 407 KSFTTQWVTLFPTSDVLKPRKFEATLMTCLLFDPHLKVRIASASALATMMDGPSSIFLQV 466
Query: 470 AEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYS 529
AEYKES K GSFMPLS S G I+MQLH GI++LI + H RLL LFKIL+ LIS TPYS
Sbjct: 467 AEYKESTKYGSFMPLSNSLGLILMQLHTGILHLIHSDNHGRLLIQLFKILLLLISSTPYS 526
Query: 530 RMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEI 589
RMPGEL+P +I+SL ARI EGFP K D+TGLLVAAI CL+AA ST P ++V M L+E
Sbjct: 527 RMPGELLPKVIMSLHARINEGFPFKNDKTGLLVAAIGCLSAAFSTFPPQMKVHNMLLDET 586
Query: 590 SAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVF 649
SAG + SGVL TL + +E+ + + C E+LQ LRAV+ NYP ++ +YW++VS +V+
Sbjct: 587 SAGFNGCEWNSGVLSTLFRFAEQFSDASTCIEALQVLRAVALNYPTLVPAYWERVSILVY 646
Query: 650 KILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLL 709
K+L++A E WK V + G+ G+KV+TAAIKVLD LRAISGFKGTEDL D+L+
Sbjct: 647 KLLQSAVVEDSPTTWKSSVRESVGYNGDKVLTAAIKVLDGCLRAISGFKGTEDLQYDRLM 706
Query: 710 DNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSM 769
D PFTSDCIR ISSAP Y +++++ FQ+G +QWSE I KH+ L+L H S++
Sbjct: 707 DTPFTSDCIRSIRISSAPSYGFDNTQE-----PIFQAGCDQWSEAIRKHIVLVLHHGSAV 761
Query: 770 VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829
VR+ VTCFAGITSS+F + K+ ++FI SS+I +ALHD SVRSAACRAIGVISCFP+
Sbjct: 762 VRSTTVTCFAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVISCFPE 821
Query: 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS 889
S SAEI +KFI AVE NT D L SVRITASWALAN+CD++R+ +DD +F+ S
Sbjct: 822 TSLSAEIYEKFILAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSFE---GLKTTS 878
Query: 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY--------------------TSS 929
++ +L E AL LT+DGDK+KSNAVR LG++S++VK +S+
Sbjct: 879 QVVDALIECALRLTEDGDKVKSNAVRALGSISKYVKLRCMTSIKSVDQDVLPFPHQQSSN 938
Query: 930 SHPASLG-DSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVF 988
SH S D+RWLER VQA +SCVTTGNVKVQWNVC ALSNLF NET+ L+DMDWAPSVF
Sbjct: 939 SHHLSCAVDTRWLERTVQAFLSCVTTGNVKVQWNVCHALSNLFSNETVKLQDMDWAPSVF 998
Query: 989 SILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSS 1048
SILLLLLRD+SNFKIRIQAA+ALAVP++ YG+SF DVV+G+EH L++L +D + P++
Sbjct: 999 SILLLLLRDASNFKIRIQAASALAVPATPLAYGRSFPDVVKGVEHTLQSLHSDRETTPAN 1058
Query: 1049 FKYRVALQKQ--------------------------KSSFLEEWFKVLCSSLGE--STTH 1080
FKY+ +L+ Q K+SFLEEW + LC +L E + +
Sbjct: 1059 FKYKRSLENQLTSTMLHLLSLVSSCHFEALSEFLIRKASFLEEWLRGLCVTLKEEDNVSG 1118
Query: 1081 LENENNSVGNQKKEMISKAIRSLIEVYEGRKQFAVAKKFEMMDSGI 1126
+ S G QKKE+IS+AIRSL +A+K + +DS +
Sbjct: 1119 SSGTSTSGGKQKKELISRAIRSLARSLRAGHSSEMAQKLQELDSNV 1164
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801896|ref|XP_002868832.1| hypothetical protein ARALYDRAFT_490568 [Arabidopsis lyrata subsp. lyrata] gi|297314668|gb|EFH45091.1| hypothetical protein ARALYDRAFT_490568 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1189 (51%), Positives = 782/1189 (65%), Gaps = 90/1189 (7%)
Query: 1 MATSSATTAVRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEV 60
M T++A+++ WRTAFL LRDE ++ + P V LL D+LFS HSLV A S LPPHE+
Sbjct: 1 MFTAAASSSAGRWRTAFLYLRDEIAT-TPPPPVPLLLQDLLFSQSHSLVSAVSHLPPHEL 59
Query: 61 TSDLLFLLELVSNAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSII 120
TSD LFLL+LVS A DG D HTC L+H + R+ F+ NSSS+ +L+SF S++
Sbjct: 60 TSDCLFLLDLVSKA---DGPDWIPVSRHTCQLIHDVCARLLFQLNSSSWPFLLHSFASVL 116
Query: 121 NFFLVKAATKSSAT-----RFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALEC 175
F L + S + R +PV+QC ET R L ++ E +HLVKF+L +
Sbjct: 117 EFLLRQPMPSSPYSTAYFSRIEPVIQCFETLRRLAAMHP------ENIHLVKFLLRIIPL 170
Query: 176 SHAEFVCLYNAS-ATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQ 234
H + V Y S T + K+L + +SLW+ AL+ M G AFS + S P D+ Q
Sbjct: 171 LHQDLVLSYGFSNQNPPPTLDLEKKLPQQNSLWDFMALAFDMFGRAFSVSESLFPTDVCQ 230
Query: 235 STIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISL----SDHVSGFV 290
++EVLRKV+DV+ASK L E+ + +L CL D + L + +
Sbjct: 231 CSLEVLRKVMDVLASKGQLVENRFMWRYVLRALQLCLWFC-GDYNLLLFFLVYIRLVAPL 289
Query: 291 TALRLFFVYGLTSSPQFTFPAVGHKEVSPN-----LPSEEPKKIDHTPYRPPHLRKKDRL 345
ALR+FF +GLT PQ + V HK+ N L S K +TPYRPPHLRK+D L
Sbjct: 290 AALRMFFCFGLTGPPQLSHSDVVHKDKHLNVKLSTLISGVSKNAKNTPYRPPHLRKRDDL 349
Query: 346 NIKQSKPQDHRIFSDDDSFTMNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLC 405
N KQ D R S DS + + +SSDSD+SDSDGS+ D+ QSSKVR+AA+VC+QDLC
Sbjct: 350 NTKQPVYCDWRRLSAHDSCSSDVISSDSDFSDSDGSVPDSYFAQSSKVRIAAIVCIQDLC 409
Query: 406 RADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTV 465
+AD KSFTTQW L PT+DVL+PRKFEATLMTCLLFDP LK R+ASAS LA M+DGPS +
Sbjct: 410 QADSKSFTTQWVTLFPTSDVLKPRKFEATLMTCLLFDPHLKVRIASASALATMMDGPSPI 469
Query: 466 FLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISC 525
FLQVAEYKES K GSFMPLS S G I+MQLH GI++LI + H RLL LFKIL+ LIS
Sbjct: 470 FLQVAEYKESTKYGSFMPLSNSLGLILMQLHTGILHLIHSDNHGRLLIQLFKILLLLISS 529
Query: 526 TPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMF 585
TPYSRMPGEL+P +IISL ARI EGFP K D+TGLLVAAI CLTAA ST P ++V M
Sbjct: 530 TPYSRMPGELLPKVIISLHARINEGFPFKNDKTGLLVAAIGCLTAAFSTFPPQMKVHYML 589
Query: 586 LEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVS 645
L+E SAG + SGVL TL + +E+ A + C E+LQ LRAV+ NYP ++ +YW++VS
Sbjct: 590 LDETSAGFDGCEWNSGVLSTLFRFAEQFADASTCIEALQVLRAVALNYPTLVPAYWERVS 649
Query: 646 TIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLD 705
+V+K+L++A E WK V + G+ G+ KVLD LRAISGFKGTEDL
Sbjct: 650 VLVYKLLQSAVVEDSPTTWKASVRESVGYNGD-------KVLDGCLRAISGFKGTEDLQY 702
Query: 706 DKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQH 765
D+L+D PFTSDCIR ISSAP Y +++++ FQ+G +QWSE I KH+ L+L H
Sbjct: 703 DRLMDTPFTSDCIRSIRISSAPSYGFDNTQE-----PIFQAGCDQWSEAIRKHIVLVLHH 757
Query: 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825
S++VR+ VTCFAGITSS+F + K+ ++FI SS+I +ALHD SVRSAACRAIGVIS
Sbjct: 758 GSAVVRSTTVTCFAGITSSIFAAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVIS 817
Query: 826 CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885
CFP+ S SAEI +KFI AVE NT D L SVRITASWALAN+CD++R+ +DD +F+
Sbjct: 818 CFPETSLSAEIYEKFIIAVEANTRDSLTSVRITASWALANVCDALRYRVDDRSFE---GL 874
Query: 886 NANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFV--------------------K 925
S ++ +L E AL LT+DGDK+KSNAVR LG++S++V +
Sbjct: 875 KTTSQVVDALIECALRLTEDGDKVKSNAVRALGSISKYVNLRCMTSIKSVDQDVLPFPHQ 934
Query: 926 YTSSSHPASL-GDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA 984
++S+SH S GD+RWLER VQA +SCVTTGNVKVQWNVC ALSNLF NET+ L+DMDWA
Sbjct: 935 HSSNSHHLSCAGDTRWLERTVQAFLSCVTTGNVKVQWNVCHALSNLFSNETLKLQDMDWA 994
Query: 985 PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLS 1044
PSVFSILLLLLRD+SNFKIRIQAAAALAVP++ YG+SF DVV+G+EH L++L +D +
Sbjct: 995 PSVFSILLLLLRDASNFKIRIQAAAALAVPATPLAYGRSFPDVVKGVEHTLQSLHSDRET 1054
Query: 1045 APSSFKYRVALQKQ--------------------------KSSFLEEWFKVLCSSLGE-- 1076
P++FKY+ +L+ Q K++FLEEW + LC +L E
Sbjct: 1055 TPTNFKYKRSLENQLTSTMLHLLSLVSSCHFEALTDFLIRKAAFLEEWLRGLCVTLKEED 1114
Query: 1077 STTHLENENNSVGNQKKEMISKAIRSLIEVYEGRKQFAVAKKFEMMDSG 1125
+ + + S G KKE+IS+AIRSL +A K + ++S
Sbjct: 1115 NVSGSSGTSTSGGKLKKELISRAIRSLARSLRAGHSSEMALKLQELESN 1163
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110737352|dbj|BAF00621.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/740 (55%), Positives = 520/740 (70%), Gaps = 57/740 (7%)
Query: 436 MTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQL 495
MTCLLFDP LK R+ASAS LA M+DGPS++FLQVAEYKES K GSFMPLS S G I+MQL
Sbjct: 1 MTCLLFDPHLKVRIASASALATMMDGPSSIFLQVAEYKESTKYGSFMPLSNSLGLILMQL 60
Query: 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKT 555
H GI++LI + H RLL LFKIL+ LIS TPYSRMPGEL+P +I+SL ARI EGFP K
Sbjct: 61 HTGILHLIHSDNHGRLLIQLFKILLLLISSTPYSRMPGELLPKVIMSLHARINEGFPFKN 120
Query: 556 DQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLAS 615
D+TGLLVAAI CL+AA ST P ++V M L+E SAG + SGVL TL + +E+ +
Sbjct: 121 DKTGLLVAAIGCLSAAFSTFPPQMKVHNMLLDETSAGFNGCEWNSGVLSTLFRFAEQFSD 180
Query: 616 PAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFI 675
+ C E+LQ LRAV+ NYP ++ +YW++VS +V+K+L++A E WK V + G+
Sbjct: 181 ASTCIEALQVLRAVALNYPTLVPAYWERVSILVYKLLQSAVVEDSPTTWKSSVRESVGYN 240
Query: 676 GEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSE 735
G+KV+TAAIKVLD LRAISGFKGTEDL D+L+D PFTSDCIR ISSAP Y ++++
Sbjct: 241 GDKVLTAAIKVLDGCLRAISGFKGTEDLQYDRLMDTPFTSDCIRSIRISSAPSYGFDNTQ 300
Query: 736 DIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE 795
+ FQ+G +QWSE I KH+ L+L H S++VR+ VTCFAGITSS+F + K+ ++
Sbjct: 301 E-----PIFQAGCDQWSEAIRKHIVLVLHHGSAVVRSTTVTCFAGITSSIFSAFNKQEKD 355
Query: 796 FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSV 855
FI SS+I +ALHD SVRSAACRAIGVISCFP+ S SAEI +KFI AVE NT D L SV
Sbjct: 356 FITSSIITAALHDKTPSVRSAACRAIGVISCFPETSLSAEIYEKFILAVEANTRDSLTSV 415
Query: 856 RITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVR 915
RITASWALAN+CD++R+ +DD +F+ S ++ +L E AL LT+DGDK+KSNAVR
Sbjct: 416 RITASWALANLCDALRYRVDDRSFE---GLKTTSQVVDALIECALRLTEDGDKVKSNAVR 472
Query: 916 GLGNLSRFVKY--------------------TSSSHPASLG-DSRWLERIVQALVSCVTT 954
LG++S++VK +S+SH S D+RWLER VQA +SCVTT
Sbjct: 473 ALGSISKYVKLRCMTSIKSVDQDVLPFPHQQSSNSHHLSCAVDTRWLERTVQAFLSCVTT 532
Query: 955 GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014
GNVKVQWNVC ALSNLF NET+ L+DMDWAPSVFSILLLLLRD+SNFKIRIQAA+ALAVP
Sbjct: 533 GNVKVQWNVCHALSNLFSNETVKLQDMDWAPSVFSILLLLLRDASNFKIRIQAASALAVP 592
Query: 1015 SSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ---------------- 1058
++ YG+SF DVV+G+EH L++L +D + P++FKY+ +L+ Q
Sbjct: 593 ATPLAYGRSFPDVVKGVEHTLQSLHSDRETTPANFKYKRSLENQLTSTMLHLLSLVSSCH 652
Query: 1059 ----------KSSFLEEWFKVLCSSLGE--STTHLENENNSVGNQKKEMISKAIRSLIEV 1106
K+SFLEEW + LC +L E + + + S G QKKE+IS+AIRSL
Sbjct: 653 FEALSEFLIRKASFLEEWLRGLCVTLKEEDNVSGSSGTSTSGGKQKKELISRAIRSLARS 712
Query: 1107 YEGRKQFAVAKKFEMMDSGI 1126
+A+K + +DS +
Sbjct: 713 LRAGHSSEMAQKLQELDSNV 732
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413917399|gb|AFW57331.1| hypothetical protein ZEAMMB73_643875 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/995 (44%), Positives = 610/995 (61%), Gaps = 85/995 (8%)
Query: 186 ASATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVID 245
A+AT S+ SG + S++W+++ + +ML + S+ S++ ++WQS IEVLRKV+D
Sbjct: 78 ANATGISSRNSGSANSKNSNIWDMKISAFSMLEDILSKVASNMTENLWQSVIEVLRKVMD 137
Query: 246 VIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTSSP 305
+ +++++ E SI+S RFY+S L CLH+VL DPK LS HV+GFV L++FFVYGL SS
Sbjct: 138 FVTARNLVIESSIMS-RFYTSFLRCLHLVLVDPKGPLSGHVAGFVANLQIFFVYGLRSS- 195
Query: 306 QFTFPAVGHKEVSPNLPSEEPKKIDHTPYRPPHLRKKDRLNIKQSKPQDHRIFSDDDSFT 365
+ P + KE ++ + YRPPHLR K+R ++DS
Sbjct: 196 --SPPTLAPKETR----TDSKPRASRGRYRPPHLRNKER--------------RENDS-- 233
Query: 366 MNFMSSDSDYS------------DSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFT 413
+ +SDS+YS DSDG K D +SSK R+AA++C+QD+C ADPK T
Sbjct: 234 LEGQNSDSEYSWYDMSSSDSDLSDSDGYAKSGDRFRSSKARLAAILCIQDICHADPKLLT 293
Query: 414 TQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYK 473
+QW +LLP NDVL+ RK++ATLMTCLLFDP K R+ +AST+A ML+ + V QVAEYK
Sbjct: 294 SQWPVLLPENDVLQQRKYQATLMTCLLFDPITKVRVEAASTIATMLERQALVLTQVAEYK 353
Query: 474 ESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPG 533
ES K GSF LS+S G I+MQLH G +YLIQRET LLA+LF++L+ LIS TPY+RMP
Sbjct: 354 ESSKRGSFTTLSSSLGQILMQLHTGALYLIQRETQATLLAALFRVLILLISATPYARMPK 413
Query: 534 ELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGS 593
EL+P +I L +R+ KT+ +LV +SCL A S P + V + E+ AG
Sbjct: 414 ELLPTVIKVLCSRLLNKHSNKTEHYAVLVTVLSCLETAFSKVPPTLDVFAVLTEDCCAGP 473
Query: 594 VEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILK 653
+ S V+ LL C E ++ + Q LR+ HNYP+ + W+++ V +L+
Sbjct: 474 SHEQEESNVIAFLLHCIEEEMHYSVRHGAFQVLRSAVHNYPSCANMIWEKLRDNVLNLLQ 533
Query: 654 AASPEVPAKAWKGHVGNTAG----FIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLL 709
S E + + + G I + + A IKV+DE LR SGF G +D+ + +LL
Sbjct: 534 IQSFE--DQKYDANFGPPGAKEESSIKGRCLVAGIKVMDECLRVSSGFTGADDIKECRLL 591
Query: 710 DNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSM 769
D SDC K I SAP +E E++ + G +W E+IE H+P L H S+M
Sbjct: 592 DIQQISDCTINKTIKSAPHFEMEAAGSSQNCTLDITLGINRWIEVIETHLPQGLSHGSAM 651
Query: 770 VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829
VRTA++TCFAG+TS VFFSL + ++++ SS + +AL+D V SVRSAACRAIG+++CFPQ
Sbjct: 652 VRTASLTCFAGMTSDVFFSLPENKRDYVTSSSVHAALNDMVPSVRSAACRAIGIVACFPQ 711
Query: 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS 889
+ S+ + KFI A+E NTH+ VR+TA+WALAN+C IR + P + S
Sbjct: 712 ILSSSSLPGKFIDAIEFNTHNSSTPVRVTAAWALANLCSCIRFRALEVHTDPYAGVLSKS 771
Query: 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYT---------SSSHPASLGDSRW 940
+ + L E AL L KD +K+KSNAVR LG LSRF+++ S+S GD W
Sbjct: 772 SI-SLLVEVALRLAKDSEKVKSNAVRALGYLSRFIRFNYHAGTINDPSNSDSVFYGDPVW 830
Query: 941 LERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSN 1000
LER+VQAL+SCVTTGNVKVQWNVC ALSNLF+N+T+ L+DM WA SV+SILLLL+RDS+N
Sbjct: 831 LERMVQALMSCVTTGNVKVQWNVCHALSNLFMNDTLRLQDMPWASSVYSILLLLIRDSNN 890
Query: 1001 FKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ-- 1058
+KI++ AA AL+VP S DYG SF DVV+GL H LE+L +++ S PS+FK R L+KQ
Sbjct: 891 YKIKMHAAVALSVPVSRLDYGSSFPDVVRGLVHALESLNSNNSSLPSNFKQRDNLEKQLT 950
Query: 1059 ------------------------KSSFLEEWFKVLCSSLGEST-----THLENENN--S 1087
KSSFLE+W + LC+S S T N+ + S
Sbjct: 951 FTALHLLSFVSPNDDPSLKDFLTKKSSFLEDWLRSLCASFNSSERQPLPTEATNDEDGFS 1010
Query: 1088 VGNQKKEMISKAIRSLIEVYEGRKQFAVAKKFEMM 1122
+K M+S A++SL+ VY GR Q + ++FE +
Sbjct: 1011 PNVTQKGMLSSALQSLLGVYAGRTQQVITQRFEQL 1045
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222639926|gb|EEE68058.1| hypothetical protein OsJ_26064 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1162 (41%), Positives = 671/1162 (57%), Gaps = 137/1162 (11%)
Query: 9 AVRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEVTSDLLFLL 68
R WRTA LTLRDE+ V SD+ FL
Sbjct: 16 GAREWRTALLTLRDESV----------------------------------VGSDVAFLA 41
Query: 69 ELVSNAPPRDGEDSTLTFTHTCHLVHGILQRVSFEFNSSSFNLILNSFQSIINFFLVKAA 128
E + P DG D L CHL+H I+ + + E +SS +L ++ L +
Sbjct: 42 ETAAAVSPCDGADDVLR--GVCHLIHDIMYKTNMEIDSSCLLAMLKFLDVLMQCSLEGSC 99
Query: 129 TKSSATR---FKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALECSHAEFVCLYN 185
K + R V +CL+ R L+ + G S E HL++ ++ + C +E
Sbjct: 100 GKGLSVRKTALDTVSECLQILRFLSKDFGGSTSLPENAHLLRVLISIVSCLQSELNLTDK 159
Query: 186 ASATQRSTAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQSTIEVLRKVID 245
+ S+ G ++ ++W+++ + +M+ +A S+ SSL D+WQS +EVLRKV+D
Sbjct: 160 PNGAGFSSHTFGPINNKNPNIWDMEISAFSMIEDALSKIASSLSEDLWQSIVEVLRKVMD 219
Query: 246 VIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALRLFFVYGLTSSP 305
+ +++ + E S +S RFY+S L CLH VL+DPK LS HV GFV L++FF+YGL SS
Sbjct: 220 FLTARNFIIESSTMS-RFYTSFLRCLHSVLSDPKGPLSAHVPGFVANLQIFFMYGLRSS- 277
Query: 306 QFTFPAVGHKEVSPNLPSEEPKKIDHTPYRPPHLRKKDRLNIKQSKPQDHRIFSDDDSFT 365
+ P + E + S + Y+PPHLRK+ K + D R SD +S
Sbjct: 278 --SPPVITPMEYKMDTKSNAGR------YKPPHLRKRGG---KGNDSFDGR-NSDSESSR 325
Query: 366 MNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDV 425
+ SSDSD SDSDG K D +SSK R+AA++C+QD+CRADPK T+ W +LLP +DV
Sbjct: 326 YDLSSSDSDMSDSDGYAKTGDRFRSSKARLAAILCIQDICRADPKLLTSLWPLLLPESDV 385
Query: 426 LRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLS 485
L+ RK++ATLMTCL+FDP +K R+ +AST+A+ML+G + V QVAEYKES + GSF LS
Sbjct: 386 LQQRKYQATLMTCLIFDPIIKVRIEAASTIASMLEGQALVLTQVAEYKESSRRGSFTTLS 445
Query: 486 TSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRA 545
+S G I+MQLH G++YLIQRET LL++LFK+L+ LIS TPY+RMP +L+P +I +R
Sbjct: 446 SSLGQILMQLHTGMLYLIQRETQTTLLSALFKVLILLISVTPYARMPKQLLPTVITDMRR 505
Query: 546 RIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFT 605
R+ + K + LL + L QMFL+ S+++D +
Sbjct: 506 RLLDRHSNKNEHYALLHFQKNHLL-------------QMFLK----FSLKMDVQE----- 543
Query: 606 LLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWK 665
+ S R F +LQ LR+ HNYP+ + W +V IV +L+ S E A
Sbjct: 544 -IHVSVR-------FGALQVLRSAVHNYPSCANIIWAKVQYIVLDLLQMQSLEDQRDANF 595
Query: 666 GHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISS 725
G + G + + AAIKV+DE LR SGFKGT+DL + +L D SDC K I S
Sbjct: 596 GLPKEESSIKG-RCLVAAIKVIDECLRVSSGFKGTDDLKEYRLQDIQQISDCTINKTIKS 654
Query: 726 APLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSV 785
AP +E + + G+ +W E+IE+ +P L H S+ VRTA++TCF G+T V
Sbjct: 655 APHFETDVPGPSQNFTLDITLGTNRWIEVIERLLPQGLSHGSATVRTASLTCFPGMTYDV 714
Query: 786 FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVE 845
FFSL + ++++ SS I +AL D +VRSAACRAIG+++CFP + S + KFI A+E
Sbjct: 715 FFSLPENKRDYVTSSSIHAALSDTAPAVRSAACRAIGIVACFPSILSSPSLPGKFIDAIE 774
Query: 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMAS-----LTESAL 900
NT + VRITASWALAN+C SIR F+ ++D+N ++ ++ L E AL
Sbjct: 775 FNTRNSSTPVRITASWALANLCSSIR-------FR-ALDTNPSAGVLDKSAISLLVEIAL 826
Query: 901 NLTKDGDKIKSNAVRGLGNLSRFVKYTSSS----HPAS---LGDSRWLERIVQALVSCVT 953
L KDG+K+KSNAVR LG L RF+++ + S P++ GD WLER+V AL+SCVT
Sbjct: 827 RLAKDGEKVKSNAVRALGYLLRFIRFNNHSDTVDDPSNSVLCGDPVWLERMVHALMSCVT 886
Query: 954 TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013
TGNVKVQWNVC ALSNLF+N+T+ L DM WA SV+SILLLLLRDS+N+KIR+ AA ALAV
Sbjct: 887 TGNVKVQWNVCHALSNLFMNDTLRLPDMPWASSVYSILLLLLRDSNNYKIRMHAAVALAV 946
Query: 1014 PSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ--------------- 1058
P S DYG SF DVV+G+EH+LE+L ++ LS+PS+FK++ L+KQ
Sbjct: 947 PVSRLDYGSSFPDVVRGIEHVLESLSSNSLSSPSNFKHKGNLEKQVTFTALHLFSFVSPK 1006
Query: 1059 -----------KSSFLEEWFKVLCSSLGESTTH-LENE--NNSVGNQ----KKEMISKAI 1100
K+SFLE+W K L S L NE N+ G +K M+S A+
Sbjct: 1007 DDQSLRDFLIKKASFLEDWLKSLFSLFNNVEDQPLANEAINDEDGFSPNVAQKAMLSSAV 1066
Query: 1101 RSLIEVYEGRKQFAVAKKFEMM 1122
+SL+++Y Q VA++FE +
Sbjct: 1067 KSLLDIYTSENQHTVAQRFEQL 1088
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1127 | ||||||
| TAIR|locus:2120928 | 1165 | AT4G38120 [Arabidopsis thalian | 0.921 | 0.890 | 0.511 | 4.8e-268 | |
| RGD|1566204 | 1252 | Heatr6 "HEAT repeat containing | 0.263 | 0.237 | 0.286 | 8.9e-38 | |
| MGI|MGI:1919790 | 1184 | Heatr6 "HEAT repeat containing | 0.263 | 0.250 | 0.282 | 8.7e-37 | |
| ZFIN|ZDB-GENE-080204-118 | 1201 | zgc:172359 "zgc:172359" [Danio | 0.291 | 0.273 | 0.261 | 2.8e-34 | |
| DICTYBASE|DDB_G0272456 | 1521 | DDB_G0272456 "armadillo-like h | 0.133 | 0.098 | 0.292 | 2.5e-31 | |
| SGD|S000003163 | 2672 | GCN1 "Positive regulator of th | 0.267 | 0.113 | 0.231 | 2.1e-05 |
| TAIR|locus:2120928 AT4G38120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2578 (912.6 bits), Expect = 4.8e-268, P = 4.8e-268
Identities = 560/1094 (51%), Positives = 725/1094 (66%)
Query: 1 MATSSATTAVRSWRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLPPHEV 60
M T++A+++V WRTAFL+LRDE S+ P V LL D+LFS HSL+ A S LP HE+
Sbjct: 1 MFTAAASSSVGRWRTAFLSLRDEISTTPP-PPVPLLLEDLLFSQSHSLISAVSHLPLHEL 59
Query: 61 TSDLLFLLELVSNAPPRDGEDSTLTFTHTCHLVHGILQRVXXXXXXXXXXXXXXXXXXII 120
TSD LFLL+LVS A DG D HTC L+H + R+ ++
Sbjct: 60 TSDCLFLLDLVSKA---DGPDWIPVSRHTCQLIHDVCARLLFQLNSSSWPLLLHSFASVL 116
Query: 121 NFFL---VKAATKSSA--TRFKPVMQCLETTRCLTNVYQGKFSPLEIVHLVKFVLHALEC 175
F L + ++ S+A +R +PV+QC ET R L ++ P E +HLVKF++ +
Sbjct: 117 EFLLRQPMPSSPYSAAYFSRIEPVIQCFETLRRLAPMH-----P-ENIHLVKFLVRVVPL 170
Query: 176 SHAEFVCLYNASATQRS-TAESGKRLHRYSSLWEVQALSITMLGEAFSRAGSSLPVDIWQ 234
H + V Y S S T K+L + + LW+ AL+ M G AFS + S P D+ Q
Sbjct: 171 LHQDLVLSYGFSNQDPSPTLLVEKKLPQQNRLWDSMALAFDMFGRAFSLSESLFPTDVSQ 230
Query: 235 STIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLSDHVSGFVTALR 294
T+EVLRKV+DV+ASK L ED + R+ +L L P S + + +LR
Sbjct: 231 CTLEVLRKVMDVLASKGQLVEDRFMW-RYMPLVLWRLQFT---PFFLGSIRLVALLASLR 286
Query: 295 LFFVYGLTSSPQFTFPAVGHKE------VSPNLPSEEPKKIDHTPYRPPHLRKKDRLNIK 348
+FF +GLT PQ + V H + +SP L S K +TPYRPPHLRK+D LN +
Sbjct: 287 MFFCFGLTGPPQLSVSDVVHNDKHLNVKLSP-LISGVSKNAKNTPYRPPHLRKRDDLNTR 345
Query: 349 QSKPQDHRIFSDDDSFTMNFMXXXXXXXXXXXXIKDTDSVQSSKVRVAALVCLQDLCRAD 408
Q R S DS + + + + D+ QSSKVR+AA+VC+QDLC+AD
Sbjct: 346 QPVSSSWRRLSAHDSGSSDVISSDSDFSDSDGSVPDSYFAQSSKVRIAAIVCIQDLCQAD 405
Query: 409 PKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQ 468
KSFTTQW L PT+DVL+PRKFEATLMTCLLFDP LK R+ASAS LA M+DGPS++FLQ
Sbjct: 406 SKSFTTQWVTLFPTSDVLKPRKFEATLMTCLLFDPHLKVRIASASALATMMDGPSSIFLQ 465
Query: 469 VAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPY 528
VAEYKES K GSFMPLS S G I+MQLH GI++LI + H RLL LFKIL+ LIS TPY
Sbjct: 466 VAEYKESTKYGSFMPLSNSLGLILMQLHTGILHLIHSDNHGRLLIQLFKILLLLISSTPY 525
Query: 529 SRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEE 588
SRMPGEL+P +I+SL ARI EGFP K D+TGLLVAAI CL+AA ST P ++V M L+E
Sbjct: 526 SRMPGELLPKVIMSLHARINEGFPFKNDKTGLLVAAIGCLSAAFSTFPPQMKVHNMLLDE 585
Query: 589 ISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIV 648
SAG + SGVL TL + +E+ + + C E+LQ LRAV+ NYP ++ +YW++VS +V
Sbjct: 586 TSAGFNGCEWNSGVLSTLFRFAEQFSDASTCIEALQVLRAVALNYPTLVPAYWERVSILV 645
Query: 649 FKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKL 708
+K+L++A E WK V + G+ G+KV+TAAIKVLD LRAISGFKGTEDL D+L
Sbjct: 646 YKLLQSAVVEDSPTTWKSSVRESVGYNGDKVLTAAIKVLDGCLRAISGFKGTEDLQYDRL 705
Query: 709 LDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISS 768
+D PFTSDCIR ISSAP Y +++++ FQ+G +QWSE I KH+ L+L H S+
Sbjct: 706 MDTPFTSDCIRSIRISSAPSYGFDNTQE-----PIFQAGCDQWSEAIRKHIVLVLHHGSA 760
Query: 769 MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP 828
+VR+ VTCFAGITSS+F + K+ ++FI SS+I +ALHD SVRSAACRAIGVISCFP
Sbjct: 761 VVRSTTVTCFAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVISCFP 820
Query: 829 QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN 888
+ S SAEI +KFI AVE NT D L SVRITASWALAN+CD++R+ +DD +F+
Sbjct: 821 ETSLSAEIYEKFILAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSFE---GLKTT 877
Query: 889 SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY--------------------TS 928
S ++ +L E AL LT+DGDK+KSNAVR LG++S++VK +S
Sbjct: 878 SQVVDALIECALRLTEDGDKVKSNAVRALGSISKYVKLRCMTSIKSVDQDVLPFPHQQSS 937
Query: 929 SSHPASLG-DSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
+SH S D+RWLER VQA +SCVTTGNVKVQWNVC ALSNLF NET+ L+DMDWAPSV
Sbjct: 938 NSHHLSCAVDTRWLERTVQAFLSCVTTGNVKVQWNVCHALSNLFSNETVKLQDMDWAPSV 997
Query: 988 FSILLLLLRDSSNFKIRIQXXXXXXVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPS 1047
FSILLLLLRD+SNFKIRIQ VP++ YG+SF DVV+G+EH L++L +D + P+
Sbjct: 998 FSILLLLLRDASNFKIRIQAASALAVPATPLAYGRSFPDVVKGVEHTLQSLHSDRETTPA 1057
Query: 1048 SFKYRVALQKQKSS 1061
+FKY+ +L+ Q +S
Sbjct: 1058 NFKYKRSLENQLTS 1071
|
|
| RGD|1566204 Heatr6 "HEAT repeat containing 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 8.9e-38, Sum P(4) = 8.9e-38
Identities = 89/311 (28%), Positives = 150/311 (48%)
Query: 751 WSEMIEKHMPLILQHISS-MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD 809
W+ M+ +P LQ ++ +A + I F SL + Q I+ L+ L+D
Sbjct: 839 WTAMLNGPLPRALQSTEHPTLQASACDALSSILPEAFSSLPNDKQILCITMLL--GLNDS 896
Query: 810 VAS-VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
V++A RA+GV FP + Q + +A+ ++ D ++VR A+W+L N+ D
Sbjct: 897 KNHLVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLQDKSLNVRAKAAWSLGNLTD 956
Query: 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS 928
++ +D PS + L+ + +SA+ + D DK+KSNAVR LGNL F++ +
Sbjct: 957 TLIVNMD--TPDPSFQDEFSGLLLLKMLQSAIQASTDKDKVKSNAVRALGNLLHFLQPSH 1014
Query: 929 SSHPASLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
P + +E +QAL+S V +KV+WN C A+ N+F N + L W
Sbjct: 1015 IERPRF---AEIIEESIQALISTVVNEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQA 1071
Query: 988 FSILLLLLRDSSNFKIRIQXXXXXXVPSSVSDYG--KSFSDVVQGLEHILENLGADHLSA 1045
+ L ++ NFK+RI+ VP + YG + FS + L L+ ++ +
Sbjct: 1072 YKALTSVVMSCKNFKVRIRSAAALSVPGRRAQYGSLEQFSQIWSALVTALQR--SEDTTD 1129
Query: 1046 PSSFKYRVALQ 1056
FKY +L+
Sbjct: 1130 FLEFKYCASLR 1140
|
|
| MGI|MGI:1919790 Heatr6 "HEAT repeat containing 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 8.7e-37, Sum P(5) = 8.7e-37
Identities = 88/311 (28%), Positives = 148/311 (47%)
Query: 751 WSEMIEKHMPLILQHISS-MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD 809
W+ M+ +P LQ ++ +A + I F SL + Q I+ L+ L+D
Sbjct: 771 WTAMLSGPLPRALQSAEHPTLQASACDALSSILPEAFSSLPNDKQILCITVLL--GLNDS 828
Query: 810 VAS-VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
V++A RA+GV FP + Q + +A+ ++ D ++VR A+W+L N+ D
Sbjct: 829 KNHLVKAATSRALGVYVLFPCLRQDVIFVADTANAILMSLQDKSLNVRAKAAWSLGNLTD 888
Query: 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS 928
++ +D PS + L+ + + A+ + D DK+KSNAVR LGNL F++ +
Sbjct: 889 TLIVNMD--TPDPSFQDEFSGLLLLKMLQCAIQASTDKDKVKSNAVRALGNLLHFLQPSH 946
Query: 929 SSHPASLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
P + +E +QAL+S V +KV+WN C A+ N+F N + L W
Sbjct: 947 VERPRF---AEIIEESIQALISTVVNEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQA 1003
Query: 988 FSILLLLLRDSSNFKIRIQXXXXXXVPSSVSDYG--KSFSDVVQGLEHILENLGADHLSA 1045
+ L ++ NFK+RI+ VPS YG + F + L L+ ++ +
Sbjct: 1004 YKALTSVVMSCKNFKVRIRSAAALSVPSKRGQYGSLEQFIQIWSALVTALQK--SEDTTD 1061
Query: 1046 PSSFKYRVALQ 1056
FKY +L+
Sbjct: 1062 FLEFKYCASLR 1072
|
|
| ZFIN|ZDB-GENE-080204-118 zgc:172359 "zgc:172359" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 91/348 (26%), Positives = 170/348 (48%)
Query: 720 IKNISSAPLYEQESSEDIKESAKAFQSGS--EQWSEMIEKHMPLILQHISS-MVRTAAVT 776
++ + + + + + + +SAK + WSE++ + LQ+ ++T+A
Sbjct: 742 LEELGTGIIQQYRADANTPQSAKRVPVNQVVQFWSEVLGGPLISALQNEHHPTLQTSACD 801
Query: 777 CFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEI 836
+ I F L +TQ I+ L+ + + + V++AA RA+GV FP + +
Sbjct: 802 TLSSILPQAFSQLPDKTQVLCITILL-GLTYSENSLVKAAAVRALGVYILFPCLREDVMF 860
Query: 837 IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLT 896
+ +A+ D +VR A+W+L N+ D++ + + + + L+ ++
Sbjct: 861 VADTANAILTALDDRSPNVRAKAAWSLGNLTDTLIVNMQSVGLE--FQEDFSDMLLLNML 918
Query: 897 ESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-- 954
SA + D D++KSNAVR LGNL F++ P LG + + +++A+ + + T
Sbjct: 919 RSATKASADKDRVKSNAVRALGNLLHFLQ------PGHLGKPVFEQPLLEAMRALIDTVR 972
Query: 955 GN--VKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQXXXXXX 1012
G+ +KV+WN C AL N F N+ + L W+ FS L ++ NFK+RI+
Sbjct: 973 GDATMKVRWNACYALGNAFRNQHLPLGSAVWSTEAFSALSCVVTSCKNFKVRIKSAAALS 1032
Query: 1013 VPSSVSDYGKS--FSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ 1058
VP++ YG S FS+V + L LE+ ++ ++Y +L+ Q
Sbjct: 1033 VPATRECYGDSQQFSEVWRSLAQALEH--SEETEDFLEYRYCASLRSQ 1078
|
|
| DICTYBASE|DDB_G0272456 DDB_G0272456 "armadillo-like helical domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 2.5e-31, Sum P(6) = 2.5e-31
Identities = 45/154 (29%), Positives = 82/154 (53%)
Query: 770 VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829
+R + F+ I S F S+ K Q ++S ++ + D+ VR++ACR++G++
Sbjct: 966 IRASICNIFSNIGSKQFESMTKNLQMHLVSVVL-GLIFDEQHIVRASACRSVGILIKIDS 1024
Query: 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS 889
+ A + + + D ++VRI A W+LAN+CD H + + + + ++
Sbjct: 1025 LHDDANFLSNSASCLTKSMGDVNINVRIKACWSLANLCD---HLVSLKSKQELLFNDIPR 1081
Query: 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923
+++ + ES LN + D KI+SN VR LGN +RF
Sbjct: 1082 QILSKVLESLLNSSFDNPKIRSNVVRALGNFARF 1115
|
|
| SGD|S000003163 GCN1 "Positive regulator of the Gcn2p kinase activity" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 145 (56.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 77/332 (23%), Positives = 136/332 (40%)
Query: 611 ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEV---PAKAWKGH 667
+R S CF+ L S + Y ++ + K L A PEV A+A K
Sbjct: 1383 KRRESVGFCFQYL------SESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAI 1436
Query: 668 VGNTAGFIGEKVVTAAIKVLDE-SLRAISG---FKGTEDLLDDKLLDNPFTSDCIRIKNI 723
+ +T G+ +K++ A+ LDE + R G G LD L ++ I +
Sbjct: 1437 MAHTTGYGVKKLIPVAVSNLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGV 1496
Query: 724 SSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITS 783
+ E + D ES K F G + I+K +P++LQ I + +
Sbjct: 1497 LNDSHKEVRKAAD--ESLKRF--GEVIRNPEIQKLVPVLLQAIGDPTKYTE-EALDSLIQ 1551
Query: 784 SVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843
+ F + +I +I +HD A+++ AC+ +G ++ + + I
Sbjct: 1552 TQFVHYIDGPSLALIIHIIHRGMHDRSANIKRKACKIVGNMAILVDTKDLIPYLQQLIDE 1611
Query: 844 VEINTHDPLVSVRITASWALANIC---------DSIRHCIDDFAFKP-SIDSNANSHLMA 893
VEI DP+ + R TA+ AL + D I +D + + S D ++ +A
Sbjct: 1612 VEIAMVDPVPNTRATAARALGALVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALA 1671
Query: 894 SLTESALNLTKDGDKIKSNAVRGLGNLSRFVK 925
+ S L LTK D++ + G+ N +++
Sbjct: 1672 EVI-SGLGLTKL-DEMLPTILAGVTNFRAYIR 1701
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.132 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1127 1091 0.00087 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 638 (68 KB)
Total size of DFA: 491 KB (2228 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 89.52u 0.14s 89.66t Elapsed: 00:00:04
Total cpu time: 89.52u 0.14s 89.66t Elapsed: 00:00:04
Start: Fri May 10 12:16:48 2013 End: Fri May 10 12:16:52 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1127 | |||
| pfam13251 | 182 | pfam13251, DUF4042, Domain of unknown function (DU | 4e-57 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-06 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.004 |
| >gnl|CDD|205431 pfam13251, DUF4042, Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 4e-57
Identities = 77/186 (41%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 392 KVRVAALVCLQDLCRA-DPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMA 450
KVR+AAL C+Q LC+A D KS W +L P N VL+ RK ATL+TCLLFDP K R A
Sbjct: 1 KVRIAALQCIQALCKALDKKSLYGYWHVLFPDN-VLQGRKQTATLLTCLLFDPSPKVRAA 59
Query: 451 SASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDR 510
+ LA MLDG Q +EYK GSF P S S IIM+LH G++ +QRET
Sbjct: 60 ALQVLAQMLDGSKLFLSQASEYKS--PSGSFTPFSVSLASIIMELHRGLLLALQRETSPP 117
Query: 511 LLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTA 570
+L L K L L+ TPY R+P L+P ++ ++ + T+ L + + L +
Sbjct: 118 VLTQLLKCLAVLVQATPYHRLPMGLLPTVVKQVKPLLRHK---DTNVRVLALTVLGMLVS 174
Query: 571 ALSTSP 576
+ +P
Sbjct: 175 TPAPTP 180
|
This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 180 amino acids in length. Length = 182 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 902 LTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961
L+ + ++ A L NLS ++ + ++ ++ + ALV + + + +V
Sbjct: 16 LSSSDENVQREAAWALSNLSA----GNNDNIQAVVEAG----GLPALVQLLKSEDEEVVK 67
Query: 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012
AL NL N + L+ LL DSSN I+ A AL+
Sbjct: 68 AALWALRNLAAGPEDNKLIV-LEAGGVPKLVNLL-DSSNEDIQKNATGALS 116
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 854 SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913
+V+ A+WAL+N+ I +++ L+ L +++ A
Sbjct: 22 NVQREAAWALSNLSAGNNDNIQAV-----VEAGGLPALVQLLKSE-------DEEVVKAA 69
Query: 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971
+ L NL+ + P V LV+ + + N +Q N ALSNL
Sbjct: 70 LWALRNLA--------AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 940 WLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999
+ ALVS +++ + VQ ALSNL N++ + A L+ LL S
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLL-KSE 61
Query: 1000 NFKIRIQAAAAL 1011
+ ++ A AL
Sbjct: 62 DEEVVKAALWAL 73
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1127 | |||
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 100.0 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 100.0 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 99.88 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.69 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.65 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.34 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.3 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.26 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.07 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 99.07 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.8 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.77 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.76 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.69 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.63 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.59 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.51 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.43 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.41 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.38 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.34 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.33 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.31 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.12 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.1 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.08 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.96 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.95 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.9 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.84 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.82 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.78 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.7 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.46 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 97.46 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.45 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.4 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 97.31 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.3 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.23 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.19 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.18 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.14 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 97.09 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.95 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.91 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.89 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.81 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.77 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.76 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.6 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 96.59 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.57 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 96.5 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 96.49 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.4 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.3 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.29 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.14 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.11 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.07 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.02 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.0 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 95.91 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.91 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.85 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 95.74 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 95.69 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 95.62 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.48 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 95.45 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 95.06 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.96 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.82 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.24 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 94.22 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 93.9 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 93.83 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 93.69 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.52 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 93.43 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 93.41 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 92.86 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 92.76 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 92.68 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 92.62 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 91.89 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 91.52 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.36 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 91.04 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 90.85 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 90.3 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 90.25 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 90.14 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 89.7 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 89.21 | |
| PF03130 | 27 | HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP | 89.07 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 88.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 88.44 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 88.36 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 88.15 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 87.86 | |
| PF03130 | 27 | HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP | 87.69 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 87.58 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 87.53 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 86.62 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 86.21 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 85.95 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 85.25 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 84.74 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 84.72 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 84.69 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 83.84 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 83.59 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 83.51 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 81.82 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 81.11 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 80.8 |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-107 Score=910.67 Aligned_cols=616 Identities=25% Similarity=0.377 Sum_probs=528.4
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhh-CCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcC
Q 035871 383 KDTDSVQSSKVRVAALVCLQDLCRA-DPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDG 461 (1127)
Q Consensus 383 ~~~~r~~~skVR~~AL~~L~al~k~-~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~g 461 (1127)
+.+.|++++|||++||+|+.++++. .+|.|||||+.||||++.++ +|+||+.-|+||++|+|+.|+|++++||+|
T Consensus 2 ~~~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g----~p~l~~l~lkd~~~~~ra~alqv~~~~l~g 77 (728)
T KOG4535|consen 2 QSKMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG----SPSLMTLTLKDPSPKTRACALQVLSAILEG 77 (728)
T ss_pred CcchhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC----CceeeEEecCCCChhHHHHHHHHHHHHHHh
Confidence 4678999999999999999999987 55789999999999999875 579999999999999999999999999999
Q ss_pred CchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHH
Q 035871 462 PSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLII 541 (1127)
Q Consensus 462 sk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~ 541 (1127)
+|.|+.+ ||+. +..+||||+++||..|+++||+|+.+|.+|++++++||++|||++||++||||||+-+|+.++|.
T Consensus 78 sk~fls~-a~~~---~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~ 153 (728)
T KOG4535|consen 78 SKQFLSV-AEDT---SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWN 153 (728)
T ss_pred hHHHHHH-Hhcc---CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 9887665 7754 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcC----------------------------C
Q 035871 542 SLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAG----------------------------S 593 (1127)
Q Consensus 542 ~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg----------------------------~ 593 (1127)
+++++|++.+++ ++|.+|..+++++++..++|||+.+++.+.++. .
T Consensus 154 ~ik~~i~~~d~~------v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~ 227 (728)
T KOG4535|consen 154 QIKPYIRHKDVN------VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSS 227 (728)
T ss_pred HHHHHhhcCCCC------hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCC
Confidence 999999865543 789999999999999999999998876533311 1
Q ss_pred C------------------CCCCcchhHHHHHhhhhcC-CCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHh
Q 035871 594 V------------------EVDKRSGVLFTLLQCSERL-ASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKA 654 (1127)
Q Consensus 594 ~------------------~~~~~s~~L~~Ll~~~~~~-~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~ 654 (1127)
+ ..+.+||.+.+..+..++. .++++|+||+|||.++++|+ ++.+.|+.++..+++..+.+
T Consensus 228 ~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~ 306 (728)
T KOG4535|consen 228 PKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGE 306 (728)
T ss_pred ccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCC
Confidence 0 0123445555556655443 24689999999999999987 67788999999999988643
Q ss_pred hCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccch
Q 035871 655 ASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESS 734 (1127)
Q Consensus 655 ~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~ 734 (1127)
.. ++ +.+++.+++++.+-... .+ |.++++
T Consensus 307 ~~-------------p~-------~~l~~a~ll~~lg~~lv----~~---------------------------~~P~~~ 335 (728)
T KOG4535|consen 307 AD-------------PS-------IQLHGAKLLEELGTGLI----QQ---------------------------YKPDST 335 (728)
T ss_pred CC-------------hH-------HHHHHHHHHHHHHHHHh----hh---------------------------cCCCcc
Confidence 22 23 34566777787643221 11 222222
Q ss_pred hhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhH
Q 035871 735 EDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASV 813 (1127)
Q Consensus 735 ~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~V 813 (1127)
.. + .+. --||..++.+..|....|+. ++..+++|+++++|+++.|+.||+++|..++..+ .|+-+.++..|
T Consensus 336 k~-----~-~q~-~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl-~GC~d~~~~lv 407 (728)
T KOG4535|consen 336 KA-----P-DQR-APFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFL-LGCNDSKNRLV 407 (728)
T ss_pred cc-----h-hhh-ccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHH-hcccchHHHHH
Confidence 11 1 111 24999999999999999985 8899999999999999999999999999998754 35444488999
Q ss_pred HHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHH
Q 035871 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMA 893 (1127)
Q Consensus 814 RaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~ 893 (1127)
|++|.|++|+||++|+++.|..|++++.++++..+.|+..++|+||+|+||||+|+|..++- ...+..++++..+|.
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~P---s~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMP---TPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCC---CchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998763 222345688899999
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhc
Q 035871 894 SLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 894 ~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~ 972 (1127)
++++.|.++..|+||||.||+|||||++++++.-. .+++....|..+.+|+.++ ..++||||||||||+||+|+
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~-----~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIE-----KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh-----hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 99999999999999999999999999999999421 1255667889999999998 56899999999999999999
Q ss_pred cccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhh
Q 035871 973 NETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYR 1052 (1127)
Q Consensus 973 n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyr 1052 (1127)
|+++++.+++|++++|++||.+|++|+||||||+||.||.+|++|++||.+|+-.|++++++|.. ++...+|.||+|+
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~--s~~~v~f~eY~~~ 637 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQK--SEDTIDFLEYKYC 637 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 6889999999999
Q ss_pred HHHHHH-------------------HHHHHH-HHHHHHhhcccccccccc
Q 035871 1053 VALQKQ-------------------KSSFLE-EWFKVLCSSLGESTTHLE 1082 (1127)
Q Consensus 1053 d~L~~Q-------------------~~~~l~-~~l~~~~~~~~~~~~~~~ 1082 (1127)
|+|++| .|+.|| +.|+...+.|++|+.++.
T Consensus 638 Dsl~~q~c~av~hll~la~SsdLp~mRETle~~~f~~~~a~~~~V~~~~~ 687 (728)
T KOG4535|consen 638 DSLRTQICQALIHLLSLASSSDLPCMRETLELSQFLKSGAEGDDVGAPHS 687 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcchhhccchHHHHHhccccccccCCCC
Confidence 999999 567777 568888889999888665
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=382.81 Aligned_cols=181 Identities=41% Similarity=0.654 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHHHhh-CCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhh
Q 035871 392 KVRVAALVCLQDLCRA-DPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVA 470 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~-~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~A 470 (1127)
|||++|++||++++|. ++|.+||||+.||||+ ....++.++||+|||++||++|||++|++++++||+|+|+||.+ |
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~-~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~-A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDS-VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ-A 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC-CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH-H
Confidence 7999999999999999 9999999999999999 33345578999999999999999999999999999999998877 6
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhc
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEG 550 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~ 550 (1127)
|+. .++++||||||.+||+||+|+|++|+++|++|+++++++|+|||+++||++|||+||++||++++++++++++.++
T Consensus 79 e~~-~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 79 EES-KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred Hhc-CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 655 3578899999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQV 581 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV 581 (1127)
+. .++++++.|++++++++++.+||
T Consensus 158 d~------~v~v~~l~~~~~l~s~~~~~~e~ 182 (182)
T PF13251_consen 158 DP------NVRVAALSCLGALLSVQPPLPEV 182 (182)
T ss_pred CC------cHHHHHHHHHHHHHcCCCCCCCC
Confidence 32 27899999999999999999885
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=227.15 Aligned_cols=382 Identities=16% Similarity=0.070 Sum_probs=277.3
Q ss_pred hHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcc
Q 035871 618 ICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGF 697 (1127)
Q Consensus 618 vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~ 697 (1127)
.|.--.|+++.++.+||....++|++....+.++++-...++..+.|+ ..+++.|++++++|
T Consensus 289 ~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k------------------~~~q~~~fw~~~l~ 350 (728)
T KOG4535|consen 289 TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTK------------------APDQRAPFWTMMLN 350 (728)
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCccc------------------chhhhccHHHHHcc
Confidence 455566789999999999999999999999998887665444332221 23558889999999
Q ss_pred cCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchh------hhHHHHHhhHHHHHccCChhHH
Q 035871 698 KGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSE------QWSEMIEKHMPLILQHISSMVR 771 (1127)
Q Consensus 698 ~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~------~W~~iie~~Lp~~l~d~~~~VR 771 (1127)
+|+.+...|++++++|+|+|++.+.+.++|.|+.++.+.- ..++++.|+. +|...+..+..-.|.+....+|
T Consensus 351 ~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T--~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 351 GPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT--LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred CCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh--hhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 9999999999999999999999999999999998752110 1246777877 9999999877666666678899
Q ss_pred HHHHHHHhccchhHHh-hcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCC
Q 035871 772 TAAVTCFAGITSSVFF-SLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHD 850 (1127)
Q Consensus 772 aaAc~cLa~Igs~~f~-~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D 850 (1127)
.-..+|...|....|+ .|..+...++..+.|-.++.|.-|+||++++|+.|+.. ++.+....+.- -
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll------------~~~~~~A~~~~-A 495 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL------------LKMLRSAIEAS-A 495 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH------------HHHHHHHHHhh-h
Confidence 9999999998888887 77777777766667778889999999999999999873 34443333222 2
Q ss_pred CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCC
Q 035871 851 PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSS 930 (1127)
Q Consensus 851 ~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~ 930 (1127)
.+..||-+|-.||||+..-+..-. +..+. ++-+..+.+++.+. .++.+.||||||+.|+|||.+
T Consensus 496 d~dkV~~navraLgnllQvlq~i~-~~~~~-----e~~~~~~~~l~~~v--~~~~~~kV~WNaCya~gNLfk-------- 559 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIE-KPTFA-----EIIEESIQALISTV--LTEAAMKVRWNACYAMGNLFK-------- 559 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhh-hccHH-----HHHHHHHHhcccce--ecccccccchHHHHHHHHhhc--------
Confidence 345899999999999998654211 11111 12222244444432 267888999999999999952
Q ss_pred CCCC-CCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 931 HPAS-LGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 931 ~~~~-~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
|+.. -++-+|.-.++++|+..+++ .|+|||.||+-||....+.+..+.. -.-..+.|..+| ||.+--
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~----~~Lsw~~lv~aL-------i~s~~~ 628 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQ----YALSWNALVTAL-------QKSEDT 628 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhH----HhHHHHHHHHHH-------HHHHHH
Confidence 2222 25567899999999999965 8999999999999988877655422 122334555555 333333
Q ss_pred HHhcCCCcccccCCchHHHHHHHHHHHHH--hccCCCC-CCccchhhHHHHHHH
Q 035871 1009 AALAVPSSVSDYGKSFSDVVQGLEHILEN--LGADHLS-APSSFKYRVALQKQK 1059 (1127)
Q Consensus 1009 ~AL~~p~~R~~yG~~~~~V~~~L~~aLe~--~~s~~~~-df~Eykyrd~L~~Q~ 1059 (1127)
..+--...|..||.++++++..++..+++ +-++..+ .-+.|+|..++..|.
T Consensus 629 v~f~eY~~~Dsl~~q~c~av~hll~la~SsdLp~mRETle~~~f~~~~a~~~~V 682 (728)
T KOG4535|consen 629 IDFLEYKYCDSLRTQICQALIHLLSLASSSDLPCMRETLELSQFLKSGAEGDDV 682 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhccchHHHHHhccccccc
Confidence 34433446778999999999999988887 2222222 235599999998883
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-16 Score=190.19 Aligned_cols=447 Identities=18% Similarity=0.208 Sum_probs=298.4
Q ss_pred hhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHH--------hcCC
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAM--------LDGP 462 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaL--------L~gs 462 (1127)
-.|||.|++++ +|.++.||+.+-+++.. .-+.+|++++.++|.+.||-.-+.+++.+ |.+.
T Consensus 51 p~~Rq~aaVl~-------Rkl~~~~w~~l~~e~~~----siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPel 119 (1075)
T KOG2171|consen 51 PQVRQLAAVLL-------RKLLTKHWSRLSAEVQQ----SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPEL 119 (1075)
T ss_pred hHHHHHHHHHH-------HHHHHHHhhcCCHHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHH
Confidence 36999999999 67777799999877632 14568999999999999999999999988 5555
Q ss_pred chhhhhhhhhccccCC----cccccchHHHHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCC---
Q 035871 463 STVFLQVAEYKESIKC----GSFMPLSTSYGHIIM----QLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRM--- 531 (1127)
Q Consensus 463 k~~llq~AE~~es~~~----~SFTsfS~tLg~~l~----eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL--- 531 (1127)
-+|+.|++...+.+.+ .=|+++..+.|+... .+++.+...+.++.++ +....++.++.++...+-++=
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~ 198 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVD 198 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHH
Confidence 6788887654322111 346777777777665 8999999999998888 999999999999888762111
Q ss_pred -CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhh
Q 035871 532 -PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCS 610 (1127)
Q Consensus 532 -~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~ 610 (1127)
=++++|++++.+...+..+.. | ....+|.+|..++.+.|+.-. ..+..+++++
T Consensus 199 ~~~~llP~~l~vl~~~i~~~d~---~---~a~~~l~~l~El~e~~pk~l~--------------------~~l~~ii~~~ 252 (1075)
T KOG2171|consen 199 KFRDLLPSLLNVLQEVIQDGDD---D---AAKSALEALIELLESEPKLLR--------------------PHLSQIIQFS 252 (1075)
T ss_pred HHHHHhHHHHHHhHhhhhccch---H---HHHHHHHHHHHHHhhchHHHH--------------------HHHHHHHHHH
Confidence 168899999988777754332 1 234678889888887764321 0233333332
Q ss_pred -----hcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCC--CCCCccccchhHHHHH
Q 035871 611 -----ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGH--VGNTAGFIGEKVVTAA 683 (1127)
Q Consensus 611 -----~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~--~~~~~~l~g~~~~l~A 683 (1127)
+.+...++|.-||++|..++.+-|.....+-.....++.-+|.+.+.++..++|... ..++..-.+ -.+|
T Consensus 253 l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~---~~~A 329 (1075)
T KOG2171|consen 253 LEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP---YRAA 329 (1075)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCc---HHHH
Confidence 234456899999999999999988777766665556666677666655433555432 233321111 1235
Q ss_pred HHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH
Q 035871 684 IKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL 763 (1127)
Q Consensus 684 ~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l 763 (1127)
.+.||-...-+.| ++..-.+++ ++|..+
T Consensus 330 ~~~lDrlA~~L~g---------------------------------------------------~~v~p~~~~-~l~~~l 357 (1075)
T KOG2171|consen 330 EQALDRLALHLGG---------------------------------------------------KQVLPPLFE-ALEAML 357 (1075)
T ss_pred HHHHHHHHhcCCh---------------------------------------------------hhehHHHHH-HHHHHh
Confidence 5555532111100 111112233 788999
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai 841 (1127)
+.++..-|-||.-|||.|+......+-. +-..|++.+ +..++|.+|.||.|||-|+|.+. .-|.+.. -+-+...
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~V-l~~l~DphprVr~AA~naigQ~stdl~p~iqk--~~~e~l~ 433 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIV-LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK--KHHERLP 433 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHH-HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH--HHHHhcc
Confidence 9999999999999999998887666533 455677754 46789999999999999999996 3333321 1234445
Q ss_pred HHHHHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhc--cCCchhhhhHHHHHh
Q 035871 842 HAVEINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT--KDGDKIKSNAVRGLG 918 (1127)
Q Consensus 842 ~aLl~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~--~D~DKVRsnAvRALG 918 (1127)
++|+..++|+.. .|..-||=||-|+....-.. .+.+ .|.-|++..+... +++.+||.+||-|+|
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~------------~l~p-YLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKS------------ILEP-YLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH------------HHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 566666655543 56666677777776542211 1111 2333444333333 345579999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGN 956 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n 956 (1127)
.+..-+... .....++.++-|.+++.+.+
T Consensus 501 svA~AA~~~---------F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 501 SVADAAQEK---------FIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHhhh---------hHhHHHHHHHHHHHHHhCCC
Confidence 997444432 23467899999999987655
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=173.13 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=158.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|-..|.|+++.||..|+.+|+.+|++. +.. ++..+++|+++.||..|+++||.+..-+.- .
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~-----------~~~-~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~ 88 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQD-----------VFR-LAIELCSSKNPIERDIGADILSQLGMAKRC------Q 88 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcch-----------HHH-HHHHHHhCCCHHHHHHHHHHHHhcCCCccc------h
Confidence 4556789999999999999999999653 222 334668999999999999999998421110 1
Q ss_pred HHHHHHHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHH
Q 035871 838 DKFIHAVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVR 915 (1127)
Q Consensus 838 ~~ai~aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvR 915 (1127)
..+++.|... ++|++..||..|+.+||++|.... ...+..+..+. .+..|.+ .||..|++
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--------------~~~~~a~~~l~----~~~~D~~~~VR~~a~~ 150 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNP--------------LYSPKIVEQSQ----ITAFDKSTNVRFAVAF 150 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--------------ccchHHHHHHH----HHhhCCCHHHHHHHHH
Confidence 3456666654 799999999999999999985321 11122333332 2345555 79999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
|||++. .+.+++.|+..+++.+..||..|++|||++... .+.+++.|+.++
T Consensus 151 aLg~~~-------------------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~----------~~~~~~~L~~~L 201 (280)
T PRK09687 151 ALSVIN-------------------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD----------NPDIREAFVAML 201 (280)
T ss_pred HHhccC-------------------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHh
Confidence 999883 256999999999999999999999999998322 246889999999
Q ss_pred hcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 996 RDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 996 ~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+++|..||..|+.||| .+|+ +.++..|+..|++
T Consensus 202 -~D~~~~VR~~A~~aLg------~~~~--~~av~~Li~~L~~ 234 (280)
T PRK09687 202 -QDKNEEIRIEAIIGLA------LRKD--KRVLSVLIKELKK 234 (280)
T ss_pred -cCCChHHHHHHHHHHH------ccCC--hhHHHHHHHHHcC
Confidence 5789999999999999 4665 4788888888875
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=164.77 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=152.4
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHH
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDK 839 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ 839 (1127)
-.+++++++.+|..|+.+||.||... ..+..++..|..-+.+|+++.||.+|+.+||.+..-. ......
T Consensus 60 ~~ll~~~d~~vR~~A~~aLg~lg~~~------~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-----~~~~~~ 128 (280)
T PRK09687 60 IELCSSKNPIERDIGADILSQLGMAK------RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN-----PLYSPK 128 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCc------cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-----cccchH
Confidence 34678999999999999999998532 0122233323323379999999999999999984211 111245
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
+++.+...+.|++..||..|+||||++++.- .+..|++. .+|+| .||..|+.|||
T Consensus 129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~--------------------ai~~L~~~----L~d~~~~VR~~A~~aLg 184 (280)
T PRK09687 129 IVEQSQITAFDKSTNVRFAVAFALSVINDEA--------------------AIPLLINL----LKDPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHhccCCHH--------------------HHHHHHHH----hcCCCHHHHHHHHHHHh
Confidence 6777778889999999999999999988641 23334332 35555 79999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
++. . + .+.+++.|++.+.+.|..||-+|..|||++.. ..+++.|+..+.+
T Consensus 185 ~~~----~---------~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------------~~av~~Li~~L~~- 234 (280)
T PRK09687 185 SNK----Y---------D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------------KRVLSVLIKELKK- 234 (280)
T ss_pred cCC----C---------C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------------hhHHHHHHHHHcC-
Confidence 982 0 1 24688899999999999999999999999874 3589999999965
Q ss_pred CChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 999 SNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.+ ||+.|+.||| .+|.. ..+..|...++.
T Consensus 235 ~~--~~~~a~~ALg------~ig~~--~a~p~L~~l~~~ 263 (280)
T PRK09687 235 GT--VGDLIIEAAG------ELGDK--TLLPVLDTLLYK 263 (280)
T ss_pred Cc--hHHHHHHHHH------hcCCH--hHHHHHHHHHhh
Confidence 43 8999999999 57764 677766666653
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=157.54 Aligned_cols=193 Identities=22% Similarity=0.222 Sum_probs=142.1
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...|+++++.||.+|+++|+.++.... . .++.+++|+++.||.+|+++||.+ ++
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~------------~-~l~~~L~D~d~~VR~~Av~aL~~~-------~~---- 743 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAGDA------------A-LFAAALGDPDHRVRIEAVRALVSV-------DD---- 743 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCH------------H-HHHHHhcCCCHHHHHHHHHHHhcc-------cC----
Confidence 34456788899999999999998763221 1 223567999999999999999976 11
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
.+.|+..++|++..||..|+.+||.+++.- .. .+..|. .+.+|.| .||..|+++
T Consensus 744 ---~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------------~~---~~~~L~----~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 744 ---VESVAGAATDENREVRIAVAKGLATLGAGG---------------AP---AGDAVR----ALTGDPDPLVRAAALAA 798 (897)
T ss_pred ---cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------------ch---hHHHHH----HHhcCCCHHHHHHHHHH
Confidence 234667789999999999999999998631 00 012222 2346666 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++. +. +..+..|+..+.+.+..||..|+.|||.+... ..++.|..+|
T Consensus 799 Lg~~g---------------~~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L- 847 (897)
T PRK13800 799 LAELG---------------CP---PDDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEAL- 847 (897)
T ss_pred HHhcC---------------Cc---chhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHh-
Confidence 99994 11 23446688889999999999999999998744 3678999999
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
++++-.||..|+.||+.. -| -+.....|..+|++
T Consensus 848 ~D~~~~VR~~A~~aL~~~-----~~--~~~a~~~L~~al~D 881 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRW-----PG--DPAARDALTTALTD 881 (897)
T ss_pred cCCCHHHHHHHHHHHhcc-----CC--CHHHHHHHHHHHhC
Confidence 568999999999999942 12 23566666666654
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-09 Score=142.70 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=156.9
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHH----HHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS----LIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~----Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
.|...|.+++..+|..|+.+|++|.... ++++..++.. .+..++...++.+|-.|+++||+++..+.-..+
T Consensus 450 ~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-----denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 450 LLISLLGLSSEQQQEYAVALLAILTDEV-----DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556677888999999999999985422 2333333221 334777888999999999999999763321111
Q ss_pred hHHH--HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhh
Q 035871 834 AEII--DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS 911 (1127)
Q Consensus 834 ~~fv--~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRs 911 (1127)
.+ ..+++.|+..+++.+..+|..|+|||.|+... . + .+.+..+++- ...|+++++.
T Consensus 525 --iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~----~-----d--------~~~I~~Lv~L---Llsdd~~~~~ 582 (2102)
T PLN03200 525 --CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT----A-----D--------AATISQLTAL---LLGDLPESKV 582 (2102)
T ss_pred --HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc----c-----c--------hhHHHHHHHH---hcCCChhHHH
Confidence 23 25788899999999999999999999999643 0 1 1123333332 2567789999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHH
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSIL 991 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~L 991 (1127)
++.|+|||++.....+..... + .....+++.|.+.+++++.+++=.||++|+|++.+..-.- +.--....++.|
T Consensus 583 ~aL~vLgnIlsl~~~~d~~~~---g--~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~-~avv~agaIpPL 656 (2102)
T PLN03200 583 HVLDVLGHVLSVASLEDLVRE---G--SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC-ESLATDEIINPC 656 (2102)
T ss_pred HHHHHHHHHHhhcchhHHHHH---h--hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHHcCCHHHH
Confidence 999999999866554321000 0 0123588999999999999999999999999996542110 000112358999
Q ss_pred HHHHhcCCChHHHHHHHHHhcCCC
Q 035871 992 LLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 992 l~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+.+|. ..+|+||..||.||+...
T Consensus 657 V~LLs-s~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 657 IKLLT-NNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHh-cCChHHHHHHHHHHHHHH
Confidence 99995 699999999999997443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-11 Score=151.97 Aligned_cols=177 Identities=24% Similarity=0.235 Sum_probs=138.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.+...+.|+++.||.+|+.+|+.++... .++.+++|+++.||.+|+++||.+ +...
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~~~---------------~l~~~l~D~~~~VR~~aa~aL~~~------~~~~--- 773 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDDVE---------------SVAGAATDENREVRIAVAKGLATL------GAGG--- 773 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccCcH---------------HHHHHhcCCCHHHHHHHHHHHHHh------cccc---
Confidence 4456789999999999999999986432 123567999999999999999988 3221
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
...++.|...+.|++..||..|+.+||++++.- .. ...+++ +.+|.| .||..|++|
T Consensus 774 ~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------------~~----~~~l~~----aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 774 APAGDAVRALTGDPDPLVRAAALAALAELGCPP---------------DD----VAAATA----ALRASAWQVRQGAARA 830 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------------hh----HHHHHH----HhcCCChHHHHHHHHH
Confidence 133577888889999999999999999998530 11 112222 235555 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||.+. .+.+++.|+..++|.+..||..|+.|||.+-. .+.+.+.|..++.
T Consensus 831 L~~l~-------------------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-----------~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAA-------------------ADVAVPALVEALTDPHLDVRKAAVLALTRWPG-----------DPAARDALTTALT 880 (897)
T ss_pred HHhcc-------------------ccchHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------CHHHHHHHHHHHh
Confidence 99883 24577899999999999999999999999621 2457888888885
Q ss_pred cCCChHHHHHHHHHhc
Q 035871 997 DSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~ 1012 (1127)
+.+-.||.-|+.||.
T Consensus 881 -D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 881 -DSDADVRAYARRALA 895 (897)
T ss_pred -CCCHHHHHHHHHHHh
Confidence 578889999999996
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-07 Score=114.82 Aligned_cols=464 Identities=19% Similarity=0.238 Sum_probs=267.5
Q ss_pred hhhhHHHHHHHHH-HHHhhCCc---cccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchh
Q 035871 390 SSKVRVAALVCLQ-DLCRADPK---SFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTV 465 (1127)
Q Consensus 390 ~skVR~~AL~~L~-al~k~~~K---~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~ 465 (1127)
...+|++|=.-|. .|+-.++. ..-.-|..+-++... +-.+.+.--|.-|.|+.+.+|+|+++++
T Consensus 50 ~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~re-----qVK~~il~tL~~~ep~~~s~Aaq~va~I------- 117 (859)
T KOG1241|consen 50 SDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIRE-----QVKNNILRTLGSPEPRRPSSAAQCVAAI------- 117 (859)
T ss_pred cHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHH-----HHHHHHHHHcCCCCCCccchHHHHHHHH-------
Confidence 3468998866665 78777663 355568877666531 2235556678889999999999999875
Q ss_pred hhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHH
Q 035871 466 FLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRA 545 (1127)
Q Consensus 466 llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~ 545 (1127)
++.|-+.+. +- ++-..|..-.-.|....+-...|-.++...+..- |+.+..-.+.+..
T Consensus 118 --A~~ElP~n~----wp-----------~li~~lv~nv~~~~~~~~k~~slealGyice~i~-----pevl~~~sN~iLt 175 (859)
T KOG1241|consen 118 --ACIELPQNQ----WP-----------ELIVTLVSNVGEEQASMVKESSLEALGYICEDID-----PEVLEQQSNDILT 175 (859)
T ss_pred --HHhhCchhh----CH-----------HHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-----HHHHHHHHhHHHH
Confidence 333333211 11 1222233333344444444556666776665542 2222222222333
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHH-HHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHH
Q 035871 546 RIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQ-MFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQ 624 (1127)
Q Consensus 546 ~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~-~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQ 624 (1127)
-|.++-+-.....++|-+|+.||-.-+. +.+ .+..|.. ++ ++-++.=.+-+.....+|..|+|
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLe-------f~~~nF~~E~e-------rn--~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLE-------FTKANFNNEME-------RN--YIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHH-------HHHHhhccHhh-------hc--eeeeeeeecccCCcHHHHHHHHH
Confidence 3333332111123577788877754332 211 1111100 00 11000000112334679999999
Q ss_pred HHHHHHhhChhhhhhhHHH-HHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCcccc
Q 035871 625 ALRAVSHNYPNIMSSYWQQ-VSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDL 703 (1127)
Q Consensus 625 vL~ala~~yp~l~~~~~~~-l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~ 703 (1127)
+|.++..-|...+..|... +..+-..-++ ++. |.+.++|+..=-.
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amk--s~~------------------deValQaiEFWst-------------- 285 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMK--SDN------------------DEVALQAIEFWST-------------- 285 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCc------------------HHHHHHHHHHHHH--------------
Confidence 9999999998999888875 3333333332 111 2444444331110
Q ss_pred ccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHc-----cCC-----hhHHHH
Q 035871 704 LDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQ-----HIS-----SMVRTA 773 (1127)
Q Consensus 704 ~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~-----d~~-----~~VRaa 773 (1127)
=|...+.+ +++. .+......|+ ....|=...+..++|.+++ |++ =.+-.+
T Consensus 286 ------------iceEEiD~----~~e~--~e~~d~~~~p--~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 286 ------------ICEEEIDL----AIEY--GEAVDQGLPP--SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred ------------HHHHHHHH----HHHH--HHHhhcCCCc--hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 01000000 0000 0000000010 0112223334445555553 332 246677
Q ss_pred HHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCC
Q 035871 774 AVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPL 852 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~ 852 (1127)
|-.||.- |...=+|+ -..++. .+-.-...+|.-=|-||+=|.|.+--.|+-......+..+.+.++..+.|++
T Consensus 346 Ag~CL~l-----~A~~~~D~Iv~~Vl~-Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 346 AGVCLML-----FAQCVGDDIVPHVLP-FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred HHHHHHH-----HHHHhcccchhhhHH-HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 7788875 22222222 335555 3444567888899999999999998888877777788999999999999999
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
..||-.+||.||.|+|.+... .++...+..++.+.+.-..|+++|..|+++|+-+|..-+..-...++
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~------------~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEA------------IINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred hhhcchHHHHHHHHHhhchhh------------cccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999987532 34455667777777778899999999999999999755443222221
Q ss_pred CCCCChhHHHHHHHHHHHhhc--cCC-ccchhhHHHHHHhhhcccc
Q 035871 933 ASLGDSRWLERIVQALVSCVT--TGN-VKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~--~~n-~KVRWNAc~ALGnl~~n~~ 975 (1127)
.........+.+|+.|++.-. +|| ...|-.|=.|||.+.+|.+
T Consensus 488 qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 488 QTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred CCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 000011357889999998864 444 7889999999999998853
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-09 Score=119.22 Aligned_cols=194 Identities=23% Similarity=0.316 Sum_probs=148.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+-..+.+.++.+|..|...++.++... ++.. +...+.|+++.||..|+.+||.+ + + .
T Consensus 48 ~~~~l~~~~~~vr~~aa~~l~~~~~~~-----------av~~-l~~~l~d~~~~vr~~a~~aLg~~------~-~----~ 104 (335)
T COG1413 48 LLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPL-LRELLSDEDPRVRDAAADALGEL------G-D----P 104 (335)
T ss_pred HHHHHcCCCHHHHHHHHHHHhhhchHH-----------HHHH-HHHHhcCCCHHHHHHHHHHHHcc------C-C----h
Confidence 346778889999999999999998765 3332 34678999999999999999988 2 2 4
Q ss_pred HHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc----------
Q 035871 839 KFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD---------- 907 (1127)
Q Consensus 839 ~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D---------- 907 (1127)
.+++.++..+. |++..||..|+|+||.+.+.-. +..+++. .+|++
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------~~~l~~~----l~~~~~~~a~~~~~~ 160 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA--------------------LDPLLEA----LQDEDSGSAAAALDA 160 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------------------hHHHHHH----hccchhhhhhhhccc
Confidence 66777777776 8999999999999999998632 1111111 12211
Q ss_pred ---hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCch
Q 035871 908 ---KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA 984 (1127)
Q Consensus 908 ---KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa 984 (1127)
.||..++.+||.++ .+..+..|+..+.+.+..||+.|+.|||.++...
T Consensus 161 ~~~~~r~~a~~~l~~~~-------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------- 211 (335)
T COG1413 161 ALLDVRAAAAEALGELG-------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------- 211 (335)
T ss_pred hHHHHHHHHHHHHHHcC-------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------
Confidence 59999999999994 2567788999999888899999999999999763
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 985 PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 985 ~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
..+...+...+ .+.+..||..++.+|+. +|. ......+...+++
T Consensus 212 ~~~~~~l~~~~-~~~~~~vr~~~~~~l~~------~~~--~~~~~~l~~~l~~ 255 (335)
T COG1413 212 VEAADLLVKAL-SDESLEVRKAALLALGE------IGD--EEAVDALAKALED 255 (335)
T ss_pred hhHHHHHHHHh-cCCCHHHHHHHHHHhcc------cCc--chhHHHHHHHHhc
Confidence 23456666777 57899999999999994 453 3566666777765
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-05 Score=99.29 Aligned_cols=604 Identities=16% Similarity=0.152 Sum_probs=334.5
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCC---chh---
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGP---STV--- 465 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gs---k~~--- 465 (1127)
..|..|+..|..+....+-.+.+|...|. .|+.-=+.||+..||.+|++++.++..-. +..
T Consensus 133 ~~rE~al~il~s~~~~~~~~~~~~~~~l~-------------~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 133 SLRESALLILSSLPETFGNTLQPHLDDLL-------------RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred chhHHHHHHHHhhhhhhccccchhHHHHH-------------HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH
Confidence 47899999998887766666666655554 34445567888889999999998774332 111
Q ss_pred -------hhhhhhhc----cc----cCCcccccchHHHHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHhHhc
Q 035871 466 -------FLQVAEYK----ES----IKCGSFMPLSTSYGHIIMQ-----LHNGIIYLIQRETHDRLLASLFKILMPLISC 525 (1127)
Q Consensus 466 -------llq~AE~~----es----~~~~SFTsfS~tLg~~l~e-----LHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~ 525 (1127)
.+.+.... ++ .--.+|+-|..+.+..++- +..+|--+=..|-+..+...+|-++..++.+
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 11111100 00 0123555555554444422 2334444556777888999999999999999
Q ss_pred ccC-CCCCCCchHHHHHHHHHHHhhcCCC----C------CchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCC
Q 035871 526 TPY-SRMPGELMPNLIISLRARIEEGFPL----K------TDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSV 594 (1127)
Q Consensus 526 TPY-~RL~~~Ll~~vv~~l~~~i~~~~~~----~------~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~ 594 (1127)
.|- .|....+..+++-.+.....+...+ . .|...--+.|..++.-+-..-++..
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--------------- 344 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--------------- 344 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---------------
Confidence 885 4554556666666655544332222 0 0100011233334433322222111
Q ss_pred CCCCcchhHHHHHhhhh---cCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCC
Q 035871 595 EVDKRSGVLFTLLQCSE---RLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNT 671 (1127)
Q Consensus 595 ~~~~~s~~L~~Ll~~~~---~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~ 671 (1127)
++.-++++.. +.....-|.-||-.|++++-+.+..+..+.+++..++++.|++.++
T Consensus 345 -------v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp-------------- 403 (1075)
T KOG2171|consen 345 -------VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP-------------- 403 (1075)
T ss_pred -------ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH--------------
Confidence 2222222221 2334567999999999999999999999999999999988764332
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhh
Q 035871 672 AGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQW 751 (1127)
Q Consensus 672 ~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W 751 (1127)
+++.+|++.+..+ - .|++ |.++ +++=
T Consensus 404 ------rVr~AA~naigQ~--------s-tdl~-------------------------------------p~iq--k~~~ 429 (1075)
T KOG2171|consen 404 ------RVRYAALNAIGQM--------S-TDLQ-------------------------------------PEIQ--KKHH 429 (1075)
T ss_pred ------HHHHHHHHHHHhh--------h-hhhc-------------------------------------HHHH--HHHH
Confidence 7888888876522 1 1111 1111 1111
Q ss_pred HHHHHhhHHHHHccC-ChhHHHHHHHHHhccchhHHhhcchhHHH----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhc
Q 035871 752 SEMIEKHMPLILQHI-SSMVRTAAVTCFAGITSSVFFSLLKETQE----FIISSLIDSALHDDVASVRSAACRAIGVISC 826 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~-~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~ 826 (1127)
..++. .|-..+.++ ++.|.+.|+.|+-+.. +..+++.-+ .++...+.-+...+.+.||-.++.|||...-
T Consensus 430 e~l~~-aL~~~ld~~~~~rV~ahAa~al~nf~----E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 430 ERLPP-ALIALLDSTQNVRVQAHAAAALVNFS----EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HhccH-HHHHHhcccCchHHHHHHHHHHHHHH----HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 11111 122233344 4789999999988742 223333322 2333334455677889999999999998742
Q ss_pred ccccccchHHHHHHHHHHHHhc---C-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhh
Q 035871 827 FPQVSQSAEIIDKFIHAVEINT---H-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNL 902 (1127)
Q Consensus 827 ~p~L~~d~~fv~~ai~aLl~~l---~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a 902 (1127)
.-.. .-..|.+..++-|..-+ + +....+|.|..--++=|+-+..+.. |. ....+++..+.+....-
T Consensus 505 AA~~-~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~----F~-----~~a~eliqll~~~~~~~ 574 (1075)
T KOG2171|consen 505 AAQE-KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK----FL-----PLAEELIQLLLELQGSD 574 (1075)
T ss_pred HHhh-hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh----hh-----HhHHHHHHHHHhhcccc
Confidence 1111 11234555565555433 3 4556889998888888887765421 22 23334555554433222
Q ss_pred ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc----------------------------c
Q 035871 903 TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT----------------------------T 954 (1127)
Q Consensus 903 ~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~----------------------------~ 954 (1127)
..|+|.-|+.-.-+.|++++.+..+-. .+...++..|++..+ +
T Consensus 575 ~~~dd~~~sy~~~~warmc~ilg~~F~---------p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~ 645 (1075)
T KOG2171|consen 575 QDDDDPLRSYMIAFWARMCRILGDDFA---------PFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGD 645 (1075)
T ss_pred hhhccccHHHHHHHHHHHHHHhchhhH---------hHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCC
Confidence 456778999999999999888765321 123444444444442 0
Q ss_pred C-Cccc-------hhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCccccc----CC
Q 035871 955 G-NVKV-------QWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDY----GK 1022 (1127)
Q Consensus 955 ~-n~KV-------RWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~y----G~ 1022 (1127)
. ++-| +=-||-+||..-.+. ..+-.+|..+|+...+-.+.-+-..-||..|+.++..--++... |.
T Consensus 646 ~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l--k~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p 723 (1075)
T KOG2171|consen 646 KENIGIRTSVLDEKETACEALGEYAKEL--KEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGP 723 (1075)
T ss_pred ceeeeeeehhHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 1 1222 235788888765442 23456899999996566666677788999999998643333322 22
Q ss_pred -chHHHHHHHHHHHHHhccCCCCCCccchhhHHH-------------HHHHHHHHHHHHHHHhhcccccccccccccCCC
Q 035871 1023 -SFSDVVQGLEHILENLGADHLSAPSSFKYRVAL-------------QKQKSSFLEEWFKVLCSSLGESTTHLENENNSV 1088 (1127)
Q Consensus 1023 -~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L-------------~~Q~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 1088 (1127)
+...+|.+.+.++-..-.+..+.-.---+-.++ +.+..+.++.=++.+.....|+.++-+.++.-+
T Consensus 724 ~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed 803 (1075)
T KOG2171|consen 724 EYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEED 803 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 223455555554443211111100000000111 111334444444445555555555444332222
Q ss_pred Cc--------hhHHHHHHHHHHHHHHHhccChhHHHHHHHhhhh
Q 035871 1089 GN--------QKKEMISKAIRSLIEVYEGRKQFAVAKKFEMMDS 1124 (1127)
Q Consensus 1089 ~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1124 (1127)
.+ .+.+-|..++-..+-.+-+-+....+..||++..
T Consensus 804 ~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p 847 (1075)
T KOG2171|consen 804 DDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLP 847 (1075)
T ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHH
Confidence 22 2444455566555555555666778888888753
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=107.65 Aligned_cols=178 Identities=24% Similarity=0.320 Sum_probs=135.4
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+-..+.|.++.||..|.+|||.+|.+. .+..++..+.+|++..||..|+++||.+. + +
T Consensus 79 l~~~l~d~~~~vr~~a~~aLg~~~~~~-----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~------~-----~ 136 (335)
T COG1413 79 LRELLSDEDPRVRDAAADALGELGDPE-----------AVPPLVELLENDENEGVRAAAARALGKLG------D-----E 136 (335)
T ss_pred HHHHhcCCCHHHHHHHHHHHHccCChh-----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcC------c-----h
Confidence 336778899999999999999999654 22223323333899999999999999982 2 4
Q ss_pred HHHHHHHHhcCCCC------------cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 839 KFIHAVEINTHDPL------------VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~------------~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
.++..++..+.|+. ..||..|+-+||++++.... ..+..+ ..|.
T Consensus 137 ~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~-----------------~~l~~~-------l~~~ 192 (335)
T COG1413 137 RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAI-----------------PLLIEL-------LEDE 192 (335)
T ss_pred hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhh-----------------HHHHHH-------HhCc
Confidence 66788888887766 36899999999999875211 112222 2344
Q ss_pred c-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchh
Q 035871 907 D-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985 (1127)
Q Consensus 907 D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~ 985 (1127)
+ .||..|+.+||.++ +. ...+...+.+.+.+.+..|||-++.+||.++..+
T Consensus 193 ~~~vr~~Aa~aL~~~~--------------~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~----------- 244 (335)
T COG1413 193 DADVRRAAASALGQLG--------------SE---NVEAADLLVKALSDESLEVRKAALLALGEIGDEE----------- 244 (335)
T ss_pred hHHHHHHHHHHHHHhh--------------cc---hhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-----------
Confidence 3 69999999999995 11 1356678889999999999999999999999654
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 986 SVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 986 ~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
....|+..+.+ .++.+|+.++.+++
T Consensus 245 -~~~~l~~~l~~-~~~~~~~~~~~~~~ 269 (335)
T COG1413 245 -AVDALAKALED-EDVILALLAAAALG 269 (335)
T ss_pred -hHHHHHHHHhc-cchHHHHHHHHHhc
Confidence 67788999864 77889999999997
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=110.46 Aligned_cols=173 Identities=13% Similarity=0.001 Sum_probs=112.3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|-..+.|.++.||.++.++||.|+... +.. .+..+++|++|.||.++..++|.. +.
T Consensus 91 L~~~L~d~~~~vr~aaa~ALg~i~~~~-----------a~~-~L~~~L~~~~p~vR~aal~al~~r------~~------ 146 (410)
T TIGR02270 91 VLAVLQAGPEGLCAGIQAALGWLGGRQ-----------AEP-WLEPLLAASEPPGRAIGLAALGAH------RH------ 146 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCchH-----------HHH-HHHHHhcCCChHHHHHHHHHHHhh------cc------
Confidence 446778889999999999999998765 222 234667999999999999999985 22
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
+..+.++..++|++..||..|..+||.+++.- .+..|... ..+.++.||..|+.+||
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~--------------------a~~~L~~a---l~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPRRL--------------------SESTLRLY---LRDSDPEVRFAALEAGL 203 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc--------------------chHHHHHH---HcCCCHHHHHHHHHHHH
Confidence 34566777788999999999999999998641 12223221 13344479999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.++. +.++..|+...+....-++..++.+++.+..+ .+.+.|..++++
T Consensus 204 ~lG~-------------------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~------------~a~~~L~~ll~d- 251 (410)
T TIGR02270 204 LAGS-------------------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP------------DAQAWLRELLQA- 251 (410)
T ss_pred HcCC-------------------HhHHHHHHHHHhccCccHHHHHHHHHHhCCch------------hHHHHHHHHhcC-
Confidence 8841 23344444444444444444444454444221 344555555543
Q ss_pred CChHHHHHHHHHhc
Q 035871 999 SNFKIRIQAAAALA 1012 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~ 1012 (1127)
++ ||..|+.|||
T Consensus 252 ~~--vr~~a~~AlG 263 (410)
T TIGR02270 252 AA--TRREALRAVG 263 (410)
T ss_pred hh--hHHHHHHHHH
Confidence 21 5555555555
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-08 Score=128.01 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=150.8
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc---
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQ--- 829 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~--- 829 (1127)
+|..+|.++++.+|..|+.+|+||+.. +.+.|.. ++..| ..++++.++.+|..|++||++++....
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~-----~~qir~iV~~aGAIppL-V~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCH-----SEDIRACVESAGAVPAL-LWLLKNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC-----cHHHHHHHHHCCCHHHH-HHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence 455677888999999999999998752 2222222 23433 356677778888888888887742111
Q ss_pred ----------------------------cccchHHH------HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc
Q 035871 830 ----------------------------VSQSAEII------DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID 875 (1127)
Q Consensus 830 ----------------------------L~~d~~fv------~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~ 875 (1127)
+.+...+. ...++.|...++.++..++..|+|+|+|+|..-.....
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 00110001 23567777788899999999999999999974211100
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC
Q 035871 876 DFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG 955 (1127)
Q Consensus 876 ~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~ 955 (1127)
. .+....+..+++- +...+++|+..|+.||+|+.+..+.++. -....+.+|..|++.++++
T Consensus 646 a---------vv~agaIpPLV~L---Lss~~~~v~keAA~AL~nL~~~~~~~q~-------~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 646 S---------LATDEIINPCIKL---LTNNTEAVATQSARALAALSRSIKENRK-------VSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred H---------HHHcCCHHHHHHH---HhcCChHHHHHHHHHHHHHHhCCCHHHH-------HHHHHcCCHHHHHHHHhCC
Confidence 0 1111122233321 1346668999999999999853333210 0012345799999999999
Q ss_pred CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 956 NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
+.+|+=.|..||+|++..+..... . -...+++.|..+|+ +.+.++|.+||+||..
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~e-i-~~~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAE-A-LAEDIILPLTRVLR-EGTLEGKRNAARALAQ 761 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHH-H-HhcCcHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 999999999999999987643210 0 12345899999996 5789999999999953
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-07 Score=106.94 Aligned_cols=175 Identities=16% Similarity=0.072 Sum_probs=128.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...+.+.+|.||.++..+++..+.+.+.. + ..+++|+++.||++|+|+||.+. .
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~~~~------------L-~~~L~d~d~~Vra~A~raLG~l~------~----- 176 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDPGPA------------L-EAALTHEDALVRAAALRALGELP------R----- 176 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChHHH------------H-HHHhcCCCHHHHHHHHHHHHhhc------c-----
Confidence 5667889999999999999999977554321 2 24568999999999999999983 2
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
..+++.|...+.|.+..||.-|+|+|+.+++.-. +..+... .+..+..++.-+..++
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A--------------------~~~l~~~---~~~~g~~~~~~l~~~l 233 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLA--------------------WGVCRRF---QVLEGGPHRQRLLVLL 233 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhH--------------------HHHHHHH---HhccCccHHHHHHHHH
Confidence 3566667777899999999999999999886311 2222221 1344445554444444
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
+.. | .++++..|+..+++.+ ||..++.|||.++.- ..++.|+..+.+
T Consensus 234 al~---------------~----~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d 280 (410)
T TIGR02270 234 AVA---------------G----GPDAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMRE 280 (410)
T ss_pred HhC---------------C----chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcC
Confidence 443 1 1367777777777765 999999999999854 478899999976
Q ss_pred CCChHHHHHHHHHhcCCC
Q 035871 998 SSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~ 1015 (1127)
.. +|-.|..|+..+.
T Consensus 281 ~~---~aR~A~eA~~~It 295 (410)
T TIGR02270 281 PP---WARLAGEAFSLIT 295 (410)
T ss_pred cH---HHHHHHHHHHHhh
Confidence 54 9999999997543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=86.42 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=68.1
Q ss_pred cCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCC
Q 035871 904 KDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMD 982 (1127)
Q Consensus 904 ~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~ 982 (1127)
+|.+ .||.+|+++||++. .+++++.|++.++++|..||+.|+.|||+++.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------- 60 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG-------------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---------- 60 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT-------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------
T ss_pred cCCCHHHHHHHHHHHHHcC-------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 4554 79999999999773 46789999999999999999999999999973
Q ss_pred chhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 983 WAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 983 wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+.+++.|..++.++++.-||..|+.|||
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4588999999999999999999999996
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.7e-07 Score=104.97 Aligned_cols=231 Identities=22% Similarity=0.177 Sum_probs=148.9
Q ss_pred HHHHccCChhHHHHHHHHHhccchh-HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSS-VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~-~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+..+.-.++..+-.+..++-.+.+. .+..+..--+..++..++..+.++.+|.++..|+|||-++..-.+-....-.-.
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 3344444444455555554443221 111111122335666677777789999999999999999964322211110013
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC--chhhhhHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG--DKIKSNAVRG 916 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~--DKVRsnAvRA 916 (1127)
.+++.++..+..++..||-.|.||||||.-.=.... +-.++...+..|+. ....+ .+...|++-+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R---------d~vl~~g~l~pLl~----~l~~~~~~~~lRn~tW~ 218 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR---------DYVLSCGALDPLLR----LLNKSDKLSMLRNATWT 218 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH---------HHHHhhcchHHHHH----HhccccchHHHHHHHHH
Confidence 567788889999999999999999999974211000 00122222333322 23333 3699999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh--ccccccccCCCchhHHHHHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF--LNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~--~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
|.||.+--.+.+ .-+..+.++++|...+.+.|..|.-+||+||+.+- .|+.+..- --.-+++.|..+
T Consensus 219 LsNlcrgk~P~P--------~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v---i~~gvv~~LV~l 287 (514)
T KOG0166|consen 219 LSNLCRGKNPSP--------PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV---IDAGVVPRLVDL 287 (514)
T ss_pred HHHHHcCCCCCC--------cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH---HHccchHHHHHH
Confidence 999986664322 12357889999999999999999999999999885 44443210 112367899999
Q ss_pred HhcCCChHHHHHHHHHhcCCC
Q 035871 995 LRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
|.+ +..+|++-|-+|+|.+.
T Consensus 288 L~~-~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 288 LGH-SSPKVVTPALRAIGNIV 307 (514)
T ss_pred HcC-CCcccccHHHhhcccee
Confidence 976 55689999999999765
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-05 Score=90.55 Aligned_cols=368 Identities=15% Similarity=0.141 Sum_probs=227.8
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 495 LHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 495 LHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
.-.+|...|.+ +++.+...+|+|++.+. .+++++.+...+...+.+.+ .+ +|..|..|+..++..
T Consensus 80 ~~n~l~kdl~~-~n~~~~~lAL~~l~~i~--------~~~~~~~l~~~v~~ll~~~~-----~~-VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 80 IINSLQKDLNS-PNPYIRGLALRTLSNIR--------TPEMAEPLIPDVIKLLSDPS-----PY-VRKKAALALLKIYRK 144 (526)
T ss_dssp HHHHHHHHHCS-SSHHHHHHHHHHHHHH---------SHHHHHHHHHHHHHHHHSSS-----HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCHHHHHHHHhhhhhhc--------ccchhhHHHHHHHHHhcCCc-----hH-HHHHHHHHHHHHhcc
Confidence 44556667776 45568889999999987 35678888888877776432 23 777888888877765
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHh
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKA 654 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~ 654 (1127)
.|..-+- . |+..+.+.. .+..+.|+..|+.++..+ +..|.........+...+++++..
T Consensus 145 ~p~~~~~------------------~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 145 DPDLVED------------------E-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSD 203 (526)
T ss_dssp CHCCHHG------------------G-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTC
T ss_pred CHHHHHH------------------H-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccc
Confidence 3322110 0 233333333 233478889999999988 544544323333444444444411
Q ss_pred hCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccch
Q 035871 655 ASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESS 734 (1127)
Q Consensus 655 ~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~ 734 (1127)
. + .-.+...+++|..+ . ....
T Consensus 204 ~---~-----------------~~~q~~il~~l~~~-------~--------------------------------~~~~ 224 (526)
T PF01602_consen 204 P---D-----------------PWLQIKILRLLRRY-------A--------------------------------PMEP 224 (526)
T ss_dssp C---S-----------------HHHHHHHHHHHTTS-------T--------------------------------SSSH
T ss_pred c---c-----------------hHHHHHHHHHHHhc-------c--------------------------------cCCh
Confidence 1 0 01122233333211 0 0000
Q ss_pred hhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHH
Q 035871 735 EDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVR 814 (1127)
Q Consensus 735 ~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VR 814 (1127)
.. ... ..+++. +...+++.++.|+-.++.++..+.+..- ....++..+ ..++.+.+++||
T Consensus 225 ~~----------~~~--~~~i~~-l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L-~~lL~s~~~nvr 284 (526)
T PF01602_consen 225 ED----------ADK--NRIIEP-LLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPL-IKLLSSSDPNVR 284 (526)
T ss_dssp HH----------HHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHH-HHHHTSSSHHHH
T ss_pred hh----------hhH--HHHHHH-HHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHH-HHHhhcccchhe
Confidence 00 000 234443 3346667788999999999998765431 234455544 477789999999
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHH
Q 035871 815 SAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMA 893 (1127)
Q Consensus 815 aAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~ 893 (1127)
..|.++|..++.. ...++. .....+..+ .|++..||.+|.-.|.++++.--. ...+.
T Consensus 285 ~~~L~~L~~l~~~-----~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----------------~~Il~ 342 (526)
T PF01602_consen 285 YIALDSLSQLAQS-----NPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----------------KEILD 342 (526)
T ss_dssp HHHHHHHHHHCCH-----CHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----------------HHHHH
T ss_pred hhHHHHHHHhhcc-----cchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccch----------------hhHHH
Confidence 9999999998631 122222 112222233 488899999999999999985211 12344
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 894 SLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 894 ~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
.|.+.+- ..++..+|..+++++|.+..-... ..+..++.+++.++.++-.+.=.+...+-+++.+
T Consensus 343 eL~~~l~--~~~d~~~~~~~i~~I~~la~~~~~-------------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 343 ELLKYLS--ELSDPDFRRELIKAIGDLAEKFPP-------------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HHHHHHH--HC--HHHHHHHHHHHHHHHHHHGS-------------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred HHHHHHH--hccchhhhhhHHHHHHHHHhccCc-------------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 4444420 112335999999999999744422 1577889999999888788888888999888865
Q ss_pred ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHH
Q 035871 974 ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSD 1026 (1127)
Q Consensus 974 ~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~ 1026 (1127)
. ..-...+...|+..+.+.++-.++..+++-+| .||.....
T Consensus 408 ~------~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilG------Ey~~~~~~ 448 (526)
T PF01602_consen 408 N------PELREKILKKLIELLEDISSPEALAAAIWILG------EYGELIEN 448 (526)
T ss_dssp S------TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHH------HHCHHHTT
T ss_pred C------hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhc------ccCCcccc
Confidence 3 22246689999999998888999999999999 68866544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=89.15 Aligned_cols=285 Identities=17% Similarity=0.189 Sum_probs=173.9
Q ss_pred HccCChhHHHHHHHHHhcc--chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHH
Q 035871 763 LQHISSMVRTAAVTCFAGI--TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDK 839 (1127)
Q Consensus 763 l~d~~~~VRaaAc~cLa~I--gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ 839 (1127)
++.++=.-|.+|.=|||.| |++.-...|... -.+++++ .++.|..-.||-.|+++||.+. ..|.-.........
T Consensus 373 i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~--qalp~ii-~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI--QALPSII-NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh--hhhHHHH-HHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 4566666799999999996 444322222111 1233333 5667999999999999999997 33444444555666
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc--C-Cc-hhhhhHHH
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK--D-GD-KIKSNAVR 915 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D-~D-KVRsnAvR 915 (1127)
.+.+++..+.| ++.|-.+++||+-++.++.-....+.+-.+. .+.+=+..+..|++ .++ | ++ ..|+.|..
T Consensus 450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~-~t~~y~~ii~~Ll~----~tdr~dgnqsNLR~AAYe 523 (859)
T KOG1241|consen 450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDP-ATPFYEAIIGSLLK----VTDRADGNQSNLRSAAYE 523 (859)
T ss_pred HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCc-cchhHHHHHHHHHh----hccccccchhhHHHHHHH
Confidence 77788877766 6899999999999999976543322110110 11122233444444 444 2 44 79999999
Q ss_pred HHhhhhhccccCCCC---------------------------------------------CCCCCCChhHHHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSS---------------------------------------------HPASLGDSRWLERIVQALVS 950 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~---------------------------------------------~~~~~g~~~~~E~~i~aLlk 950 (1127)
|||.|.++.+.+-.. +-+...-+...+.++..|+.
T Consensus 524 ALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflr 603 (859)
T KOG1241|consen 524 ALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLR 603 (859)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 999998777753310 00000112345666667777
Q ss_pred hhcc-CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHH-------Hh-----------
Q 035871 951 CVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAA-------AL----------- 1011 (1127)
Q Consensus 951 ~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~-------AL----------- 1011 (1127)
.++. ++.-|.=-|=+|+|-+..+ +..+...+.+..+|-|..-|.++..+-|-..|.. ||
T Consensus 604 i~~s~~s~~v~e~a~laV~tl~~~--Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~ 681 (859)
T KOG1241|consen 604 IFESKRSAVVHEEAFLAVSTLAES--LGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDEL 681 (859)
T ss_pred HHcCCccccchHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 6655 5566666666666655432 1122234566667777777766666666554422 22
Q ss_pred --------cCCC-ccc--------------ccCCchHHHHHHHHHHHHHhccC--CCCCCccchhhHHHHHH
Q 035871 1012 --------AVPS-SVS--------------DYGKSFSDVVQGLEHILENLGAD--HLSAPSSFKYRVALQKQ 1058 (1127)
Q Consensus 1012 --------~~p~-~R~--------------~yG~~~~~V~~~L~~aLe~~~s~--~~~df~Eykyrd~L~~Q 1058 (1127)
+.|. +|. ..|.+|...|+.++..|+.+++- +..||..--|.+.|++-
T Consensus 682 mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~ 753 (859)
T KOG1241|consen 682 MTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREG 753 (859)
T ss_pred HHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH
Confidence 1111 121 24567889999999999988642 33557777888999987
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=101.79 Aligned_cols=223 Identities=18% Similarity=0.192 Sum_probs=148.4
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAV 844 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aL 844 (1127)
+.++.+|-.|+-||.+|-+..-+.--.--..-++. ++..++...+..||--|++|||++.-...-..|-..-..++..|
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp-~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVP-IFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchH-HHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 55699999999999998664422110000011222 33467789999999999999999974333222221122345666
Q ss_pred HHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhh
Q 035871 845 EINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSR 922 (1127)
Q Consensus 845 l~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~ 922 (1127)
+..+..+.. ....++.|+|.|+|..-. | ..+-+.+..++.+..+..+..| .|...|+=|+.+|.
T Consensus 200 l~~l~~~~~~~~lRn~tW~LsNlcrgk~---------P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs- 265 (514)
T KOG0166|consen 200 LRLLNKSDKLSMLRNATWTLSNLCRGKN---------P----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT- 265 (514)
T ss_pred HHHhccccchHHHHHHHHHHHHHHcCCC---------C----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-
Confidence 666655543 677799999999996421 1 1112345666666667777777 79999999999995
Q ss_pred ccccCCCCCCCCCCChhHHH-----HHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 923 FVKYTSSSHPASLGDSRWLE-----RIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 923 ~l~~~~~~~~~~~g~~~~~E-----~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
+ |..+.++ +.+..|++.|.....+|+-=|-.|+||+-.-........ --..+++.|..++..
T Consensus 266 ----d--------g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v-i~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 266 ----D--------GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV-INSGALPVLSNLLSS 332 (514)
T ss_pred ----c--------CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH-HhcChHHHHHHHhcc
Confidence 1 2122222 346779999999999999999999999754332221100 012356888999987
Q ss_pred CCChHHHHHHHHHhcCCC
Q 035871 998 SSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~ 1015 (1127)
.+.-++|-.|+..++.+.
T Consensus 333 s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 333 SPKESIKKEACWTISNIT 350 (514)
T ss_pred CcchhHHHHHHHHHHHhh
Confidence 788889999999999764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0028 Score=76.83 Aligned_cols=149 Identities=23% Similarity=0.385 Sum_probs=102.8
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFA 878 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~ 878 (1127)
+++.++.|+-|.||-+|.--||.++ ||+.... +.++++.-+..++.-.+.+|=.+|.||+|.|+-.+..++.
T Consensus 666 lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p---~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--- 739 (885)
T KOG2023|consen 666 LLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP---NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK--- 739 (885)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh---
Confidence 6678899999999999999999997 4444433 3578888888889999999999999999999988776653
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCc
Q 035871 879 FKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNV 957 (1127)
Q Consensus 879 ~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~ 957 (1127)
+ -+ ..++..|+.. ++ .+..+ .+-.|.+-.+|.|+..-+.+-.+ -.+..++
T Consensus 740 --~----~v-~~vl~~L~~i-in-~~~~~~tllENtAITIGrLg~~~Pe~vAp---------~l~~f~~----------- 790 (885)
T KOG2023|consen 740 --Q----YV-SPVLEDLITI-IN-RQNTPKTLLENTAITIGRLGYICPEEVAP---------HLDSFMR----------- 790 (885)
T ss_pred --h----HH-HHHHHHHHHH-hc-ccCchHHHHHhhhhhhhhhhccCHHhcch---------hHHHHHH-----------
Confidence 2 12 2234444432 22 23333 48899999999998555432210 1222222
Q ss_pred cchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 958 KVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 958 KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
.| |+.|.++..|+ ..+++|..+|+.+.
T Consensus 791 --pW--c~sl~~i~Dne--------EK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 791 --PW--CTSLRNIDDNE--------EKESAFRGLCNMIN 817 (885)
T ss_pred --HH--HHHhcccccch--------hHHHHHHHHHHhee
Confidence 23 66677766654 45778888888873
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.028 Score=70.81 Aligned_cols=519 Identities=19% Similarity=0.199 Sum_probs=267.5
Q ss_pred CCCccCCCCCCCCccchhhhhhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHH
Q 035871 371 SDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMA 450 (1127)
Q Consensus 371 SDSd~SDse~~~~~~~r~~~skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~a 450 (1127)
+|+||||.|- ..=|||.+|+.|+.++.....-.+..+...+= |.| -.=.+|....||+-
T Consensus 334 ~~deYsDDeD--------~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~------------p~l-I~RfkEREEnVk~d 392 (1233)
T KOG1824|consen 334 QDDEYSDDED--------MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLG------------PAL-ISRFKEREENVKAD 392 (1233)
T ss_pred hccccccccc--------hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhC------------HHH-HHHHHHHhhhHHHH
Confidence 4788998773 34699999999999988754322222222211 122 23468899999999
Q ss_pred HHHHHHHHhcCCchhhhhhhhh---cc-ccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcc
Q 035871 451 SASTLAAMLDGPSTVFLQVAEY---KE-SIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCT 526 (1127)
Q Consensus 451 A~~~LsaLL~gsk~~llq~AE~---~e-s~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~T 526 (1127)
...+.-++|....+. .....+ .+ ++.+.+-.-++.+.-.++..+|+-|- |++..+..-++--|..||-.-
T Consensus 393 vf~~yi~ll~qt~~~-~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr-----~ks~kt~~~cf~lL~eli~~l 466 (1233)
T KOG1824|consen 393 VFHAYIALLKQTRPV-IEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR-----EKSVKTRQGCFLLLTELINVL 466 (1233)
T ss_pred HHHHHHHHHHcCCCC-cccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh-----hccccchhhHHHHHHHHHHhC
Confidence 999999999886552 222222 11 22233445678888889999998844 888887777777777777776
Q ss_pred cCCCCC--CCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHH
Q 035871 527 PYSRMP--GELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLF 604 (1127)
Q Consensus 527 PY~RL~--~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~ 604 (1127)
|-.=-+ +.++|.++.. ..+++--.+.++-+|.++..++.+.+|
T Consensus 467 p~~l~~~~~slvpgI~~~--------l~DkSsss~~ki~~L~fl~~~L~s~~p--------------------------- 511 (1233)
T KOG1824|consen 467 PGALAQHIPSLVPGIIYS--------LNDKSSSSNLKIDALVFLYSALISHPP--------------------------- 511 (1233)
T ss_pred cchhhhcccccchhhhhh--------cCCccchHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 632111 2333333321 233333334556666666666555443
Q ss_pred HHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHH
Q 035871 605 TLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAI 684 (1127)
Q Consensus 605 ~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~ 684 (1127)
....+|...+...+..+.++- + .++..+|.
T Consensus 512 ------------------------------~~fhp~~~~Ls~~v~~aV~d~------------------f--yKisaEAL 541 (1233)
T KOG1824|consen 512 ------------------------------EVFHPHLSALSPPVVAAVGDP------------------F--YKISAEAL 541 (1233)
T ss_pred ------------------------------hhcccchhhhhhHHHHHhcCc------------------h--HhhhHHHH
Confidence 222223322222222221100 0 02333344
Q ss_pred HHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH-
Q 035871 685 KVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL- 763 (1127)
Q Consensus 685 klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l- 763 (1127)
-+..++.|.+-- ++.+..+| . ..|...|+.-.+.++-
T Consensus 542 ~v~~~lvkvirp------l~~~~~~d--------------------~----------------~~~v~~m~~~tl~rL~a 579 (1233)
T KOG1824|consen 542 LVCQQLVKVIRP------LQPPSSFD--------------------A----------------SPYVKTMYDCTLQRLKA 579 (1233)
T ss_pred HHHHHHHHHhcc------cCCCccCC--------------------C----------------ChhHHHHHHHHHHHHhc
Confidence 444444443310 00000011 0 0122334443442221
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
+|.+-.||..|.+|.|++-..--..|..+... |+. ++..-+ .+..-|.+|+||+-.+..-|---+=..-....++.
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~-~L~-il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~ 655 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNELPR-TLP-ILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPE 655 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHH-HHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHH
Confidence 46678999999999998644333333333322 221 121222 55668999999999987544322212223344444
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhc-ccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHC-IDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~-~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
+.. -+ .|...+|++-+-..... +..+ ...+...++..++.-...+..+.| .|-.+|+--|-.+.
T Consensus 656 l~~-------fl-rK~~r~lr~~~l~a~~~L~~~~------~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 656 LAS-------FL-RKNQRALRLATLTALDKLVKNY------SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLA 721 (1233)
T ss_pred HHH-------HH-HHHHHHHHHHHHHHHHHHHHHH------hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 431 12 36777887766532211 1110 114566667777666666667777 58888877776664
Q ss_pred hccccCC--------------CCCCCCCCC-hhHHHHHHHHHH-------------Hhhcc---CCc--cchhhHHHHHH
Q 035871 922 RFVKYTS--------------SSHPASLGD-SRWLERIVQALV-------------SCVTT---GNV--KVQWNVCRALS 968 (1127)
Q Consensus 922 ~~l~~~~--------------~~~~~~~g~-~~~~E~~i~aLl-------------k~l~~---~n~--KVRWNAc~ALG 968 (1127)
..-+..- +..|.-.|. ..-....+++|+ .+++. ++. -+---|=|++.
T Consensus 722 ~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 722 IIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred hcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 3222100 011221121 111233333332 22211 000 12222333333
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHh-cCCChHHHHHHHHHhcCCCcccc--------------cCCchHHHHHHHHH
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLR-DSSNFKIRIQAAAALAVPSSVSD--------------YGKSFSDVVQGLEH 1033 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~-~~~NFKVRi~AA~AL~~p~~R~~--------------yG~~~~~V~~~L~~ 1033 (1127)
..-.- +-.....-+..+...|++-++ ...|--+|.=|--.||..+.|-+ ||+.+++|-+|...
T Consensus 802 ~cvA~--Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ 879 (1233)
T KOG1824|consen 802 KCVAA--LTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASY 879 (1233)
T ss_pred HHHHH--HHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHH
Confidence 32110 000111223444455544443 34455667778888888876654 55668889999999
Q ss_pred HHHHhccCCCCCCccchhhHHHHHHHHHHH
Q 035871 1034 ILENLGADHLSAPSSFKYRVALQKQKSSFL 1063 (1127)
Q Consensus 1034 aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l 1063 (1127)
||.++...++++|.-|=-..-=-++++++|
T Consensus 880 ALGsl~vgnl~~yLpfil~qi~sqpk~QyL 909 (1233)
T KOG1824|consen 880 ALGSLAVGNLPKYLPFILEQIESQPKRQYL 909 (1233)
T ss_pred HhhhhhcCchHhHHHHHHHHHhcchHhHHH
Confidence 999987778888876643333333344443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=77.32 Aligned_cols=81 Identities=30% Similarity=0.284 Sum_probs=64.2
Q ss_pred HHH-ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHH
Q 035871 761 LIL-QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDK 839 (1127)
Q Consensus 761 ~~l-~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ 839 (1127)
..+ .++++.||..|+.+|+.++... ++..+ ..+++|+++.||.+|+++||.+. + ..
T Consensus 6 ~~l~~~~~~~vr~~a~~~L~~~~~~~-----------~~~~L-~~~l~d~~~~vr~~a~~aL~~i~-------~----~~ 62 (88)
T PF13646_consen 6 QLLQNDPDPQVRAEAARALGELGDPE-----------AIPAL-IELLKDEDPMVRRAAARALGRIG-------D----PE 62 (88)
T ss_dssp HHHHTSSSHHHHHHHHHHHHCCTHHH-----------HHHHH-HHHHTSSSHHHHHHHHHHHHCCH-------H----HH
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHh-----------HHHHH-HHHHcCCCHHHHHHHHHHHHHhC-------C----HH
Confidence 344 7889999999999999998653 23333 46679999999999999999882 2 46
Q ss_pred HHHHHHHhcCC-CCcchhchHHHHHH
Q 035871 840 FIHAVEINTHD-PLVSVRITASWALA 864 (1127)
Q Consensus 840 ai~aLl~~l~D-~~~~VRikAAWALG 864 (1127)
+++.|...+.| ++..||..|++|||
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 77888887765 45667999999997
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-05 Score=92.56 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=76.5
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-ccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQV 830 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L 830 (1127)
..+++. +-.-++++++.+|+.|.+++++|+...+ .+.++.. +..++.|++|.||.+|+-++..+. .+|.+
T Consensus 78 ~l~~n~-l~kdl~~~n~~~~~lAL~~l~~i~~~~~-------~~~l~~~-v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 78 ILIINS-LQKDLNSPNPYIRGLALRTLSNIRTPEM-------AEPLIPD-VIKLLSDPSPYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp HHHHHH-HHHHHCSSSHHHHHHHHHHHHHH-SHHH-------HHHHHHH-HHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred HHHHHH-HHHhhcCCCHHHHHHHHhhhhhhcccch-------hhHHHHH-HHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence 344554 3356889999999999999999985442 2334443 447778999999999999999986 44444
Q ss_pred ccchHHHHH-HHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 831 SQSAEIIDK-FIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 831 ~~d~~fv~~-ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
+.. +++.+...+.|+++.|+..|.-+|..+
T Consensus 149 ------~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 149 ------VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ------HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 344 578888888999999999999999988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=87.52 Aligned_cols=226 Identities=21% Similarity=0.192 Sum_probs=150.8
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cc--cccc--cc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CF--PQVS--QS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~--p~L~--~d 833 (1127)
|.....+-++.||+.|+.+|=.++. .| .||+ .|.+.. ...+.|++..||.||++.+-+|. .+ |.-+ ++
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~-kL~~----~~Y~~A-~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GF-KLSK----ACYSRA-VKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cc-cccH----HHHHHH-HHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 3345567789999999999888776 43 5664 233322 25679999999999999998886 44 2222 23
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh---hhh-----c-cc---------c-----cCCC-CCCcc----
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDS---IRH-----C-ID---------D-----FAFK-PSIDS---- 885 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~---L~~-----~-~~---------~-----~~~~-~~~~~---- 885 (1127)
...+.++-..++.++.|-+..||..||-+||.+... ++. . |. + +... =+.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 334556667788899999999999999999988763 111 0 00 0 0000 00000
Q ss_pred cccHHH----HHHHHH-----HHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC
Q 035871 886 NANSHL----MASLTE-----SALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG 955 (1127)
Q Consensus 886 ~is~~l----L~~L~e-----~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~ 955 (1127)
.++.+. -..++. +.+...+|.- .||.+||.+++.|.. -.+.+.+++++-|++-++|.
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~-------------ssP~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT-------------SSPGFAVRALDFLVDMFNDE 422 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc-------------CCCCcHHHHHHHHHHHhccH
Confidence 011110 011111 1122234544 699999999999951 12345789999999999999
Q ss_pred CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 956 NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+.||--|.+||-.+-.+=.|. +.-.++.+..|. +.+-+||-..=.=|+
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~i~-------eeql~~il~~L~-D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLAIR-------EEQLRQILESLE-DRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHHHHheec-------HHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence 9999999999998887774333 556788899995 578899988777776
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-06 Score=71.53 Aligned_cols=55 Identities=29% Similarity=0.317 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 811 ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 811 ~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
|.||.+|+++||.+. ..+-.....++..+++.|...++|++..||.+|+||||||
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999999964 1111223447788999999999999999999999999997
|
... |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.085 Score=66.71 Aligned_cols=504 Identities=17% Similarity=0.200 Sum_probs=245.2
Q ss_pred chhhhhhhHHHHHHHHH-HHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCC--
Q 035871 386 DSVQSSKVRVAALVCLQ-DLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGP-- 462 (1127)
Q Consensus 386 ~r~~~skVR~~AL~~L~-al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gs-- 462 (1127)
++...+..++.||.+|. +|+.+.|+.|+.|-+.+.| +++.-..||-+|+-..|+-+...+..-.
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~-------------~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSP-------------PVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhh-------------HHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 45567889999999998 5667788999988877653 4466789999999999988887763221
Q ss_pred ---------chhhhhhhh---------hcc-ccCCcccccchH---HHHHHH-HHHHHHHHHHHhcccchHHHHHHHHHH
Q 035871 463 ---------STVFLQVAE---------YKE-SIKCGSFMPLST---SYGHII-MQLHNGIIYLIQRETHDRLLASLFKIL 519 (1127)
Q Consensus 463 ---------k~~llq~AE---------~~e-s~~~~SFTsfS~---tLg~~l-~eLHr~Ll~aL~~E~~~~vLtqlLKcL 519 (1127)
++|+-.+-. +.+ .-+-+.-+-++. .+|.++ .++-++|...+.+=.+-.+.....|++
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAl 633 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKAL 633 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHH
Confidence 222221100 000 000111111111 122222 455556665555555555555566666
Q ss_pred HHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCC
Q 035871 520 MPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVD 597 (1127)
Q Consensus 520 a~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~ 597 (1127)
... ...|-+==....+.+++..+..+++.. +-+++.+.++.+..++.... ...+..+.++.|++
T Consensus 634 t~I-a~S~l~i~l~~~l~~il~~l~~flrK~------~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~------- 699 (1233)
T KOG1824|consen 634 TLI-AMSPLDIDLSPVLTEILPELASFLRKN------QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELP------- 699 (1233)
T ss_pred HHH-HhccceeehhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh-------
Confidence 533 333321111223444444444444321 12355555555555553322 22222233333321
Q ss_pred CcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccch
Q 035871 598 KRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGE 677 (1127)
Q Consensus 598 ~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~ 677 (1127)
.|+..++ ..+--.|+-+|.-++.++|..+..+-..+.+-+..+++.-. ++|
T Consensus 700 -------~Lisesd----lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl-----------------lqg- 750 (1233)
T KOG1824|consen 700 -------PLISESD----LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL-----------------LQG- 750 (1233)
T ss_pred -------hhhhHHH----HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc-----------------ccc-
Confidence 1111110 22334567788888999999998888777766666664211 222
Q ss_pred hHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccc----------hhhhhhhhhhhhcc
Q 035871 678 KVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQES----------SEDIKESAKAFQSG 747 (1127)
Q Consensus 678 ~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~----------~~~~~~~~~~~~l~ 747 (1127)
. |...+.+..-+++. .+..+++...+ .....+|-|++.. ...|..-+. +.
T Consensus 751 ~----al~~~l~~f~alV~-t~~~~l~y~~l------------~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt-~~-- 810 (1233)
T KOG1824|consen 751 G----ALSALLLFFQALVI-TKEPDLDYISL------------LSLLTAPVYEQVTDGLHKQAYYSIAKCVAALT-CA-- 810 (1233)
T ss_pred h----HHHHHHHHHHHHHh-cCCCCccHHHH------------HHHHcCCcccccccchhHHHHHHHHHHHHHHH-Hh--
Confidence 1 11111122222322 11111111111 1112344455431 101110000 00
Q ss_pred hhhhHHHHHhhHHHHHc--cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 748 SEQWSEMIEKHMPLILQ--HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 748 ~~~W~~iie~~Lp~~l~--d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
++.=..-+-+-|..-++ ..+..+|--|.=.||.+|-.. .-.| .+++- .++..+++..+..|++||.-|||.+.
T Consensus 811 ~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~-~~s~--~~e~~--~~iieaf~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 811 CPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRK-DLSP--QNELK--DTIIEAFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred ccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCC-CCCc--chhhH--HHHHHHcCCChHHHHHHHHHHhhhhh
Confidence 00000111111222333 234567777777788877543 1112 12221 13446778899999999999999984
Q ss_pred cccccccchHHH-------------------------------------HHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 826 CFPQVSQSAEII-------------------------------------DKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 826 ~~p~L~~d~~fv-------------------------------------~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
. ++-..|+ ++.-.-|.+..+....-+|.=-|.-||.++-
T Consensus 886 v----gnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l 961 (1233)
T KOG1824|consen 886 V----GNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL 961 (1233)
T ss_pred c----CchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh
Confidence 2 2222121 1111111122222222333333333333331
Q ss_pred hhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHH
Q 035871 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQAL 948 (1127)
Q Consensus 869 ~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aL 948 (1127)
++ +..++.+|=. . ........|+.+|-|.-... ..++ .++ + ...+..|...
T Consensus 962 ----------~e-------pesLlpkL~~-~--~~S~a~~~rs~vvsavKfsi---sd~p--~~i---d-~~lk~~ig~f 1012 (1233)
T KOG1824|consen 962 ----------IE-------PESLLPKLKL-L--LRSEASNTRSSVVSAVKFSI---SDQP--QPI---D-PLLKQQIGDF 1012 (1233)
T ss_pred ----------CC-------hHHHHHHHHH-H--hcCCCcchhhhhhheeeeee---cCCC--Ccc---C-HHHHHHHHHH
Confidence 01 1122333211 1 12333456666666554332 1110 010 1 2467778889
Q ss_pred HHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 035871 949 VSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAAL 1011 (1127)
Q Consensus 949 lk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL 1011 (1127)
++.++|++.+||--|-.++-..-.|. +..-..+++.|+..|-+ .-|||-.=..-.
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSaahNK------pslIrDllpeLLp~Ly~--eTkvrkelIreV 1067 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSAAHNK------PSLIRDLLPELLPLLYS--ETKVRKELIREV 1067 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHccC------HhHHHHHHHHHHHHHHH--hhhhhHhhhhhh
Confidence 99999999999999999998877774 22346688888888853 457886654443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0071 Score=72.46 Aligned_cols=452 Identities=17% Similarity=0.173 Sum_probs=237.9
Q ss_pred hhHHHHHHHHH-HHHhhCC---ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhh
Q 035871 392 KVRVAALVCLQ-DLCRADP---KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFL 467 (1127)
Q Consensus 392 kVR~~AL~~L~-al~k~~~---K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~ll 467 (1127)
.+|+.|-..|. .|.-.+| |..-.-|-.+-|+... +-.++.--.|.-|.|+.=.+|++++++|=+=
T Consensus 56 ~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~-----qvK~~al~aL~s~epr~~~~Aaql~aaIA~~------ 124 (858)
T COG5215 56 QLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKE-----QVKGMALRALKSPEPRFCTMAAQLLAAIARM------ 124 (858)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHH-----HHHHHHHHHhcCCccHHHHHHHHHHHHHHHh------
Confidence 58888877776 6776666 3467778876666531 2235556678899999999999999887211
Q ss_pred hhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHh-HhcccCCCCCCCchHHHHHHHHHH
Q 035871 468 QVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPL-ISCTPYSRMPGELMPNLIISLRAR 546 (1127)
Q Consensus 468 q~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~L-Vq~TPY~RL~~~Ll~~vv~~l~~~ 546 (1127)
|- +.+.+- ++-..+..-.-+|.-....-+-|-.++.- .+..| +-+...-+.+.--
T Consensus 125 ---El----p~~~wp-----------~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P------e~li~~sN~il~a 180 (858)
T COG5215 125 ---EL----PNSLWP-----------GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP------EDLIQMSNVILFA 180 (858)
T ss_pred ---hC----ccccch-----------HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH------HHHHHHhhHHHHH
Confidence 00 000110 11111222222232222211111111111 22222 1111111111111
Q ss_pred HhhcC-CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHH
Q 035871 547 IEEGF-PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQA 625 (1127)
Q Consensus 547 i~~~~-~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQv 625 (1127)
|..+- .+.++ .++|-++|.||-.- ...|+..++.|.. .+ .+-+..=..-+.....+...|+-+
T Consensus 181 iv~ga~k~et~-~avRLaaL~aL~ds------l~fv~~nf~~E~e-------rN--y~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 181 IVMGALKNETT-SAVRLAALKALMDS------LMFVQGNFCYEEE-------RN--YFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred HHHhhcccCch-HHHHHHHHHHHHHH------HHHHHHhhcchhh-------hc--hhheeeehhccCCcHHHHHHHHHH
Confidence 22222 22233 46887888777531 1234433332211 00 111110001123345788889999
Q ss_pred HHHHHhhChhhhhhhHHHHH-HHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHH-hhhcccCcccc
Q 035871 626 LRAVSHNYPNIMSSYWQQVS-TIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLR-AISGFKGTEDL 703 (1127)
Q Consensus 626 L~ala~~yp~l~~~~~~~l~-~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lr-a~~g~~g~~~~ 703 (1127)
|.++.+-|...+++|.+... ...-..++. ..|++...|+..-..+.- -+-|
T Consensus 245 l~kim~LyY~fm~~ymE~aL~alt~~~mks--------------------~nd~va~qavEfWsticeEeid~------- 297 (858)
T COG5215 245 LNKIMMLYYKFMQSYMENALAALTGRFMKS--------------------QNDEVAIQAVEFWSTICEEEIDG------- 297 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------cchHHHHHHHHHHHHHHHHHhhh-------
Confidence 99999999999999988532 222222211 223554444332210000 0000
Q ss_pred ccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHc-----cCC-----hhHHHH
Q 035871 704 LDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQ-----HIS-----SMVRTA 773 (1127)
Q Consensus 704 ~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~-----d~~-----~~VRaa 773 (1127)
.+.+ .+.+.+|. |.+ .|=...+-.+||.+|. +++ =.+-.+
T Consensus 298 ---~~e~-------------------------~~~pe~p~-qn~-~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 298 ---EMED-------------------------KYLPEVPA-QNH-GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred ---HHHH-------------------------hhcccCch-hhc-chHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 0000 00001111 111 1222333445665552 333 246677
Q ss_pred HHHHHhccchhHHhhcchhHHHH-HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCC
Q 035871 774 AVTCFAGITSSVFFSLLKETQEF-IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPL 852 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~q~~-~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~ 852 (1127)
|..||-- |.++-.++... +.. .+..-...++..=|-+|+-|+|.+--=|+-.--.-+|..+++.|+..+.|++
T Consensus 348 A~sCLql-----faq~~gd~i~~pVl~-FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 348 ASSCLQL-----FAQLKGDKIMRPVLG-FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred HHHHHHH-----HHHHhhhHhHHHHHH-HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 7777753 54544433221 222 3445567889999999999999886544443335567888999999999999
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
.-|+.++||++|.|.|.+....+ | ...+.....+.+--..|++++..|-.++.-|+.--+..-. +.
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~-----p-------~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~--~~ 487 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIIS-----P-------CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAV--RE 487 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcC-----c-------cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhh--cc
Confidence 99999999999999998654321 1 0112223333333357999999999999888863332210 01
Q ss_pred CCCCChhHHHHHHHHHHHhhc--cCCccchhhHHHHHHhhh
Q 035871 933 ASLGDSRWLERIVQALVSCVT--TGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~--~~n~KVRWNAc~ALGnl~ 971 (1127)
+..-=..+.+.++++|++.-+ .+....|-.+=.|||-+.
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli 528 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI 528 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 000001246788888888753 455788888999999885
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0076 Score=73.30 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=115.3
Q ss_pred HHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh------cccccccchHHHHHHHHHHH
Q 035871 772 TAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS------CFPQVSQSAEIIDKFIHAVE 845 (1127)
Q Consensus 772 aaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv------~~p~L~~d~~fv~~ai~aLl 845 (1127)
++|.|.|+|+= +++--..+.. ++-..+..++.-||-|++-|||-+. ++|-| ...++-++
T Consensus 376 AAaLDVLanvf-------~~elL~~l~P-lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-------peLip~l~ 440 (885)
T KOG2023|consen 376 AAALDVLANVF-------GDELLPILLP-LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-------PELIPFLL 440 (885)
T ss_pred HHHHHHHHHhh-------HHHHHHHHHH-HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-------HHHHHHHH
Confidence 67788888852 2222233444 5566677899999999999999984 33333 45778888
Q ss_pred HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhcc
Q 035871 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFV 924 (1127)
Q Consensus 846 ~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l 924 (1127)
..+.|+.+.||.-.+|.|+..+.-..... ..+.+..+++..++..-|+. ||.--|+.|..-+-.-+
T Consensus 441 ~~L~DKkplVRsITCWTLsRys~wv~~~~-------------~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 441 SLLDDKKPLVRSITCWTLSRYSKWVVQDS-------------RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHhccCccceeeeeeeeHhhhhhhHhcCC-------------hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998654311 23455666666666555555 79999999998874332
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHhhc---cCCccchhhHHHHHHhh
Q 035871 925 KYTSSSHPASLGDSRWLERIVQALVSCVT---TGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 925 ~~~~~~~~~~~g~~~~~E~~i~aLlk~l~---~~n~KVRWNAc~ALGnl 970 (1127)
..+-. ...+.+.+.|.++.. .+|.++=+-|.-.|..-
T Consensus 508 ~~eLV---------p~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 508 GEELV---------PYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred cchhH---------HHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 22211 147888888888874 68999999988887654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=76.18 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=76.3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchh-HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKE-TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~-~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
|...++++++.+|..|+.||+++.... ...... .+..++.. +...+.|+++.||..|+++|++++..+.-......-
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~-l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 89 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPA-LVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHH-HHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 445678888999999999999987531 000011 11134443 346778999999999999999997544311111111
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
..+++.++..+.+++..||..|.|+|+|||.
T Consensus 90 ~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 90 AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 2367888888999999999999999999973
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0029 Score=79.94 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=140.9
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
..+..+..+|..+.=.+.+++.. ..+.-..+++++. .=+.|.||.||+.|.|+||.+ ....+++..+
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~-----~pelalLaINtl~-KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~ 142 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARL-----QPEKALLAVNTFL-QDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTL 142 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHccc-----ChHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHH
Confidence 55667788888887777765431 1233345667654 556889999999999999987 3456778888
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc-HHHHHHHHHHHHhhccCCc-hhhhhHHHHHhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN-SHLMASLTESALNLTKDGD-KIKSNAVRGLGN 919 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is-~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGn 919 (1127)
.+|.+.+.|+++-||-+||.+++++-..-. + .+. ..++..|.+ +..|.| -|..||+.+|-.
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~p---e----------lv~~~~~~~~L~~----LL~D~dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDM---Q----------LFYQQDFKKDLVE----LLNDNNPVVASNAAAIVCE 205 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---c----------cccccchHHHHHH----HhcCCCccHHHHHHHHHHH
Confidence 999999999999999999999999865210 0 111 122333333 235666 799999999998
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
+...-+ ..-.+....+..|+..+.+-+ -|.-++-|.-+.+-. + .+..-+..+++.+...++ +.
T Consensus 206 I~~~~~----------~~l~l~~~~~~~Ll~~L~e~~---EW~Qi~IL~lL~~y~--P-~~~~e~~~il~~l~~~Lq-~~ 268 (746)
T PTZ00429 206 VNDYGS----------EKIESSNEWVNRLVYHLPECN---EWGQLYILELLAAQR--P-SDKESAETLLTRVLPRMS-HQ 268 (746)
T ss_pred HHHhCc----------hhhHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHHhc-CC
Confidence 842110 111245667777887776544 799998887775421 1 122335667888888885 57
Q ss_pred ChHHHHHHHHHhc
Q 035871 1000 NFKIRIQAAAALA 1012 (1127)
Q Consensus 1000 NFKVRi~AA~AL~ 1012 (1127)
|--|-..|+.++.
T Consensus 269 N~AVVl~Aik~il 281 (746)
T PTZ00429 269 NPAVVMGAIKVVA 281 (746)
T ss_pred CHHHHHHHHHHHH
Confidence 8899999999986
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.2e-05 Score=68.10 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=43.2
Q ss_pred hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 908 KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
.||.+|+.+||++.+..+.. .......+++.|+..++|.+.+||++||+|||+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~---------~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPEL---------LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHH---------HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHH---------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 59999999999975322221 1235678899999999999899999999999986
|
... |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.5e-05 Score=87.39 Aligned_cols=235 Identities=22% Similarity=0.225 Sum_probs=140.7
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHH----HHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS----LIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~----Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
++.++-+-.+-.||.-|..+|.+|+-.. +.|..++.. ++..+++..|+.||..++.|+|++..--.-+.-
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~------EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSR------ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhh------hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 4444444456789999999999987543 333333321 344778999999999999999998531111100
Q ss_pred -hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh-----cccccC-----CCCCCcc-----------------
Q 035871 834 -AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRH-----CIDDFA-----FKPSIDS----------------- 885 (1127)
Q Consensus 834 -~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~-----~~~~~~-----~~~~~~~----------------- 885 (1127)
..-=-+.+++|...++|++..|+..|+-||+||..--.- .....+ ++.++..
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 000025788999999999999999999999999862100 000000 0000000
Q ss_pred ---ccc-HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh
Q 035871 886 ---NAN-SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961 (1127)
Q Consensus 886 ---~is-~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW 961 (1127)
.+- ...+..|+. +-.++|++.++.+|+..|-||.. ..++.. .+..| ..+|+.|+..+.|+.+.||-
T Consensus 325 Ne~lI~dagfl~pLVr--lL~~~dnEeiqchAvstLrnLAa--sse~n~-~~i~e-----sgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVR--LLRAGDNEEIQCHAVSTLRNLAA--SSEHNV-SVIRE-----SGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred cccceecccchhHHHH--HHhcCCchhhhhhHHHHHHHHhh--hhhhhh-HHHhh-----cCchHHHHHHHhcCChhHHH
Confidence 000 011111221 11257999999999999999962 122210 00001 24788888888999877765
Q ss_pred --hHHHHHHhhhcccccc--ccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 962 --NVCRALSNLFLNETIN--LEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 962 --NAc~ALGnl~~n~~i~--~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.||.|. +-.|+... +.+. -+.+.|+-.. .+.+-.||-|||.||+.-.
T Consensus 395 eisac~a~--Lal~d~~k~~lld~----gi~~iLIp~t-~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 395 EISACIAQ--LALNDNDKEALLDS----GIIPILIPWT-GSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHHHHH--HHhccccHHHHhhc----CCcceeeccc-CccchhhcccHHHHHHhhh
Confidence 555554 44443322 1111 1455666666 5688899999999998543
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.8e-05 Score=85.72 Aligned_cols=211 Identities=22% Similarity=0.246 Sum_probs=129.4
Q ss_pred HHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-------ccccccchHHHHHHHHH
Q 035871 771 RTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-------FPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 771 RaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-------~p~L~~d~~fv~~ai~a 843 (1127)
..+|.=+++.|+....-+.+++.-+-+ +.++...++-+.-+|+.++|++.. .-++.. .+.
T Consensus 64 qrsaalafAeitek~vr~Vsres~epv-----l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G--------l~~ 130 (550)
T KOG4224|consen 64 QRSAALAFAEITEKGVRRVSRESNEPV-----LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG--------LDL 130 (550)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhHH-----HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC--------hHH
Confidence 344444677766554444444333332 345677889999999999998742 111211 234
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH-HHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS-HLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~-~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
|+..+.-+...||.+|.=-+-|+... -.+.. .+.. ..| +-.+++.+-+| .|++||.-||-||-
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~----------kiA~sGaL----~pltrLakskdirvqrnatgaLlnmT 195 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATF-DSNKV----------KIARSGAL----EPLTRLAKSKDIRVQRNATGALLNMT 195 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhcc-ccchh----------hhhhccch----hhhHhhcccchhhHHHHHHHHHHHhh
Confidence 55555666778998876333333321 00000 0000 012 22334456555 89999999999883
Q ss_pred hccccCCCCCCCCCCChh--HHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 922 RFVKYTSSSHPASLGDSR--WLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~--~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
|+- +++. .--..++.|++.+..+|..||.-+|+|+||+.-.+.-.-.-..--+.++++|..+. ++.
T Consensus 196 ------hs~-----EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lm-d~~ 263 (550)
T KOG4224|consen 196 ------HSR-----ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLM-DDG 263 (550)
T ss_pred ------hhh-----hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHH-hCC
Confidence 211 1111 11235778999999999999999999999997443221000112356999999999 668
Q ss_pred ChHHHHHHHHHhcCCCcccccC
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYG 1021 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG 1021 (1127)
.-||+.+|+.||+...+-..|-
T Consensus 264 s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 264 SDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ChHHHHHHHHHHhhhcccchhh
Confidence 8899999999999877655554
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.6e-05 Score=72.17 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=71.0
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcc-cccccchHHHH-HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCF-PQVSQSAEIID-KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv~-~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
...++|.++.+|..|+++||+++.. |.... .+++ .+++.++..+.|++..||..|+|+|+||+..-......
T Consensus 13 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~---- 86 (120)
T cd00020 13 VSLLSSSDENVQREAAWALSNLSAGNNDNIQ--AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI---- 86 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH----
Confidence 3567888899999999999999754 33222 2233 67788888999999999999999999998642111000
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHHHhhhh
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLS 921 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl 921 (1127)
......+..++ +..++. .++|..|..+|+||.
T Consensus 87 -----~~~~g~l~~l~----~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 -----VLEAGGVPKLV----NLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----HHHCCChHHHH----HHHhcCCHHHHHHHHHHHHHhh
Confidence 00011233333 334544 489999999999984
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.05 Score=71.49 Aligned_cols=492 Identities=15% Similarity=0.204 Sum_probs=259.3
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.=|.+|..=+.+|++.-.-.+-.|.++++|---. -=.||++|||.+-.+.=-+|...+|. -+.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyR-------------Y~yDP~~~Vq~aM~sIW~~Li~D~k~---~vd~ 1035 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYR-------------YQYDPDKKVQDAMTSIWNALITDSKK---VVDE 1035 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhh-------------hccCCcHHHHHHHHHHHHHhccChHH---HHHH
Confidence 4577888888888887766788899999986631 23699999999888777777777654 2333
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
| +.|+-+-|+-.|-. +.=++....+=+|+-|++.-|++.+. +-+|++|.++...--
T Consensus 1036 y-------------------~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~-e~lpelw~~~fRvmD--- 1091 (1702)
T KOG0915|consen 1036 Y-------------------LNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVK-EKLPELWEAAFRVMD--- 1091 (1702)
T ss_pred H-------------------HHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHHHHHHH---
Confidence 3 33444444433322 33346677777888899999998874 556789988654221
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcc-hhHHHHHhhh--hcCC--CCchHhHHHHHH
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRS-GVLFTLLQCS--ERLA--SPAICFESLQAL 626 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s-~~L~~Ll~~~--~~~~--~~~vRlEAlQvL 626 (1127)
|.++ .+|.||=.....+-+ +...-+ .+..+... ..+..++.+. ++.+ -..||-=|+.++
T Consensus 1092 -DIKE--sVR~aa~~~~~~lsK----------l~vr~~---d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1092 -DIKE--SVREAADKAARALSK----------LCVRIC---DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred -HHHH--HHHHHHHHHHHHHHH----------HHhhhc---ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHH
Confidence 2333 256555432222111 100000 00111111 1344444432 1212 136899999999
Q ss_pred HHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccc
Q 035871 627 RAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDD 706 (1127)
Q Consensus 627 ~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~ 706 (1127)
..++++++..+.+|...+.-.+.+.+...++.. .++-..|........+|. +|+. +.++.
T Consensus 1156 ~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v------------LnYls~r~~~~e~ealDt-~R~s-~akss------ 1215 (1702)
T KOG0915|consen 1156 MDLAKSSGKELKPHFPKLIPLLLNAYSELEPQV------------LNYLSLRLINIETEALDT-LRAS-AAKSS------ 1215 (1702)
T ss_pred HHHHHhchhhhcchhhHHHHHHHHHccccchHH------------HHHHHHhhhhhHHHHHHH-HHHh-hhcCC------
Confidence 999999999999999987766666643322211 011111111122333443 3432 11211
Q ss_pred cccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccC------------ChhHHHHH
Q 035871 707 KLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHI------------SSMVRTAA 774 (1127)
Q Consensus 707 ~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~------------~~~VRaaA 774 (1127)
.+++ .+.+|+..+ + ..++|.++|+.++-. ...|---+
T Consensus 1216 pmme--Ti~~ci~~i-------------------------D----~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1216 PMME--TINKCINYI-------------------------D----ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred cHHH--HHHHHHHhh-------------------------h----HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 1111 122333221 1 356777888877632 12233333
Q ss_pred HHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcc
Q 035871 775 VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS 854 (1127)
Q Consensus 775 c~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~ 854 (1127)
.++...|++-+ ...+..+ +...+|.|++||-+=+-|.|.+..|.+..+--..++.++..++.-.+++. .
T Consensus 1265 ~r~~~emtP~s---------gKll~al-~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-s 1333 (1702)
T KOG0915|consen 1265 QRLGSEMTPYS---------GKLLRAL-FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-S 1333 (1702)
T ss_pred HHhccccCcch---------hHHHHHH-hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-c
Confidence 44444444432 3344433 35579999999999999999999888776554445555555543333333 5
Q ss_pred hhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCC
Q 035871 855 VRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPAS 934 (1127)
Q Consensus 855 VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~ 934 (1127)
++.+-.-=++|-.-.+..+.. + . +..++-- +..+.+ ++.-++
T Consensus 1334 iscatis~Ian~s~e~Lkn~a--------s-----a-ILPLiFL---a~~ee~-------Ka~q~L-------------- 1375 (1702)
T KOG0915|consen 1334 ISCATISNIANYSQEMLKNYA--------S-----A-ILPLIFL---AMHEEE-------KANQEL-------------- 1375 (1702)
T ss_pred hhHHHHHHHHHhhHHHHHhhH--------H-----H-HHHHHHH---HHhHHH-------HHHHHH--------------
Confidence 554444323333322222111 1 1 1111110 112211 111111
Q ss_pred CCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 935 LGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 935 ~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
-+.+-..+.. |...|| ++ -..+.+.+|..+.++.-||+|.+||.++..
T Consensus 1376 ----------w~dvW~e~vsggagtvr---------l~------------~~eiLn~iceni~nn~~w~lr~q~Akai~~ 1424 (1702)
T KOG0915|consen 1376 ----------WNDVWAELVSGGAGTVR---------LY------------LLEILNLICENITNNESWKLRKQAAKAIRV 1424 (1702)
T ss_pred ----------HHHHHHHhCCCCcchhh---------hh------------HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 0111111112 222222 11 234777888888888889999999999986
Q ss_pred CCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 035871 1014 PSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKVLCSSLGE 1076 (1127)
Q Consensus 1014 p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~~~~~~~~~ 1076 (1127)
...+..---.++.+.+-...-++.+.+ -. |-=+.-+.+.++..++..+..+..+|..
T Consensus 1425 ~a~~~sss~~~p~ilkl~~~ll~~L~G---Ri---wdGKe~iLKAl~~~~~a~~~~v~~~~~s 1481 (1702)
T KOG0915|consen 1425 IAEGLSSSAPIPVILKLALSLLDTLNG---RI---WDGKEEILKALASAFEAGLADVKRNMSS 1481 (1702)
T ss_pred HcccccccCChHHHHHHHHHHHHHhhc---cc---cccHHHHHHHHHHHHHHhHHHHHHhchH
Confidence 543332222344555544444554432 11 2223445566777777666666666663
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0033 Score=69.68 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=139.0
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
.+.|.+....--+.=|||+++.+. .+ ..++. ++ . ..+..|.||-.|+.|||.+. .| ...
T Consensus 44 a~~d~s~llkhe~ay~LgQ~~~~~--Av-----~~l~~-vl-~-desq~pmvRhEAaealga~~-~~----------~~~ 102 (289)
T KOG0567|consen 44 AFIDDSALLKHELAYVLGQMQDED--AV-----PVLVE-VL-L-DESQEPMVRHEAAEALGAIG-DP----------ESL 102 (289)
T ss_pred hcccchhhhccchhhhhhhhccch--hh-----HHHHH-Hh-c-ccccchHHHHHHHHHHHhhc-ch----------hhH
Confidence 344444455556667888887643 11 22222 11 1 24578999999999999984 22 333
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcc--cccCCCCCCccccc--HHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCI--DDFAFKPSIDSNAN--SHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~--~~~~~~~~~~~~is--~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
+.+-+..+||...||-.---|+..+...-.... ...++.. ++...+ ..-+..|-+..+..+ ...-=|.-|..+|
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S-vdPa~p~~~ssv~~lr~~lld~t-~~l~~Ry~amF~L 180 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS-VDPAPPANLSSVHELRAELLDET-KPLFERYRAMFYL 180 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc-CCCCCccccccHHHHHHHHHhcc-hhHHHHHhhhhHh
Confidence 444444589999999998889988876422111 1111111 121111 111333333322222 2234566778888
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
.|++ -|.+|.+|++.+.+++.=.|--++|-+|++-.. ..++.|.+.|.+
T Consensus 181 Rn~g-------------------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~------------~ai~~L~k~L~d 229 (289)
T KOG0567|consen 181 RNIG-------------------TEEAINALIDGLADDSALFRHEVAFVFGQLQSP------------AAIPSLIKVLLD 229 (289)
T ss_pred hccC-------------------cHHHHHHHHHhcccchHHHHHHHHHHHhhccch------------hhhHHHHHHHHh
Confidence 8874 388999999999999999999999999998854 467788888776
Q ss_pred C-CChHHHHHHHHHhcCCCccc-------ccCCchHHHHHHHHHHHHHh
Q 035871 998 S-SNFKIRIQAAAALAVPSSVS-------DYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 998 ~-~NFKVRi~AA~AL~~p~~R~-------~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
. .|--||.-||.|||.++.-. ..|..-+.|-.+..-||+-+
T Consensus 230 ~~E~pMVRhEaAeALGaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIADEDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4 46779999999999665311 12333444555566666544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=63.76 Aligned_cols=226 Identities=18% Similarity=0.144 Sum_probs=135.0
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHH-HHHHHHHHhhhccCCCHhHHHHHHHHH-------hhhhccccccc
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQ-EFIISSLIDSALHDDVASVRSAACRAI-------GVISCFPQVSQ 832 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q-~~~i~~Lll~~~~De~~~VRaAA~RAL-------Gvlv~~p~L~~ 832 (1127)
-.|.+.++.||--|++-.|.|..-. ..=.+++- .+|= .++..-+..+.|-|=..-..|| |+--++|-+
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lG-vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi-- 881 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLG-VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI-- 881 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhh-HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh--
Confidence 3568888999998888777653211 11001100 0110 0122223344554444333333 222255555
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKS 911 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRs 911 (1127)
.+.++.|.--|.+....|..+-.=-+|.|||.-. |-++..-+-+++-.++.+.+.+.| +|.
T Consensus 882 -----~dllPrltPILknrheKVqen~IdLvg~Iadrgp-------------E~v~aREWMRIcfeLlelLkahkK~iRR 943 (1172)
T KOG0213|consen 882 -----KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-------------EYVSAREWMRICFELLELLKAHKKEIRR 943 (1172)
T ss_pred -----hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-------------ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888899999999989999998511 234544455565556666676665 999
Q ss_pred hHHHHHhhhhhccccCCCC----CCC--------CC---CChhH-----HHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 912 NAVRGLGNLSRFVKYTSSS----HPA--------SL---GDSRW-----LERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~----~~~--------~~---g~~~~-----~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
+|+-.+|.|.+.+-+...- |-+ .| +=... -=.++++|++--+..++.|+=-.-.||..+|
T Consensus 944 aa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 944 AAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred HHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 9999999999887764410 000 00 00000 1235677777777888999988888988887
Q ss_pred ccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHh
Q 035871 972 LNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAAL 1011 (1127)
Q Consensus 972 ~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL 1011 (1127)
.- +....-++.-.+.|.|-.++.| ...-=|--|+.+.
T Consensus 1024 ey--igemskdYiyav~PlleDAlmD-rD~vhRqta~~~I 1060 (1172)
T KOG0213|consen 1024 EY--IGEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVI 1060 (1172)
T ss_pred HH--HHHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHH
Confidence 42 2222234556677888889965 6676777777654
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=78.33 Aligned_cols=244 Identities=19% Similarity=0.192 Sum_probs=153.8
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAV 844 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aL 844 (1127)
+.+...|-.+......+|... ..++ ..++.+...++ -..+|.++.||.+|+.+|=.+. +-...-..+....
T Consensus 169 ~~s~~~~~~~~~~~~~lg~~~-ss~~-~d~~~~~~~l~-~~~~~~D~~Vrt~A~eglL~L~------eg~kL~~~~Y~~A 239 (823)
T KOG2259|consen 169 ISSTGNRLLLYCFHLPLGVSP-SSLT-HDREHAARGLI-YLEHDQDFRVRTHAVEGLLALS------EGFKLSKACYSRA 239 (823)
T ss_pred cccccchHHHHHHhhhcccCC-Cccc-ccHHHHHHHHH-HHhcCCCcchHHHHHHHHHhhc------ccccccHHHHHHH
Confidence 334566677777777666432 1222 22444444333 5579999999999999865442 1111112344555
Q ss_pred HHhcCCCCcchhchH---HHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 845 EINTHDPLVSVRITA---SWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 845 l~~l~D~~~~VRikA---AWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
.+.+.|....||..| .|-+||.+-. ..+. +..++...+....++|++ ..|.. .||.-|+.+||.+
T Consensus 240 ~~~lsD~~e~VR~aAvqlv~v~gn~~p~---~~e~----e~~e~kl~D~aF~~vC~~----v~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 240 VKHLSDDYEDVRKAAVQLVSVWGNRCPA---PLER----ESEEEKLKDAAFSSVCRA----VRDRSLSVRVEAAKALGEF 308 (823)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhcCCC---cccc----hhhhhhhHHHHHHHHHHH----HhcCceeeeehHHHHhchH
Confidence 667899999999777 6778888731 0010 000124455667777775 57887 7999999999998
Q ss_pred hhcccc--------CCCC----------CC---CCCC----ChhH-----------------HHHHHHHHHHhhccCCcc
Q 035871 921 SRFVKY--------TSSS----------HP---ASLG----DSRW-----------------LERIVQALVSCVTTGNVK 958 (1127)
Q Consensus 921 l~~l~~--------~~~~----------~~---~~~g----~~~~-----------------~E~~i~aLlk~l~~~n~K 958 (1127)
.+.-.. +-.+ +| .+.| ..+| -..+..+++..++|.-+.
T Consensus 309 ~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~E 388 (823)
T KOG2259|consen 309 EQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYE 388 (823)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHH
Confidence 433221 0000 00 0000 0001 123457888889999999
Q ss_pred chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 959 VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 959 VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
||-+|-++++.+-.+. ++.+...+.-|...+ +|..-.||..|..||.-+..+ +.--.+..+.++++|++.
T Consensus 389 VR~AAV~Sl~~La~ss------P~FA~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~---l~i~eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSS------PGFAVRALDFLVDMF-NDEIEVVRLKAIFALTMISVH---LAIREEQLRQILESLEDR 458 (823)
T ss_pred HHHHHHHHHHHHHcCC------CCcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH---heecHHHHHHHHHHHHhc
Confidence 9999999999987663 455788888888888 568889999999999755544 322345666677888763
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=74.87 Aligned_cols=222 Identities=19% Similarity=0.259 Sum_probs=134.5
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHH-----HHHHhhhccCCCH---hHHHHHHHHHhhhh--cccc
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFII-----SSLIDSALHDDVA---SVRSAACRAIGVIS--CFPQ 829 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i-----~~Lll~~~~De~~---~VRaAA~RALGvlv--~~p~ 829 (1127)
.++|.+++-.||.-++=|||||-.+. ..-|++++ ..+ ++++....+ .+| -|-|+|.+++ .-|.
T Consensus 163 iqlL~s~~~~V~eQavWALGNiAGDS-----~~~RD~vL~~galepl-L~ll~ss~~~ismlR-n~TWtLSNlcRGknP~ 235 (526)
T COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDS-----EGCRDYVLQCGALEPL-LGLLLSSAIHISMLR-NATWTLSNLCRGKNPP 235 (526)
T ss_pred HHHHcCchHHHHHHHHHHhccccCCc-----hhHHHHHHhcCchHHH-HHHHHhccchHHHHH-HhHHHHHHhhCCCCCC
Confidence 35677888899999999999996554 22344443 333 355554333 345 4568999986 1111
Q ss_pred cccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchh
Q 035871 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKI 909 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKV 909 (1127)
= |-.-+..+++.|-+.+--.+..|-..|.||++-|.|.--..... .++ ..+++. |+|.. +...-+|
T Consensus 236 P--~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~a-vld----~g~~~R----LvElL---s~~sa~i 301 (526)
T COG5064 236 P--DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQA-VLD----VGIPGR----LVELL---SHESAKI 301 (526)
T ss_pred C--chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHH-HHh----cCCcHH----HHHHh---cCccccc
Confidence 1 22235667777766665556678888999999999852221110 001 134444 43321 4555589
Q ss_pred hhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc--ccccccCCCchhHH
Q 035871 910 KSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN--ETINLEDMDWAPSV 987 (1127)
Q Consensus 910 RsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n--~~i~~~~~~wa~~v 987 (1127)
..-|.|+.||+..--+..... -..+| ++.++...|.+.--.+|=-||+-++|+-.- +-+.. --...+
T Consensus 302 qtPalR~vGNIVTG~D~QTqv-iI~~G-------~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqa---vid~nl 370 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQV-IINCG-------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQA---VIDANL 370 (526)
T ss_pred cCHHHHhhcCeeecCccceeh-heecc-------cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHH---HHhccc
Confidence 999999999996333222100 00122 344555556555457999999999998422 11110 001235
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 988 FSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 988 ~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
+|.|+.++. .-.||+|-.|++|...-
T Consensus 371 iPpLi~lls-~ae~k~kKEACWAisNa 396 (526)
T COG5064 371 IPPLIHLLS-SAEYKIKKEACWAISNA 396 (526)
T ss_pred chHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 688999995 57899999999999743
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=72.07 Aligned_cols=162 Identities=22% Similarity=0.181 Sum_probs=109.4
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i 887 (1127)
.++|.++..|.-++|+...||.-++ ...--..++-+...+.||++.||.+|-|||.|+....- +. ..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~-~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n~-----------~~ 90 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQD-IIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-NQ-----------EQ 90 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHH-HHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-hH-----------HH
Confidence 4789999999999999988885432 11112345677778999999999999999999985421 11 11
Q ss_pred cHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHH
Q 035871 888 NSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967 (1127)
Q Consensus 888 s~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~AL 967 (1127)
-...+..+++..+ ...-+..|...|.|+|+||. .++ .....+-+.|..|+..+..|+.++|-++-..|
T Consensus 91 Ik~~i~~Vc~~~~-s~~lns~~Q~agLrlL~nLt--v~~---------~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 91 IKMYIPQVCEETV-SSPLNSEVQLAGLRLLTNLT--VTN---------DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHccC--CCc---------chhhhHHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 1233555555432 12235589999999999994 111 11123456788899999999999999999999
Q ss_pred HhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 968 SNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 968 Gnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
.|+-.|++..- .--..++.+.|+.++.
T Consensus 159 ~nLS~np~~~~--~Ll~~q~~~~~~~Lf~ 185 (254)
T PF04826_consen 159 VNLSENPDMTR--ELLSAQVLSSFLSLFN 185 (254)
T ss_pred HHhccCHHHHH--HHHhccchhHHHHHHc
Confidence 99998875420 0011234555555553
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0031 Score=76.65 Aligned_cols=228 Identities=18% Similarity=0.138 Sum_probs=139.0
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhH---HhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccch
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSV---FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSA 834 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~---f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~ 834 (1127)
.|...|.|+++.||..+|..++++-.+. ...+.. ..++. ++..++.|+|..|..+|+.+|..+..++.-. +.
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~---~~l~~-~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~ 155 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD---NELLP-LIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQ 155 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC---ccHHH-HHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HH
Confidence 5667889999999999999998863221 111111 22343 3457789999999999999999997544321 12
Q ss_pred HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHH--HHHHHHhhccCCc-hhhh
Q 035871 835 EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMAS--LTESALNLTKDGD-KIKS 911 (1127)
Q Consensus 835 ~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~--L~e~aL~a~~D~D-KVRs 911 (1127)
.|-.+....|...+..++..||.+.-+.+.+++..=... .+.+.. +++.+++..+++| -||.
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~---------------~~~~~~sgll~~ll~eL~~dDiLvql 220 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA---------------AEAVVNSGLLDLLLKELDSDDILVQL 220 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH---------------HHHHHhccHHHHHHHHhcCccHHHHH
Confidence 222333566666676778899999999999998531000 011111 3344444456666 6999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhH--HHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHH
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRW--LERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS 989 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~--~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~ 989 (1127)
||+.-|+.|+. .. + | ..+ -..+++.|++.+.+....-|.++-+=.|.+.--..+...++.-....|+
T Consensus 221 nalell~~La~--~~-~-------g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p 289 (503)
T PF10508_consen 221 NALELLSELAE--TP-H-------G-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP 289 (503)
T ss_pred HHHHHHHHHHc--Ch-h-------H-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH
Confidence 99999999974 11 1 1 111 1346777888775432222777777656541111111111111223455
Q ss_pred HHHHHHh---cCCChHHHHHHHHHhcCCCc
Q 035871 990 ILLLLLR---DSSNFKIRIQAAAALAVPSS 1016 (1127)
Q Consensus 990 ~Ll~ll~---~~~NFKVRi~AA~AL~~p~~ 1016 (1127)
..+..|. ++.+-..|..|-.+||..++
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 5554443 56888899999999986663
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.077 Score=64.41 Aligned_cols=244 Identities=18% Similarity=0.245 Sum_probs=154.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcch-----hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-c
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLK-----ETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-C 826 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~-----~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~ 826 (1127)
.+++++| .-+.|+.-..|..++..... +|.+||. ...+..+..++.+.-++.+ ..|.+. |
T Consensus 521 ~v~~kil-~~~~De~ep~r~m~a~~vsr----i~~~lg~~~~dErleerl~d~il~Afqeq~~---------t~~~il~~ 586 (975)
T COG5181 521 RVSRKIL-EYYSDEPEPYRKMNAGLVSR----IFSRLGRLGFDERLEERLYDSILNAFQEQDT---------TVGLILPC 586 (975)
T ss_pred HHHHHHH-hhccCCcchhhhhhhHHHHH----HHHhcccccccHHHHHHHHHHHHHHHHhccc---------cccEEEec
Confidence 4566655 45677765556666555443 2334433 3345566655544433332 234432 4
Q ss_pred ccccccchH-----HHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 827 FPQVSQSAE-----IIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 827 ~p~L~~d~~-----fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
|...-...+ |+.-.+..+++.++.+.++||+.||=-.|-|.-.|..+.+ ...+.++-.....
T Consensus 587 f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-------------~~~l~klg~iLyE 653 (975)
T COG5181 587 FSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-------------TKELAKLGNILYE 653 (975)
T ss_pred ccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-------------HHHHHHHhHHHHH
Confidence 444333322 3566788999999999999999999888888877765543 1224443222222
Q ss_pred hc-cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC
Q 035871 902 LT-KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED 980 (1127)
Q Consensus 902 a~-~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~ 980 (1127)
.. +|.+.|-....-|+-.|-....+... +.+ +..+++.|.--|+++.-||.=|..--+|.+..|..-..+.
T Consensus 654 ~lge~ypEvLgsil~Ai~~I~sv~~~~~m------qpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~ 725 (975)
T COG5181 654 NLGEDYPEVLGSILKAICSIYSVHRFRSM------QPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV 725 (975)
T ss_pred hcCcccHHHHHHHHHHHHHHhhhhccccc------CCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH
Confidence 22 34446766655555555433333322 111 4567778888889999999999999999999887667777
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 981 MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 981 ~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.+|...-|.- +..|+ +-|-.+|.+|...+|-+.. ..|.+ +|...|+.-|+.
T Consensus 726 rEWMRIcfeL-vd~Lk-s~nKeiRR~A~~tfG~Is~--aiGPq--dvL~~LlnnLkv 776 (975)
T COG5181 726 REWMRICFEL-VDSLK-SWNKEIRRNATETFGCISR--AIGPQ--DVLDILLNNLKV 776 (975)
T ss_pred HHHHHHHHHH-HHHHH-HhhHHHHHhhhhhhhhHHh--hcCHH--HHHHHHHhcchH
Confidence 8999988865 55554 3677899999999985542 56654 777777766653
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=69.43 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=76.6
Q ss_pred CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchh
Q 035871 906 GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985 (1127)
Q Consensus 906 ~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~ 985 (1127)
|+.||.|++.+||-|+.- .+...|..++.+.++++|+++-||++|...|..+..++.+ +|.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r-------------~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-------------YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-------------CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehh
Confidence 457999999999999611 1235788999999999999999999999999999988644 5788
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 986 ~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.+|..++.++ .|+|-.||-.|...+....
T Consensus 63 ~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 63 QLFSRILKLL-VDENPEIRSLARSFFSELL 91 (178)
T ss_pred hhhHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 8988888888 4689999999999997544
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.18 E-value=1 Score=54.86 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCch-hhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPST-VFLQVA 470 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~-~llq~A 470 (1127)
+.=+.|.+++.+|++.+ .=++.||-|+-+.-..... +--..+.+.++.++..+.+.-.| -++|+.
T Consensus 109 r~~~~Aaql~aaIA~~E--lp~~~wp~lm~~mv~nvg~------------eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 109 RFCTMAAQLLAAIARME--LPNSLWPGLMEEMVRNVGD------------EQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHHHHHHHHhh--CccccchHHHHHHHHhccc------------cCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 56678899999998852 2367788877553211100 01125778999999999999887 454421
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH-h--Hhc-ccCCCCCCCchHHHHHHHHHH
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMP-L--ISC-TPYSRMPGELMPNLIISLRAR 546 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~-L--Vq~-TPY~RL~~~Ll~~vv~~l~~~ 546 (1127)
- .-+-.....++..|++.++....||||.. | |++ ..|+-=..=++.-|
T Consensus 175 ------------------N---~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv------- 226 (858)
T COG5215 175 ------------------N---VILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV------- 226 (858)
T ss_pred ------------------h---HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee-------
Confidence 0 12333455788999999999999999987 3 443 33321111111111
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHh
Q 035871 547 IEEGFPLKTDQTGLLVAAISCLTAALS 573 (1127)
Q Consensus 547 i~~~~~~~~d~~al~VaaL~cL~avls 573 (1127)
++.. ..+|.. +..++|+||.-++.
T Consensus 227 -ceat-q~~d~e-~q~aafgCl~kim~ 250 (858)
T COG5215 227 -CEAT-QGNDEE-LQHAAFGCLNKIMM 250 (858)
T ss_pred -ehhc-cCCcHH-HHHHHHHHHHHHHH
Confidence 2222 123443 77899999987764
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.044 Score=69.62 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=108.1
Q ss_pred cCCCHh-HHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 807 HDDVAS-VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 807 ~De~~~-VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+..+.. .|.+-.+.++.+. ++.|. ...-..+++.+.-++..+|-=.--.|-|+++.
T Consensus 42 ~s~~~~~kk~alKkvIa~mt----~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~---------------- 98 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANMT----MGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARL---------------- 98 (746)
T ss_pred HCCCHHHHHHHHHHHHHHHH----CCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----------------
Confidence 333444 4455555666664 36664 23334445566666777775555555555321
Q ss_pred cccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHH
Q 035871 886 NANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVC 964 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc 964 (1127)
.+++....+....+-++|.+ .||+.|.|.||+| ..+...|-++..+.+++.+.++.||=+|+
T Consensus 99 --~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I---------------r~~~i~e~l~~~lkk~L~D~~pYVRKtAa 161 (746)
T PTZ00429 99 --QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI---------------RVSSVLEYTLEPLRRAVADPDPYVRKTAA 161 (746)
T ss_pred --ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---------------CcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 12333334555555566654 8999999999999 34457888999999999999999999999
Q ss_pred HHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 965 RALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 965 ~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
.|+.++++...-.....+|.+ .|..+| +++|--|..||..+|..+
T Consensus 162 lai~Kly~~~pelv~~~~~~~----~L~~LL-~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 162 MGLGKLFHDDMQLFYQQDFKK----DLVELL-NDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHHHHhhCcccccccchHH----HHHHHh-cCCCccHHHHHHHHHHHH
Confidence 999999974321112334554 455555 579999999999999744
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.24 Score=61.45 Aligned_cols=246 Identities=13% Similarity=0.183 Sum_probs=147.9
Q ss_pred HHHHhhHHHHHccCChhHHHHHH----HHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC--H---hHHHHHHHHHhh
Q 035871 753 EMIEKHMPLILQHISSMVRTAAV----TCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV--A---SVRSAACRAIGV 823 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc----~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~--~---~VRaAA~RALGv 823 (1127)
++++..+ .-+.|+.+.-|.... +.++++|...| ....-+..+..++.+.-++.. . .+=.+-+.+||.
T Consensus 716 ~~v~R~v-~~lkde~e~yrkm~~etv~ri~~~lg~~di---derleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 716 PIVSRVV-LDLKDEPEQYRKMVAETVSRIVGRLGAADI---DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred HHHHHHh-hhhccccHHHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 4555544 346777765555554 44555665442 334455666666555544422 2 222334444543
Q ss_pred hhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhc
Q 035871 824 ISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT 903 (1127)
Q Consensus 824 lv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~ 903 (1127)
=+ --|+.-.+..++..|+++..+||+.||=-.|.|.-.+..+.++ .++..+--.+....
T Consensus 792 r~--------kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-------------~~m~~lGvvLyEyl 850 (1172)
T KOG0213|consen 792 RV--------KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-------------KLMGHLGVVLYEYL 850 (1172)
T ss_pred cc--------ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-------------HHHHHhhHHHHHhc
Confidence 21 1234566778888999999999999998888887766655321 12222211111112
Q ss_pred -cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCC
Q 035871 904 -KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMD 982 (1127)
Q Consensus 904 -~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~ 982 (1127)
++.+.|-.+..-|+-.|...+...-... .+..+++.|.--|++..-||+=|-.--+|.+..+-.-..+-..
T Consensus 851 geeypEvLgsILgAikaI~nvigm~km~p--------Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE 922 (1172)
T KOG0213|consen 851 GEEYPEVLGSILGAIKAIVNVIGMTKMTP--------PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE 922 (1172)
T ss_pred CcccHHHHHHHHHHHHHHHHhccccccCC--------ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH
Confidence 2333565544444443332221111101 1456777888888889999999988888999988666777788
Q ss_pred chhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 983 WAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 983 wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
|...-|.- +.+|+. -|-.+|.+|...+|-+.. ..|.+ +|...|+.-|+.
T Consensus 923 WMRIcfeL-lelLka-hkK~iRRaa~nTfG~Iak--aIGPq--dVLatLlnnLkv 971 (1172)
T KOG0213|consen 923 WMRICFEL-LELLKA-HKKEIRRAAVNTFGYIAK--AIGPQ--DVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHH-HHHHHH-HHHHHHHHHHhhhhHHHH--hcCHH--HHHHHHHhcchH
Confidence 99988875 455544 456799999999985542 56655 777777666653
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.03 Score=60.36 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-ccc---ccccchHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFP---QVSQSAEI 836 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p---~L~~d~~f 836 (1127)
..+.++...+|.+|..||-.|-..+ +... ..+.. .+..++++.++.||..++..|..++ .++ .--+...+
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~----~~~~-~~~~~-~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESC----SYSP-KILLE-ILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-----H---HHHHH-HHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHC----CcHH-HHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 4456777899999999999875432 2001 11122 3456789999999999999998875 444 11122334
Q ss_pred HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh
Q 035871 837 IDKFIHAVEINTHDPLVSVRITASWALANICDSIRH 872 (1127)
Q Consensus 837 v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~ 872 (1127)
+...++.+...+.|++..||..|--++..+-.....
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 577888888999999999999999888888765443
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.26 Score=60.40 Aligned_cols=283 Identities=17% Similarity=0.217 Sum_probs=159.6
Q ss_pred chHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q 035871 617 AICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISG 696 (1127)
Q Consensus 617 ~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g 696 (1127)
....-++|+|+.++..-|..+..+...+.-++.+.|-+... .+..++++.|......
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~--------------------evr~a~~~~l~~~~sv--- 325 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP--------------------EVRKAGIETLLKFGSV--- 325 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH--------------------HHHHHHHHHHHHHHHh---
Confidence 45567899999999999998888887776666666644332 2334444444432111
Q ss_pred ccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH---ccCChhHHHH
Q 035871 697 FKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL---QHISSMVRTA 773 (1127)
Q Consensus 697 ~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l---~d~~~~VRaa 773 (1127)
.|+ .-|..++|.++ .|+...+
T Consensus 326 ------------idN-----------------------------------------~dI~~~ip~Lld~l~dp~~~~--- 349 (569)
T KOG1242|consen 326 ------------IDN-----------------------------------------PDIQKIIPTLLDALADPSCYT--- 349 (569)
T ss_pred ------------hcc-----------------------------------------HHHHHHHHHHHHHhcCcccch---
Confidence 111 11233444444 4554222
Q ss_pred HHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc-ccccchHHHHHHHHHHHHhcCCCC
Q 035871 774 AVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP-QVSQSAEIIDKFIHAVEINTHDPL 852 (1127)
Q Consensus 774 Ac~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p-~L~~d~~fv~~ai~aLl~~l~D~~ 852 (1127)
-.|+-.+|...|...=..--.-++-.++-..+++.+...+-.++-..|+++..- .=..=..|+...++.+-.++.|+.
T Consensus 350 -~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~ 428 (569)
T KOG1242|consen 350 -PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAV 428 (569)
T ss_pred -HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCC
Confidence 234445555555544322222233346667789999999999999999996311 111124456666677778899999
Q ss_pred cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCC
Q 035871 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 853 ~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
+.||.-|+.|||-+-..+.... ++ ..+..+.+... ..-.++-|.-++-.|+.+++-+..+
T Consensus 429 PEvR~vaarAL~~l~e~~g~~~----f~---------d~~p~l~e~~~--~~k~~~~~~g~aq~l~evl~~~~v~----- 488 (569)
T KOG1242|consen 429 PEVRAVAARALGALLERLGEVS----FD---------DLIPELSETLT--SEKSLVDRSGAAQDLSEVLAGLGVE----- 488 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc----cc---------ccccHHHHhhc--cchhhhhhHHHhhhHHHHHhcccch-----
Confidence 9999999999998887765422 11 12222333211 1122356666677777775333322
Q ss_pred CCCCChhHHHHHHHHHHHhhccCCcc--chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHH
Q 035871 933 ASLGDSRWLERIVQALVSCVTTGNVK--VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAA 1009 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~~~n~K--VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~ 1009 (1127)
..++++..++........+ +|=+-.+=++-+- ..+.....+....+++..++.+. +.+-++|..|-.
T Consensus 489 -------~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp--~~~~~~~~~yi~~i~~~~~k~~a-d~de~~~~~~~~ 557 (569)
T KOG1242|consen 489 -------KVEDILPEILANASSVLIDERIRDGVIWLFYLLP--YIFGFQFQPYIHEILDEFLKGLA-DNDEKGRDTALE 557 (569)
T ss_pred -------HHHHHHHHHHHHHhhccchhhhccCeeehhhccc--hhhhHHhHHHHHHHHHHHHHHhh-hcCCccccchhh
Confidence 2456666666555433322 3332222221111 11112234677888888888886 566677766543
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=63.42 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 940 WLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 940 ~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
..+.+++-+++|++|.+.+|||.||.||.|+.+.-.-. -.+.-..+|+.|++++. |.+-.||..|.
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~-D~d~~Vr~~a~ 89 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSA-DPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHc-CCchhHHHHHH
Confidence 57889999999999999999999999999997541100 01234789999999995 57778998774
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=72.67 Aligned_cols=184 Identities=20% Similarity=0.225 Sum_probs=124.7
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhc--cchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAG--ITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~--Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~ 829 (1127)
.+-.+..+-.++.|.+|.+|..+.=.++. .|... ..+|..|+.-+..|.|-+||-||+-|||-+.
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl---- 583 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVL---- 583 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeE----
Confidence 34456677778889999999998655543 33211 3355667767789999999999999999763
Q ss_pred cccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC-ch
Q 035871 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DK 908 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DK 908 (1127)
..|+ +.+...+....+.-|+-||.-||-|||=-|.--.. .+ -..|+|.++ +|. |-
T Consensus 584 -~~dp---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----------------~e-Ai~lLepl~---~D~~~f 639 (929)
T KOG2062|consen 584 -FRDP---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----------------KE-AINLLEPLT---SDPVDF 639 (929)
T ss_pred -ecCh---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----------------HH-HHHHHhhhh---cChHHH
Confidence 3555 33334444445778899999999999988853110 01 223444433 444 46
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhh---hccccccccCC
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNL---FLNETINLEDM 981 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl---~~n~~i~~~~~ 981 (1127)
||..|.-|++.|+ ++..+-..|. ...+.+.|.+.+.+ .+.=++.-||.|=|-+ ++|-+|.+..+
T Consensus 640 VRQgAlIa~amIm--~Q~t~~~~pk-------v~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~ 708 (929)
T KOG2062|consen 640 VRQGALIALAMIM--IQQTEQLCPK-------VNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSM 708 (929)
T ss_pred HHHHHHHHHHHHH--HhcccccCch-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEecc
Confidence 9999999999996 3332222221 34566777777765 4577899999998876 78988887654
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0071 Score=72.32 Aligned_cols=190 Identities=20% Similarity=0.248 Sum_probs=127.1
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP 828 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p 828 (1127)
.+-.++.++.+..++.|.++.+|..+.=+++. .|.--. ...++..|+.-+..|.|.+||-||+=|||-++|
T Consensus 511 ygrqe~add~I~ell~d~ds~lRy~G~fs~al----Ay~GTg---n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~-- 581 (926)
T COG5116 511 YGRQEMADDYINELLYDKDSILRYNGVFSLAL----AYVGTG---NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC-- 581 (926)
T ss_pred hhhHHHHHHHHHHHhcCchHHhhhccHHHHHH----HHhcCC---cchhHhhhheeecccCchHHHHHHHHheeeeEe--
Confidence 45568888899999999999999988766554 111111 133566677677899999999999999997753
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch
Q 035871 829 QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK 908 (1127)
Q Consensus 829 ~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK 908 (1127)
+|. ...+..+...-+.-|.-||.-.|.|||=.|.--.. ..--++|..|.+ +.+|-
T Consensus 582 ---~D~---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------------~~a~diL~~L~~------D~~df 636 (926)
T COG5116 582 ---DDR---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------------KVATDILEALMY------DTNDF 636 (926)
T ss_pred ---cCc---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------------HHHHHHHHHHhh------CcHHH
Confidence 444 22333343445677889999999999988853111 122234555532 45568
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhh---hccccccccCC
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNL---FLNETINLEDM 981 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl---~~n~~i~~~~~ 981 (1127)
||..|+-|+|.|+--..++- +| -..+++..+.+.+.+ .+.-++.-||.|=|-+ ++|-+|.+..+
T Consensus 637 VRQ~AmIa~~mIl~Q~n~~L--np-------~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~na 705 (926)
T COG5116 637 VRQSAMIAVGMILMQCNPEL--NP-------NVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNA 705 (926)
T ss_pred HHHHHHHHHHHHHhhcCccc--Ch-------hHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEecc
Confidence 99999999999973332221 12 145666667666654 3456778899887765 68877776544
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.11 Score=63.29 Aligned_cols=235 Identities=17% Similarity=0.209 Sum_probs=128.7
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc---chH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ---SAE 835 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~---d~~ 835 (1127)
|-..+..++..+|.-+.+++.+|.+..-+.+..-....+++ .++..++++|..||..|+..|+.++..+.-.+ ...
T Consensus 165 L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~-~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 165 LKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD-LLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH-HHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 33455666788999999999988654422222211112444 34577788999999999999999976333211 122
Q ss_pred HHHHHHHHHHHhcCCC-CcchhchHH-HHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhh
Q 035871 836 IIDKFIHAVEINTHDP-LVSVRITAS-WALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSN 912 (1127)
Q Consensus 836 fv~~ai~aLl~~l~D~-~~~VRikAA-WALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsn 912 (1127)
.+...++-+....+|| ...+.+... -..||+... .... .- ..-+..+..+ .......| ..+..
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~--~~~~-------v~-~~~p~~~~~l----~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV--SPQE-------VL-ELYPAFLERL----FSMLESQDPTIREV 309 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc--ChHH-------HH-HHHHHHHHHH----HHHhCCCChhHHHH
Confidence 2333344444445566 333343333 345555532 0000 00 0112333333 33345555 69999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC-C-CchhHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED-M-DWAPSVFSI 990 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~-~-~wa~~v~~~ 990 (1127)
|+.++|.|+.-..-...- ....+.-.+.++...-.....+...+|-.+-+||++++....-...+ . .-....|..
T Consensus 310 A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred HHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 999999997333221110 00111224556666666667788889999999999998765431000 0 112233332
Q ss_pred ---------HHHHHhcCCChHHHHHHHHHhc
Q 035871 991 ---------LLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 991 ---------Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+..++ ..+=..+|+.|=.-|.
T Consensus 387 ~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~ 416 (503)
T PF10508_consen 387 LSGSPLSNLLMSLL-KQPFPELRCAAYRLLQ 416 (503)
T ss_pred hcCCchHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 33333 4455678877766664
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.6 Score=57.66 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=102.2
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cc
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CF 827 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~ 827 (1127)
++-....+.++.....+.+..+++|||-|+-+..-.+..-=..-++..++..++ .++.|.+..|..++.-||-++| -|
T Consensus 372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv-qll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV-QLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH-HHhhCcchhHHHHHHHHHHHHHhhc
Confidence 344444455666666678899999999999885433321111123445555443 7789999999999999999988 56
Q ss_pred cccccchHHH-HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc-ccCCCCCCcccccHHHHHHHHHHHHhhccC
Q 035871 828 PQVSQSAEII-DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID-DFAFKPSIDSNANSHLMASLTESALNLTKD 905 (1127)
Q Consensus 828 p~L~~d~~fv-~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~-~~~~~~~~~~~is~~lL~~L~e~aL~a~~D 905 (1127)
..+++ .|+ ...|+.++..+.|+..++|.++-|+|-++.= +.+ ...+.. ...+..+.|.- ..+|
T Consensus 451 s~~ks--kfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f----~~de~~k~~~--~~ki~a~~i~~-------l~nd 515 (678)
T KOG1293|consen 451 SNLKS--KFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF----NCDEEEKFQL--LAKIPANLILD-------LIND 515 (678)
T ss_pred ccHHH--HHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh----cchHHHHHHH--HHHhhHHHHHH-------HHhC
Confidence 66654 232 4567889999999999999999999988752 111 000000 01233333322 3578
Q ss_pred Cc-hhhhhHHHHHhhhh
Q 035871 906 GD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 906 ~D-KVRsnAvRALGnLl 921 (1127)
.| .|...+.--|.|+.
T Consensus 516 ~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 516 PDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 88 79988887777774
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.014 Score=66.56 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCC--cchhchHHHHHHhhhhhhhhcccccC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPL--VSVRITASWALANICDSIRHCIDDFA 878 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~--~~VRikAAWALGNL~d~L~~~~~~~~ 878 (1127)
++..++.+.+..||--|+||||++.--..-+.|-..--.+.+.++..+.... .+.--+|.|.|+|+|.. .+.
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG--knP---- 234 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG--KNP---- 234 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC--CCC----
Confidence 4447778899999999999999996322222221111123355555444333 35556899999999964 111
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHH-----HHHHHHhh
Q 035871 879 FKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERI-----VQALVSCV 952 (1127)
Q Consensus 879 ~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~-----i~aLlk~l 952 (1127)
.| ++ +.+..-+...-++..-.| .|-.-|+-|+.+|. .|.-+-++.+ ...|+..|
T Consensus 235 -~P--~w----~~isqalpiL~KLiys~D~evlvDA~WAiSYls-------------Dg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 235 -PP--DW----SNISQALPILAKLIYSRDPEVLVDACWAISYLS-------------DGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred -CC--ch----HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc-------------cCcHHHHHHHHhcCCcHHHHHHh
Confidence 11 11 112222222223333333 68889999999984 1211112222 23488888
Q ss_pred ccCCccchhhHHHHHHhhhcccccccc---CCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 953 TTGNVKVQWNVCRALSNLFLNETINLE---DMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 953 ~~~n~KVRWNAc~ALGnl~~n~~i~~~---~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
.+.+.||+-=|-.+.||+..-.+.... .++ +.+++..+|.+-+ -.+|-.|++.++.+.
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G----~L~a~~~lLs~~k-e~irKEaCWTiSNIT 355 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQVIINCG----ALKAFRSLLSSPK-ENIRKEACWTISNIT 355 (526)
T ss_pred cCccccccCHHHHhhcCeeecCccceehheecc----cHHHHHHHhcChh-hhhhhhhheeecccc
Confidence 999999999999999999755443321 111 3356666675544 479999999998664
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.026 Score=60.86 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=113.3
Q ss_pred ccCCCHhHHHHHHHHHhhhhcccc-cccchHH---HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 806 LHDDVASVRSAACRAIGVISCFPQ-VSQSAEI---IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~~p~-L~~d~~f---v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..+.|+..|-.|...|-.++.... ...-..| +..++..+...+.|....|-..|.-.++.+...+....+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~------ 89 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE------ 89 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH------
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH------
Confidence 477899999999999987775551 1111223 233446777889999999999999999999988765431
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHH-HHHHHHhhccCCccc
Q 035871 882 SIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERI-VQALVSCVTTGNVKV 959 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~-i~aLlk~l~~~n~KV 959 (1127)
+ .+..++...++.+.|+. -||..|..+|-.+.+.... ..++ +..+....+++|++|
T Consensus 90 -------~-~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--------------~~~~~~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 90 -------P-YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--------------SPKILLEILSQGLKSKNPQV 147 (228)
T ss_dssp -------H-HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHH
T ss_pred -------H-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--------------HHHHHHHHHHHHHhCCCHHH
Confidence 1 24444555555667765 4999999999999743331 1234 566667778999999
Q ss_pred hhhHHHHHHhhhcccc---ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 960 QWNVCRALSNLFLNET---INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~---i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
|--++..|..++..-. -.+....+.+.+.+.+...+ .|.|-.||-.|-.++.
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLW 202 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHH
Confidence 9999999999886533 11222234577899999999 5699999999999997
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.052 Score=67.28 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHH-HHHHHHhhhhcccccccchHHHHHHHHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRS-AACRAIGVISCFPQVSQSAEIIDKFIHAVE 845 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRa-AA~RALGvlv~~p~L~~d~~fv~~ai~aLl 845 (1127)
....|..-.|||+..|...-. .++.. +| .+++-+...+ .....|+..+-.|+. ..++.+.
T Consensus 377 ~~~~r~~~lDal~~aGT~~av-------~~i~~-~I---~~~~~~~~ea~~~l~~l~~~~~~Pt~--------e~l~~l~ 437 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAV-------KFIKD-LI---KSKKLTDDEAAQLLASLPFHVRRPTE--------ELLKELF 437 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHH-------HHHHH-HH---HTT-S-HHHHHHHHHHHHHT-----H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHH-------HHHHH-HH---HcCCCCHHHHHHHHHHHHhhcCCCCH--------HHHHHHH
Confidence 467899999999999876511 12222 22 2233333332 223333333333332 3444444
Q ss_pred HhcC----CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 846 INTH----DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 846 ~~l~----D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
..+. ..+..+|..|.-++|.+-...........+.+.....+....+..+.+.+-.+...+| ..+--+.+||||+
T Consensus 438 ~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~ 517 (618)
T PF01347_consen 438 ELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL 517 (618)
T ss_dssp HHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc
Confidence 4333 2456788889999999988655442000000000011222223333332223334444 6788899999999
Q ss_pred hhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC---CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 921 SRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG---NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 921 l~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~---n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
+ ...+++.|...+.+. +.-+|.-|.+||.++-.. +...+.+.|+....+
T Consensus 518 g-------------------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~---------~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 518 G-------------------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH---------CPEKVREILLPIFMN 569 (618)
T ss_dssp T--------------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT----------HHHHHHHHHHHHH-
T ss_pred C-------------------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc---------CcHHHHHHHHHHhcC
Confidence 5 234677888888665 688999999999877322 346789999999987
Q ss_pred -CCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 035871 998 -SSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFK 1068 (1127)
Q Consensus 998 -~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~ 1068 (1127)
..+..|||.|...|..- +-...+|..+...|.. +. -.|+++|....|+
T Consensus 570 ~~e~~EvRiaA~~~lm~~-------~P~~~~l~~i~~~l~~---E~-------------~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 570 TTEDPEVRIAAYLILMRC-------NPSPSVLQRIAQSLWN---EP-------------SNQVASFVYSHLK 618 (618)
T ss_dssp TTS-HHHHHHHHHHHHHT----------HHHHHHHHHHHTT----S--------------HHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHhc-------CCCHHHHHHHHHHHhh---Cc-------------hHHHHHHHHHhcC
Confidence 55688999999999621 1234678777777754 11 3567777766554
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.38 Score=61.96 Aligned_cols=311 Identities=23% Similarity=0.249 Sum_probs=185.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccC-CCHhHHHHHHHHHhhhh----cc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHD-DVASVRSAACRAIGVIS----CF 827 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~D-e~~~VRaAA~RALGvlv----~~ 827 (1127)
.+++ +|-..+.|.+..||.+||.-+|.|++ +||.+.-+.+|..++ ....- +++.+---||-|||.+. +.
T Consensus 341 ~vie-~Lls~l~d~dt~VrWSaAKg~grvt~----rlp~~Lad~vi~svi-d~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 341 FVIE-HLLSALSDTDTVVRWSAAKGLGRVTS----RLPPELADQVIGSVI-DLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHH-HHHHhccCCcchhhHHHHHHHHHHHc----cCcHHHHHHHHHHHH-HhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 3444 55578889999999999999999864 688877787777655 33332 56778889999999996 33
Q ss_pred cccccchHHHHHHHHHHHHhcC--------CCCcchhchHH---HHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHH
Q 035871 828 PQVSQSAEIIDKFIHAVEINTH--------DPLVSVRITAS---WALANICDSIRHCIDDFAFKPSIDSNANSHLMASLT 896 (1127)
Q Consensus 828 p~L~~d~~fv~~ai~aLl~~l~--------D~~~~VRikAA---WALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~ 896 (1127)
|++ +++.++.|++++. -.-..||-.|+ ||++.--+. ..+.+ .+.+|.
T Consensus 415 ps~------l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~---------------~~l~p-~l~~L~ 472 (1133)
T KOG1943|consen 415 PSL------LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP---------------SDLKP-VLQSLA 472 (1133)
T ss_pred hHH------HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh---------------hhhhH-HHHHHH
Confidence 333 4677888887653 33357887665 565532211 12223 233332
Q ss_pred HH-HHhhccCCc-hhhhhHHHHHh-hhhhccccCCCC------CC--C----C---------CCChhHHHHHHHHHHHh-
Q 035871 897 ES-ALNLTKDGD-KIKSNAVRGLG-NLSRFVKYTSSS------HP--A----S---------LGDSRWLERIVQALVSC- 951 (1127)
Q Consensus 897 e~-aL~a~~D~D-KVRsnAvRALG-nLl~~l~~~~~~------~~--~----~---------~g~~~~~E~~i~aLlk~- 951 (1127)
.+ ...|.-|.+ .+|..|.=|+= +++|.-.+.+-. +. + . .+.+.+.+.+++-|+..
T Consensus 473 s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K 552 (1133)
T KOG1943|consen 473 SALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK 552 (1133)
T ss_pred HHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc
Confidence 22 233457999 79998888874 334444432210 10 0 0 14555678888887755
Q ss_pred hccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC-C-cccccCCc---hHH
Q 035871 952 VTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP-S-SVSDYGKS---FSD 1026 (1127)
Q Consensus 952 l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p-~-~R~~yG~~---~~~ 1026 (1127)
+..=+.|+||-|++||.++-.-+. ...+..+++.|+.-. +.++-.-|+.+..|.|.. + -|..+|-. ..+
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~~p-----k~~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~ 626 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLTEP-----KYLADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDEN 626 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHhhH-----Hhhcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 888899999999999999532210 112345778887777 567778899888888722 2 22222111 122
Q ss_pred HHHHHHHHHHHhccCCCCCCccchhhH--HHHHH-------------H---HHHH-HHHHHHHhhcccccccccccccCC
Q 035871 1027 VVQGLEHILENLGADHLSAPSSFKYRV--ALQKQ-------------K---SSFL-EEWFKVLCSSLGESTTHLENENNS 1087 (1127)
Q Consensus 1027 V~~~L~~aLe~~~s~~~~df~Eykyrd--~L~~Q-------------~---~~~l-~~~l~~~~~~~~~~~~~~~~~~~~ 1087 (1127)
-+..+.+.+ .+-+.-|-||+ ++..| . ..|+ |.|...+..+..-
T Consensus 627 ~i~~l~~ii-------~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~----------- 688 (1133)
T KOG1943|consen 627 RIAGLLSII-------PPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL----------- 688 (1133)
T ss_pred Hhhhhhhhc-------cHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-----------
Confidence 222221111 12234444555 45554 1 2333 3476666665511
Q ss_pred CCchhHHHHHHHHHHHHHHHhccChhHHH
Q 035871 1088 VGNQKKEMISKAIRSLIEVYEGRKQFAVA 1116 (1127)
Q Consensus 1088 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1116 (1127)
-++=++.+-+||..+-..|--.|....+
T Consensus 689 -~n~i~~~av~av~~l~s~y~~~d~~~~~ 716 (1133)
T KOG1943|consen 689 -PNQIRDAAVSAVSDLVSTYVKADEGEEA 716 (1133)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 1244556666888888887766665444
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.078 Score=66.84 Aligned_cols=180 Identities=17% Similarity=0.187 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
+....+++++. .-+.|+|+.+|..|.|+||.+ .+..+++.+++.|...++|++.-||-+||.|++++=+.=
T Consensus 88 ~~~lLavNti~-kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld- 158 (757)
T COG5096 88 ELALLAVNTIQ-KDLQDPNEEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD- 158 (757)
T ss_pred HHHHHHHHHHH-hhccCCCHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-
Confidence 44455666543 557899999999999999988 567788999999999999999999999999999987530
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHH
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVS 950 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk 950 (1127)
.+ .....-+.-+... +..|.| .|.+||+.+|-.+-.- . ...+..+.+. .+.
T Consensus 159 ~~------------l~~~~g~~~~l~~---l~~D~dP~Vi~nAl~sl~~i~~e----~--------a~~~~~~~~~-~i~ 210 (757)
T COG5096 159 KD------------LYHELGLIDILKE---LVADSDPIVIANALASLAEIDPE----L--------AHGYSLEVIL-RIP 210 (757)
T ss_pred Hh------------hhhcccHHHHHHH---HhhCCCchHHHHHHHHHHHhchh----h--------hhhHHHHHHH-Hhh
Confidence 00 0111101111111 234555 8999999999888311 0 0112222221 112
Q ss_pred hhc--cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 951 CVT--TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 951 ~l~--~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+. ..+.-++|+=.--++.+.... ...+-....|...+..-..+.|--|=..|..-+.
T Consensus 211 ~l~~~~~~~~~~~~~~~~le~L~~~~----~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~ 270 (757)
T COG5096 211 QLDLLSLSVSTEWLLLIILEVLTERV----PTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVIL 270 (757)
T ss_pred hccchhhhhhHHHHHHHHHHHHHccC----CCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHH
Confidence 211 222224666665555554321 1222256677777777767777766666665543
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.7 Score=58.07 Aligned_cols=141 Identities=25% Similarity=0.306 Sum_probs=94.8
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcch-hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLK-ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~-~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
+...+-.+.+.+|+-|..||++|-.-.=.-|.+ +-|..| .+-+.|....||-||..-+|.+|+ .+.+.+
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V-----h~R~~DssasVREAaldLvGrfvl-----~~~e~~ 890 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV-----HGRLNDSSASVREAALDLVGRFVL-----SIPELI 890 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH-----HHhhccchhHHHHHHHHHHhhhhh-----ccHHHH
Confidence 334555556899999999999973322112322 334444 355789999999999999999984 233345
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRsnAvRA 916 (1127)
....+.|.....|+...||-++---|-.||++- | .++. +.-+|-.+++-..|.+. |+-=+...
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~----------p----df~~--i~~~cakmlrRv~DEEg~I~kLv~et 954 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEET----------P----DFSK--IVDMCAKMLRRVNDEEGNIKKLVRET 954 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC----------C----Chhh--HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 566677777788999999999999999999751 1 1221 22233334455677776 88777777
Q ss_pred Hhhhhhcccc
Q 035871 917 LGNLSRFVKY 926 (1127)
Q Consensus 917 LGnLl~~l~~ 926 (1127)
+-++ +|.+.
T Consensus 955 f~kl-WF~p~ 963 (1692)
T KOG1020|consen 955 FLKL-WFTPV 963 (1692)
T ss_pred HHHH-hccCC
Confidence 7666 44444
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.044 Score=69.01 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhccCC-chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 890 HLMASLTESALNLTKDG-DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 890 ~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
+.....+....+-.+|. +.+|+.|.|.||.| +...+.+-+++.+.+|++++++.||-||+.|++
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l---------------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~ 152 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL---------------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVA 152 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 33444455555555554 48999999999998 456788999999999999999999999999999
Q ss_pred hhhc-cccccccCCCchhHH-HHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 969 NLFL-NETINLEDMDWAPSV-FSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 969 nl~~-n~~i~~~~~~wa~~v-~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
++++ ++... +.. ..-+++.+..+.+-+|--+|-.+|..+
T Consensus 153 kly~ld~~l~-------~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 153 KLYRLDKDLY-------HELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHhcCHhhh-------hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 9994 33222 223 334566666889999999999999754
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.15 Score=58.62 Aligned_cols=197 Identities=18% Similarity=0.173 Sum_probs=125.8
Q ss_pred HHhhHHHHHccCChhHHHHHHHHHhccchh-HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc-ccc
Q 035871 755 IEKHMPLILQHISSMVRTAAVTCFAGITSS-VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ-VSQ 832 (1127)
Q Consensus 755 ie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~-~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~-L~~ 832 (1127)
+...+ ..+.+.....|.+|...+-++-.. +....=.+++..++..+ +..++-..+.-+..|++++|.+++--- -.+
T Consensus 45 L~~~I-d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~-~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAI-DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDAL-LKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 33444 345777789999999888875422 21112224456666644 466676666778899999999975311 123
Q ss_pred chHHHHHHHHHHHHhcCCCCc--chhchHHHHHHhhhhhhhhcccccCCCCCCccccc--HHHHHHHHHHH-Hh------
Q 035871 833 SAEIIDKFIHAVEINTHDPLV--SVRITASWALANICDSIRHCIDDFAFKPSIDSNAN--SHLMASLTESA-LN------ 901 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~--~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is--~~lL~~L~e~a-L~------ 901 (1127)
...+++.+.+.|...+.|... .+|..++.|||=++=-..... +.+. .+.+..+.... ++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~----------~~~~~~~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE----------EETEELMESLESIFLLSILKSDGNAP 192 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh----------hHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 455677778888887777664 567788889997764322111 0111 01122111100 11
Q ss_pred --hccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 902 --LTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 902 --a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
...|...|...|..|-|-|+..++...+ ....+..++.|...|...+..||-.|..||+-++
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~--------~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKL--------EDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1123346999999999999966665332 1346889999999999999999999999998776
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.23 Score=62.64 Aligned_cols=217 Identities=15% Similarity=0.222 Sum_probs=145.6
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKF 840 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~a 840 (1127)
.++|+.+.+|..|..-++.+-... ..=+....+.++. +.+..++|+|+.|=-.|++.+.-++ +|| ++.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~-i~ld~LkdedsyvyLnaI~gv~~Lcevy~---------e~i 803 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLA-IALDTLKDEDSYVYLNAIRGVVSLCEVYP---------EDI 803 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHH-HHHHHhcccCceeeHHHHHHHHHHHHhcc---------hhh
Confidence 467888899999999998853311 1122333455665 4568889999999999999877664 222 334
Q ss_pred HHHHHH---hcCCCC-cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhhhHHH
Q 035871 841 IHAVEI---NTHDPL-VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVR 915 (1127)
Q Consensus 841 i~aLl~---~l~D~~-~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRsnAvR 915 (1127)
.+.+.+ +..+.. ..-|.+-..|++|+..++.. +.-.....|+...++-..|+|. -|.++.-
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge--------------l~~~y~~~Li~tfl~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE--------------LVFKYKAVLINTFLSGVREPDHEFRASSLA 869 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHhcCCchHHHHHhHHH
Confidence 444433 233333 67888999999999887642 2223455678888888888884 8999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhccccccccC--CCchhHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLED--MDWAPSVFSILL 992 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~n~~i~~~~--~~wa~~v~~~Ll 992 (1127)
++|++++.+.+.- ++|.-..+..++... .+|.+-||..|.+-+.-+++....-+.+ ....-..+..+.
T Consensus 870 ~lg~Lcq~~a~~v---------sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 870 NLGQLCQLLAFQV---------SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHHHHHhhhh---------hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 9999998888742 235666666666666 4688999999999998887642111000 011224456667
Q ss_pred HHHhcCCChHHHHHHHHHhc
Q 035871 993 LLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 993 ~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
..++++..--+|.+|..+|-
T Consensus 941 ~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HHHhcCchhHHHHHHHHHHH
Confidence 77777777777777766653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.8 Score=54.70 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 035871 490 HIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLT 569 (1127)
Q Consensus 490 ~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~ 569 (1127)
.|++.|.--.-..|++ .++-+..-+.=|+.-+|.-. |+++..++...++.+.++|. +++.+++..+.
T Consensus 138 EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~------P~l~e~f~~~~~~lL~ek~h------GVL~~~l~l~~ 204 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKV------PDLVEHFVIAFRKLLCEKHH------GVLIAGLHLIT 204 (866)
T ss_pred HHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcC------chHHHHhhHHHHHHHhhcCC------ceeeeHHHHHH
Confidence 3445555555566677 66667777777777777665 58999999999998887663 57888888888
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHh------hhhcCCC-CchHhHHHHHHHHHHhhChhh
Q 035871 570 AALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQ------CSERLAS-PAICFESLQALRAVSHNYPNI 636 (1127)
Q Consensus 570 avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~------~~~~~~~-~~vRlEAlQvL~ala~~yp~l 636 (1127)
.+....|..-+-..-+.. .-...|.++.. |.-++.+ +=+.++.|+.|+-+-++.+..
T Consensus 205 e~c~~~~~~l~~fr~l~~----------~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da 268 (866)
T KOG1062|consen 205 ELCKISPDALSYFRDLVP----------SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA 268 (866)
T ss_pred HHHhcCHHHHHHHHHHHH----------HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence 877765532221110000 00012222221 1112222 347889999999888887653
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=55.66 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=71.1
Q ss_pred chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCC
Q 035871 854 SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHP 932 (1127)
Q Consensus 854 ~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~ 932 (1127)
|-|.-+-++|+.++-++... ..+.+..+++-.++...|.| +||..|+.||.|+.+..+.+.+
T Consensus 1 n~R~ggli~Laa~ai~l~~~--------------~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l--- 63 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKD--------------ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL--- 63 (97)
T ss_pred CchhHHHHHHHHHHHHchHh--------------HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35777888999888776543 23446677777777789999 7999999999999977775432
Q ss_pred CCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 933 ASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 933 ~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
.....++++|.+.+.|.+..||- +|.-|-+++
T Consensus 64 ------~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 64 ------PYFNEIFDALCKLSADPDENVRS-AAELLDRLL 95 (97)
T ss_pred ------HHHHHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence 23688999999999999999985 445555544
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.074 Score=66.74 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=124.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhhc--ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISC--FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~--~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..++|+.+.+|+.|.+.|.-++- +++ ...+-+.+....+..++|.++-|=-+|.-++.-+|+..
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~---~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------- 799 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKA---TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------- 799 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchh---hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-----------
Confidence 34699999999999999998863 333 23455888999999999999999999999999999852
Q ss_pred CCcccccHHHHHHHHHHHHhhccCC--c---h---hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 035871 882 SIDSNANSHLMASLTESALNLTKDG--D---K---IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT 953 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~--D---K---VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~ 953 (1127)
+...+..+.|.=.+..+-+ | | |=.+-++|+|.|. ....+..++..++.++
T Consensus 800 ------~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~----------------~~y~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 800 ------PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV----------------FKYKAVLINTFLSGVR 857 (982)
T ss_pred ------chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH----------------HHHHHHHHHHHHHhcC
Confidence 1234555555222222222 1 1 2224445555442 1245667777778888
Q ss_pred cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 954 TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 954 ~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+.+-..|-.+|.+||++++-.++..++ |-..++.-++.+.+.+..+-||..|+.-+.
T Consensus 858 epd~~~RaSS~a~lg~Lcq~~a~~vsd--~~~ev~~~Il~l~~~d~s~~vRRaAv~li~ 914 (982)
T KOG4653|consen 858 EPDHEFRASSLANLGQLCQLLAFQVSD--FFHEVLQLILSLETTDGSVLVRRAAVHLLA 914 (982)
T ss_pred CchHHHHHhHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHccCCchhhHHHHHHHHH
Confidence 766666888999999999776665544 999999999999999999999999998886
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.13 Score=54.31 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc
Q 035871 810 VASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN 888 (1127)
Q Consensus 810 ~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is 888 (1127)
+|.||.-|+.++|.++ .||.+ ++..++.+...++|+++.||..|.-.|..+-.. .+- .+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~i----------k~k 61 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMI----------KVK 61 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cce----------eeh
Confidence 6889999999999986 55544 678889999999999999999999888887542 110 222
Q ss_pred HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhh
Q 035871 889 SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSR 922 (1127)
Q Consensus 889 ~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~ 922 (1127)
++++..++.+ ..++++.||..|...+..++.
T Consensus 62 ~~l~~~~l~~---l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 62 GQLFSRILKL---LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred hhhhHHHHHH---HcCCCHHHHHHHHHHHHHHHH
Confidence 3333444332 134555899999999999963
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.56 Score=57.95 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCC-CHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD-VASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De-~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~ 846 (1127)
...|..-.|||+..|...-. .++.. .| .+++ .+...+.+.-++...+..|+- ..++.+..
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~-------~~i~~-~i---~~~~~~~~ea~~~~~~~~~~~~~Pt~--------~~l~~l~~ 400 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPAL-------KFIKQ-WI---KNKKITPLEAAQLLAVLPHTARYPTE--------EILKALFE 400 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHH-------HHHHH-HH---HcCCCCHHHHHHHHHHHHHhhhcCCH--------HHHHHHHH
Confidence 56888999999999876511 11221 11 1222 223344444444444434433 45555555
Q ss_pred hcCC----CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 847 NTHD----PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 847 ~l~D----~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
.+++ ++..+|..|.-++|++......+...-+ ..+-.+++..+.+.+-.+.+++| ..+--+.+||||++
T Consensus 401 l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 401 LAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP------DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC------hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 5444 3557888999999999876543321100 01223344444443333333333 45778999999995
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhc-c--CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc-
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVT-T--GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD- 997 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~-~--~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~- 997 (1127)
...++..|...+. + -+..+|--|.+||.++-.. .-..+.+.|+.+..+
T Consensus 475 -------------------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~---------~p~~v~~~l~~i~~n~ 526 (574)
T smart00638 475 -------------------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR---------DPRKVQEVLLPIYLNR 526 (574)
T ss_pred -------------------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh---------CchHHHHHHHHHHcCC
Confidence 1345566666665 2 3467999999999976422 125688888888876
Q ss_pred CCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 998 SSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
..+..|||.|..+|... +-...++..+...+..
T Consensus 527 ~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 527 AEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNK 559 (574)
T ss_pred CCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhh
Confidence 67889999999999721 1122466666666654
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.73 Score=53.11 Aligned_cols=111 Identities=24% Similarity=0.234 Sum_probs=69.9
Q ss_pred hhHHHHHccCC--hhHHHHHHHHHhccchhHHhhc-chhHHH---HHHHHHHhh--h---------ccCCCHhHHHHHHH
Q 035871 757 KHMPLILQHIS--SMVRTAAVTCFAGITSSVFFSL-LKETQE---FIISSLIDS--A---------LHDDVASVRSAACR 819 (1127)
Q Consensus 757 ~~Lp~~l~d~~--~~VRaaAc~cLa~Igs~~f~~L-p~~~q~---~~i~~Lll~--~---------~~De~~~VRaAA~R 819 (1127)
.+|-+.+.|.. +.+|.++++|||-+. |..= ..+... -++..+... . ...+++.|.+||..
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~---fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICT---FVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHH---HhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 45666777764 578999999999852 2111 111112 122211110 0 11234689999999
Q ss_pred HHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 820 AIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 820 ALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
+-|-+. ..|. ..=..+++..++.+...|+.++.+||+-|.-+|+=|-+...
T Consensus 209 aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 209 AWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999875 2222 00123457788888889999999999999999998876554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.3 Score=59.77 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=161.1
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKF 840 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~a 840 (1127)
.+.|....||.+|.+|.-.| ...++......++..++.+. .+..+-=+.+++..||.++ +.|..- +.+..+.
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai----~~~~~~~aVK~llpsll~~l-~~~kWrtK~aslellg~m~~~ap~qL--s~~lp~i 296 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAI----MRCLSAYAVKLLLPSLLGSL-LEAKWRTKMASLELLGAMADCAPKQL--SLCLPDL 296 (569)
T ss_pred HhhccchhhhHHHHHHHHHH----HHhcCcchhhHhhhhhHHHH-HHHhhhhHHHHHHHHHHHHHhchHHH--HHHHhHh
Confidence 34566789999998887764 33445444444455565444 4447778889999999886 434332 2346788
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhh------------hcccccCCC--CC--------CcccccHHHHHHHHHH
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIR------------HCIDDFAFK--PS--------IDSNANSHLMASLTES 898 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~------------~~~~~~~~~--~~--------~~~~is~~lL~~L~e~ 898 (1127)
++.+.+.|.|+.+.||-.+--+|=++|+.+. ....++.-. ++ +...+.+..|..|+..
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpi 376 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPI 376 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHH
Confidence 8999999999999999999999999998522 111111000 00 0001222334444444
Q ss_pred HHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHH----HhhccCCccchhhHHHHHHhhhcc
Q 035871 899 ALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALV----SCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 899 aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLl----k~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
.-+...+.+ ..+.-++-..||+..+..+ +.++...++.|+ +.+.+..+.||-=|+.|||.+...
T Consensus 377 L~R~l~eRst~~kr~t~~IidNm~~LveD-----------p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 377 LKRGLAERSTSIKRKTAIIIDNMCKLVED-----------PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHhhcC-----------HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 444455655 4778899999999866632 234445555554 444566899999999999998643
Q ss_pred ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC-chHHHHHHHHHHHHH
Q 035871 974 ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK-SFSDVVQGLEHILEN 1037 (1127)
Q Consensus 974 ~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~-~~~~V~~~L~~aLe~ 1037 (1127)
. + +.--+.+.+.|...+++++--+=|.-+|..|+-. ...+|- ++.++...++....+
T Consensus 446 ~----g-~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~ev--l~~~~v~~~~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 446 L----G-EVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEV--LAGLGVEKVEDILPEILANASS 503 (569)
T ss_pred H----H-hhcccccccHHHHhhccchhhhhhHHHhhhHHHH--HhcccchHHHHHHHHHHHHHhh
Confidence 2 1 1111456778889999999999999999999721 123443 355666666555543
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=10 Score=49.29 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHhccchhHHhhcch-hHHH-HHHHHHHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLK-ETQE-FIISSLIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~-~~q~-~~i~~Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai~a 843 (1127)
+.-...|...+|++-+--...=|. +.-+ ++++ .++-...+..=..||.||+.+|.++ .|+ |..-...+.+.
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~-hVfP~f~s~~g~Lrarac~vl~~~~~~df~----d~~~l~~ale~ 506 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN-HVFPEFQSPYGYLRARACWVLSQFSSIDFK----DPNNLSEALEL 506 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH-HhhHhhcCchhHHHHHHHHHHHHHHhccCC----ChHHHHHHHHH
Confidence 444556666666654221111121 2223 4444 5556778888889999999999985 322 23233456666
Q ss_pred HHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc--CCchhhhhHHH-HHhh
Q 035871 844 VEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK--DGDKIKSNAVR-GLGN 919 (1127)
Q Consensus 844 Ll~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D~DKVRsnAvR-ALGn 919 (1127)
..+.+. |....||+.||-||--+-...... ++.+++ .+.-+++..|+.++ ++|.+ +|... -.+.
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~----------~e~~~~-hvp~~mq~lL~L~ne~End~L-t~vme~iV~~ 574 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQA----------DEKVSA-HVPPIMQELLKLSNEVENDDL-TNVMEKIVCK 574 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhh----------hhhHhh-hhhHHHHHHHHHHHhcchhHH-HHHHHHHHHH
Confidence 666666 999999999999998766543211 112322 24445555555555 33332 22222 2233
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc---CCccchhhHHHHHHhh
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT---GNVKVQWNVCRALSNL 970 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~---~n~KVRWNAc~ALGnl 970 (1127)
+..-+.+ =..++.....++..+++.+ .+.-+.=-|--|.|-+
T Consensus 575 fseElsP---------fA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 575 FSEELSP---------FAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HHHhhch---------hHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 3221111 0123445555566666653 3344555566666665
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.4 Score=51.85 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=46.8
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
-.|.-||+-||-||..++-.+.+. -.-+.+..+|-.|++|.+-.||=.|+.+|-+|=..+
T Consensus 498 LEN~ivRsaAv~aLskf~ln~~d~-----------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 498 LENNIVRSAAVQALSKFALNISDV-----------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HhhhHHHHHHHHHHHHhccCcccc-----------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 466789999999999886333221 224667788889999999999999999999986443
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=9.9 Score=49.81 Aligned_cols=428 Identities=15% Similarity=0.113 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 035871 489 GHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCL 568 (1127)
Q Consensus 489 g~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL 568 (1127)
-.++.++|.-|+.+|.+ ++..+.=.+-|.++-+.+ |+|++|...|+..+..+.. ..+....-.++.-.|
T Consensus 336 ~eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~-----rlp~~Lad~vi~svid~~~-----p~e~~~aWHgacLaL 404 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTS-----RLPPELADQVIGSVIDLFN-----PAEDDSAWHGACLAL 404 (1133)
T ss_pred HHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHc-----cCcHHHHHHHHHHHHHhcC-----cCCchhHHHHHHHHH
Confidence 56788999999999766 888888899999988876 5558999999988766332 222222445666666
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhh----hcCCCCchHhHHHHHHHHHHhhC-hhhhhhhHHH
Q 035871 569 TAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCS----ERLASPAICFESLQALRAVSHNY-PNIMSSYWQQ 643 (1127)
Q Consensus 569 ~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~----~~~~~~~vRlEAlQvL~ala~~y-p~l~~~~~~~ 643 (1127)
+++.-..-..+.-..-+.. ++..=+.|. ....+..||=-|--++-|++|.| |.-+.++...
T Consensus 405 AELA~rGlLlps~l~dVvp--------------lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~ 470 (1133)
T KOG1943|consen 405 AELALRGLLLPSLLEDVVP--------------LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS 470 (1133)
T ss_pred HHHHhcCCcchHHHHHHHH--------------HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH
Confidence 6655443333311100000 111112222 12344679999999999999888 6666665554
Q ss_pred HHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHH-HHhhhcccCccccccccccCCCCcchhhhhhc
Q 035871 644 VSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDES-LRAISGFKGTEDLLDDKLLDNPFTSDCIRIKN 722 (1127)
Q Consensus 644 l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~-lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~ 722 (1127)
+. ..+|..+.. | .++ .|+-+|...+.|. +|.-+--.|-+.++
T Consensus 471 L~---s~LL~~AlF-D----------rev-----ncRRAAsAAlqE~VGR~~n~p~Gi~Lis------------------ 513 (1133)
T KOG1943|consen 471 LA---SALLIVALF-D----------REV-----NCRRAASAALQENVGRQGNFPHGISLIS------------------ 513 (1133)
T ss_pred HH---HHHHHHHhc-C----------chh-----hHhHHHHHHHHHHhccCCCCCCchhhhh------------------
Confidence 43 333332222 2 112 4665555555554 23111111211111
Q ss_pred cCCCCcccccchhhhhhhhhh-hhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHH
Q 035871 723 ISSAPLYEQESSEDIKESAKA-FQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSL 801 (1127)
Q Consensus 723 ~~~~p~~~~~~~~~~~~~~~~-~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~L 801 (1127)
..--|--...+||..-++. +..-..|-..+++..+..-+.|-+..+|..|..||.++.-..-+.+ ...+...+
T Consensus 514 --~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~----a~~~L~~l 587 (1133)
T KOG1943|consen 514 --TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL----ADYVLPPL 587 (1133)
T ss_pred --hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh----cccchhhh
Confidence 0000111123444332221 1111133345566555555677889999999999998533221111 11111112
Q ss_pred HhhhccCCCHhHHHHHHHHHhhhh-----cc---c---------------cc--------------------------cc
Q 035871 802 IDSALHDDVASVRSAACRAIGVIS-----CF---P---------------QV--------------------------SQ 832 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RALGvlv-----~~---p---------------~L--------------------------~~ 832 (1127)
| ..+--.++..|--..-|.|.++ +. + .+ .+
T Consensus 588 l-d~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 588 L-DSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred h-hhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 1 2112233334433333333321 11 0 00 01
Q ss_pred ch---HHH-HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-Cc
Q 035871 833 SA---EII-DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GD 907 (1127)
Q Consensus 833 d~---~fv-~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~D 907 (1127)
+. .|+ +..-.-+..++.+++ .+|..|-||+|.++.......+ .-...++.+.+.. ++++ +.
T Consensus 667 ~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~----------~~~~~li~~~ls~---~~~~~~~ 732 (1133)
T KOG1943|consen 667 DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADE----------GEEAPLITRYLSR---LTKCSEE 732 (1133)
T ss_pred chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCc----------hhhhHHHHHHHHH---hcCchHH
Confidence 11 111 111112222345677 8999999999999998875432 1111234444433 3566 34
Q ss_pred hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC-----CccchhhHHHHHHhhhccccccccCCC
Q 035871 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG-----NVKVQWNVCRALSNLFLNETINLEDMD 982 (1127)
Q Consensus 908 KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~-----n~KVRWNAc~ALGnl~~n~~i~~~~~~ 982 (1127)
++|.--.-|+|.+-+++-.- .+.|.+ ++++-+. .+.-|-+.--||..+..+-.. .....
T Consensus 733 ~~r~g~~lal~~lp~~~i~~-----------~~q~~l----c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~-~~~~~ 796 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHR-----------HLQEKL----CKLVLELLPSDAWAEARQQNVKALAHVCKTVTS-LLFSE 796 (1133)
T ss_pred HHHHHHHHHHccCcHHhhch-----------HHHHHH----HHHHhccCcccccHHHHHHHHHHHHHHHHHHHH-hhccc
Confidence 89988888888774332221 133433 4554433 334444555555555544321 11233
Q ss_pred chhHHHHHHHHHHhcCCC-------hHHHHHHHHHhcCCC
Q 035871 983 WAPSVFSILLLLLRDSSN-------FKIRIQAAAALAVPS 1015 (1127)
Q Consensus 983 wa~~v~~~Ll~ll~~~~N-------FKVRi~AA~AL~~p~ 1015 (1127)
--.++++.|++++.|..- -=||..|-.||....
T Consensus 797 ~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 797 SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 457899999999954221 138888888886443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=6.9 Score=49.33 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=91.9
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 035871 437 TCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLF 516 (1127)
Q Consensus 437 t~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlL 516 (1127)
.-=|-||+|.|-.||.++++.|=..-...|++.|- -+...|..-++.=+|..++
T Consensus 187 ~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP--------------------------~ffkllttSsNNWmLIKii 240 (877)
T KOG1059|consen 187 VEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP--------------------------LFYKLLVTSSNNWVLIKLL 240 (877)
T ss_pred HHhccCCCchHHHHHHHHHHHHHhhCCcccccccH--------------------------HHHHHHhccCCCeehHHHH
Confidence 33578999999999999999987664444555441 1233445556667899999
Q ss_pred HHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCC
Q 035871 517 KILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEV 596 (1127)
Q Consensus 517 KcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~ 596 (1127)
|.+++|..--| ||-.-|++++.+-+.. +..-.--..|.-.|++.. +++|-++.
T Consensus 241 KLF~aLtplEP--RLgKKLieplt~li~s------------T~AmSLlYECvNTVVa~s-------------~s~g~~d~ 293 (877)
T KOG1059|consen 241 KLFAALTPLEP--RLGKKLIEPITELMES------------TVAMSLLYECVNTVVAVS-------------MSSGMSDH 293 (877)
T ss_pred HHHhhccccCc--hhhhhhhhHHHHHHHh------------hHHHHHHHHHHHHheeeh-------------hccCCCCc
Confidence 99999865444 7766666666654322 101001125555555531 11222211
Q ss_pred CCcchhHHHH---HhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHH
Q 035871 597 DKRSGVLFTL---LQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKIL 652 (1127)
Q Consensus 597 ~~~s~~L~~L---l~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L 652 (1127)
+-.+..+ ++-.-.+....++-=.+-+++.+++-||..++.|-+ ++.+||
T Consensus 294 ---~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL 345 (877)
T KOG1059|consen 294 ---SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCL 345 (877)
T ss_pred ---HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHh
Confidence 1111111 111122334566666777899999999999998875 455565
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=12 Score=48.20 Aligned_cols=264 Identities=20% Similarity=0.191 Sum_probs=150.2
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
.|.+..||.+.+.-...+.+ .+|.++...-...+..+..+|+.+.||-.-..-+-.+..-++..+-....+..+++
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p----~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~ 483 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSP----ILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA 483 (759)
T ss_pred hcccchHHHHHhccccccCc----cCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh
Confidence 47778899887655444321 24444433222235567789999999999998776655434433333344666788
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhc
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~ 923 (1127)
+....+|.+..||...-|.+--++..+... +.++-+..++. .-..|+|.+=.-+|.-|+..+
T Consensus 484 i~el~~d~~wRvr~ail~~ip~la~q~~~~-------------~~~~~~~~l~~-----~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 484 IVELAEDLLWRVRLAILEYIPQLALQLGVE-------------FFDEKLAELLR-----TWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhH-------------HhhHHHHHHHH-----hhhhhhHHHHHHHHHHHhHHH
Confidence 888889999999999999998888765532 11222333332 234554444334444444333
Q ss_pred cccCCCCCCCCCCChhH-HHHHHHHHHHhhccCCccchhh---HHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 924 VKYTSSSHPASLGDSRW-LERIVQALVSCVTTGNVKVQWN---VCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 924 l~~~~~~~~~~~g~~~~-~E~~i~aLlk~l~~~n~KVRWN---Ac~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
+... | ..| .++.+..++....++|.++|-- +++-|..++.++.+ .....+.+..++ .|.
T Consensus 546 ~~~~--------G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~-------~~~Llp~~~~l~-~D~ 608 (759)
T KOG0211|consen 546 VETF--------G-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT-------CEDLLPVFLDLV-KDP 608 (759)
T ss_pred HHHh--------C-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH-------HHHHhHHHHHhc-cCC
Confidence 2221 2 223 4666777777776677888864 44444555554422 345566666666 457
Q ss_pred ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHH------------------HHH
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ------------------KSS 1061 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q------------------~~~ 1061 (1127)
+--||+++|..|-....-.+. +.+=.-+..+++.+.++ .--+-||+..+-.| ..+
T Consensus 609 vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d---~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~~~~a 681 (759)
T KOG0211|consen 609 VANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSD---QELDVRYRAILAFGSIELSRLESSLDVRDKKQLIA 681 (759)
T ss_pred chhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccC---cccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777888888888632221111 11222233555555432 12344555555544 467
Q ss_pred HHHHHHHHHhhc
Q 035871 1062 FLEEWFKVLCSS 1073 (1127)
Q Consensus 1062 ~l~~~l~~~~~~ 1073 (1127)
|+|+|=+++-..
T Consensus 682 ~~~~~~~~~~~~ 693 (759)
T KOG0211|consen 682 FLEQDSHVLEVE 693 (759)
T ss_pred HHhhhhHHHHHH
Confidence 777665554433
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.06 E-value=4.3 Score=50.19 Aligned_cols=262 Identities=14% Similarity=0.128 Sum_probs=138.7
Q ss_pred hHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh---c
Q 035871 751 WSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVIS---C 826 (1127)
Q Consensus 751 W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv---~ 826 (1127)
-..+++.+| ..|.+..|.||.-|++-.|.+..-. ..-.+.+ -..|=. ++..-+..+.|-|-..-..|+--+. -
T Consensus 602 l~~ivStiL-~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~-iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 602 LSMIVSTIL-KLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGN-ILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred hHHHHHHHH-HHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhH-HHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 345555555 5788999999999988877754311 0000000 011111 1222334455555544444443332 1
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 827 FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 827 ~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
|-++.- + +...++.|..-++++...|-.+..=-+|-||+.- . +-++..-+-+++-..+...+..
T Consensus 679 ~~~mqp-P--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~---------p----eyi~~rEWMRIcfeLvd~Lks~ 742 (975)
T COG5181 679 FRSMQP-P--ISGILPSLTPILRNKHQKVVANTIALVGTICMNS---------P----EYIGVREWMRICFELVDSLKSW 742 (975)
T ss_pred ccccCC-c--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcC---------c----ccCCHHHHHHHHHHHHHHHHHh
Confidence 111110 1 2345555666678888888888888888888631 1 1344433444544444455544
Q ss_pred c-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchh
Q 035871 907 D-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985 (1127)
Q Consensus 907 D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~ 985 (1127)
. .+|.||+..+|.|.+.+-+ +.++..|+++|+...-.-|--...|+|-+..- +++ =
T Consensus 743 nKeiRR~A~~tfG~Is~aiGP---------------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~------cgp--f 799 (975)
T COG5181 743 NKEIRRNATETFGCISRAIGP---------------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY------CGP--F 799 (975)
T ss_pred hHHHHHhhhhhhhhHHhhcCH---------------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh------cCc--h
Confidence 4 5999999999999755543 34677888887654444444344444443311 111 1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHH
Q 035871 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEE 1065 (1127)
Q Consensus 986 ~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~ 1065 (1127)
+|.|+|..=-. .+|--|.-.--.|++- -.+-.|+..-+.+-++.-.||++- .| ||....|.+.-+-.
T Consensus 800 sVlP~lm~dY~-TPe~nVQnGvLkam~f--mFeyig~~s~dYvy~itPlleDAl----tD------rD~vhRqta~nvI~ 866 (975)
T COG5181 800 SVLPTLMSDYE-TPEANVQNGVLKAMCF--MFEYIGQASLDYVYSITPLLEDAL----TD------RDPVHRQTAMNVIR 866 (975)
T ss_pred hhHHHHHhccc-CchhHHHHhHHHHHHH--HHHHHHHHHHHHHHHhhHHHHhhh----cc------cchHHHHHHHHHHH
Confidence 35666665553 3555666666666651 122344444455555555665531 21 45556666665533
Q ss_pred HH
Q 035871 1066 WF 1067 (1127)
Q Consensus 1066 ~l 1067 (1127)
+|
T Consensus 867 Hl 868 (975)
T COG5181 867 HL 868 (975)
T ss_pred HH
Confidence 33
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.018 Score=43.72 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
++.++..++|+++.||..|+++||+|++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 56788889999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.86 Score=54.34 Aligned_cols=191 Identities=17% Similarity=0.200 Sum_probs=130.9
Q ss_pred HHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhccccc
Q 035871 800 SLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDF 877 (1127)
Q Consensus 800 ~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~ 877 (1127)
.++.-+.+.+++.+|.++++.++.++ .|+. ...++.+++.+.... .+....-|..+--.+.-++-+++.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~-- 266 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWPD----DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH-- 266 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC--
Confidence 34434455566999999999999987 3222 224566666666666 677778899999999999999887542
Q ss_pred CCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCC---CCCC--CChhHHHHHHHHHHHhh
Q 035871 878 AFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSH---PASL--GDSRWLERIVQALVSCV 952 (1127)
Q Consensus 878 ~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~---~~~~--g~~~~~E~~i~aLlk~l 952 (1127)
....+.+.+|++. ..| +++...|+|++|-|+.-.+. -..+ .... --++....+++.|++..
T Consensus 267 --------~~~~~~~~~L~~l----L~~-~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklLykQR~F~~~~p~L~~~~ 332 (415)
T PF12460_consen 267 --------PLATELLDKLLEL----LSS-PELGQQAAKAFGILLSDSDD-VLNKENHANVKLLYKQRFFTQVLPKLLEGF 332 (415)
T ss_pred --------chHHHHHHHHHHH----hCC-hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhHHhHHHHHHHHHHHHHHH
Confidence 2233455566552 344 88999999999999754221 1100 0000 01234566777788887
Q ss_pred ccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 953 TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 953 ~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
++.+..+|.|--.||+.+++|-.... -.+..+.++|-|++.| +.+|-.||.++-..|.
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~v-l~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSV-LLPELPTLLPLLLQSL-SLPDADVLLSSLETLK 390 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 77665699999999999998743221 1235678999999999 7788889998888885
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.37 Score=51.56 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=99.9
Q ss_pred hHhHHHHHHHHHHhh-ChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccc-cchhHHHHHHHHHHHHHHhhh
Q 035871 618 ICFESLQALRAVSHN-YPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGF-IGEKVVTAAIKVLDESLRAIS 695 (1127)
Q Consensus 618 vRlEAlQvL~ala~~-yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l-~g~~~~l~A~klLdE~lra~~ 695 (1127)
+|..|+++|.+++++ -+..+..||..+ |-+....+ .....+....+-. ...+|+.+|+.+|..++....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~l-------lP~~~~~~--~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk 72 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPAL-------LPDSVLQG--RPATPSLLTCILKDPSPKVRAAAASALAALLEGSK 72 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHH-------CCCCCCcC--CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH
Confidence 799999999999998 888899999753 21110000 0000110000000 113788899999988865433
Q ss_pred cccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccC-ChhHHHHH
Q 035871 696 GFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHI-SSMVRTAA 774 (1127)
Q Consensus 696 g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~-~~~VRaaA 774 (1127)
.|...- ...+ ....+|-. ++. .++. +..-+-.-|-..++++ ++.+-...
T Consensus 73 ~~L~~A----------------e~~~--~~~~sFts-----lS~-----tLa~--~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 73 PFLAQA----------------EESK--GPSGSFTS-----LSS-----TLAS--MIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred HHHHHH----------------HhcC--CCCCCccc-----HHH-----HHHH--HHHHHHHHHHHHHhcccccHHHHHH
Confidence 222211 1000 00011111 111 1221 1111222344566766 57788899
Q ss_pred HHHHhc-cchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh
Q 035871 775 VTCFAG-ITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 775 c~cLa~-Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv 825 (1127)
+.||+. +....|.+|+.+-...++.. +...+.+.|++||.++.-++|.++
T Consensus 123 lK~la~Lv~~tPY~rL~~~ll~~~v~~-v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRLPPGLLTEVVTQ-VRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHccCChhhcCHhHHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999998 46667999999887777774 457788899999999999999885
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=17 Score=48.25 Aligned_cols=229 Identities=17% Similarity=0.146 Sum_probs=137.1
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHH---HHhhhccCCCHhHHHHHHHHHhhh---hc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS---LIDSALHDDVASVRSAACRAIGVI---SC 826 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~---Lll~~~~De~~~VRaAA~RALGvl---v~ 826 (1127)
+.|+..|-..++..+...|..++.||..| +..+|.+.-+++... +|+.. +|.|-.-|.-|...|=.+ ..
T Consensus 696 ~~I~n~L~ds~qs~~~~~~~~rl~~L~~L----~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~ 770 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSSSPAQASRLKCLKRL----LKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQS 770 (1176)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHh
Confidence 33444555678888899999999999985 555564444433221 34454 898888888888877444 35
Q ss_pred ccccccch--HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHH-HHhhc
Q 035871 827 FPQVSQSA--EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTES-ALNLT 903 (1127)
Q Consensus 827 ~p~L~~d~--~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~-aL~a~ 903 (1127)
+...++|. .-++.++..|...+-.+...++..---|++-+--.-. ..++...+..+++- .+-.+
T Consensus 771 ~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~-------------~~ld~~~l~~li~~V~~~L~ 837 (1176)
T KOG1248|consen 771 SLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK-------------NILDDETLEKLISMVCLYLA 837 (1176)
T ss_pred hhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-------------ccccHHHHHHHHHHHHHHHh
Confidence 55566554 2356677767666655555555433344443332211 13445556666653 33446
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
..+.+|+..|++.+--+..-++...+.. ..|.++..++....+...|+|--+=+=|-.+.+-=-+... .+.
T Consensus 838 s~sreI~kaAI~fikvlv~~~pe~~l~~--------~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL-e~~ 908 (1176)
T KOG1248|consen 838 SNSREIAKAAIGFIKVLVYKFPEECLSP--------HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL-ESF 908 (1176)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCHHHHhh--------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH-Hhh
Confidence 6777999999999988876666544321 2577888888877888888887666666555432100000 012
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 984 APSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
.+...-.+++-++--++.|-|-.|.
T Consensus 909 ~pee~~klL~nIRK~r~R~~rK~a~ 933 (1176)
T KOG1248|consen 909 LPEEDMKLLTNIRKRRRRKKRKKAM 933 (1176)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 2234445566665555555555544
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.16 Score=56.76 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=67.1
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
|...+.++++..|--+.-|||++.+.. . |..|.-.+. .-|+|.||-.|+.|||-+. +
T Consensus 192 l~~~l~~~SalfrhEvAfVfGQl~s~~--a---------i~~L~k~L~d~~E~pMVRhEaAeALGaIa------~----- 249 (289)
T KOG0567|consen 192 LIDGLADDSALFRHEVAFVFGQLQSPA--A---------IPSLIKVLLDETEHPMVRHEAAEALGAIA------D----- 249 (289)
T ss_pred HHHhcccchHHHHHHHHHHHhhccchh--h---------hHHHHHHHHhhhcchHHHHHHHHHHHhhc------C-----
Confidence 445677888999999999999998765 2 222332221 2389999999999999983 3
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALAN 865 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGN 865 (1127)
+++++.|.+-+.|+..-||..+..||.-
T Consensus 250 e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 250 EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6889999999999999999999988863
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.05 Score=43.60 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.+++.|+..+++++..||..|+|||+||++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467888889999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.74 Score=57.58 Aligned_cols=226 Identities=19% Similarity=0.237 Sum_probs=137.5
Q ss_pred ccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 806 LHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+.+.|..||..-.|=|-.+ .+++.++.+++++...++.++.-||-+|..|++-|=-- -+. +-|
T Consensus 108 LQHPNEyiRG~TLRFLckL-------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~----~~~--L~p---- 170 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKL-------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN----FEH--LIP---- 170 (948)
T ss_pred ccCchHhhcchhhhhhhhc-------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh----hhh--hcC----
Confidence 4668888999998887766 67888999999999999999999999999999877532 000 000
Q ss_pred cccHHHHHHHHHHHHhhccCCchhhhhHH---------HHHhhhhhccccCC-CCCCC-----------CCCChhHHHHH
Q 035871 886 NANSHLMASLTESALNLTKDGDKIKSNAV---------RGLGNLSRFVKYTS-SSHPA-----------SLGDSRWLERI 944 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D~DKVRsnAv---------RALGnLl~~l~~~~-~~~~~-----------~~g~~~~~E~~ 944 (1127)
. -|+++...+. ++.+.-.+.||. |||-+++..+..=+ ++..+ ...++..-.+.
T Consensus 171 D-apeLi~~fL~-----~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~ 244 (948)
T KOG1058|consen 171 D-APELIESFLL-----TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY 244 (948)
T ss_pred C-hHHHHHHHHH-----hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH
Confidence 0 1233333322 233346888986 67777766554322 11110 00223334566
Q ss_pred HHHHHHhhccCCccchhhHHHHHHhhhcccccccc-------------CC--------------CchhHHHHHH----HH
Q 035871 945 VQALVSCVTTGNVKVQWNVCRALSNLFLNETINLE-------------DM--------------DWAPSVFSIL----LL 993 (1127)
Q Consensus 945 i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~-------------~~--------------~wa~~v~~~L----l~ 993 (1127)
|..+...|...+.-|++-|+-+|-++..+|+..-. +. +--..++..| +.
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLr 324 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLR 324 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77777788778889999999998888877654311 00 1111222222 22
Q ss_pred HHhcCCChHHHHHHHH-HhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHH
Q 035871 994 LLRDSSNFKIRIQAAA-ALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSF 1062 (1127)
Q Consensus 994 ll~~~~NFKVRi~AA~-AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~ 1062 (1127)
+| +.+++.||-.+-. ||.- .+..++.+++.=|-.-+.+ ..+.+.--.-+||.-|.+.++.+
T Consensus 325 vL-ss~dldvr~Ktldi~ldL-----vssrNvediv~~Lkke~~k--T~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 325 VL-SSPDLDVRSKTLDIALDL-----VSSRNVEDIVQFLKKEVMK--THNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred Hc-CcccccHHHHHHHHHHhh-----hhhccHHHHHHHHHHHHHh--ccccccccchHHHHHHHHHHHHH
Confidence 33 5666777766532 3331 1334577777766666655 23334445567888888884443
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.057 Score=41.00 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 944 IVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 944 ~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
+++.|++.++|.+.+||.+|+++||++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999874
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.31 Score=60.68 Aligned_cols=100 Identities=25% Similarity=0.225 Sum_probs=76.3
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
+.+|..+|+-...|.+-.||++|.-|||=|--..- +.|++. +--+.+.-||-||..|+-|||..+- +
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~-V~lLses~N~HVRyGaA~ALGIaCA----G 619 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPST-VSLLSESYNPHVRYGAAMALGIACA----G 619 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHH-HHHHhhhcChhhhhhHHHHHhhhhc----C
Confidence 46778889888899999999999999997643332 333332 2234577899999999999998842 2
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~ 867 (1127)
... ..+++-|...+.|+..-||.-|.-|+|=|.
T Consensus 620 tG~---~eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 620 TGL---KEAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred CCc---HHHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 211 467777777889999999999999998775
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.3 Score=49.69 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=89.5
Q ss_pred HHHcc-CChhHHHHHHHHHhccchhHHhhcchhHHH-HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 761 LILQH-ISSMVRTAAVTCFAGITSSVFFSLLKETQE-FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 761 ~~l~d-~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
..|+. .+|.++..|+-++++.....|.+- --++ ..+. ++..++.+.++.||-.|..||.++..- .+...-++
T Consensus 19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~--~Ir~~Ggi~-lI~~lL~~p~~~vr~~AL~aL~Nls~~---~en~~~Ik 92 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGNSAAFPFNQD--IIRDLGGIS-LIGSLLNDPNPSVREKALNALNNLSVN---DENQEQIK 92 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccChhHHH--HHHHcCCHH-HHHHHcCCCChHHHHHHHHHHHhcCCC---hhhHHHHH
Confidence 56664 479999999999999765443221 1122 2333 677889999999999999999988421 12222345
Q ss_pred HHHHHHHHh-c-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHH
Q 035871 839 KFIHAVEIN-T-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRG 916 (1127)
Q Consensus 839 ~ai~aLl~~-l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRA 916 (1127)
..++.+++. . ...+..|+..+--+|.||+-. . ++ ...+ ...+..+++- ...++.++|.++.+.
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~--------~~-~~~l-~~~i~~ll~L---L~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--N--------DY-HHML-ANYIPDLLSL---LSSGSEKTKVQVLKV 157 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--c--------ch-hhhH-HhhHHHHHHH---HHcCChHHHHHHHHH
Confidence 566666653 2 345788999999999999732 0 00 0011 1122333321 135667999999999
Q ss_pred Hhhhh
Q 035871 917 LGNLS 921 (1127)
Q Consensus 917 LGnLl 921 (1127)
|-||.
T Consensus 158 L~nLS 162 (254)
T PF04826_consen 158 LVNLS 162 (254)
T ss_pred HHHhc
Confidence 99996
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.86 E-value=37 Score=43.63 Aligned_cols=206 Identities=20% Similarity=0.211 Sum_probs=114.3
Q ss_pred ccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 764 QHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 764 ~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
-.+++.+|-.|++|||. | | ...+.+.|.-|..+|+..+ ..|+.-++.==..
T Consensus 304 I~~~~~LrvlainiLgk-----F--------------L-----~n~d~NirYvaLn~L~r~V-----~~d~~avqrHr~t 354 (866)
T KOG1062|consen 304 IRSNSGLRVLAINILGK-----F--------------L-----LNRDNNIRYVALNMLLRVV-----QQDPTAVQRHRST 354 (866)
T ss_pred ccCCchHHHHHHHHHHH-----H--------------h-----cCCccceeeeehhhHHhhh-----cCCcHHHHHHHHH
Confidence 45667888888888886 2 1 2345568888888888876 3565555555577
Q ss_pred HHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhc
Q 035871 844 VEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923 (1127)
Q Consensus 844 Ll~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~ 923 (1127)
|++.++|++..+|.+|-.-+=-|.++- ++ ..+...|++.+- +-.+.+|.+-+--+-.+..-
T Consensus 355 IleCL~DpD~SIkrralELs~~lvn~~---------------Nv-~~mv~eLl~fL~---~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 355 ILECLKDPDVSIKRRALELSYALVNES---------------NV-RVMVKELLEFLE---SSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhccc---------------cH-HHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHh
Confidence 888889999999999975544444320 11 112334444322 12345676655555555432
Q ss_pred cccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH-HhcCCChH
Q 035871 924 VKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL-LRDSSNFK 1002 (1127)
Q Consensus 924 l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l-l~~~~NFK 1002 (1127)
..+ +..| .|+.+.+.++..---|+--+.+++=.+..|..-.+. ..-....|.++... +.+-.+-+
T Consensus 416 faP----------~k~W---~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~rLy~a~~~~~~~~is~e~ 481 (866)
T KOG1062|consen 416 FAP----------DKRW---HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLRLYLALSEDTLLDISQEP 481 (866)
T ss_pred cCC----------cchh---HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-hHHHHHHHHHHhhhhhhhhhhhh
Confidence 222 2234 455666666554445666666776666655321111 11112233333221 11122333
Q ss_pred HHHHHHHHhcCCCcccccCCc--------------hHHHHHHHHHHHHH
Q 035871 1003 IRIQAAAALAVPSSVSDYGKS--------------FSDVVQGLEHILEN 1037 (1127)
Q Consensus 1003 VRi~AA~AL~~p~~R~~yG~~--------------~~~V~~~L~~aLe~ 1037 (1127)
.=--|++.+| .||.. =.+|+.-|++++++
T Consensus 482 l~qVa~W~IG------EYGdlll~~~~~~~p~~vtesdivd~l~~v~~~ 524 (866)
T KOG1062|consen 482 LLQVASWCIG------EYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS 524 (866)
T ss_pred HHHHHHHHhh------hhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh
Confidence 4556899999 57732 13466666666655
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.27 Score=59.57 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
.++...|+-...|.+-.||++|+-|||=+- + +.+..++.+ +.-+.+..|+-||+..+-|||..+. +.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc------~--~D~~~lv~t-velLs~shN~hVR~g~AvaLGiaca----g~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVC------C--DDRDLLVGT-VELLSESHNFHVRAGVAVALGIACA----GT 617 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeE------e--cCcchhhHH-HHHhhhccchhhhhhhHHHhhhhhc----CC
Confidence 455667887788999999999999999653 2 233444543 2334567899999999999999842 22
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.. ..+++-|...+.|++.-||..|.-|+|-|.-
T Consensus 618 G~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 618 GD---KVATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred cc---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 21 3566667677899999999999999998763
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.68 E-value=5.6 Score=48.94 Aligned_cols=67 Identities=27% Similarity=0.186 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc-cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 794 QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS-QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 794 q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~-~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
..++.+.+++ ||.-||+||.-||..+.+ . +|.-..+...+++-..++|.+..||-+|+++|-||-+.
T Consensus 489 vrhIyNR~iL-----EN~ivRsaAv~aLskf~l----n~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 489 VRHIYNRLIL-----ENNIVRSAAVQALSKFAL----NISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHH-----hhhHHHHHHHHHHHHhcc----CccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 4455554442 788999999999998854 2 23322344556666779999999999999999999864
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=48 Score=44.30 Aligned_cols=146 Identities=26% Similarity=0.346 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhh---hcCCChhHHHHHHHHHHHHhcCCchhhh
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCL---LFDPCLKARMASASTLAAMLDGPSTVFL 467 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~i---L~Dps~KvR~aA~~~LsaLL~gsk~~ll 467 (1127)
..|+..|+.||..|-+. .=+.-|. -+ .+.+-+..| ..++.||+|.+|+..+.++|.|| + |.
T Consensus 109 ~svlr~~iscL~~lLra---Qd~~aW~--~~---------~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p-~-~~ 172 (1176)
T KOG1248|consen 109 GSVLRLAISCLEDLLRA---QDASAWS--YS---------STKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGP-P-FA 172 (1176)
T ss_pred chHHHHHHHHHHHHHHH---cchhhhc--cc---------cHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCC-C-CC
Confidence 36999999999998875 2245677 11 122333334 44589999999999999999995 3 34
Q ss_pred hhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHH
Q 035871 468 QVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARI 547 (1127)
Q Consensus 468 q~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i 547 (1127)
-.|+++. +...|.....+ |..+-.+...|-.++.|..|=. +|+.+|.+++.++.+.|..+.
T Consensus 173 ~~~~HpA----------~~~vak~cl~~-------~e~~~~~a~~t~v~~~L~Ll~~--~~~~~p~~li~sl~e~lL~i~ 233 (1176)
T KOG1248|consen 173 PDAEHPA----------SLSVAKFCLAL-------IESKLGSAENTTVLRSLMLLRD--VLSTFPRPLIKSLCEVLLNIT 233 (1176)
T ss_pred ccccchH----------HHHHHHHHHHH-------HHhhhchHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHhhc
Confidence 4465442 11222221111 1222224455556665554422 344488888888888776644
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHhcCCC
Q 035871 548 EEGFPLKTDQTGLLVAAISCLTAALSTSPA 577 (1127)
Q Consensus 548 ~~~~~~~~d~~al~VaaL~cL~avls~~~~ 577 (1127)
... ++. ++-.+|.||..+|...|.
T Consensus 234 ~~s-----~v~-v~~~~~q~l~~lf~~~~~ 257 (1176)
T KOG1248|consen 234 TES-----PVL-VLLEVLQCLHSLFKKHPT 257 (1176)
T ss_pred ccc-----hHH-HHHHHHHHHHHHHhcCCC
Confidence 332 323 566899999999988874
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.89 E-value=9.6 Score=44.28 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=94.4
Q ss_pred hcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 035871 440 LFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKIL 519 (1127)
Q Consensus 440 L~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcL 519 (1127)
|.-|+..|+.-|+..+.-|++.+-.. .+.|- +--.=.+++..+++++-.|.+. +-...+|.+
T Consensus 91 LiaddasVKiLackqigcilEdcDtn--aVsei---------------llvvNaeilklildcIggedde-VAkAAiesi 152 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTN--AVSEI---------------LLVVNAEILKLILDCIGGEDDE-VAKAAIESI 152 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchh--hHHHH---------------HHHhhhhHHHHHHHHHcCCcHH-HHHHHHHHH
Confidence 44567788999999999999987642 22221 1111257888889999987765 666666665
Q ss_pred HHhHhcccC---CCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChh-HHHHHHHHhhhcCCCC
Q 035871 520 MPLISCTPY---SRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPV-QVKQMFLEEISAGSVE 595 (1127)
Q Consensus 520 a~LVq~TPY---~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~-eV~~~L~~e~ssg~~~ 595 (1127)
..+- -+|- .-.+.+++.. ++.+.... ..+| -.|+-.+..+-.++|.+|.+. +|
T Consensus 153 kria-lfpaaleaiFeSellDd----lhlrnlaa--kcnd--iaRvRVleLIieifSiSpesanec-------------- 209 (524)
T KOG4413|consen 153 KRIA-LFPAALEAIFESELLDD----LHLRNLAA--KCND--IARVRVLELIIEIFSISPESANEC-------------- 209 (524)
T ss_pred HHHH-hcHHHHHHhcccccCCh----HHHhHHHh--hhhh--HHHHHHHHHHHHHHhcCHHHHhHh--------------
Confidence 5432 2221 0011222221 11111110 0122 256667777777777665432 22
Q ss_pred CCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh-hChhhhhhhHHHHHHHHHHHH
Q 035871 596 VDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH-NYPNIMSSYWQQVSTIVFKIL 652 (1127)
Q Consensus 596 ~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~-~yp~l~~~~~~~l~~vl~~~L 652 (1127)
+.||++..|.....+....-||.-++.....++. +|..-.- -.+.+.+.+|+++
T Consensus 210 --kkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefl-aQeglIdlicnII 264 (524)
T KOG4413|consen 210 --KKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL-AQEGLIDLICNII 264 (524)
T ss_pred --hhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc-chhhHHHHHHHHh
Confidence 5678888777666555556777778877777663 3322111 1234566677774
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.9 Score=51.34 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh
Q 035871 891 LMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn 969 (1127)
++.-++.-.|+-.+.+| +||.+.+--|..+.. + ...-+..+..+...+|.+.+.|.-+.||.-|-.||..
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d----~-----~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr 152 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSD----E-----NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR 152 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc----c-----ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 45555666677788888 599988777766642 1 1112334677788888889999999999999999998
Q ss_pred hhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 970 LFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 970 l~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+-..+ -.--..|+++|..++++|++-.||..|-.-+.+-+
T Consensus 153 lQ~d~------~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn 192 (892)
T KOG2025|consen 153 LQGDP------KDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDN 192 (892)
T ss_pred HhcCC------CCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCc
Confidence 76321 11124599999999999999999999888887544
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.2 Score=50.74 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=74.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccc--
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQ-- 829 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~-- 829 (1127)
.+++.++....++.++.||..|..|||- |.-+.++.-..-+. ++......++..||..|++++..+. .|+-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl-----~~Lld~~~a~~~l~-l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGL-----CCLLDKELAKEHLP-LFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HHHhChHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 5566666567889999999999999996 33444433222233 2334445559999999999998876 3332
Q ss_pred cccc-----hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhh
Q 035871 830 VSQS-----AEIIDKFIHAVEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 830 L~~d-----~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~ 867 (1127)
+... ........+.+...+.+.+..||.-|+-.++.|-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1111 1123456666777788889899999999999876
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=91.04 E-value=3.3 Score=49.48 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=134.6
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
++++..+-..+...++..|.+++.+++.+-+. ++.+. -+.++..+......++++.-|..+.+.++-++.---+|
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNK----WPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 34555555555666799999999999987543 22222 22333323222224567778888888887776555567
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc--------HHHHHHHHHHHHhhc
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN--------SHLMASLTESALNLT 903 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is--------~~lL~~L~e~aL~a~ 903 (1127)
.++. ....++.++..+.| ..+...||-+++=+....- ++...+ ..-.+. ...+.+|++..-
T Consensus 265 ~~~~-~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~----~~l~~~-~~a~vklLykQR~F~~~~p~L~~~~~--- 333 (415)
T PF12460_consen 265 GHPL-ATELLDKLLELLSS--PELGQQAAKAFGILLSDSD----DVLNKE-NHANVKLLYKQRFFTQVLPKLLEGFK--- 333 (415)
T ss_pred CCch-HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH----HhcCcc-ccchhhhHHhHHHHHHHHHHHHHHHh---
Confidence 7653 34667778788888 6678889999987765411 110000 000111 123445554321
Q ss_pred cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCc
Q 035871 904 KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 904 ~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
.-++.+|.|-..||.++++.++..-+. ...+++++-|++++.-.|..|+-++-..|-.+..+..-.. .+-
T Consensus 334 ~~~~~~k~~yL~ALs~ll~~vP~~vl~--------~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i--~~h 403 (415)
T PF12460_consen 334 EADDEIKSNYLTALSHLLKNVPKSVLL--------PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI--SEH 403 (415)
T ss_pred hcChhhHHHHHHHHHHHHhhCCHHHHH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH--HHH
Confidence 122239999999999999777653321 1267899999999998999999999999988876641111 123
Q ss_pred hhHHHHHHHHH
Q 035871 984 APSVFSILLLL 994 (1127)
Q Consensus 984 a~~v~~~Ll~l 994 (1127)
.+.+++.|+++
T Consensus 404 l~sLI~~LL~l 414 (415)
T PF12460_consen 404 LSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHhc
Confidence 45666666653
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.85 E-value=11 Score=47.55 Aligned_cols=237 Identities=20% Similarity=0.188 Sum_probs=144.6
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.++.++-|.||.-|.-.+=. +|...|+-.|... ..|. .-++|+||.|.+||+-.+-.+. +.++.=.-..
T Consensus 151 tLL~sskpYvRKkAIl~lyk----vFLkYPeAlr~~F-prL~-EkLeDpDp~V~SAAV~VICELA-----rKnPknyL~L 219 (877)
T KOG1059|consen 151 TLLNSSKPYVRKKAILLLYK----VFLKYPEALRPCF-PRLV-EKLEDPDPSVVSAAVSVICELA-----RKNPQNYLQL 219 (877)
T ss_pred HHHhcCchHHHHHHHHHHHH----HHHhhhHhHhhhH-HHHH-HhccCCCchHHHHHHHHHHHHH-----hhCCcccccc
Confidence 46788889999999988876 7999998777643 4455 4469999999999987776664 1121111123
Q ss_pred HHHHHHhcCCCC-cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhh-------hh
Q 035871 841 IHAVEINTHDPL-VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIK-------SN 912 (1127)
Q Consensus 841 i~aLl~~l~D~~-~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVR-------sn 912 (1127)
++.+.+.|.+++ -=|-||----+|+++- .+| .+-.+|++..++.... -|. .|
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtp----------lEP--------RLgKKLieplt~li~s--T~AmSLlYECvN 279 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTP----------LEP--------RLGKKLIEPITELMES--TVAMSLLYECVN 279 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccc----------cCc--------hhhhhhhhHHHHHHHh--hHHHHHHHHHHH
Confidence 344445444333 2355555555555542 122 2222232222211110 000 01
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILL 992 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll 992 (1127)
-|-|. +++.-.+ .+..-++-+++.|--.+.+.+...++=+|.|+|+++. ..+|+-+.+..|+
T Consensus 280 TVVa~-s~s~g~~----------d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k-------tHp~~Vqa~kdlI 341 (877)
T KOG1059|consen 280 TVVAV-SMSSGMS----------DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK-------THPKAVQAHKDLI 341 (877)
T ss_pred Hheee-hhccCCC----------CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh-------hCHHHHHHhHHHH
Confidence 11111 3321110 2334567778888888889999999999999999995 3468899998886
Q ss_pred HHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHH
Q 035871 993 LLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQ 1058 (1127)
Q Consensus 993 ~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q 1058 (1127)
-..-+|+.--||+.|-.=|-..-+ -.+...+++-|..-++..+. + .||+.|-.-
T Consensus 342 lrcL~DkD~SIRlrALdLl~gmVs----kkNl~eIVk~LM~~~~~ae~------t--~yrdell~~ 395 (877)
T KOG1059|consen 342 LRCLDDKDESIRLRALDLLYGMVS----KKNLMEIVKTLMKHVEKAEG------T--NYRDELLTR 395 (877)
T ss_pred HHHhccCCchhHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhccc------h--hHHHHHHHH
Confidence 666688999999998876621100 03466788888877777431 2 566766655
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.5 Score=55.22 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh
Q 035871 793 TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRH 872 (1127)
Q Consensus 793 ~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~ 872 (1127)
....++.++ +.-+.|++|.+|+-|.|++|.+ ....+.+...+.|.+.++|.++-||.+|+-..+++-+-=..
T Consensus 83 ~a~~avnt~-~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~ 154 (734)
T KOG1061|consen 83 LAILAVNTF-LKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD 154 (734)
T ss_pred HHHhhhhhh-hccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh
Confidence 334455544 3567999999999999999977 33456788889999999999999999999998888763110
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhc
Q 035871 873 CIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923 (1127)
Q Consensus 873 ~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~ 923 (1127)
-. . +..+ +..| ..++ .+++.-|-.||++||-.|...
T Consensus 155 ~~-----~---~~gl----~~~L-~~ll--~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 155 LV-----E---DSGL----VDAL-KDLL--SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred hc-----c---ccch----hHHH-HHHh--cCCCchHHHHHHHHHHHHHHh
Confidence 00 0 0112 2222 2222 234448999999999999633
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.25 E-value=4.9 Score=51.63 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=135.9
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcch-hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH-
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLK-ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID- 838 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~-~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~- 838 (1127)
..++|..+.||-...+-++.+ ..++..... ..++-.+. .+..+..|...-||.|..+.+-.... ++ ...|..
T Consensus 444 ~~l~de~~~V~lnli~~ls~~-~~v~~v~g~~~~s~slLp-~i~el~~d~~wRvr~ail~~ip~la~--q~--~~~~~~~ 517 (759)
T KOG0211|consen 444 GNLKDEDPIVRLNLIDKLSLL-EEVNDVIGISTVSNSLLP-AIVELAEDLLWRVRLAILEYIPQLAL--QL--GVEFFDE 517 (759)
T ss_pred hhcchhhHHHHHhhHHHHHHH-HhccCcccchhhhhhhhh-hhhhhccchhHHHHHHHHHHHHHHHH--hh--hhHHhhH
Confidence 456777788887776544321 111111111 11222333 23456677788899998888766542 11 123333
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
....-+..-+.|....+|-.|+.-|--++...+.... ....+.+++.. ..+|+-++|.--..++-
T Consensus 518 ~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~------------~~~~i~k~L~~---~~q~~y~~R~t~l~si~ 582 (759)
T KOG0211|consen 518 KLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA------------RLEEIPKLLAM---DLQDNYLVRMTTLFSIH 582 (759)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh------------HHHhhHHHHHH---hcCcccchhhHHHHHHH
Confidence 3334444558899999999999888888877653221 11122333221 12445689988777777
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.|...+ |.+...+..++.+...+.|..+.||-|+|+.|-.++.--.. ..-...|.+.|-.+. .|
T Consensus 583 ~la~v~-----------g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~-~d 646 (759)
T KOG0211|consen 583 ELAEVL-----------GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLS-SD 646 (759)
T ss_pred HHHHHh-----------ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhc-cC
Confidence 554221 44556788889999999999999999999999888753221 223345666655555 68
Q ss_pred CChHHHHHHHHHhcCCC
Q 035871 999 SNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~ 1015 (1127)
+|+.||.-|..|++...
T Consensus 647 ~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 647 QELDVRYRAILAFGSIE 663 (759)
T ss_pred cccchhHHHHHHHHHHH
Confidence 99999999999998544
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.14 E-value=9.4 Score=47.06 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
+|..|++..++.++..+.|++..||..|+-+|=||+-......- ..| ..+..+.-+++.|.| .||
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~-~~F-------------n~iFdvL~klsaDsd~~V~ 142 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL-VYF-------------NEIFDVLCKLSADSDQNVR 142 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc-cch-------------HHHHHHHHHHhcCCccccc
Confidence 46679999999999999999999999999999999976432110 011 112222333467888 466
Q ss_pred hhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHH
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSI 990 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~ 990 (1127)
. |+.-|-.+.+-+-.+.- +. . -++..|+-|-..+-.-|+.+|-=--.=|.-+-.-|.+.. -.+.+..++.
T Consensus 143 ~-~aeLLdRLikdIVte~~--~t---F--sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m--~~yl~~~ldG 212 (675)
T KOG0212|consen 143 G-GAELLDRLIKDIVTESA--ST---F--SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEM--ISYLPSLLDG 212 (675)
T ss_pred c-HHHHHHHHHHHhccccc--cc---c--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHH--HhcchHHHHH
Confidence 4 44444444322222110 01 1 156778777777766676655433222333332232221 1466889999
Q ss_pred HHHHHhcCCChHHHHHHHHHhc
Q 035871 991 LLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 991 Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
|.+.|. +++-.||+-+-.+|+
T Consensus 213 Lf~~Ls-D~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 213 LFNMLS-DSSDEVRTLTDTLLS 233 (675)
T ss_pred HHHHhc-CCcHHHHHHHHHHHH
Confidence 999995 578899988877654
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=89.70 E-value=5.4 Score=45.10 Aligned_cols=120 Identities=28% Similarity=0.382 Sum_probs=70.2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCC-----CCCchhH-----HHHHHH
Q 035871 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFP-----LKTDQTG-----LLVAAI 565 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~-----~~~d~~a-----l~VaaL 565 (1127)
=.+++.++.-|++|+.|..+++.+..+++..| ++...+.+...+...++ -++|.++ +..+-.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~ 196 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALR 196 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHH
Confidence 34677889999999999999999999999988 24444444444444332 1234322 222222
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhCh-hhhhhhHHHH
Q 035871 566 SCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYP-NIMSSYWQQV 644 (1127)
Q Consensus 566 ~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp-~l~~~~~~~l 644 (1127)
.|| +++|.-.+- .+..|+.-.. .....++.++++.|.+.+..|+ ..+.+||..+
T Consensus 197 ~cl----~s~~~fa~~--------------------~~p~LleKL~-s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 197 NCL----SSTPLFAPF--------------------AFPLLLEKLD-STSPSVKLDSLQTLKACIENYGADSLSPHWSTI 251 (262)
T ss_pred HHh----cCcHhhHHH--------------------HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 333 222222110 1122222111 1235699999999999998885 4567788766
Q ss_pred HHHH
Q 035871 645 STIV 648 (1127)
Q Consensus 645 ~~vl 648 (1127)
-+.+
T Consensus 252 w~~l 255 (262)
T PF14500_consen 252 WNAL 255 (262)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.84 Score=53.07 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=91.8
Q ss_pred HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccc
Q 035871 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 846 ~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~ 925 (1127)
.-+++++..||.+|||-+|-...--.... ...+-...+.+|+..+. .++.+.||.+|-.|++.+.|.-.
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q---------e~v~E~~~L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQ---------EQVIELGALSKLLKILS--SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHH---------HHHHHcccHHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc
Confidence 36799999999999999996654211000 00111224566666432 55666899999999999987655
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHH
Q 035871 926 YTSSSHPASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKI 1003 (1127)
Q Consensus 926 ~~~~~~~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKV 1003 (1127)
+-.. ++ ..-.....|..+++. .++|.+--|..=++.+......-.. .-....|+.....+..+-.+.+
T Consensus 200 ~g~~------~f--l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~ 269 (342)
T KOG2160|consen 200 PGQD------EF--LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEV 269 (342)
T ss_pred HHHH------HH--HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhh
Confidence 4110 00 011125678888887 4678888888888888654322111 2234456666666666677778
Q ss_pred HHHHHHHhcC
Q 035871 1004 RIQAAAALAV 1013 (1127)
Q Consensus 1004 Ri~AA~AL~~ 1013 (1127)
+-.|-.++-.
T Consensus 270 ~e~~l~~~l~ 279 (342)
T KOG2160|consen 270 NEAALTALLS 279 (342)
T ss_pred hHHHHHHHHH
Confidence 8888877753
|
|
| >PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.35 Score=35.85 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.2
Q ss_pred chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 959 VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 959 VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
||+.|++|||+++. +..++.|+.++.|
T Consensus 1 VR~~Aa~aLg~igd------------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD------------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------------HHHHHHHHHHhcC
Confidence 79999999999995 4588899998854
|
Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.4 Score=52.23 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=72.7
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDK 839 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ 839 (1127)
.-++|++|++|+.|.+-.+.|+-.. ..++++..+ ..+.+|++|.||..|+-.+..+- .-+.+..+..
T Consensus 93 kD~~d~np~iR~lAlrtm~~l~v~~-------i~ey~~~Pl-~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g---- 160 (734)
T KOG1061|consen 93 KDCEDPNPLIRALALRTMGCLRVDK-------ITEYLCDPL-LKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG---- 160 (734)
T ss_pred ccCCCCCHHHHHHHhhceeeEeehH-------HHHHHHHHH-HHhccCCChhHHHHHHHHHHHhhcCChhhccccc----
Confidence 4467889999999999988876432 235555554 47789999999999987777764 3445566654
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
+++.|-..+.|+++-|=.+|--||.+|-+.
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 445555556799999999999999998874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.44 E-value=7.9 Score=51.19 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh----cccccccchHHHHHHHHHHHHhcCC-CCcchhchHHHHHHhhh
Q 035871 793 TQEFIISSLIDSALHDDVASVRSAACRAIGVIS----CFPQVSQSAEIIDKFIHAVEINTHD-PLVSVRITASWALANIC 867 (1127)
Q Consensus 793 ~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv----~~p~L~~d~~fv~~ai~aLl~~l~D-~~~~VRikAAWALGNL~ 867 (1127)
+-+.|+. .+..+..|.++.||++|.++|-.+. -+|.. +...|++=..+.|-..+.| ....||+-=|--||.+.
T Consensus 459 ~LDRVlP-Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~-daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 459 KLDRVLP-YFVHLLMDSEADVRATALETLTELLALVRDIPPS-DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHhhhHH-HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc-cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 3456666 5568899999999999999997663 33333 2345677777777777888 77788888888888888
Q ss_pred hhhhh----------c-ccccCCCCCCcc-cccH--HHHHHHHH-HHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCC
Q 035871 868 DSIRH----------C-IDDFAFKPSIDS-NANS--HLMASLTE-SALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSH 931 (1127)
Q Consensus 868 d~L~~----------~-~~~~~~~~~~~~-~is~--~lL~~L~e-~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~ 931 (1127)
..... + +...+.++-..+ .... +.|...++ ....++.|++ -||..=..+++-|..|+-.+-..
T Consensus 537 ~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN- 615 (1431)
T KOG1240|consen 537 KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN- 615 (1431)
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc-
Confidence 75321 0 111111100001 1111 11222222 2333456777 79988888888888776554321
Q ss_pred CCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccc---ccccCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 035871 932 PASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET---INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAA 1008 (1127)
Q Consensus 932 ~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~---i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA 1008 (1127)
+.++.-|+..|+|.+ |+-=.| .|.+-+ ++.+...-.+-+.|-|.+.|+|...| |=++|-
T Consensus 616 ----------D~iLshLiTfLNDkD----w~LR~a---FfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL 677 (1431)
T KOG1240|consen 616 ----------DVILSHLITFLNDKD----WRLRGA---FFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSAL 677 (1431)
T ss_pred ----------cchHHHHHHHhcCcc----HHHHHH---HHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHH
Confidence 234566777777764 543333 344433 44554444577889999999887776 888888
Q ss_pred HHhc
Q 035871 1009 AALA 1012 (1127)
Q Consensus 1009 ~AL~ 1012 (1127)
.+|.
T Consensus 678 ~~ls 681 (1431)
T KOG1240|consen 678 GSLS 681 (1431)
T ss_pred HHHH
Confidence 8875
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=78 Score=39.57 Aligned_cols=220 Identities=17% Similarity=0.148 Sum_probs=125.4
Q ss_pred HHccCChhHHHHHHHHHhccchhH----HhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHH-
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSV----FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEI- 836 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~----f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~f- 836 (1127)
-+.+.+|+.|....+=+..+.+-. +..+| .+...| +..+.|+++.||--+-.+||.+- -++++++.+
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~-----~~ldGL-f~~LsD~s~eVr~~~~t~l~~fL--~eI~s~P~s~ 246 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP-----SLLDGL-FNMLSDSSDEVRTLTDTLLSEFL--AEIRSSPSSM 246 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch-----HHHHHH-HHHhcCCcHHHHHHHHHHHHHHH--HHHhcCcccc
Confidence 345567888888887776654322 22222 233433 46789999999999999998873 233444433
Q ss_pred -HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-h-hhhhH
Q 035871 837 -IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-K-IKSNA 913 (1127)
Q Consensus 837 -v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-K-VRsnA 913 (1127)
..+.++.+...+.-+++..+.+|- --|-.-..- . +...-+ .+..++.+.|....|++ + ++.-|
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al---~Wi~efV~i-------~---g~~~l~-~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKAL---TWIQEFVKI-------P---GRDLLL-YLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHH---HHHHHHhcC-------C---Ccchhh-hhhhhhhhcccCCCCCccccHHHHH
Confidence 356677777777788888887773 222221110 0 001000 12334444455566666 3 55554
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHH
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLL 993 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ 993 (1127)
.--=|.++.....+... ++ .-...+|+.|.+-+.+.++.-|.-+-.=+--++.+..-.+. .-.+++|..|++
T Consensus 313 ~~~n~~l~~l~s~~~~~-----~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~--~h~~~if~tLL~ 384 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLK-----EE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL--VHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHhhhhhc-----cc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh--hhccHHHHHHHH
Confidence 44444455444433221 11 11347889999999999888887665555555443211111 235779999999
Q ss_pred HHhcCCChHHHHHHHHHhc
Q 035871 994 LLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 994 ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.|.| +.-.|=..+-.-|+
T Consensus 385 tLsd-~sd~vvl~~L~lla 402 (675)
T KOG0212|consen 385 TLSD-RSDEVVLLALSLLA 402 (675)
T ss_pred hhcC-chhHHHHHHHHHHH
Confidence 9965 43446566655554
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.15 E-value=32 Score=41.89 Aligned_cols=189 Identities=19% Similarity=0.235 Sum_probs=113.1
Q ss_pred HHHHHhhhhcCCCCchHhHHHH-HHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHH
Q 035871 603 LFTLLQCSERLASPAICFESLQ-ALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVT 681 (1127)
Q Consensus 603 L~~Ll~~~~~~~~~~vRlEAlQ-vL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l 681 (1127)
+..++.-..+..++.-|-||++ +...++.+-+++-..|+.++...+.++|.+...+ -...
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~-------------------~~k~ 348 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDE-------------------IIKK 348 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhh-------------------HHHH
Confidence 3344444444566778889998 6666778888888888888877788787542211 1223
Q ss_pred HHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHH
Q 035871 682 AAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPL 761 (1127)
Q Consensus 682 ~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~ 761 (1127)
-|.++|.|++++- ..+++| ++ .+.|.+.| .
T Consensus 349 laLrvL~~ml~~Q----------~~~l~D----------------------st-----------------E~ai~K~L-e 378 (516)
T KOG2956|consen 349 LALRVLREMLTNQ----------PARLFD----------------------ST-----------------EIAICKVL-E 378 (516)
T ss_pred HHHHHHHHHHHhc----------hHhhhc----------------------hH-----------------HHHHHHHH-H
Confidence 4788999887741 123433 11 23455555 4
Q ss_pred HHccCCh-hHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc--hHHHH
Q 035871 762 ILQHISS-MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS--AEIID 838 (1127)
Q Consensus 762 ~l~d~~~-~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d--~~fv~ 838 (1127)
+-.|++. .+|.++-+|+-.+.+ .+|... .-+|..+|+. .|+.-. .+++.-+-. +|..+..+ ...+.
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las----~~P~~~-I~~i~~~Ilt--~D~~~~--~~~iKm~Tk--l~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLAS----HLPLQC-IVNISPLILT--ADEPRA--VAVIKMLTK--LFERLSAEELLNLLP 447 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHh----hCchhH-HHHHhhHHhc--CcchHH--HHHHHHHHH--HHhhcCHHHHHHhhh
Confidence 5567765 556666665544321 244332 2334445544 333322 233323322 33344433 22367
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
+++++++.+-+..+..||-.|.+-|--|-..++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 889999999999999999999999998888776
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.86 E-value=9.7 Score=51.46 Aligned_cols=235 Identities=19% Similarity=0.244 Sum_probs=128.3
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhcc-chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHH---HHHHhhh
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGI-TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA---CRAIGVI 824 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~I-gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA---~RALGvl 824 (1127)
.|.++|++..|+. +.+..=-||.++|-||..+ -+..|+..-+.--+.-. + ++..++|=-..||-|| +++||.+
T Consensus 1035 ~y~neIl~eLL~~-lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~-~-~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1035 EYLNEILDELLVN-LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE-A-AFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666653 3444567999999999985 33344444332223222 2 3466788778899987 5566666
Q ss_pred h---cccccc-cchHHHHHHHHHHHH--hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHH-
Q 035871 825 S---CFPQVS-QSAEIIDKFIHAVEI--NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTE- 897 (1127)
Q Consensus 825 v---~~p~L~-~d~~fv~~ai~aLl~--~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e- 897 (1127)
+ +-+.-. ....++..+.+.|+. .+ .+...||. .+++-+-|-....... +-| .-+.++..|++
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~---~si~tl~dl~Kssg~~--lkP-----~~~~LIp~ll~~ 1180 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRR---FSIGTLMDLAKSSGKE--LKP-----HFPKLIPLLLNA 1180 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHH---HHHHHHHHHHHhchhh--hcc-----hhhHHHHHHHHH
Confidence 4 222111 223445555566654 23 44556774 4555555432221110 111 11122222222
Q ss_pred -----------HHHhhcc----CCchhhhhHHH------HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC-
Q 035871 898 -----------SALNLTK----DGDKIKSNAVR------GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG- 955 (1127)
Q Consensus 898 -----------~aL~a~~----D~DKVRsnAvR------ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~- 955 (1127)
.++++.+ --|..|.+|++ +++.+++.+ |...+|++++.+++.++.+
T Consensus 1181 ~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~i------------D~~vLeelip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1181 YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYI------------DISVLEELIPRLTELVRGSV 1248 (1702)
T ss_pred ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHhccC
Confidence 1222211 11235666654 344443322 3345899999999999764
Q ss_pred CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 956 NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+---|--++.-+.-+-.. +...-.|.....+.+|+.-++| +|--||+.-|.|.|
T Consensus 1249 gl~Tkvg~A~fI~~L~~r--~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG 1302 (1702)
T KOG0915|consen 1249 GLGTKVGCASFISLLVQR--LGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMG 1302 (1702)
T ss_pred CCCcchhHHHHHHHHHHH--hccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHH
Confidence 233333444444333222 2222347889999999999976 99999999999997
|
|
| >PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.48 Score=35.12 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=22.1
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT 954 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~ 954 (1127)
||..|+++||+++ + +++++.|+++++|
T Consensus 1 VR~~Aa~aLg~ig---------------d----~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIG---------------D----PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG----------------S----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC---------------C----HHHHHHHHHHhcC
Confidence 7999999999994 3 6788899888753
|
Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.8 Score=52.94 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.+.+.|.|+++.+|+.|.+.|++|--..-. | +.. .-|-.+..|..|.||-.|+-|+-.+- +-|++..
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRvp~Ia--P----I~l--lAIk~~~~D~s~yVRk~AA~AIpKLY-----sLd~e~k 178 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRVPMIA--P----IML--LAIKKAVTDPSPYVRKTAAHAIPKLY-----SLDPEQK 178 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcchhhHH--H----HHH--HHHHHHhcCCcHHHHHHHHHhhHHHh-----cCChhhH
Confidence 355789999999999999999998644311 0 111 12345678999999999999997652 1233333
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
...++.|...|.|.++.|=--|..|.-.+|-.
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 44556666678999999999999999999864
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=87.53 E-value=6 Score=45.11 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=68.3
Q ss_pred HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccc
Q 035871 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDD 876 (1127)
Q Consensus 797 ~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~ 876 (1127)
++..+|.-+....++.||..|.+.||-++++-. .+....+.-+...++..+..||+.|.-++-.+.-.- ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~--g~~~ 99 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH--GIDI 99 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--Cchh
Confidence 444566677899999999999999999975332 233444445555555558899998877765544321 1111
Q ss_pred cCCCCCCc--ccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhh
Q 035871 877 FAFKPSID--SNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLS 921 (1127)
Q Consensus 877 ~~~~~~~~--~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl 921 (1127)
++.... +.....-+.+++...+ ..++++|+.-|+.++.+|+
T Consensus 100 --~~~~~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 100 --FDSESDNDESVDSKSLLKILTKFL--DSENPELQAIAVEGLCKLL 142 (298)
T ss_pred --ccchhccCccchHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Confidence 111000 1122222333333333 2346689999999999986
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=86.62 E-value=4 Score=50.63 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred HHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 895 LTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 895 L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
-++..|.+++..+|+|.=|+.-+..+. . .++.+.|.+|+++++..+|.+..||-.|..+|..+.++
T Consensus 24 ~y~~il~~~kg~~k~K~Laaq~I~kff---k----------~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~- 89 (556)
T PF05918_consen 24 DYKEILDGVKGSPKEKRLAAQFIPKFF---K----------HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD- 89 (556)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHH---C----------C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHH---h----------hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-
Confidence 344456678888899987776666553 2 23457899999999999999999999999999999875
Q ss_pred cccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHH
Q 035871 975 TINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVA 1054 (1127)
Q Consensus 975 ~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~ 1054 (1127)
...|...|...|+++|+. .+...+...-.||.. .|-..-..+..+++.-++...+ .| +.
T Consensus 90 -----~~~~v~kvaDvL~QlL~t-dd~~E~~~v~~sL~~-----ll~~d~k~tL~~lf~~i~~~~~---~d-------e~ 148 (556)
T PF05918_consen 90 -----NPEHVSKVADVLVQLLQT-DDPVELDAVKNSLMS-----LLKQDPKGTLTGLFSQIESSKS---GD-------EQ 148 (556)
T ss_dssp -------T-HHHHHHHHHHHTT----HHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHH---H---S--------HH
T ss_pred -----HHHHHhHHHHHHHHHHhc-ccHHHHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHhccc---Cc-------hH
Confidence 346899999999999975 445677777777752 2333344566666666653111 11 45
Q ss_pred HHHHHHHHHHHHHHH
Q 035871 1055 LQKQKSSFLEEWFKV 1069 (1127)
Q Consensus 1055 L~~Q~~~~l~~~l~~ 1069 (1127)
.++.+-.||-+-|.-
T Consensus 149 ~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 149 VRERALKFLREKLKP 163 (556)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666677554443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=8.8 Score=46.65 Aligned_cols=106 Identities=9% Similarity=0.004 Sum_probs=74.3
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHH---HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE---FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~---~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
....|++..+|..||+||+++-+. .|.+.+. .++..++.++.+|.+..|--.|..+|-++.=--+-.+=..|.
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~----~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASG----APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhcc----CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 345688899999999999996432 4665443 355567889999999999999999998764111111112223
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSI 870 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L 870 (1127)
-++...+-...+|.+..+|..|-..+|-+.---
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 344455555678999999999999999887543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=85.95 E-value=7.8 Score=48.17 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=48.3
Q ss_pred HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHH
Q 035871 785 VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALA 864 (1127)
Q Consensus 785 ~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALG 864 (1127)
.|..+|. .++..|.++ +.+|+|+|..||..|+|.|..++ +++..++.+.++.|...|.-.+...+.-.-+||-
T Consensus 49 ffk~FP~-l~~~Ai~a~-~DLcEDed~~iR~~aik~lp~~c-----k~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 49 FFKHFPD-LQEEAINAQ-LDLCEDEDVQIRKQAIKGLPQLC-----KDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHCC-GG-GHHHHHHHH-HHHHT-SSHHHHHHHHHHGGGG-------T--T-HHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhhChh-hHHHHHHHH-HHHHhcccHHHHHHHHHhHHHHH-----HhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444543 334445544 47899999999999999999885 3457788999999988887666666666667764
Q ss_pred hhh
Q 035871 865 NIC 867 (1127)
Q Consensus 865 NL~ 867 (1127)
.+-
T Consensus 122 ~ll 124 (556)
T PF05918_consen 122 SLL 124 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=85.25 E-value=0.72 Score=36.89 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 942 E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
..+|+.|++.+.+++.+||=+||+||+|+-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 347889999999999999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.74 E-value=42 Score=44.95 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=76.0
Q ss_pred HHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchh-HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 752 SEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKE-TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 752 ~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~-~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
+++|=.||+.-|.|.+..+|++=-+-+.++.- | +... .-++++. |+..++.|.++.|=..|.++|-.++.-.-+
T Consensus 615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi--~--VG~rs~seyllP-Ll~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSI--F--VGWRSVSEYLLP-LLQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred ccchHHHHHHHhcCccHHHHHHHHhhccceEE--E--EeeeeHHHHHHH-HHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 56666799999999999999999888876421 1 1111 2356665 677889999999999999999888754444
Q ss_pred ccchHHHHHHHHHHHHhcCCCCcchhchHHH
Q 035871 831 SQSAEIIDKFIHAVEINTHDPLVSVRITASW 861 (1127)
Q Consensus 831 ~~d~~fv~~ai~aLl~~l~D~~~~VRikAAW 861 (1127)
+. ..+-++++.++-.+-.||.=||..+.=
T Consensus 690 ~K--~~v~~i~~~v~PlL~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 690 RK--PAVKDILQDVLPLLCHPNLWIRRAVLG 718 (1431)
T ss_pred ch--HHHHHHHHhhhhheeCchHHHHHHHHH
Confidence 44 235666777777788999999976543
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.72 E-value=34 Score=43.40 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=71.0
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchh------HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSS------VFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~------~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
++..+|..++.++|++-.++.||+-.+ ..++.|...+. ++. ++..-+.|.+|.+|..|...+-.+...|+.-
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~-Lv~-ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND-LVG-LLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH-HHH-HHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 444556666789999999999997432 33333332233 333 4456678999999999999998886555432
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
.. -...++.-+...+.|.+.-||-+|.--++.+
T Consensus 381 ~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 11 0245566666777999999999998555544
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.69 E-value=19 Score=46.02 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=44.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
+...=|+.-||+||.-||..+. .++..-.......+...+.|++..||-+|.++|-++.++
T Consensus 473 NRviLEn~ivRaaAv~alaKfg-----~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFG-----AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHh-----cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 3344478899999999999996 122211233445555668999999999999999999954
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.84 E-value=38 Score=43.54 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=64.9
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~ 882 (1127)
-.+++|.|+.+|+.|.|+|..| |= ++.+--+.-|+-+...|+++-||-.||-|+-.+=+. ++
T Consensus 114 Qk~L~DpN~LiRasALRvlSsI------Rv-p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL----------d~- 175 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSI------RV-PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL----------DP- 175 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhc------ch-hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC----------Ch-
Confidence 3567999999999999999877 21 222333445666678999999999999998877652 11
Q ss_pred CcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 883 IDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 883 ~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
+.-+ .|.-+++. +..|++ +|-+.||-|.-.+
T Consensus 176 ---e~k~-qL~e~I~~---LLaD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 176 ---EQKD-QLEEVIKK---LLADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred ---hhHH-HHHHHHHH---HhcCCCCcchhHHHHHHHHh
Confidence 1112 23334443 357777 8999999998766
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.59 E-value=5.9 Score=46.31 Aligned_cols=156 Identities=15% Similarity=0.070 Sum_probs=92.6
Q ss_pred hhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHH-----HHHhhhccCCCHhHHHHHHHHHhh
Q 035871 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIIS-----SLIDSALHDDVASVRSAACRAIGV 823 (1127)
Q Consensus 749 ~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~-----~Lll~~~~De~~~VRaAA~RALGv 823 (1127)
..|..++ ..++++++.||+.|.+-+|..- ..=| .-|+.++. .|+..+..|.+-.||..|.-|++.
T Consensus 124 ggl~~ll-----~~l~~~~~~lR~~Aa~Vigt~~----qNNP-~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Aiss 193 (342)
T KOG2160|consen 124 GGLVPLL-----GYLENSDAELRELAARVIGTAV----QNNP-KSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISS 193 (342)
T ss_pred cCHHHHH-----HHhcCCcHHHHHHHHHHHHHHH----hcCH-HHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 4565433 3678999999999999999842 2222 23444442 355555677777899999999999
Q ss_pred hhcccccccchHHHHHHHHHHHHhcCC--CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 824 ISCFPQVSQSAEIIDKFIHAVEINTHD--PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 824 lv~~p~L~~d~~fv~~ai~aLl~~l~D--~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
++.--.-+.+.-+.-.=...|...+++ .+...+.||..-++++...-.... +.++.......++...
T Consensus 194 LIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~----------d~~~~~~f~~~~~~l~- 262 (342)
T KOG2160|consen 194 LIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE----------DIASSLGFQRVLENLI- 262 (342)
T ss_pred HHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh----------hHHHHhhhhHHHHHHh-
Confidence 872111111111111113455556666 666777899999998887533211 1233332333333211
Q ss_pred hccCCchhhhhHHHHHhhhhhcccc
Q 035871 902 LTKDGDKIKSNAVRGLGNLSRFVKY 926 (1127)
Q Consensus 902 a~~D~DKVRsnAvRALGnLl~~l~~ 926 (1127)
..++..++.+|++++=.++.....
T Consensus 263 -~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 263 -SSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred -hccchhhhHHHHHHHHHHHHHHhh
Confidence 345557999988888777654443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.51 E-value=11 Score=48.89 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=125.5
Q ss_pred HhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHh
Q 035871 786 FFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALAN 865 (1127)
Q Consensus 786 f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGN 865 (1127)
|+.||+...--.++.-+...+.|+++-=|..|.+.+.....-+.......|.+...-.+-....|.|.+|=..|+--|+-
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 44444433333333333445678999999999999988764333222222223333333345789999999999999999
Q ss_pred hhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh---hhHHHHHhhhhhccccCCCCCCCCCCChhHH
Q 035871 866 ICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK---SNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941 (1127)
Q Consensus 866 L~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR---snAvRALGnLl~~l~~~~~~~~~~~g~~~~~ 941 (1127)
|+..|+..- .+++. .+-+.++.+ ++|+- .+| ..++++.||.. -.
T Consensus 322 ia~~lr~~~-----~~~~~-~v~p~lld~--------lkekk~~l~d~l~~~~d~~~ns~------------------~l 369 (815)
T KOG1820|consen 322 IAKKLRPLF-----RKYAK-NVFPSLLDR--------LKEKKSELRDALLKALDAILNST------------------PL 369 (815)
T ss_pred HHHhcchhh-----HHHHH-hhcchHHHH--------hhhccHHHHHHHHHHHHHHHhcc------------------cH
Confidence 999887542 22111 111222333 35544 343 45555555521 25
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 942 E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
++++...+..+.++|+++|-----.++..++...-...+.+-...+++.++..+.| .+-.||..|..+++..
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D-~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIND-TDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccC-CcHHHHHHHHHHHHHH
Confidence 78888999999999999998777778887765432223345567889999999966 5567999999999844
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.82 E-value=70 Score=40.49 Aligned_cols=188 Identities=24% Similarity=0.251 Sum_probs=99.8
Q ss_pred hhhhhhhHHHHHHHHH---HHHhhCCc-cccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCC
Q 035871 387 SVQSSKVRVAALVCLQ---DLCRADPK-SFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGP 462 (1127)
Q Consensus 387 r~~~skVR~~AL~~L~---al~k~~~K-~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gs 462 (1127)
++.+.++|.+|+.|+. .+.+..+- .++-| -.+=|.... .+-..+-|++||++.-|..++..+..++.++
T Consensus 191 ~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l--~~L~d~~v~-----~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 191 MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLL--GLLKDKGVN-----IRCVVTRLLKDPDFSERLRSLECLVPYLRKS 263 (678)
T ss_pred HhhhHHHHHHHHHHhhccceeeecCchhHHHHH--HHHhccccc-----hhhhhhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence 4457799999999998 55554442 22211 112222221 2346688999999999999999999999997
Q ss_pred ch--------hhhhh-----hhhccccCCcccccchHHHH------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhH
Q 035871 463 ST--------VFLQV-----AEYKESIKCGSFMPLSTSYG------HIIMQLHNGIIYLIQRETHDRLLASLFKILMPLI 523 (1127)
Q Consensus 463 k~--------~llq~-----AE~~es~~~~SFTsfS~tLg------~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LV 523 (1127)
.. .|.-+ ++|..- ..=|.|+=.++. -.+.++--.|..--..|....+++.+|||-+.|-
T Consensus 264 ~~~d~l~~~~~~~dmgd~~i~q~~~i--~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~ 341 (678)
T KOG1293|consen 264 FNYDPLPWWFIFFDMGDSLIVQYNCI--VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLA 341 (678)
T ss_pred ccccccccceeeccCchHHHHHHhhh--eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHh
Confidence 22 12111 222110 112233222221 1112222222222222344557889999999998
Q ss_pred hcccCCCCC------------CCchHHHHHH-----HHHHHhhcCCCCCchhHHHHHHHHHHHHH------HhcCCChhH
Q 035871 524 SCTPYSRMP------------GELMPNLIIS-----LRARIEEGFPLKTDQTGLLVAAISCLTAA------LSTSPAPVQ 580 (1127)
Q Consensus 524 q~TPY~RL~------------~~Ll~~vv~~-----l~~~i~~~~~~~~d~~al~VaaL~cL~av------ls~~~~~~e 580 (1127)
+.-|=.|+= ++.--..-++ +...+.+. ..++|+. .+.|++-||-.+ +.+.+....
T Consensus 342 a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~-~~~kd~~-~~aaa~l~~~s~srsV~aL~tg~~~~d 419 (678)
T KOG1293|consen 342 ASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL-PPIKDHD-FVAAALLCLKSFSRSVSALRTGLKRND 419 (678)
T ss_pred hcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc-cccccHH-HHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 888755431 1110000001 11122222 2346665 556777777664 567776666
Q ss_pred HHHHH
Q 035871 581 VKQMF 585 (1127)
Q Consensus 581 V~~~L 585 (1127)
|.+.|
T Consensus 420 v~~pl 424 (678)
T KOG1293|consen 420 VAQPL 424 (678)
T ss_pred hHHHH
Confidence 65533
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=81.11 E-value=1.1e+02 Score=34.92 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=88.5
Q ss_pred HhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHH
Q 035871 503 IQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVK 582 (1127)
Q Consensus 503 L~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~ 582 (1127)
|-+ .+..+....+.+|+.++...|-++|...=+.-+++-...++ . |+..+ ..++..+.+++.......+..
T Consensus 8 Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl----~---D~~~~-~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 8 LTS-EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL----D---DHACV-QPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hCC-CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh----c---cHhhH-HHHHHHHHHHHhCcCCChhhH
Confidence 445 36668889999999999999988888766655555443333 2 33333 355777777776555444332
Q ss_pred HHHHHhhhcCCCCCCCcchhHHHHHhhh-hcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcc
Q 035871 583 QMFLEEISAGSVEVDKRSGVLFTLLQCS-ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPA 661 (1127)
Q Consensus 583 ~~L~~e~ssg~~~~~~~s~~L~~Ll~~~-~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~ 661 (1127)
.. ++..+++.- -+....+.|..++++|..+..+|..-+...-.. .+..+++...-|-
T Consensus 79 ~~-----------------i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~---fv~~~i~~~~gEk-- 136 (262)
T PF14500_consen 79 VK-----------------ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDD---FVYGFIQLIDGEK-- 136 (262)
T ss_pred HH-----------------HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhH---HHHHHHHHhccCC--
Confidence 21 233333221 123345889999999999999887666433333 3333333332221
Q ss_pred cccCCCCCCCccccchhHHHHHHHHHHHHHH
Q 035871 662 KAWKGHVGNTAGFIGEKVVTAAIKVLDESLR 692 (1127)
Q Consensus 662 ~~~~g~~~~~~~l~g~~~~l~A~klLdE~lr 692 (1127)
+=||++.+.+++..+++
T Consensus 137 --------------DPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 137 --------------DPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --------------CHHHHHHHHHHHHHHHH
Confidence 12899888888776544
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=80.80 E-value=1.1e+02 Score=36.40 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=41.2
Q ss_pred hHHHHHc--cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHH
Q 035871 758 HMPLILQ--HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAI 821 (1127)
Q Consensus 758 ~Lp~~l~--d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RAL 821 (1127)
++|.+.. ...|.+|+.||+.+...-+ .+|++.-..++..+ ...+.+++..|+.-|+.|+
T Consensus 310 v~peL~~~~~~~piLka~aik~~~~Fr~----~l~~~~l~~~~~~l-~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 310 VLPELQPDVNSHPILKADAIKFLYTFRN----QLPKEQLLQIFPLL-VNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TCHHHH-SS-S-HHHHHHHHHHHHHHGG----GS-HHHHHHHHHHH-HHHTTSS-HHHHHHHHHHH
T ss_pred hHHHhcccCCCCcchHHHHHHHHHHHHh----hCCHHHHHHHHHHH-HHHhCCCCcchhhhhhhhC
Confidence 4565542 3348999999999987544 36776666777744 5778999999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-12
Identities = 101/625 (16%), Positives = 190/625 (30%), Gaps = 168/625 (26%)
Query: 536 MPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVE 595
MP I+S + I+ K +G L L L + ++ Q F+EE+
Sbjct: 41 MPKSILS-KEEIDHIIMSKDAVSGTLR-----LFWTLLSKQE--EMVQKFVEEV------ 86
Query: 596 VDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTI--VFKILK 653
+ L + ++ P++ R +N + + Y VS + K+ +
Sbjct: 87 LRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQ 142
Query: 654 AASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFK------G----TEDL 703
A PAK G G G K A L ++ FK E +
Sbjct: 143 ALLELRPAKNVLID-G-VLGS-G-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 704 LD--DKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMP- 760
L+ KLL + R + S+ L I+ + + K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRL---------LKSKPYEN 245
Query: 761 --LILQHISS-------------MV--RTAAVTCFAGITSSVFFSLLKETQEFIIS---S 800
L+L ++ + ++ R VT F ++ SL + S
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 801 LIDSALHDDVASVRSAAC----RAIGVISC-----------FPQVSQSAEIIDKFIHAVE 845
L+ L + R + +I+ + V+ DK +E
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-----CDKLTTIIE 360
Query: 846 --INTHDPLVSVRITASWALANICDSIRHCIDDFA-FKPSIDSNANSHLMASL-TESALN 901
+N +P R D + F P ++ + L++ + +
Sbjct: 361 SSLNVLEP----------------AEYRKMFDRLSVFPP--SAHIPTILLSLIWFDV--- 399
Query: 902 LTKDGDKIKSNAVRGLGNLS----RFVKYTSSSH------PASLGDSRWLER-IVQA--L 948
+ D + V L S + + T S L + L R IV +
Sbjct: 400 IKSDVMVV----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 949 VSCVTTGNVKVQWNVCRALSNLFLN------ETINLEDMDWAPSVFSILLLLLRDSSNF- 1001
+ ++ + L F + + I + ++F ++ L R F
Sbjct: 456 PKTFDSDDLIPPY-----LDQYFYSHIGHHLKNIEHPERM---TLFRMVFLDFR----FL 503
Query: 1002 --KIRIQAAAALAVPSSVSD-------YGKSFSD-------VVQGLEHILENLGADHLSA 1045
KIR + A S+ + Y D +V + L + + + +
Sbjct: 504 EQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 1046 PSSFKYRVALQKQKSSFLEEWFKVL 1070
+ R+AL + + EE K +
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 71/487 (14%), Positives = 137/487 (28%), Gaps = 153/487 (31%)
Query: 744 FQSGSEQWS--EMIEKHMP-----LILQHISSMVRTAAVTCFAGITSSVF---------- 786
F++G Q+ +++ + + M ++ ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-------LSKEEIDHIIMSKDAV 61
Query: 787 ------FSLLKETQEFIISSLIDSALHDD---VASVRSAACRA-----IGVISCFPQVSQ 832
F L QE ++ ++ L + + S R I ++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 833 SAEIIDKFIHAVEINTHDPLVSVRITA-------------------SWALANICDS--IR 871
++ K+ ++ P + +R +W ++C S ++
Sbjct: 122 DNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 872 HCIDDFAF--------KPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRF 923
+D F P L+ + + + + IK L R
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 924 VKYTSSSHPASLG--DSRWLERIVQAL-VSC---VTTGNVKVQWNVCRALSNLFLNETIN 977
+K S + L + + A +SC +TT V LS I+
Sbjct: 238 LK--SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK----QVTDFLSAATTTH-IS 290
Query: 978 LEDMDWA---PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVV------ 1028
L+ V S+LL L D + + P +S +S D +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNW 347
Query: 1029 -----QGLEHILENLGADHLSAPSSFK--YR----------------------------- 1052
L I+E + L P+ ++ +
Sbjct: 348 KHVNCDKLTTIIE-SSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 1053 -VALQKQKSSFLEEWFKVLCSSLG----ESTTHLENENNSVGNQKKEMISKAI-RSLIEV 1106
V + K S +E+ K S+ E LENE A+ RS+++
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE-------------YALHRSIVDH 452
Query: 1107 YEGRKQF 1113
Y K F
Sbjct: 453 YNIPKTF 459
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 7e-04
Identities = 64/441 (14%), Positives = 126/441 (28%), Gaps = 117/441 (26%)
Query: 13 WRTAFLTLRDETSSLSGCPSVSQLLHDVLFSNLHSLVYAASDLP--PHEVTSDLLFLLEL 70
W L L++ S + Q L + N S +S++ H + ++L LL+
Sbjct: 186 W----LNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 71 VSNAPPRDGEDSTLTFTHTCHLVHGILQRV-------SFEFNSSSFNLILNSFQSIINFF 123
+ E+ L +L V +F + L+ F+ + +F
Sbjct: 241 ------KPYENCLL-----------VLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFL 281
Query: 124 LVKAATKSSATRFKPVMQCLETTRCLTNVYQGKFS--PLEIVHLVKFVLHAL-------E 174
T S + E L + P E++ L ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDG 340
Query: 175 CSHAEFVCLYNASATQRSTAESGKRL------HRYSSLWEVQALSITMLGEAFSRAGSSL 228
+ + N S L + LS+ F + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------DRLSV------F-PPSAHI 387
Query: 229 PVD----IW-QSTIEVLRKVIDVIASKSVLGEDSILSSRFYSSLLNCLHVVLTDPKISLS 283
P IW + V++ + S++ + S + + + K+ L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTIS-----IPSIYLELKVKLE 440
Query: 284 D----HVSGFVTALRL---FFVYGLTSSP--QFTFPAVGH--KEVSPNLPSEE-PK---- 327
+ H S V + F L Q+ + +GH K +
Sbjct: 441 NEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 328 ------KIDH--TPYRPPH--------LRK-KDRLNIKQSKPQDHRIFSDDDSFTMNFMS 370
KI H T + L+ K I + P+ R+ + ++F+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNA----ILDFLP 553
Query: 371 SDSDYSDSDGSIKDTDSVQSS 391
+ K TD ++ +
Sbjct: 554 KIEENLICS---KYTDLLRIA 571
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 9e-12
Identities = 51/311 (16%), Positives = 97/311 (31%), Gaps = 26/311 (8%)
Query: 733 SSEDIKESAKAFQSGSEQWSEMIEKHMPLI--LQHISSMVRTAAVTCFAGITSSVFFSLL 790
++D ++ S + +E ++ + + + A + S +
Sbjct: 37 GTDDDDKAMADIGSNQGTVNWSVE---DIVKGINSNNLESQLQATQAARKLLSREKQPPI 93
Query: 791 KE-TQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH 849
+ +I + D + ++ + A+ I+ A + I A
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 850 DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKI 909
P + A WAL NI D I A L+A L L+
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLV-----IKHGAIDPLLALLAVPDLSTLA--CGY 206
Query: 910 KSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969
N L NL R + +E+I+ LV + + +V + C A+S
Sbjct: 207 LRNLTWTLSNLCR--------NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258
Query: 970 LFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF---SD 1026
L +E + V L+ LL ++ I A A+ + +D +
Sbjct: 259 LTDGPNERIEMVVKK-GVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316
Query: 1027 VVQGLEHILEN 1037
+ +L N
Sbjct: 317 ALAVFPSLLTN 327
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 43/311 (13%), Positives = 99/311 (31%), Gaps = 41/311 (13%)
Query: 746 SGSEQWSEMIEKH--MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLID 803
+ +++ KH + +L ++ + + + +L + ++
Sbjct: 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 231
Query: 804 SA-------LHDDVASVRSAACRAIGVISCFP----QVSQSAEIIDKFIHAVEINTHDPL 852
LH + V + +C AI ++ P ++ ++ + + +
Sbjct: 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL----GATE 287
Query: 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSN 912
+ + A A+ NI D + ID+ A + + LT I+
Sbjct: 288 LPIVTPALRAIGNIV-----TGTDEQTQKVIDAGALAVFPSLLTNPK-------TNIQKE 335
Query: 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972
A + N++ + + +V LV ++ + K Q A++N
Sbjct: 336 ATWTMSNITAG----RQDQIQQVVNHG----LVPFLVGVLSKADFKTQKEAAWAITNYTS 387
Query: 973 NETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLE 1032
T+ + L+ LL KI A+ S++ + + +
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAI---SNIFQAAEKLGETEKLSI 443
Query: 1033 HILENLGADHL 1043
I E G D +
Sbjct: 444 MIEECGGLDKI 454
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 26/230 (11%)
Query: 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLID---SALHDDVASVRSAACR 819
L + T A+ I + ++TQ+ I + + S L + +++ A
Sbjct: 283 LGATELPIVTPALRAIGNIVTGT----DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338
Query: 820 AIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAF 879
+ I+ Q + + + + A+WA+ N +
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL- 397
Query: 880 KPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSR 939
+ LM L+ KI + + N+ + + + S+
Sbjct: 398 ---VHCGIIEPLMNLLSAK-------DTKIIQVILDAISNIFQAAEKLGETEKLSI---- 443
Query: 940 WLER--IVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
+E + + + N V + F E ED + P
Sbjct: 444 MIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE--EEEDQNVVPET 491
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 43/292 (14%), Positives = 92/292 (31%), Gaps = 45/292 (15%)
Query: 760 PLI--LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817
L+ L V A+T + + + + ++ L+ +
Sbjct: 102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAIT 160
Query: 818 CRAIGVISCFPQVSQSAEIIDKFIHA------VEINTHDPLVSVRITASWALANIC--DS 869
+ +++ + E + + V I + T S L + S
Sbjct: 161 TDCLQILAY-----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215
Query: 870 IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSS 929
+ I +++ L LT+ + ++ N + L NLS ++
Sbjct: 216 NKPAI--------VEAGGMQALGLHLTDPS-------QRLVQNCLWTLRNLSD----AAT 256
Query: 930 SHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS 989
G ++ LV + + ++ V LSNL N N + + +
Sbjct: 257 KQEGMEG-------LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 990 ILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQ---GLEHILENL 1038
++ +LR I A AL +S + + V+ GL +++ L
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-07
Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 32/267 (11%)
Query: 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRA 820
+L V T A + +T + + + + Q I +L+ + L D + A A
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330
Query: 821 IGVISCFPQVSQ-------SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHC 873
+ ++ Q ++ + + + +H PL+ + LA +
Sbjct: 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 390
Query: 874 IDDFAFKP------SIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYT 927
+ A + T+ ++I L L+R V
Sbjct: 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--- 447
Query: 928 SSSHPASLGDSRWL---ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA 984
+R + + V + + +Q L L ++ + A
Sbjct: 448 ---------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--EAAEAIEA 496
Query: 985 PSVFSILLLLLRDSSNFKIRIQAAAAL 1011
+ L LL S N + AAA L
Sbjct: 497 EGATAPLTELLH-SRNEGVATYAAAVL 522
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 31/238 (13%)
Query: 806 LHDDVASVRSAACRAIGVISCFP----QVSQSAEIIDKFIHAVEINTHDPLVSVRITASW 861
L+D+ V + A + +S + +S +++ + ++ NT+D +
Sbjct: 23 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ-NTNDV--ETARCTAG 79
Query: 862 ALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLS 921
L N+ + S L+ L D + A+ L NL
Sbjct: 80 TLHNLSHHREGLLA------IFKSGGIPALVKMLGS-------PVDSVLFYAITTLHNLL 126
Query: 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDM 981
++ +Q +V+ + NVK L L + + +
Sbjct: 127 LH----QEGAKMAVRL----AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLI 177
Query: 982 DWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF--SDVVQGLEHILEN 1037
A L+ ++R + K+ + L V S S + + +Q L L +
Sbjct: 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 5e-11
Identities = 57/355 (16%), Positives = 115/355 (32%), Gaps = 63/355 (17%)
Query: 728 LYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISS---MVRTAAVTCFAGITSS 784
D E ++ S +Q+ +++ +P + Q ++S + +A F I S
Sbjct: 58 FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117
Query: 785 VFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSA----EIIDK 839
+ Q ++ L++ + ++ A A+ I+ + +
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177
Query: 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESA 899
FI + + + V+ A WAL N+ D + NA ++ +
Sbjct: 178 FIQLLYTGSVE----VKEQAIWALGNVAGDSTDYRDYV-----LQCNAMEPILGLFNSNK 228
Query: 900 LNLTKDGDKIKSNAVRGLGNLSR-----------------FVKYTSSSHPASLGDSRWL- 941
+ A L NL R K S +L D+ W
Sbjct: 229 P-------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281
Query: 942 ----------------ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
RI + LV ++ + VQ RA+ N+ + + +
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NA 340
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF---SDVVQGLEHILEN 1037
V L LLL S I+ +A ++ ++ + ++++ L +LE
Sbjct: 341 GVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 6e-09
Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 25/252 (9%)
Query: 790 LKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA--VEIN 847
+ + + DD+ + +A I +I + VE
Sbjct: 81 FYSQLQQELPQMTQQLNSDDM-QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
Query: 848 THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD 907
+ +++ A+WAL NI K +D++A + L ++
Sbjct: 140 RENQPEMLQLEAAWALTNIA-----SGTSAQTKVVVDADAVPLFIQLLYTGSVE------ 188
Query: 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967
+K A+ LGN++ S+ + + ++ ++ + + L
Sbjct: 189 -VKEQAIWALGNVAGD----STDYRDYVLQCN----AMEPILGLFNSNKPSLIRTATWTL 239
Query: 968 SNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDV 1027
SNL + D L L+ S + + + A A++ S
Sbjct: 240 SNLCRGKK-PQPDWSVVSQALPTLAKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVID 297
Query: 1028 VQGLEHILENLG 1039
V+ + ++E L
Sbjct: 298 VRIPKRLVELLS 309
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 19/218 (8%)
Query: 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIG 822
L H S++V+T A+ I + ++ +L +++ AC I
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE-NIKKEACWTIS 366
Query: 823 VISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882
I+ A I I + + A WA++N D
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD------I 420
Query: 883 IDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941
I + + L +L + D +I + L N+ + + + L +
Sbjct: 421 IRYLVSQGCIKPL----CDLLEIADNRIIEVTLDALENILKMGE--ADKEARGLNINENA 474
Query: 942 ERIVQA-----LVSCVTTGNVKVQWNVCRALSNLFLNE 974
+ I +A + +C N K+ + + F E
Sbjct: 475 DFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 6e-11
Identities = 44/292 (15%), Positives = 99/292 (33%), Gaps = 42/292 (14%)
Query: 759 MPLILQHISS---MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRS 815
+P ++ + S V A+T + + + + ++ L+ +
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLA 294
Query: 816 AACRAIGVISCFPQVSQ----SAEIIDKFIHAVEINTHDPLVSVRITASWALAN--ICDS 869
+ +++ Q S+ ++ ++ + T++ + T S L +C S
Sbjct: 295 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSS 351
Query: 870 IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSS 929
+ I +++ L +LT ++ N + L NLS
Sbjct: 352 NKPAI--------VEAGGMQALGL-------HLTDPSQRLVQNCLWTLRNLS-------- 388
Query: 930 SHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS 989
+E ++ LV + + ++ V LSNL N N + + +
Sbjct: 389 DAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 445
Query: 990 ILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQ---GLEHILENL 1038
++ +LR I A AL +S + + V+ GL +++ L
Sbjct: 446 LVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 41/266 (15%), Positives = 80/266 (30%), Gaps = 30/266 (11%)
Query: 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHD-DVASVRSAACRA 820
+L V T A + +T + + + + Q I +L+ + L D + A A
Sbjct: 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466
Query: 821 IGVISCFPQ---VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANIC---DSIRHCI 874
+ ++ Q ++Q+A + + V H P I A+ L + +
Sbjct: 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 526
Query: 875 DDFAFKP-------SIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYT 927
+ P + T+ ++I L L+R +
Sbjct: 527 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNR 586
Query: 928 SSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE--TINLEDMDWAP 985
+ + V + + +Q L L ++ +E
Sbjct: 587 -----IVIRG----LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG--- 634
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAAL 1011
+ L LL S N + AAA L
Sbjct: 635 -ATAPLTELLH-SRNEGVATYAAAVL 658
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 51/315 (16%), Positives = 98/315 (31%), Gaps = 62/315 (19%)
Query: 743 AFQSGSEQWSEMIEKH--MPLILQHISS---MVRTAAVTCFAGITSSVFFSLLKET--QE 795
F EM +++ I S + +A F + S + E
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63
Query: 796 FIISSLIDSALHDDVASVRSAACRAIGVISC----FPQVSQSAEIIDKFIHAVEINTHDP 851
+++ ++ + +++ + + I+ ++ A + FI +
Sbjct: 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS----SE 119
Query: 852 LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS 911
V+ A WAL NI C D +D N L+ ++ + +
Sbjct: 120 FEDVQEQAVWALGNIAGDSTMCRDYV-----LDCNILPPLLQLFSKQ------NRLTMTR 168
Query: 912 NAVRGLGNLSR-----------------FVKYTSSSHPASLGDSRWL------------- 941
NAV L NL R S L D+ W
Sbjct: 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228
Query: 942 ----ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997
+ + LV + + KV RA+ N+ + I + + ++ S+L LL
Sbjct: 229 AVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL--S 286
Query: 998 SSNFKIRIQAAAALA 1012
S I+ +A ++
Sbjct: 287 SPKESIKKEACWTIS 301
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 50/326 (15%), Positives = 99/326 (30%), Gaps = 55/326 (16%)
Query: 728 LYEQESSEDIKESAKAFQ---SGSEQWSEMIEKH--MPLILQHISS---MVRTAAVTCFA 779
L +E+ ESA SG+ + ++ + +P+ ++ +SS V+ AV
Sbjct: 73 LKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALG 132
Query: 780 GITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDK 839
I I+ L+ + ++ A A+ + +
Sbjct: 133 NIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192
Query: 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESA 899
++ + V A WAL+ + D I ID+ L+ L +
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-----IDAGVCRRLVELLMHND 247
Query: 900 LNLTKDGDKIKSNAVRGLGNLSR-----------------FVKYTSSSHPA--------- 933
+ S A+R +GN+ + SS +
Sbjct: 248 YK-------VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300
Query: 934 ---SLGDSRWLERIVQA-----LVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
+ G+ ++ ++ A L+S + T + + A++N +
Sbjct: 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAAL 1011
L LL + KI A L
Sbjct: 361 GCIKPLCDLLTVMDS-KIVQVALNGL 385
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 38/263 (14%), Positives = 79/263 (30%), Gaps = 42/263 (15%)
Query: 760 PLI--LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817
L+ L V A+T + + + + ++ L+ +
Sbjct: 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAIT 163
Query: 818 CRAIGVISCFPQVSQSAEIIDKFIHA------VEINTHDPLVSVRITASWALANIC--DS 869
+ +++ + E + + V I + T S L + S
Sbjct: 164 TDCLQILAY-----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218
Query: 870 IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSS 929
+ I +++ L LT+ + ++ N + L NLS
Sbjct: 219 NKPAI--------VEAGGMQALGLHLTDPS-------QRLVQNCLWTLRNLS-------- 255
Query: 930 SHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS 989
+E ++ LV + + ++ V LSNL N N + + +
Sbjct: 256 DAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312
Query: 990 ILLLLLRDSSNFKIRIQAAAALA 1012
++ +LR I A AL
Sbjct: 313 LVRTVLRAGDREDITEPAICALR 335
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 36/248 (14%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFP----QVSQSAEIIDKFIHAVEINTHDPLV 853
I L L+D+ V + A + +S + +S +++ + ++ NT+D
Sbjct: 19 IPELTKL-LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ-NTNDV-- 74
Query: 854 SVRITASWALANIC--DSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS 911
+ L N+ I S L+ L D +
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAI--------FKSGGIPALVKMLGS-------PVDSVLF 119
Query: 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971
A+ L NL ++ +Q +V+ + NVK L L
Sbjct: 120 YAITTLHNLLLH----QEGAKMAVRL----AGGLQKMVALLNKTNVKFLAITTDCLQILA 171
Query: 972 LNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF--SDVVQ 1029
+ + + A L+ ++R + K+ + L V S S + + +Q
Sbjct: 172 YGNQES-KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 230
Query: 1030 GLEHILEN 1037
L L +
Sbjct: 231 ALGLHLTD 238
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 40/305 (13%), Positives = 91/305 (29%), Gaps = 50/305 (16%)
Query: 760 PLI--LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817
L L S + + ++ + + +E E ++ +L+ DD+ +V + A
Sbjct: 231 ALGLHLTDPSQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDI-NVVTCA 286
Query: 818 CRAIGVISCFPQVSQ----SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHC 873
+ ++C ++ I+ + V + A AL ++ RH
Sbjct: 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE--DITEPAICALRHLT--SRHQ 342
Query: 874 IDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPA 933
+ A ++ L + V + NL+ ++ A
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPP------SHWPLIKATVGLIRNLAL-----CPANHA 391
Query: 934 SLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDM-DWAPSVFSIL- 991
L + + + LV + + Q + E + +E++ + IL
Sbjct: 392 PLRE----QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447
Query: 992 -----------------LLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF--SDVVQGLE 1032
+ L S I+ AA L + + ++ L
Sbjct: 448 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 507
Query: 1033 HILEN 1037
+L +
Sbjct: 508 ELLHS 512
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 26/264 (9%)
Query: 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHD-DVASVRSAACRA 820
+L V T A + +T + + + + Q I +L+ + L D + A A
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333
Query: 821 IGVISCFPQVS---QSAEIIDKFIHAVEINTHDPLVSVRITASWALANIC---DSIRHCI 874
+ ++ Q + Q+A + + V H P I A+ L + +
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393
Query: 875 DDFAFKP-------SIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYT 927
+ P + T+ ++I L L+R
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR----- 448
Query: 928 SSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987
+ + + V + + +Q L L ++ E + A
Sbjct: 449 DVHNRIVIRG----LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE-AAEAI-EAEGA 502
Query: 988 FSILLLLLRDSSNFKIRIQAAAAL 1011
+ L LL S N + AAA L
Sbjct: 503 TAPLTELLH-SRNEGVATYAAAVL 525
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 41/225 (18%)
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA------VEINTHD 850
+ ++ D +A R + I+ S E I I A V++ +
Sbjct: 13 ELPQMVQQLNSPDQ-QELQSALRKLSQIA-----SGGNEQIQAVIDAGALPALVQLLSS- 65
Query: 851 PLVSVRITASWALANI---CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD 907
P + A WAL+NI + + ID+ A L+ L+ +
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAV--------IDAGALPALVQLLSSPN-------E 110
Query: 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967
+I A+ L N++ + ++ D+ + ALV +++ N ++ AL
Sbjct: 111 QILQEALWALSNIA----SGGNEQIQAVIDAG----ALPALVQLLSSPNEQILQEALWAL 162
Query: 968 SNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012
SN+ + + A L L + KI+ +A AL
Sbjct: 163 SNIASGGNEQKQAVKEA-GALEKLEQLQSHENE-KIQKEAQEALE 205
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 31/182 (17%)
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ----SAEIIDKFIHAVEINTHDPL 852
+ +L+ + + A A+ I+ A + + + P
Sbjct: 55 ALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPN 109
Query: 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKS 911
+ A WAL+NI I ID+ A L + L + +I
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAV-----IDAGALPAL--------VQLLSSPNEQILQ 156
Query: 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971
A+ L N++ + ++ ++ ++ L + N K+Q AL L
Sbjct: 157 EALWALSNIASG----GNEQKQAVKEAG----ALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Query: 972 LN 973
+
Sbjct: 209 SH 210
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 9e-10
Identities = 36/267 (13%), Positives = 76/267 (28%), Gaps = 70/267 (26%)
Query: 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIG 822
+ + R I K+ ++ + + L + AL+D A VR+ A +
Sbjct: 63 CSDKNYIRRDIGAFILGQIKIC------KKCEDNVFNILNNMALNDKSACVRATAIESTA 116
Query: 823 VISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882
++ K + +I D +VR ++A++ I D
Sbjct: 117 QRC-----KKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------------- 157
Query: 883 IDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941
+ +NL KD + +++ A + +
Sbjct: 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININ-------------KYDN---- 190
Query: 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN-----LEDMDW------------A 984
I V + N +V+ LS ++ L+
Sbjct: 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGD 250
Query: 985 PSVFSILLLLLRDSSNFKIRIQAAAAL 1011
++ +L +L + +I A L
Sbjct: 251 KTLLPVLDTMLYKFDDNEIITSAIDKL 277
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 30/267 (11%), Positives = 72/267 (26%), Gaps = 75/267 (28%)
Query: 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF 827
+ + A + L + ++ L L D + R ++ R + +
Sbjct: 4 TYQKRKASKEYG---------LYNQCKKLNDDELFR-LLDDHNSLKRISSARVLQLR--- 50
Query: 828 PQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887
+ + I D R ++ L I
Sbjct: 51 ----GGQDAVRLAIEFCS----DKNYIRRDIGAFILGQI----------------KICKK 86
Query: 888 NSHLMASLTESALNLTKDGDK-IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQ 946
+ ++ + D +++ A+ + + + +IV+
Sbjct: 87 CEDNVFNILNNM--ALNDKSACVRATAIESTAQRCK-------------KNPIYSPKIVE 131
Query: 947 ALVSCVTTGNVKVQWNVCRALSNLFLNETIN-----LEDMDW----------------AP 985
+ V+ A+S + TI L+D +
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALA 1012
+ + +L+D N ++RI+A L+
Sbjct: 192 DIRDCFVEMLQD-KNEEVRIEAIIGLS 217
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 46/254 (18%)
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA------VE-INTH 849
+ + DD+ + +A R I S E I I A V+ +++
Sbjct: 13 ELPQMTQQLNSDDM-QEQLSATRKFSQIL-----SDGNEQIQAVIDAGALPALVQLLSSP 66
Query: 850 DPLVSVRITASWALANIC---DSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906
+ + A WAL+NI + + ID+ A L+ L+
Sbjct: 67 NE--QILQEALWALSNIASGGNEQIQAV--------IDAGALPALVQLLSSPN------- 109
Query: 907 DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRA 966
++I A+ L N++ + ++ D+ + ALV +++ N ++ A
Sbjct: 110 EQILQEALWALSNIA----SGGNEQIQAVIDA----GALPALVQLLSSPNEQILQEALWA 161
Query: 967 LSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF-- 1024
LSN+ ++ + A ++ L+ LL + +I +A AL+ +S + K
Sbjct: 162 LSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVK 219
Query: 1025 -SDVVQGLEHILEN 1037
+ ++ LE + +
Sbjct: 220 EAGALEKLEQLQSH 233
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 49/262 (18%)
Query: 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFI--------ISSLIDSALHDDVASVR 814
L + +A F+ +L + E I + +L+ L +
Sbjct: 21 LNSDDMQEQLSATRKFS--------QILSDGNEQIQAVIDAGALPALV-QLLSSPNEQIL 71
Query: 815 SAACRAIGVISCFP----QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI 870
A A+ I+ Q A + + + P + A WAL+NI
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASGG 127
Query: 871 RHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSS 929
I ID+ A L + L + +I A+ L N++ +
Sbjct: 128 NEQIQA-----VIDAGALPAL--------VQLLSSPNEQILQEALWALSNIASG----GN 170
Query: 930 SHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS 989
++ D+ + ALV +++ N ++ ALSN+ + + A
Sbjct: 171 EQIQAVIDAG----ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA-GALE 225
Query: 990 ILLLLLRDSSNFKIRIQAAAAL 1011
L L N KI+ +A AL
Sbjct: 226 KLEQLQS-HENEKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 37/184 (20%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLV---- 853
+ +L+ + + A A+ I+ E I I A LV
Sbjct: 98 LPALVQLLSSPNE-QILQEALWALSNIAS-----GGNEQIQAVIDA---GALPALVQLLS 148
Query: 854 ----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKI 909
+ A WAL+NI I + ID+ A L+ L+ ++I
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQI-----QAVIDAGALPALVQLLSS-------PNEQI 196
Query: 910 KSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969
A+ L N++ + ++ + ++ L + N K+Q AL
Sbjct: 197 LQEALWALSNIAS----GGNEQKQAVKE----AGALEKLEQLQSHENEKIQKEAQEALEK 248
Query: 970 LFLN 973
L +
Sbjct: 249 LQSH 252
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 55/251 (21%), Positives = 78/251 (31%), Gaps = 80/251 (31%)
Query: 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIG 822
LQ S VR AA I E + LI AL D+ A VR AA A+G
Sbjct: 23 LQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK-ALKDEDAWVRRAAADALG 70
Query: 823 VISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882
I ++ I A+ D VR +A+ AL I
Sbjct: 71 QI-------GDERAVEPLIKAL----KDEDGWVRQSAAVALGQIG--------------- 104
Query: 883 IDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941
D A L+ +L KD D ++ A LG +GD R +
Sbjct: 105 -DERAVEPLIKAL--------KDEDWFVRIAAAFALGE---------------IGDERAV 140
Query: 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNF 1001
E +++AL + V+ + AL + V + + L
Sbjct: 141 EPLIKAL----KDEDGWVRQSAADALGEI------------GGERVRAAMEKLAET-GTG 183
Query: 1002 KIRIQAAAALA 1012
R A L
Sbjct: 184 FARKVAVNYLE 194
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 46/216 (21%), Positives = 74/216 (34%), Gaps = 69/216 (31%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRI 857
+ I L DD VR AA A+G I ++ I A++ D VR
Sbjct: 16 VEMYIK-NLQDDSYYVRRAAAYALGKI-------GDERAVEPLIKALK----DEDAWVRR 63
Query: 858 TASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRG 916
A+ AL I D + +++ L+ +L KD D ++ +A
Sbjct: 64 AAADALGQIGD-----------ERAVE-----PLIKAL--------KDEDGWVRQSAAVA 99
Query: 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETI 976
LG +GD R +E +++AL + V+ AL +
Sbjct: 100 LGQ---------------IGDERAVEPLIKALKD----EDWFVRIAAAFALGEI------ 134
Query: 977 NLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012
L+ L+D + +R AA AL
Sbjct: 135 ------GDERAVEPLIKALKD-EDGWVRQSAADALG 163
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 25/111 (22%)
Query: 760 PLI--LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817
PLI L+ VR +A I L + AL D+ VR AA
Sbjct: 80 PLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIK------------ALKDEDWFVRIAA 127
Query: 818 CRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
A+G I ++ I A++ D VR +A+ AL I
Sbjct: 128 AFALGEI-------GDERAVEPLIKALK----DEDGWVRQSAADALGEIGG 167
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 58.2 bits (139), Expect = 2e-08
Identities = 38/288 (13%), Positives = 95/288 (32%), Gaps = 32/288 (11%)
Query: 755 IEKHMPLILQHISSM---VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVA 811
H+ +L+ ++S R A L +++ ++ ++ L D
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILK-LLEDKNG 62
Query: 812 SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871
V++ A + +G + + Q I+D + +R +S L + +
Sbjct: 63 EVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML----SDKEQLRDISSIGLKTVIGELP 118
Query: 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGN-LSRFVKYTSSS 930
++ +N + LT + ++ ++ A+ + + LSR +
Sbjct: 119 PASSG----SALAANVCKKITGRLTSAIAK--QEDVSVQLEALDIMADMLSRQGGLLVNF 172
Query: 931 HPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSI 990
HP+ I+ L+ +T+ + V+ AL +L ++ + +
Sbjct: 173 HPS----------ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEH 217
Query: 991 LLLLLRDSSNFKIRIQAAAALA--VPSSVSDYGKSFSDVVQGLEHILE 1036
LL L + + +A + G+ ++ +
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 57.0 bits (136), Expect = 3e-08
Identities = 97/686 (14%), Positives = 206/686 (30%), Gaps = 63/686 (9%)
Query: 352 PQDHRIFSDDDSFTMNFMSSDSDYSDSDGSIKDTDSVQSSKVRVAALVCLQDLCRADPKS 411
P + D+D M+ D D SD D D + S KVR AA CL + +
Sbjct: 309 PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM-SWKVRRAAAKCLDAVVSTRHEM 367
Query: 412 FTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471
+ + P + + + ++L V + +
Sbjct: 368 LPEFYKTVSPA-------------LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 414
Query: 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRM 531
+ + + + S I++ ++ +E + F +L L++ P +
Sbjct: 415 PDAMEQGETPLTMLQSQVPNIVK----ALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-- 468
Query: 532 PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISA 591
+ I L I K+ + L + A+SCL L V +
Sbjct: 469 ----LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 592 GSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKI 651
+ D + L +++L ++ +R + + Y + + T K
Sbjct: 525 VACVGDPFYKITSEALLVTQQL---------VKVIRPLDQPSSFDATPYIKDLFTCTIKR 575
Query: 652 LKAASPEVPAKAWKGHV-GNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDD--KL 708
LKAA + K G +G+ + + L L + + +
Sbjct: 576 LKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLI 635
Query: 709 LDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQ--------SGSEQWSEMIEKHMP 760
+P D + L + MI+ +
Sbjct: 636 AGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695
Query: 761 LILQHISSM---VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVA-SVRSA 816
+ IS V A++ + + V+ S L + I++ LI + SA
Sbjct: 696 ELPPLISESDMHVSQMAISFLTTL-AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Query: 817 ACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS--VRITASWALANICDS----- 869
+ + + + + + L + + +A + +
Sbjct: 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814
Query: 870 ---IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY 926
+ I D S DS L++ ++KS + + S VK
Sbjct: 815 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKS 874
Query: 927 TSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPS 986
+S S+ L + ++ +T+ K Q+ + +L + + ++ + +
Sbjct: 875 AASYALGSISVGN-LPEYLPFVLQEITSQP-KRQYLLLHSLKEIISSASVV-GLKPYVEN 931
Query: 987 VFSILLLLLRDSSNFKIRIQAAAALA 1012
++++LL + R A L
Sbjct: 932 IWALLLKHCEC-AEEGTRNVVAECLG 956
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 47.4 bits (111), Expect = 3e-05
Identities = 81/626 (12%), Positives = 188/626 (30%), Gaps = 108/626 (17%)
Query: 499 IIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQT 558
++ + R ++S+ L +I P + L N+ + R+ + D +
Sbjct: 92 CTNMLSDKEQLRDISSI--GLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 559 GLLVAAISCLTAALSTSPAPV-----QVKQMFLEEISAGSVEVDKRS------------- 600
L A+ + LS + + L ++++ + V KR+
Sbjct: 150 VQL-EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208
Query: 601 ----GVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAAS 656
++ LL + S + +Q + A+S + + Y +++ +V K
Sbjct: 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDD 268
Query: 657 PEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716
E + + ++A F + P S
Sbjct: 269 DE---------------------------LREYCIQAFESF-----VRRCPKEVYPHVST 296
Query: 717 CIRI--KNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAA 774
I I K ++ P Y + ++ + + A + + +S VR AA
Sbjct: 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD---DQGSDDEYSDDDDMSWKVRRAA 353
Query: 775 VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS- 833
C + S +L E + + +LI + +V++ A + + QS
Sbjct: 354 AKCLDAV-VSTRHEMLPEFYKTVSPALIS-RFKEREENVKADVFHAYLSLLKQTRPVQSW 411
Query: 834 -----------------AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDD 876
+ + A+ + V R L + + + +
Sbjct: 412 LCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ 471
Query: 877 FAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLG 936
++ +LN +K +A+ L + +H +
Sbjct: 472 H-----------IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI-------LCNHSPQVF 513
Query: 937 DSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL-----FLNETINLEDMDWAPSVFSIL 991
++ +V +V+CV K+ L L++ + + + +F+
Sbjct: 514 HP-HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 572
Query: 992 LLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF-SDVVQGLEHILENLGADHLSAPSSFK 1050
+ L+ + + + A + + + + G + SD+ L+ LE L + +
Sbjct: 573 IKRLKAADIDQEVKERAIS-CMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKA 631
Query: 1051 YRVALQKQKSSFLEEWFKVLCSSLGE 1076
+ L L
Sbjct: 632 LTLIAGSPLKIDLRPVLGEGVPILAS 657
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 55/251 (21%), Positives = 77/251 (30%), Gaps = 80/251 (31%)
Query: 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIG 822
LQ S VR AA I E + LI AL D+ A VR AA A+G
Sbjct: 28 LQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK-ALKDEDAWVRRAAADALG 75
Query: 823 VISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882
I ++ I A+ D VR +A+ AL I
Sbjct: 76 QI-------GDERAVEPLIKAL----KDEDGWVRQSAAVALGQIG--------------- 109
Query: 883 IDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941
D A L+ +L KD D ++ A LG +GD
Sbjct: 110 -DERAVEPLIKAL--------KDEDWFVRIAAAFALGE---------------IGD---- 141
Query: 942 ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNF 1001
ER V+ L+ + + V+ + AL + V + + L
Sbjct: 142 ERAVEPLIKALKDEDGWVRQSAADALGEI------------GGERVRAAMEKLAET-GTG 188
Query: 1002 KIRIQAAAALA 1012
R A L
Sbjct: 189 FARKVAVNYLE 199
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 47/216 (21%), Positives = 71/216 (32%), Gaps = 69/216 (31%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRI 857
+ I L DD VR AA A+G I ++ I A++ D VR
Sbjct: 21 VEMYIK-NLQDDSYYVRRAAAYALGKI-------GDERAVEPLIKALK----DEDAWVRR 68
Query: 858 TASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRG 916
A+ AL I D A L+ +L KD D ++ +A
Sbjct: 69 AAADALGQIG----------------DERAVEPLIKAL--------KDEDGWVRQSAAVA 104
Query: 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETI 976
LG +GD R +E +++AL + V+ AL +
Sbjct: 105 LGQ---------------IGDERAVEPLIKALKD----EDWFVRIAAAFALGEI------ 139
Query: 977 NLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012
L+ L+D + +R AA AL
Sbjct: 140 ------GDERAVEPLIKALKD-EDGWVRQSAADALG 168
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 25/111 (22%)
Query: 760 PLI--LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817
PLI L+ VR +A I L + AL D+ VR AA
Sbjct: 85 PLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIK------------ALKDEDWFVRIAA 132
Query: 818 CRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868
A+G I ++ I A++ D VR +A+ AL I
Sbjct: 133 AFALGEI-------GDERAVEPLIKALK----DEDGWVRQSAADALGEIGG 172
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 44/340 (12%), Positives = 99/340 (29%), Gaps = 47/340 (13%)
Query: 747 GSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL 806
G ++ + + + ++VR AV ++ E L+
Sbjct: 80 GGPEYVHCLLPPLESLATVEETVVRDKAVESLR----AISHEHSPSDLEAHFVPLVKRLA 135
Query: 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866
D + R++AC V + AE+ F + D VR A+ L
Sbjct: 136 GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCS----DDTPMVRRAAASKLGEF 191
Query: 867 CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLSRFVK 925
+ N S ++ NL D D ++ AV N+++
Sbjct: 192 AKVLE------------LDNVKSEIIPMF----SNLASDEQDSVRLLAVEACVNIAQL-- 233
Query: 926 YTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAP 985
L ++ L + +V++ V + L +
Sbjct: 234 ---------LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ----KAVGPEITKT 280
Query: 986 SVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADH--- 1042
+ L++D ++R A+ + + ++ + ++ L +D
Sbjct: 281 DLVPAFQNLMKDCEA-EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH 339
Query: 1043 --LSAPSSFKYRVALQKQKSSFLEEWFKVLCSSLGESTTH 1080
+ S ++ K + +E + + L +
Sbjct: 340 VKSALASVIM-GLSPILGKDNTIEHLLPLFLAQLKDECPE 378
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 38/300 (12%), Positives = 83/300 (27%), Gaps = 61/300 (20%)
Query: 747 GSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLID--- 803
E ++ + + S VR F + +V E + L+
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV-------GPEITKTDLVPAFQ 287
Query: 804 SALHDDVASVRSAACRAIG-VISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWA 862
+ + D A VR+AA + + I+ + + ++ D V+ +
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 863 LANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGN-- 919
+ + + N HL+ L KD ++ N + L
Sbjct: 348 IMGLSPIL------------GKDNTIEHLLPLF----LAQLKDECPEVRLNIISNLDCVN 391
Query: 920 ------------LSRFVKYTSSSHP--------------ASLGDSRWLERIVQALVSCVT 953
L V+ + LG + E++ ++ +
Sbjct: 392 EVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV 451
Query: 954 TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013
++ L L + +WA + +L + N+ R+ + V
Sbjct: 452 DHVYAIREAATSNLKKL-----VEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 7/141 (4%)
Query: 743 AFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI 802
A Q G E + E + L +R AA + + KE I +
Sbjct: 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE----KFGKEWAHATIIPKV 485
Query: 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWA 862
+ D R I V+S +V + V DP+ +VR + +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLS---EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 863 LANICDSIRHCIDDFAFKPSI 883
L I + + KP +
Sbjct: 543 LQKIGPILDNSTLQSEVKPIL 563
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 37/228 (16%)
Query: 747 GSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL 806
G Q S+ + + + + VR A + + L E + ++SL + L
Sbjct: 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ----LGVEFFDEKLNSLCMAWL 450
Query: 807 HDDVASVRSAACRAIGVI-SCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALAN 865
D V ++R AA + + F + A II K + DP R+T + +
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS----GDPNYLHRMTTLFCINV 506
Query: 866 ICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGNLSRFV 924
+ + I P++ L + D ++ N + L +
Sbjct: 507 LSEVCGQDITTKHMLPTV----------------LRMAGDPVANVRFNVAKSLQKIGP-- 548
Query: 925 KYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972
L +S + L +V V++ AL+ L L
Sbjct: 549 ---------ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 731 QESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLL 790
+ ++ ++K+ + F G E I + + + + R + C ++ +
Sbjct: 459 EAATSNLKKLVEKF--GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 791 KETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHD 850
+ ++ +++ D VA+VR +++ I P + S + + +E T D
Sbjct: 517 TKH---MLPTVL-RMAGDPVANVRFNVAKSLQKI--GPILDNST-LQSEVKPILEKLTQD 569
Query: 851 PLVSVRITASWALANI 866
V V+ A AL +
Sbjct: 570 QDVDVKYFAQEALTVL 585
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 3e-07
Identities = 37/245 (15%), Positives = 79/245 (32%), Gaps = 27/245 (11%)
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ---SAEIIDKFIHAVEINTHDPLV 853
I ++L + + + + R + + ++ + + T
Sbjct: 496 ITTALC-ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEK--- 551
Query: 854 SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913
+ A+ ALA I +I + +F + L+ L + +
Sbjct: 552 -GKRHATQALARIGITINPEV---SFSGQRSLDVIRPLLNLLQQD------CTALENFES 601
Query: 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973
+ L NL+ S S+ E+ V + + ++ + + L NL ++
Sbjct: 602 LMALTNLA--------SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653
Query: 974 ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEH 1033
E ++ + L LL + + + A ALA+ +SVS +
Sbjct: 654 ED-VIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711
Query: 1034 ILENL 1038
IL L
Sbjct: 712 ILHTL 716
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 6e-05
Identities = 37/258 (14%), Positives = 69/258 (26%), Gaps = 34/258 (13%)
Query: 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISS-----LIDSALHDDVASVRSA 816
+ + S + + KE + ++ L+ AL R A
Sbjct: 503 LAKTESHNSQELIARVLNAVCGL------KELRGKVVQEGGVKALLRMALEGTEKGKRHA 556
Query: 817 AC-RAIGVISCFPQVSQSAEIIDKFIHA-VEINTHDPLVSVRITASWALANICDSIRHCI 874
A I+ P+VS S + I + + D + AL N+
Sbjct: 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616
Query: 875 DDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPAS 934
I S + L E D + A + L NL
Sbjct: 617 QRI-----IKEQGVSKIEYYLME-------DHLYLTRAAAQCLCNLV--------MSEDV 656
Query: 935 LGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL 994
+ V+ L + + AL+ + E + S IL L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716
Query: 995 LRDSSNFKIRIQAAAALA 1012
+ + + ++ + +
Sbjct: 717 IA-NPSPAVQHRGIVIIL 733
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 6e-05
Identities = 69/440 (15%), Positives = 144/440 (32%), Gaps = 52/440 (11%)
Query: 620 FESLQALRAVSHNYPN--IMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGE 677
+L L+ + P+ + + +++ T++ ++ + + +G +
Sbjct: 120 LNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDR-----------TISGAARD 168
Query: 678 KVVTAAIKVLDESLRAISGF----KGTEDLLD--DKLLDNPFTSDCIRIKNISSAPLYEQ 731
V+ + + + + +G LLD +L D + S + S+
Sbjct: 169 GVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCL 228
Query: 732 ESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLK 791
+ +A ++Q E I+ + L S + T A+T V ++
Sbjct: 229 ARIYENMYYDEAKARFTDQIDEYIKDKL-LAPDMESKVRVTVAITALLNGPLDVGNQVVA 287
Query: 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDP 851
I+ ++ A DD + AC + S ++ + ++ + ++ H
Sbjct: 288 REG--ILQMILAMATTDDEL-QQRVACECLIAASSKKD--KAKALCEQGVDILKRLYHSK 342
Query: 852 LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS 911
+R+ A L + + D A +P D A L + + KD D I+
Sbjct: 343 NDGIRVRALVGLCKLG---SYGGQDAAIRPFGDG-AALKLAEACRRFLIKPGKDKD-IRR 397
Query: 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971
A GL L+ + L + + + AL+ GN + V NL
Sbjct: 398 WAADGLAYLT-----LDAECKEKLIED---KASIHALMDLARGGNQSCLYGVVTTFVNL- 448
Query: 972 LNETINLEDMDWAPSVFSILLLL---------LRDSSNFKIRIQAAAALAVPSSVSDYGK 1022
E + P + + L D RI A + +++ K
Sbjct: 449 ---CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK 505
Query: 1023 SFSDVVQGLEH-ILENLGAD 1041
+ S Q L +L +
Sbjct: 506 TESHNSQELIARVLNAVCGL 525
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-07
Identities = 30/241 (12%), Positives = 85/241 (35%), Gaps = 28/241 (11%)
Query: 795 EFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS 854
E ++ LI L DD+ +V A I VI+ + ++ K + +
Sbjct: 31 ESVLKKLI-ELLDDDLWTVVKNAISIIMVIAKTREDLYEP-MLKKLFSLL---KKSEAIP 85
Query: 855 VRITASWALANIC----DSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIK 910
+ + A + + ++ I + + +++ + + K +
Sbjct: 86 LTQEIAKAFGQMAKEKPELVKSMIPVLF---ANYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 911 SNAVRGLGNL----SRFVKYTSSSHPASLG--DSRWLERIVQALVSCVTTGNVKVQWNVC 964
++ VR ++ +R K T+ + ++G +++ + +++ + G+ V+ +
Sbjct: 143 ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAV 202
Query: 965 RALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF 1024
AL +L + +++ L + ++ + + + G S
Sbjct: 203 EALVHL----------ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSS 252
Query: 1025 S 1025
S
Sbjct: 253 S 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 26/232 (11%), Positives = 70/232 (30%), Gaps = 42/232 (18%)
Query: 805 ALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALA 864
++ ++ +R A + ++ K I ++ D L +V A +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD----DDLWTVVKNAISIIM 57
Query: 865 NICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFV 924
I + + + L + L +S + + + G +++
Sbjct: 58 VIAKT----------REDLYEPMLKKLFSLLKKS------EAIPLTQEIAKAFGQMAK-- 99
Query: 925 KYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA 984
++ ++ L + G+ K + NV AL +
Sbjct: 100 -----------EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP------MLM 142
Query: 985 PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILE 1036
S+ + +L + + ++ A + S K + + + ++L
Sbjct: 143 ASIVRDFMSMLSSKNR-EDKLTALNFIEAMGENS--FKYVNPFLPRIINLLH 191
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 36/256 (14%), Positives = 80/256 (31%), Gaps = 53/256 (20%)
Query: 799 SSLIDSALHDDVASVRSAACRAIGVISCF-----PQVSQSAEIIDKFIHAVEINTHDPLV 853
+ ++R A A+ ++ + + + ++ + D
Sbjct: 86 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED--- 142
Query: 854 SVRITASWALANICDSIRHCIDDFAFKPSI-DSNANSHLMASLTES-----------AL- 900
++ + L N+ D K ++ + + LM E AL
Sbjct: 143 -LQQVIASVLRNLS-----WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196
Query: 901 NLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASL-------------------GDSRWL 941
NL+ + K++ G L+ V + + +
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256
Query: 942 ERIVQA-----LVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996
+ + + L+ + + ++ + N C L NL + E + W S+L L+
Sbjct: 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-WDMGAVSMLKNLIH 315
Query: 997 DSSNFKIRIQAAAALA 1012
S + I + +AAAL
Sbjct: 316 -SKHKMIAMGSAAALR 330
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 31/233 (13%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS----------AEIIDKFIHAVEIN 847
+ + A + +S + + AE++ +
Sbjct: 34 MDQDKNPMPAPVE-HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 92
Query: 848 THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD 907
+++R A AL N+ D A K ++ S M +L L + +
Sbjct: 93 NDHYSITLRRYAGMALTNLT------FGDVANKATLCSMKG--CMRALVA---QLKSESE 141
Query: 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967
++ L NLS + +L + ++ +++ + +V AL
Sbjct: 142 DLQQVIASVLRNLSW---RADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSAL 195
Query: 968 SNLFLNETINLEDMDWAPSVFSILLLLLR---DSSNFKIRIQAAAALAVPSSV 1017
NL + T N D+ + L+ L ++ I L SS+
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 22/182 (12%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCF-----PQVSQSAEIIDKFIHAVEINTHDPL 852
+ +L++ AL S + A+ +S + + + + +
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231
Query: 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSN 912
+++ + L N+ S ++ + ++N L+ L I SN
Sbjct: 232 LAIIESGGGILRNV--SSLIATNEDHRQILRENNCLQTLLQHLKS-------HSLTIVSN 282
Query: 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972
A L NLS + +L D V L + + + + + AL NL
Sbjct: 283 ACGTLWNLS----ARNPKDQEALWD----MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334
Query: 973 NE 974
N
Sbjct: 335 NR 336
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 21/175 (12%)
Query: 851 PLVSVRITASWALANI--CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD- 907
P+ A L + + RH + + + L D
Sbjct: 44 PVEHQICPAVCVLMKLSFDEEHRHAM--------NELGGLQAIAELLQVDCEMYGLTNDH 95
Query: 908 ---KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVC 964
++ A L NL+ + ++ A+L ++ ++ALV+ + + + +Q +
Sbjct: 96 YSITLRRYAGMALTNLT----FGDVANKATL---CSMKGCMRALVAQLKSESEDLQQVIA 148
Query: 965 RALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSD 1019
L NL +N + L+ + +AL S+
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 19/204 (9%)
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVR 856
+ I + + R AA A G I P+ SQ ++ + + + DP V VR
Sbjct: 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 425
Query: 857 ITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRG 916
TA+W + IC+ + N +A L + + ++ SN
Sbjct: 426 DTAAWTVGRICELLPEAAI------------NDVYLAPLLQCLIEGLSAEPRVASNVCWA 473
Query: 917 LGNLSRFVKYTSSS-----HPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971
+L+ + PA+ S E IVQ L+ + A +
Sbjct: 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES-- 531
Query: 972 LNETINLEDMDWAPSVFSILLLLL 995
L E + D P+V L+++
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIM 555
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 7e-06
Identities = 62/525 (11%), Positives = 145/525 (27%), Gaps = 55/525 (10%)
Query: 602 VLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPA 661
LF L E P + +AL + + + + + + + + V
Sbjct: 219 NLFALAGDEE----PEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVAL 274
Query: 662 KAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIK 721
+A + + + L + G + D +L
Sbjct: 275 EA----CEFWLTLAEQPICKDVLVRHLPKLIPVL-VNGMKYSDIDIILLKGDVEGGSGGD 329
Query: 722 NISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISS---MVRTAAVTCF 778
+ S + S+ + A ++ E++ +PL+ + + +V+ + +
Sbjct: 330 DTISDWNLRKCSAAALDVLANVYRD------ELLPHILPLLKELLFHHEWVVKESGILVL 383
Query: 779 AGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838
I ++ E I + L D A VRS C + + + +
Sbjct: 384 GAIAEGCMQGMIPYLPELI--PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 441
Query: 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTES 898
+ + D V+ A A A + + + + ++++ +L +
Sbjct: 442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL----------AYILDTLVFA 491
Query: 899 ALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVS--CVTTGN 956
+K K +G L+ V L +++ ++ L+ +
Sbjct: 492 ---FSKYQHKNLLILYDAIGTLADSVG-------HHLNKPEYIQMLMPPLIQKWNMLKDE 541
Query: 957 VKVQWNVCRALSNLF--LNETINLEDMDWAPSVFSILLLLLRDSSNFKI----------R 1004
K + + LS++ L +++ L +
Sbjct: 542 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 601
Query: 1005 IQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLE 1064
A + G + +V + P + AL +
Sbjct: 602 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF 661
Query: 1065 EWFKVLCSSLGES-TTHLENENNSVGNQKKEMISKAIRSLIEVYE 1108
+ K + T+L E SV N I + + +
Sbjct: 662 QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ 706
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 23/220 (10%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVS-----QSAEIIDKFIHAVEINTHDPL 852
+ +L+ + L + ++ + +S V+ + + + +
Sbjct: 245 MRALV-AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303
Query: 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSN 912
+ ++A W L+ C + I A + L+ +LT + T I +
Sbjct: 304 LKSVLSALWNLSAHCTENKADI-------CAVDGALAFLVGTLTYRSQTNT---LAIIES 353
Query: 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972
L N+S + T+ H L + +Q L+ + + ++ + N C L NL
Sbjct: 354 GGGILRNVSSLI-ATNEDHRQILRE----NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408
Query: 973 NETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012
+ E + W S+L L+ S + I + +AAAL
Sbjct: 409 RNPKDQEAL-WDMGAVSMLKNLIH-SKHKMIAMGSAAALR 446
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 22/182 (12%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCF-----PQVSQSAEIIDKFIHAVEINTHDPL 852
+ +L++ AL S + A+ +S + + + + +
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347
Query: 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSN 912
+++ + L N+ + + + ++ + +L + +L I SN
Sbjct: 348 LAIIESGGGILRNVSS---LIATNEDHRQIL---RENNCLQTLLQ---HLKSHSLTIVSN 398
Query: 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972
A L NLS + +L D V L + + + + + AL NL
Sbjct: 399 ACGTLWNLS----ARNPKDQEALWD----MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450
Query: 973 NE 974
N
Sbjct: 451 NR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 32/226 (14%)
Query: 806 LHDDVASVRSAACRAIGVISCFPQVSQS----------AEIIDKFIHAVEINTHDPLVSV 855
+ V A + +S + + AE++ + +++
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216
Query: 856 RITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVR 915
R A AL N+ D A K ++ S M +L L + + ++
Sbjct: 217 RRYAGMALTNLT------FGDVANKATLCSMKGC--MRALVA---QLKSESEDLQQVIAS 265
Query: 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNE 974
L NLS S +G V+AL+ C +V AL NL +
Sbjct: 266 VLRNLSWRADVNSKKTLREVG-------SVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 975 TINLEDMDWAPSVFSILLLLLRD---SSNFKIRIQAAAALAVPSSV 1017
T N D+ + L+ L ++ I L SS+
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 15/172 (8%)
Query: 851 PLVSVRITASWALANI--CDSIRHCIDDF-AFKPSIDSNANSHLMASLTESALNLTKDGD 907
P+ A L + + RH +++ + + L L
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE-----LLQVDCEMYGLTNDHYSI 214
Query: 908 KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967
++ A L NL+ + ++ A+L ++ ++ALV+ + + + +Q + L
Sbjct: 215 TLRRYAGMALTNLT----FGDVANKATL---CSMKGCMRALVAQLKSESEDLQQVIASVL 267
Query: 968 SNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSD 1019
NL +N + L+ + +AL S+
Sbjct: 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 49/288 (17%)
Query: 787 FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI 846
+K + + +A + A+ + A+ +++ E +D ++
Sbjct: 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL------CENMDNAADFCQL 80
Query: 847 NTHDPLVS---------VRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTE 897
+ LV +R A+ + ++ + + A L+ L
Sbjct: 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQV-----LGLGALRKLLRLLDR 135
Query: 898 SALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNV 957
D ++ A+ + L R + L+ +
Sbjct: 136 D------ACDTVRVKALFAISCLVR----EQEAGLLQFLR----LDGFSVLMRAMQQQVQ 181
Query: 958 KVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSV 1017
K++ L NL + + + + + L+ L+R + AL
Sbjct: 182 KLKVKSAFLLQNLLVGHPEHKGTL-CSMGMVQQLVALVRTEHS-PFHEHVLGAL------ 233
Query: 1018 SDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEE 1065
+V + L ++R L +Q + EE
Sbjct: 234 -------CSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEE 274
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 3e-05
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 17/155 (10%)
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVR 856
+ ++ + D R AA A G I P Q + + + ++ +D + V+
Sbjct: 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVK 428
Query: 857 ITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRG 916
T +W + I DS+ ID + + ++ L +D K+ +N
Sbjct: 429 ETTAWCIGRIADSVAESID------------PQQHLPGVVQACLIGLQDHPKVATNCSWT 476
Query: 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSC 951
+ NL + + S + +V L+
Sbjct: 477 IINLVEQLAEATPSP-----IYNFYPALVDGLIGA 506
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 9e-05
Identities = 58/497 (11%), Positives = 154/497 (30%), Gaps = 70/497 (14%)
Query: 588 EISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTI 647
I+ + ++ ++ + + SL AL + + + + I
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 648 VFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDK 707
+ I++ A + + V AA+ L +SL I E +
Sbjct: 181 LIAIVQGAQSTETS---------------KAVRLAALNALADSLIFIKNNMEREGERNY- 224
Query: 708 LLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS 767
L+ + E +EDI+ A AF +++ K+ + ++
Sbjct: 225 LMQV----------------VCEATQAEDIEVQAAAFGC----LCKIMSKYYTFMKPYME 264
Query: 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF 827
+ ++L T + + + A +
Sbjct: 265 QAL----------------YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308
Query: 828 PQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887
QS I V N + L N+ S C+ FA + ++
Sbjct: 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA--QNCGNHI 366
Query: 888 NSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQA 947
++ + + N+T D + + AV G++ P + + ++ + + +
Sbjct: 367 LEPVLEFVEQ---NITADNWRNREAAVMAFGSIM--------DGPDKVQRTYYVHQALPS 415
Query: 948 LVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQA 1007
+++ + +++V+ + + + +++ P V L+ L+D ++
Sbjct: 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP----KVAT 471
Query: 1008 AAALAVPSSVSDYGKSFSDV-VQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEW 1066
+ + + V ++ +++ L + F R + ++ +E
Sbjct: 472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531
Query: 1067 FKVLCSSLGESTTHLEN 1083
+ + +T + +
Sbjct: 532 TDTVAETSASISTFVMD 548
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 57/171 (33%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRI 857
+ + D+ VR A+ + E + + ++ + +R
Sbjct: 14 LVPRGS-HMADENKWVRRDVSTALSRM--------GDEAFEPLLESLS----NEDWRIRG 60
Query: 858 TASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRG 916
A+W + N D + +++ L+ L +D ++S A R
Sbjct: 61 AAAWIIGNFQD-----------ERAVE-----PLIKLL--------EDDSGFVRSGAARS 96
Query: 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRAL 967
L +G ER+ A+ TG + L
Sbjct: 97 LEQ---------------IGG----ERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 8e-04
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 19/178 (10%)
Query: 854 SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS-- 911
+RI AL + + FK NA L L S +
Sbjct: 516 PIRILGCRALTRMLIFTNPGL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572
Query: 912 -----NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRA 966
A+ L NL+ +S + + + + NV +Q +
Sbjct: 573 LTDNYEALLALTNLA---SSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629
Query: 967 LSNLFLNETINLEDM-----DWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSD 1019
+SN+ + + F+IL+ LL S+ + + AA A ++
Sbjct: 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVAAIFANIATTIP 686
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1127 | |||
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.75 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.71 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.7 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.7 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.69 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.67 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.66 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.65 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.6 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.59 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.57 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.56 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.56 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.52 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.5 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.5 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.5 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.47 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.43 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.41 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.41 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.41 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.4 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.39 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.35 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.29 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.29 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.29 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.28 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.26 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.25 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.25 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.24 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.23 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.23 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.22 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.22 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.21 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.16 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.13 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.13 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.1 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 99.06 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 99.01 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.01 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.99 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.91 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.89 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.89 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.83 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.78 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.72 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.71 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.68 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.67 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.65 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.64 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.6 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.58 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.57 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.52 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.51 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.49 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.35 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.23 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.18 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.17 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.13 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 98.11 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.1 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.08 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.07 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 97.74 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.73 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.72 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 97.61 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.55 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.43 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.43 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 97.31 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.3 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.13 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.81 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.46 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.36 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.36 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.96 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.77 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.6 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.6 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 95.56 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 94.5 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 94.4 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 93.98 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 90.12 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 90.11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 89.88 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 87.69 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 86.73 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 83.11 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 82.11 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 81.39 |
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-16 Score=191.96 Aligned_cols=512 Identities=12% Similarity=0.125 Sum_probs=299.5
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.||..+..++..|++.++ .+.|+.++|.- ...+.++++.+|.+|+.++..+.+.....+-. +
T Consensus 105 ~vr~~~a~~i~~ia~~~~---~~~wp~ll~~L-------------~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~--~ 166 (852)
T 4fdd_A 105 LIRATVGILITTIASKGE---LQNWPDLLPKL-------------CSLLDSEDYNTCEGAFGALQKICEDSAEILDS--D 166 (852)
T ss_dssp HHHHHHHHHHHHHHHHTT---TTTCTTHHHHH-------------HHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH--C
T ss_pred HHHHHHHHHHHHHHHhcC---ccccHHHHHHH-------------HHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch--h
Confidence 699999999999999873 36898887654 22556788999999999999998774332211 0
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
+ . ...+..+...|+..+.+ .+..+...+++|+..++...|-. + ...++.++..+...+.
T Consensus 167 ~-------~--------~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~-~-~~~~~~~l~~l~~~~~--- 225 (852)
T 4fdd_A 167 V-------L--------DRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQA-L-MLHIDSFIENLFALAG--- 225 (852)
T ss_dssp S-------S--------SSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHH-H-HTSHHHHHHHHHHHHT---
T ss_pred h-------h--------cchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHH-H-HHHHHHHHHHHHHHcC---
Confidence 0 0 01123344445555554 57789999999999888654310 0 1234455555555442
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH 631 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~ 631 (1127)
+. | ..+|..++.||+.++...+..-. ..+ ..++..++... ++....+|.+|+..+..++.
T Consensus 226 -d~-~-~~vr~~a~~~L~~l~~~~~~~~~--~~l--------------~~l~~~l~~~~-~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 226 -DE-E-PEVRKNVCRALVMLLEVRMDRLL--PHM--------------HNIVEYMLQRT-QDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp -CC-C-HHHHHHHHHHHHHHHHHCHHHHG--GGH--------------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTT
T ss_pred -CC-C-HHHHHHHHHHHHHHHHhCHHHHH--HHH--------------HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHhc
Confidence 21 2 24788999999988875432110 000 01222222222 23346799999999999875
Q ss_pred hC--hhhhhhhHHHHHHHHHHHHHhh---------CC-CCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccC
Q 035871 632 NY--PNIMSSYWQQVSTIVFKILKAA---------SP-EVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKG 699 (1127)
Q Consensus 632 ~y--p~l~~~~~~~l~~vl~~~L~~~---------~~-~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g 699 (1127)
+. ...+.+|...+..++.+.+... .. +|.. ++.......+..+|.+.|+.+.+.. |
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~--------~dd~~~~~~vr~~a~~~L~~la~~~----~ 353 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG--------GDDTISDWNLRKCSAAALDVLANVY----R 353 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------------------CCCCHHHHHHHHHHHHHHHH----G
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc--------cccccccchHHHHHHHHHHHHHHhc----c
Confidence 32 2334556666666666555210 00 1100 0000011134455666666553321 0
Q ss_pred ccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHh
Q 035871 700 TEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFA 779 (1127)
Q Consensus 700 ~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa 779 (1127)
...-..++. .+...++++++.+|.+|+.|||
T Consensus 354 ------------------------------------------------~~~~~~l~~-~l~~~l~~~~~~~R~aa~~alg 384 (852)
T 4fdd_A 354 ------------------------------------------------DELLPHILP-LLKELLFHHEWVVKESGILVLG 384 (852)
T ss_dssp ------------------------------------------------GGGHHHHHH-HHHHHHTCSSHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHH
Confidence 000011222 3445678889999999999999
Q ss_pred ccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchH
Q 035871 780 GITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITA 859 (1127)
Q Consensus 780 ~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikA 859 (1127)
.|....-..+. ..-..++.. +..+++|+++.||.+|+++||.+.-+-.-.....|+..+++.++..+.|++..||..|
T Consensus 385 ~i~~~~~~~~~-~~l~~~l~~-l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a 462 (852)
T 4fdd_A 385 AIAEGCMQGMI-PYLPELIPH-LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462 (852)
T ss_dssp HTTTTTHHHHG-GGHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHhcchHHHH-HHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99764433222 123445654 4577899999999999999999863211011234567889999999999999999999
Q ss_pred HHHHHhhhhhhhhccccc----------CCCCCCccc------------------c-cHHHHHHHHHHHH---hhccCCc
Q 035871 860 SWALANICDSIRHCIDDF----------AFKPSIDSN------------------A-NSHLMASLTESAL---NLTKDGD 907 (1127)
Q Consensus 860 AWALGNL~d~L~~~~~~~----------~~~~~~~~~------------------i-s~~lL~~L~e~aL---~a~~D~D 907 (1127)
+|||+|+++........+ .+..+.... + .++.+..++...+ +...|.+
T Consensus 463 ~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~ 542 (852)
T 4fdd_A 463 CSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED 542 (852)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccccc
Confidence 999999997643321100 000000000 0 0000000000000 1112222
Q ss_pred ----------------------------------------------------------hhhhhHHHHHhhhhhccccCCC
Q 035871 908 ----------------------------------------------------------KIKSNAVRGLGNLSRFVKYTSS 929 (1127)
Q Consensus 908 ----------------------------------------------------------KVRsnAvRALGnLl~~l~~~~~ 929 (1127)
.++..+.+++|.+.+.+..+
T Consensus 543 ~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~-- 620 (852)
T 4fdd_A 543 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN-- 620 (852)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh--
Confidence 23444444444443333210
Q ss_pred CCCCCCCChhHH--HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 035871 930 SHPASLGDSRWL--ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQA 1007 (1127)
Q Consensus 930 ~~~~~~g~~~~~--E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~A 1007 (1127)
..... +.+++.+++++.+.+..||=.|..++|.+.+. .+..-.++.+.+.+.|+..+ +..++.||.+|
T Consensus 621 -------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~l~~~lp~l~~~l-~~~~~~v~~~a 690 (852)
T 4fdd_A 621 -------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA--CFQHVKPCIADFMPILGTNL-NPEFISVCNNA 690 (852)
T ss_dssp -------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--CGGGTGGGHHHHHHHHHHTC-CTTSHHHHHHH
T ss_pred -------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHc-CccchHHHHHH
Confidence 00111 35678888888888999999999999998632 11122356678899999999 56789999999
Q ss_pred HHHhcCCCcc--cccCCchHHHHHHHHHHHHH
Q 035871 1008 AAALAVPSSV--SDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1008 A~AL~~p~~R--~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+.|+|....+ .++..+...+...|+..|++
T Consensus 691 ~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~ 722 (852)
T 4fdd_A 691 TWAIGEISIQMGIEMQPYIPMVLHQLVEIINR 722 (852)
T ss_dssp HHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCC
Confidence 9999854322 13455667788888777754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-16 Score=191.34 Aligned_cols=502 Identities=11% Similarity=0.071 Sum_probs=290.3
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.||+.|...|. +.+..+|..+-|+... ..+..|+.. +.|+++.+|..++.+++.|.... +. .+
T Consensus 63 ~vR~~a~~~Lk-------n~i~~~w~~~~~~~~~----~ik~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~---~~--~~ 125 (852)
T 4fdd_A 63 PTRSLSGLILK-------NNVKAHFQNFPNGVTD----FIKSECLNN-IGDSSPLIRATVGILITTIASKG---EL--QN 125 (852)
T ss_dssp HHHHHHHHHHH-------HHTTTSGGGCCHHHHH----HHHHHHHTT-TTCSSHHHHHHHHHHHHHHHHHT---TT--TT
T ss_pred HHHHHHHHHHH-------HHHHHccCCCCHHHHH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhc---Cc--cc
Confidence 69999999994 3444589876444321 134556665 56999999999999999886542 10 00
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
- -++-..|...++.+ +..+....+.|+..++...|+.- ..+.+...++.+.+.+....
T Consensus 126 w--------------------p~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~-~~~~~~~~~~~il~~l~~~l 183 (852)
T 4fdd_A 126 W--------------------PDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEIL-DSDVLDRPLNIMIPKFLQFF 183 (852)
T ss_dssp C--------------------TTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHH-HHCSSSSCHHHHHHHHTTTT
T ss_pred c--------------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHh-chhhhcchHHHHHHHHHHHh
Confidence 0 01222334455553 45677788889999988887641 11111112333334444433
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH 631 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~ 631 (1127)
.+. + ..+|.+|+.+|..++...+. ... +....++..+++... +....+|..|+++|..++.
T Consensus 184 ~~~-~-~~vR~~A~~aL~~~~~~~~~--~~~--------------~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 184 KHS-S-PKIRSHAVACVNQFIISRTQ--ALM--------------LHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp TCS-S-HHHHHHHHHHHHTTTTTTCH--HHH--------------TSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred cCC-C-HHHHHHHHHHHHHHHhcccH--HHH--------------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 332 2 35889999999877754321 110 011124444544432 3456899999999999999
Q ss_pred hChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCC
Q 035871 632 NYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDN 711 (1127)
Q Consensus 632 ~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~ 711 (1127)
.+|..+.+|...+...+.++++.. .+.+...|+..+..+.+.. ... +.+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~--------------------~~~vr~~a~e~l~~l~~~~-------~~~--~~~-- 293 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQ--------------------DENVALEACEFWLTLAEQP-------ICK--DVL-- 293 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCS--------------------SHHHHHHHHHHHHHHTTST-------THH--HHH--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCC--------------------cHHHHHHHHHHHHHHhcch-------hHH--HHH--
Confidence 999999999887777777665321 1245555655554331100 000 000
Q ss_pred CCcchhhhhhccCCCCcccccchhhhhhhhhhh-h-c----chhhhHHHHHhhHHHHHcc----CChhHHHHHHHHHhcc
Q 035871 712 PFTSDCIRIKNISSAPLYEQESSEDIKESAKAF-Q-S----GSEQWSEMIEKHMPLILQH----ISSMVRTAAVTCFAGI 781 (1127)
Q Consensus 712 ~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~-l----~~~~W~~iie~~Lp~~l~d----~~~~VRaaAc~cLa~I 781 (1127)
.|.+. .-+|.+ + + ....|.. .-...--.+ .+..+|.+|++||+.+
T Consensus 294 --------------~~~~~--------~l~p~ll~~l~~~e~d~~~~~---~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 294 --------------VRHLP--------KLIPVLVNGMKYSDIDIILLK---GDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp --------------TTTHH--------HHHHHHHHHTSCCHHHHHHHH---C------------CCCCHHHHHHHHHHHH
T ss_pred --------------HHHHH--------HHHHHHHHHcCCcHhHHHHhc---CCcccccccccccccchHHHHHHHHHHHH
Confidence 00000 000000 0 0 0000110 000000000 3457899999999987
Q ss_pred chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHH
Q 035871 782 TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASW 861 (1127)
Q Consensus 782 gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAW 861 (1127)
... ++++-...++. .+...++|+++.||.+|+++||.++-...- .-..++..+++.++..+.|++..||..|+|
T Consensus 349 a~~----~~~~~~~~l~~-~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~ 422 (852)
T 4fdd_A 349 ANV----YRDELLPHILP-LLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSITCW 422 (852)
T ss_dssp HHH----HGGGGHHHHHH-HHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHh----ccHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 532 34433444555 345667899999999999999999743221 111356888999999999999999999999
Q ss_pred HHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhH
Q 035871 862 ALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRW 940 (1127)
Q Consensus 862 ALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~ 940 (1127)
+||++++.+..... . ..-..++..|+ +..+|++ +||.+|++|||++.......- ...
T Consensus 423 ~l~~l~~~~~~~~~----~-----~~~~~ll~~L~----~~L~d~~~~vr~~a~~aL~~l~~~~~~~l---------~~~ 480 (852)
T 4fdd_A 423 TLSRYAHWVVSQPP----D-----TYLKPLMTELL----KRILDSNKRVQEAACSAFATLEEEACTEL---------VPY 480 (852)
T ss_dssp HHHHTHHHHHHSCT----T-----TTHHHHHHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHGGGG---------GGG
T ss_pred HHHHHHHHhccchH----H-----HHHHHHHHHHH----HHHhCCCHHHHHHHHHHHHHHHHHhhHhh---------HhH
Confidence 99999987653211 1 22233444444 3455544 899999999999987665421 124
Q ss_pred HHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH---HhcCCChHHHHHHHHHhcCCCc-
Q 035871 941 LERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL---LRDSSNFKIRIQAAAALAVPSS- 1016 (1127)
Q Consensus 941 ~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l---l~~~~NFKVRi~AA~AL~~p~~- 1016 (1127)
.+.+++.|++++++.+.+..-.+..|+|.+...-.-.....++.+.+.+.|++. +.+ ..-++| .+..+|+....
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d-~~~~~~-~~~~~l~~i~~~ 558 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD-EDKDLF-PLLECLSSVATA 558 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT-TCTTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccc-ccHHHH-HHHHHHHHHHHH
Confidence 688999999999877767666677778777632111111223456677777643 322 223344 56555543221
Q ss_pred -ccccCCchHHHHHHHHHHHHH
Q 035871 1017 -VSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1017 -R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
...+-.+.+.+...++..++.
T Consensus 559 ~g~~~~~~~~~i~~~~~~~l~~ 580 (852)
T 4fdd_A 559 LQSGFLPYCEPVYQRCVNLVQK 580 (852)
T ss_dssp HGGGGHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHH
Confidence 112223445566656666554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=177.39 Aligned_cols=495 Identities=14% Similarity=0.133 Sum_probs=296.1
Q ss_pred hhhHHHHHHHHHHHHhhC-CccccccccccccCCCCCCCCcCccchhhhhhcCC-ChhHHHHHHHHHHHHhcCCchhhhh
Q 035871 391 SKVRVAALVCLQDLCRAD-PKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDP-CLKARMASASTLAAMLDGPSTVFLQ 468 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~-~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dp-s~KvR~aA~~~LsaLL~gsk~~llq 468 (1127)
.+||..+..+|..|++.+ |. +.|+.++|.- +. .+.++ ++.+|..|+.++..+.+...+.
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~---~~w~~ll~~L------------~~-~l~~~~~~~~r~~al~~l~~l~~~~~~~--- 169 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPH---GAWPELMKIM------------VD-NTGAEQPENVKRASLLALGYMCESADPQ--- 169 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHH------------HH-HTSTTSCHHHHHHHHHHHHHHHHTSSTT---
T ss_pred hHHHHHHHHHHHHHHHhhCcc---cccHHHHHHH------------HH-HHhcCCCHHHHHHHHHHHHHHHHcCChh---
Confidence 468999999999999874 32 4798888653 22 34556 8899999999999888753211
Q ss_pred hhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhHhcccCCCCCC-CchHHHHHHHHHH
Q 035871 469 VAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRE-THDRLLASLFKILMPLISCTPYSRMPG-ELMPNLIISLRAR 546 (1127)
Q Consensus 469 ~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E-~~~~vLtqlLKcLa~LVq~TPY~RL~~-~Ll~~vv~~l~~~ 546 (1127)
.+ .|.++ +..+...|+..+.++ .+..+...++||+..++....- .+.. ...+.++..+...
T Consensus 170 -------~~--~~~~~-------~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~~ll~~l~~~ 232 (861)
T 2bpt_A 170 -------SQ--ALVSS-------SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-NMEREGERNYLMQVVCEA 232 (861)
T ss_dssp -------SS--TTGGG-------HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-HHTSHHHHHHHHHHHHHH
T ss_pred -------hh--HHHHH-------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HccChhHHHHHHHHHHHH
Confidence 01 22222 233445556667775 3788999999999998754321 0110 0112344443333
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHH
Q 035871 547 IEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQAL 626 (1127)
Q Consensus 547 i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL 626 (1127)
+. + .+ ..++..++.||+.++...+.. +...+.+ .++..++.. -.+....+|.+|++++
T Consensus 233 ~~----~-~~-~~~r~~a~~~l~~l~~~~~~~--~~~~l~~-------------~l~~~~~~~-~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 233 TQ----A-ED-IEVQAAAFGCLCKIMSKYYTF--MKPYMEQ-------------ALYALTIAT-MKSPNDKVASMTVEFW 290 (861)
T ss_dssp HT----C-SC-HHHHHHHHHHHHHHHHHHGGG--CHHHHHH-------------THHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred hc----C-CC-HHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------------HHHHHHHHH-HcCCcHHHHHHHHHHH
Confidence 21 1 22 347888999998887654321 0000000 011111111 1234468999999999
Q ss_pred HHHHhhCh-----------------hhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHH
Q 035871 627 RAVSHNYP-----------------NIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDE 689 (1127)
Q Consensus 627 ~ala~~yp-----------------~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE 689 (1127)
..++...+ .....+...+...+...|+....++ ++.. ..+..+|.+.|+.
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~----------~d~~---~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDP----------EDDD---WNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccc----------cccc---CcHHHHHHHHHHH
Confidence 99887632 2334444444444444443221100 0100 1344556666665
Q ss_pred HHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChh
Q 035871 690 SLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSM 769 (1127)
Q Consensus 690 ~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~ 769 (1127)
+.... | ......+++ .+...+++.+..
T Consensus 358 l~~~~----~------------------------------------------------~~~~~~l~~-~l~~~l~~~~~~ 384 (861)
T 2bpt_A 358 FAQNC----G------------------------------------------------NHILEPVLE-FVEQNITADNWR 384 (861)
T ss_dssp HHHHH----G------------------------------------------------GGGHHHHHH-HHHHHTTCSSHH
T ss_pred HHHHc----c------------------------------------------------HhHHHHHHH-HHHHHcCCCChh
Confidence 53321 0 000112222 344566788899
Q ss_pred HHHHHHHHHhccchhHH-hhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc--cccccchHHHHHHHHHHHH
Q 035871 770 VRTAAVTCFAGITSSVF-FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF--PQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 770 VRaaAc~cLa~Igs~~f-~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~--p~L~~d~~fv~~ai~aLl~ 846 (1127)
+|.+|+.|||.|....- ..+ ...-..++.. +...++|+++.||.+|+++||.++.+ +.+. ...++...++.++.
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~-~~~l~~il~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQR-TYYVHQALPS-ILNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-TTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHH-HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC-CHHHHHHHHHHHHH
Confidence 99999999999874321 111 1122345554 44778999999999999999999732 1111 13456888999999
Q ss_pred hcCCCCcchhchHHHHHHhhhhhhhh-cccccCCCCCCcccccHHHHHHHHHHHHhhcc--CC-chhhhhHHHHHhhhhh
Q 035871 847 NTHDPLVSVRITASWALANICDSIRH-CIDDFAFKPSIDSNANSHLMASLTESALNLTK--DG-DKIKSNAVRGLGNLSR 922 (1127)
Q Consensus 847 ~l~D~~~~VRikAAWALGNL~d~L~~-~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~--D~-DKVRsnAvRALGnLl~ 922 (1127)
.+.|+ ..||..|+|+|+++++.+.. ... .+. ..-+.++..| ++..+ |. +.||..|++++|.+..
T Consensus 462 ~l~~~-~~v~~~a~~al~~l~~~~~~~~~~--~l~-----~~~~~il~~L----~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 462 GLQDH-PKVATNCSWTIINLVEQLAEATPS--PIY-----NFYPALVDGL----IGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHTSC-HHHHHHHHHHHHHHHHHHSSSSSC--GGG-----GGHHHHHHHH----HHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HhccC-hHHHHHHHHHHHHHHHhcccccch--hhH-----HHHHHHHHHH----HHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 99887 99999999999999987541 000 011 1123334444 33444 43 5899999999999986
Q ss_pred ccccCCCCCCCCCCChhHHHHHHHHHHHhhcc---------------CCccchhhHHHHHHhhhccccccccCCCchhHH
Q 035871 923 FVKYTSSSHPASLGDSRWLERIVQALVSCVTT---------------GNVKVQWNVCRALSNLFLNETINLEDMDWAPSV 987 (1127)
Q Consensus 923 ~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~---------------~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v 987 (1127)
....+ .....+.+++.+++.+.. ....+|-.++.+|+++...-. ..-.++.+.+
T Consensus 530 ~~~~~---------~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l 598 (861)
T 2bpt_A 530 YATDT---------VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP--SSVEPVADML 598 (861)
T ss_dssp HCCGG---------GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHH
T ss_pred Hcchh---------hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHH
Confidence 65432 122355566666665542 245688999999999985421 1223577899
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHhcCCCc--ccccCCchHHHHHHHHHHHH
Q 035871 988 FSILLLLLRDSSNF-KIRIQAAAALAVPSS--VSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 988 ~~~Ll~ll~~~~NF-KVRi~AA~AL~~p~~--R~~yG~~~~~V~~~L~~aLe 1036 (1127)
++.++..+.+ .+. .||..+..+++.... ..++..+++.++..|...|+
T Consensus 599 ~~~l~~~l~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 649 (861)
T 2bpt_A 599 MGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN 649 (861)
T ss_dssp HHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999965 445 899999888864321 12344456777777777774
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-15 Score=172.24 Aligned_cols=446 Identities=12% Similarity=0.060 Sum_probs=270.2
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhcCCch-----hhhhh----hhhccc-cCCccccc---chHHH-HHHHHHHHHHHHHH
Q 035871 437 TCLLFDPCLKARMASASTLAAMLDGPST-----VFLQV----AEYKES-IKCGSFMP---LSTSY-GHIIMQLHNGIIYL 502 (1127)
Q Consensus 437 t~iL~Dps~KvR~aA~~~LsaLL~gsk~-----~llq~----AE~~es-~~~~SFTs---fS~tL-g~~l~eLHr~Ll~a 502 (1127)
..++.|+++.+|.+|+..|..+.....+ ++++. +++... .+..++.- +...+ ..+..++-..|...
T Consensus 93 ~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l 172 (588)
T 1b3u_A 93 ESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNL 172 (588)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3456899999999999999999876432 12221 111000 00011111 11111 12334555555555
Q ss_pred HhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHH
Q 035871 503 IQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVK 582 (1127)
Q Consensus 503 L~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~ 582 (1127)
+.+ .++.+...++++++.++...+-+. ..+.++..+...+ .+. + ..+|.+|+.+|+.+....++.. ..
T Consensus 173 ~~d-~~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~----~d~-~-~~vr~~a~~~l~~l~~~~~~~~-~~ 240 (588)
T 1b3u_A 173 CSD-DTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLA----SDE-Q-DSVRLLAVEACVNIAQLLPQED-LE 240 (588)
T ss_dssp HTC-SCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHH----TCS-C-HHHHTTHHHHHHHHHHHSCHHH-HH
T ss_pred hCC-CCHHHHHHHHHHHHHHHHHhcHHh----HHHHHHHHHHHHh----cCC-c-HHHHHHHHHHHHHHHHhCCHHH-HH
Confidence 554 577899999999999987754211 1122222222222 222 2 2477788888887766443211 11
Q ss_pred HHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCccc
Q 035871 583 QMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAK 662 (1127)
Q Consensus 583 ~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~ 662 (1127)
. .++..+.++. .+....+|..|.+.|..++...+.- .+...+...+.+++++ ++
T Consensus 241 ~-----------------~~~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d---~~--- 294 (588)
T 1b3u_A 241 A-----------------LVMPTLRQAA-EDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKD---CE--- 294 (588)
T ss_dssp H-----------------HTHHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTC---SS---
T ss_pred H-----------------HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCC---Cc---
Confidence 0 1222222232 2344579999999999988754321 1223344555555532 11
Q ss_pred ccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhh
Q 035871 663 AWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAK 742 (1127)
Q Consensus 663 ~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~ 742 (1127)
..+..+|++.|.++.... |.. ..
T Consensus 295 --------------~~vr~~a~~~l~~~~~~~----~~~---------------------------~~------------ 317 (588)
T 1b3u_A 295 --------------AEVRAAASHKVKEFCENL----SAD---------------------------CR------------ 317 (588)
T ss_dssp --------------HHHHHHHHHHHHHHHHTS----CTT---------------------------TH------------
T ss_pred --------------HHHHHHHHHHHHHHHHHh----Chh---------------------------hh------------
Confidence 134555666666543211 000 00
Q ss_pred hhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-HHHHHHHHHhhhccCCCHhHHHHHHHHH
Q 035871 743 AFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-QEFIISSLIDSALHDDVASVRSAACRAI 821 (1127)
Q Consensus 743 ~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-q~~~i~~Lll~~~~De~~~VRaAA~RAL 821 (1127)
...++..++. .+...++|+++.||.+++.+|+.+... ++++. ...++. ++..+++|+++.||.+|+.+|
T Consensus 318 ----~~~~~~~l~p-~l~~~l~d~~~~vR~~a~~~l~~l~~~----~~~~~~~~~l~p-~l~~~l~d~~~~Vr~~a~~~l 387 (588)
T 1b3u_A 318 ----ENVIMSQILP-CIKELVSDANQHVKSALASVIMGLSPI----LGKDNTIEHLLP-LFLAQLKDECPEVRLNIISNL 387 (588)
T ss_dssp ----HHHHHHTHHH-HHHHHHTCSCHHHHHHHHTTGGGGHHH----HCHHHHHHHTHH-HHHHHHTCSCHHHHHHHHTTC
T ss_pred ----hhHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHH----hhHhHHHHHHHH-HHHHHhCCCchHHHHHHHHHH
Confidence 0012333333 344567899999999999999998532 22221 233444 445778999999999999999
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh
Q 035871 822 GVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN 901 (1127)
Q Consensus 822 Gvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~ 901 (1127)
|.++.. ++ ...+...+++.+...++|++..||..++.+|++++..+... .+.+.++..+ ++
T Consensus 388 ~~l~~~--~~-~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------------~~~~~l~~~l----~~ 448 (588)
T 1b3u_A 388 DCVNEV--IG-IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE------------FFDEKLNSLC----MA 448 (588)
T ss_dssp HHHHHH--SC-HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG------------GCCHHHHHHH----HH
T ss_pred HHHHHh--cC-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH------------HHHHHHHHHH----HH
Confidence 998632 11 12234667788888899999999999999999999875421 2223333333 33
Q ss_pred hccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC
Q 035871 902 LTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED 980 (1127)
Q Consensus 902 a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~ 980 (1127)
..+|.+ .||..|+++||.+...+..+ ...+.+++.|.+.+.+.+..||-.|+.++|.+... + +.
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~--~--~~ 513 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGKE-----------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--C--GQ 513 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCHH-----------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--H--HH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCch-----------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--c--CH
Confidence 456766 69999999999998554321 12467888888888899999999999999998743 1 11
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCch
Q 035871 981 MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSF 1024 (1127)
Q Consensus 981 ~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~ 1024 (1127)
....+.+++.|...+. +++-.||.+|+.+|+.... .+|..+
T Consensus 514 ~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~--~~~~~~ 554 (588)
T 1b3u_A 514 DITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGP--ILDNST 554 (588)
T ss_dssp HHHHHHTHHHHHHGGG-CSCHHHHHHHHHHHHHHGG--GSCHHH
T ss_pred HHHHHHHHHHHHhhCC-CCCchHHHHHHHHHHHHHH--Hhchhh
Confidence 1245678899999985 5788999999999984432 345443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-15 Score=175.05 Aligned_cols=441 Identities=13% Similarity=0.095 Sum_probs=272.8
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
.+|.+|..+|..++...+. .++..++ +++..++.|+++.||.+|++.+..+.+....-
T Consensus 141 ~~R~~a~~~l~~~~~~~~~---~~~~~l~-------------~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~------ 198 (588)
T 1b3u_A 141 TSRTSACGLFSVCYPRVSS---AVKAELR-------------QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD------ 198 (588)
T ss_dssp HHHHHHGGGHHHHTTTSCH---HHHHHHH-------------HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH------
T ss_pred HHHHHHHHHHHHHHHhcCH---HHHHHHH-------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH------
Confidence 5788888888777654331 1222222 23445678999999999999999887653220
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
....++-..|...+.++ +..+...++++++.+....|-+ .+.+.++..+...+.
T Consensus 199 ------------------~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~--- 252 (588)
T 1b3u_A 199 ------------------NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE----DLEALVMPTLRQAAE--- 252 (588)
T ss_dssp ------------------HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH----HHHHHTHHHHHHHHT---
T ss_pred ------------------hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHcc---
Confidence 00112223344555554 4668888999999998876521 122333333333221
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHh
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSH 631 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~ 631 (1127)
+. + ..+|.++..+|+.+...-++.. +.. .++..+++... +....+|..|.+.|..++.
T Consensus 253 -d~-~-~~vR~~a~~~l~~l~~~~~~~~-~~~-----------------~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 253 -DK-S-WRVRYMVADKFTELQKAVGPEI-TKT-----------------DLVPAFQNLMK-DCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp -CS-S-HHHHHHHHHTHHHHHHHHCHHH-HHH-----------------THHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred -CC-C-HHHHHHHHHHHHHHHHHhCccc-chh-----------------HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH
Confidence 22 2 2378888888888765322211 000 12222333322 3446799999999999998
Q ss_pred hChhhhh--hhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCcccccccccc
Q 035871 632 NYPNIMS--SYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLL 709 (1127)
Q Consensus 632 ~yp~l~~--~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~ 709 (1127)
..+.-.. .++..+...+.+++++. + .+++.++++.|.++....
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~---~-----------------~~vR~~a~~~l~~l~~~~--------------- 355 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDA---N-----------------QHVKSALASVIMGLSPIL--------------- 355 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCS---C-----------------HHHHHHHHTTGGGGHHHH---------------
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCC---C-----------------HHHHHHHHHHHHHHHHHh---------------
Confidence 7754321 34555555555554211 0 144444444433221110
Q ss_pred CCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhc
Q 035871 710 DNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSL 789 (1127)
Q Consensus 710 d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~L 789 (1127)
+.+ .+...++ ..+-..+.|+++.||.+++.+|+.+... +
T Consensus 356 --------------------~~~----------------~~~~~l~-p~l~~~l~d~~~~Vr~~a~~~l~~l~~~----~ 394 (588)
T 1b3u_A 356 --------------------GKD----------------NTIEHLL-PLFLAQLKDECPEVRLNIISNLDCVNEV----I 394 (588)
T ss_dssp --------------------CHH----------------HHHHHTH-HHHHHHHTCSCHHHHHHHHTTCHHHHHH----S
T ss_pred --------------------hHh----------------HHHHHHH-HHHHHHhCCCchHHHHHHHHHHHHHHHh----c
Confidence 000 0001111 1333567888999999999999987542 2
Q ss_pred chhH-HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 790 LKET-QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 790 p~~~-q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+.+. ...++..+ ..+.+|+++.||.+++.+||.+.. .++.+ .|....++.++..+.|++..||..|+.+||+++.
T Consensus 395 ~~~~~~~~~lp~l-~~~~~d~~~~vr~~~~~~l~~l~~--~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 395 GIRQLSQSLLPAI-VELAEDAKWRVRLAIIEYMPLLAG--QLGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470 (588)
T ss_dssp CHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHH--HHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHhcCCCchHHHHHHHHHHHHHH--HcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 2221 23455533 466799999999999999999862 11111 1234677888889999999999999999999998
Q ss_pred hhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHH
Q 035871 869 SIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQA 947 (1127)
Q Consensus 869 ~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~a 947 (1127)
.+... ...+.++..| ....+|.+ .||..|+.++|.+...+..+ ...+.+++.
T Consensus 471 ~~~~~------------~~~~~llp~l----~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~~~~~~~~ 523 (588)
T 1b3u_A 471 KFGKE------------WAHATIIPKV----LAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITTKHMLPT 523 (588)
T ss_dssp HHCHH------------HHHHHTHHHH----HHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHTHHH
T ss_pred HhCch------------hHHHHHHHHH----HHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHH
Confidence 75321 1111223333 33445544 79999999999998654432 246788999
Q ss_pred HHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 948 LVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 948 Llk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
|++.+++.+..||.+|+.+||.+...- +.....+.+.+.|..+ .++++..||..|+.||+..
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~~~----~~~~~~~~~~p~l~~l-~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGPIL----DNSTLQSEVKPILEKL-TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGGGS----CHHHHHHHHHHHHHHH-TTCSSHHHHHHHHHHHHHT
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHh----chhhhHHHHHHHHHHH-cCCCchhHHHHHHHHHHHh
Confidence 999999999999999999999998531 1111124567777775 5789999999999999743
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-13 Score=167.61 Aligned_cols=500 Identities=13% Similarity=0.143 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCC--ChhHHHHHHHHHHHHhcCCchhhhhhhhh
Q 035871 395 VAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDP--CLKARMASASTLAAMLDGPSTVFLQVAEY 472 (1127)
Q Consensus 395 ~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dp--s~KvR~aA~~~LsaLL~gsk~~llq~AE~ 472 (1127)
..+..++..|++.+. ..++|+.++|.- +. .+.++ ++.+|..|+.++..+.+...+-.
T Consensus 107 ~~~~~~l~~i~~~~~--~~~~w~~ll~~l------------~~-~l~~~~~~~~~r~~al~~l~~l~~~~~~~~------ 165 (876)
T 1qgr_A 107 SSASQCVAGIACAEI--PVNQWPELIPQL------------VA-NVTNPNSTEHMKESTLEAIGYICQDIDPEQ------ 165 (876)
T ss_dssp CHHHHHHHHHHHHHG--GGTCCTTHHHHH------------HH-HHHCTTCCHHHHHHHHHHHHHHHHHSCHHH------
T ss_pred HHHHHHHHHHHHhhC--cccccHHHHHHH------------HH-HHhCCCCCHHHHHHHHHHHHHHHHhcCHhh------
Confidence 567888888888631 136787777643 23 44677 89999999999998876421110
Q ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHhHhcccCCCCCCC-chHHHHHHHHHHHhhc
Q 035871 473 KESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRET-HDRLLASLFKILMPLISCTPYSRMPGE-LMPNLIISLRARIEEG 550 (1127)
Q Consensus 473 ~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~-~~~vLtqlLKcLa~LVq~TPY~RL~~~-Ll~~vv~~l~~~i~~~ 550 (1127)
| ...+..+...|...+..+. +..+...++||+..++...+-+ +... ....++..+...+
T Consensus 166 --------~-------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~~il~~l~~~~--- 226 (876)
T 1qgr_A 166 --------L-------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-FDKESERHFIMQVVCEAT--- 226 (876)
T ss_dssp --------H-------GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH-HTSHHHHHHHHHHHHHHT---
T ss_pred --------H-------HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHc---
Confidence 1 1223444555667777763 6778999999999988653210 1110 1112344333322
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVS 630 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala 630 (1127)
.+ .| ..++.+++.||+.++...+..- ...+ . ..++..++... .+....+|.+|++++..++
T Consensus 227 -~~-~~-~~vr~~a~~~l~~l~~~~~~~~--~~~~-----------~--~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 227 -QC-PD-TRVRVAALQNLVKIMSLYYQYM--ETYM-----------G--PALFAITIEAM-KSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp -TC-SS-HHHHHHHHHHHHHHHHHSGGGC--HHHH-----------T--TTHHHHHHHHH-TCSSHHHHHHHHHHHHHHH
T ss_pred -CC-CC-HHHHHHHHHHHHHHHHHhHHHH--HHHH-----------H--HHHHHHHHHHh-cCCchHHHHHHHHHHHHHH
Confidence 12 22 2478899999999887654221 0000 0 01222222222 2334578999999999888
Q ss_pred hhChhh---------------------hhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHH
Q 035871 631 HNYPNI---------------------MSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDE 689 (1127)
Q Consensus 631 ~~yp~l---------------------~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE 689 (1127)
...+.+ ...+...+...+.+.|.... +|.. ++. ..+..+|.+.|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~-~d~~--------~~~----~~~r~~a~~~l~~ 354 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD-ENDD--------DDD----WNPCKAAGVCLML 354 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC-SSCC--------TTC----CCHHHHHHHHHHH
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc-cccc--------ccc----cHHHHHHHHHHHH
Confidence 664221 11122222222222221100 0000 000 0223333444433
Q ss_pred HHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChh
Q 035871 690 SLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSM 769 (1127)
Q Consensus 690 ~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~ 769 (1127)
+.... +......++. .+...+.++++.
T Consensus 355 l~~~~----------------------------------------------------~~~~~~~~l~-~l~~~l~~~~~~ 381 (876)
T 1qgr_A 355 LATCC----------------------------------------------------EDDIVPHVLP-FIKEHIKNPDWR 381 (876)
T ss_dssp HHHHH----------------------------------------------------GGGGHHHHHH-HHHHHTTCSSHH
T ss_pred HHHHC----------------------------------------------------cHhhHHHHHH-HHHHHccCCChH
Confidence 32111 0011122332 344566788999
Q ss_pred HHHHHHHHHhccchhHH-hhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHh
Q 035871 770 VRTAAVTCFAGITSSVF-FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQSAEIIDKFIHAVEIN 847 (1127)
Q Consensus 770 VRaaAc~cLa~Igs~~f-~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~ 847 (1127)
+|.+|+.||+.|....- ..+. ..-..++.. ++.+++|+++.||.+|+++||.++. ++.--....++..+++.++..
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~-~~~~~~l~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLK-PLVIQAMPT-LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHH-HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 99999999999875321 1111 122335553 4467799999999999999999973 222111234678899999999
Q ss_pred cCCCCcchhchHHHHHHhhhhhhhhcc---------cccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 848 THDPLVSVRITASWALANICDSIRHCI---------DDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 848 l~D~~~~VRikAAWALGNL~d~L~~~~---------~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
++|+ ..||..|+|+|+++++...... ....+.+ .-+.++..|++..-....++..+|..+..+||
T Consensus 460 l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~ 533 (876)
T 1qgr_A 460 LSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS-----SFELIVQKLLETTDRPDGHQNNLRSSAYESLM 533 (876)
T ss_dssp TTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT-----THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHH
T ss_pred HcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH-----hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHH
Confidence 9986 8999999999999998765110 0001121 22344555544321111123479999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-----------CC----ccchhhHHHHHHhhhccccccccCCCc
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-----------GN----VKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-----------~n----~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
.+.+....+ ...+.+..++.+++.+.. .+ ..+|-++|.+|+.+...-.- ..-.++
T Consensus 534 ~l~~~~~~~---------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~ 603 (876)
T 1qgr_A 534 EIVKNSAKD---------CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQI 603 (876)
T ss_dssp HHHHTCCST---------THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTT
T ss_pred HHHHHCchh---------hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHH
Confidence 998765431 233567777777777642 11 45788999999998754210 011256
Q ss_pred hhHHHHHHHHHHhcCCC-hHHHHHHHHHhcCCCc--ccccCCchHHHHHHHHHHHHH
Q 035871 984 APSVFSILLLLLRDSSN-FKIRIQAAAALAVPSS--VSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~~~N-FKVRi~AA~AL~~p~~--R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.+.+++.|+.++.+... -.||..|..+++.... ...+..++..++..+...|++
T Consensus 604 ~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 78899999999976532 3799999999874332 234555677788888888875
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-16 Score=165.02 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=152.3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|...|.|+++.+|..|+.+|+.+|... ++..| ..+++|+++.||..|+++||.+.. +...+.
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~~-----------~~~~L-~~~l~d~~~~vR~~A~~aL~~l~~------~~~~~~ 89 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQD-----------AVRLA-IEFCSDKNYIRRDIGAFILGQIKI------CKKCED 89 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCHH-----------HHHHH-HHHHTCSSHHHHHHHHHHHHHSCC------CTTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCch-----------HHHHH-HHHHcCCCHHHHHHHHHHHHHhcc------ccccch
Confidence 445778999999999999999998532 33333 467799999999999999999842 111123
Q ss_pred HHHHHHH-HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 839 KFIHAVE-INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 839 ~ai~aLl-~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..++.+. ..++|++..||..|+|+||+++.... ...+..+..|.+ +.+|.+ .||..|+++
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--------------~~~~~~~~~L~~----~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNP--------------IYSPKIVEQSQI----TAFDKSTNVRRATAFA 151 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--------------GGHHHHHHHHHH----HTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--------------cccHHHHHHHHH----HhhCCCHHHHHHHHHH
Confidence 4444444 24689999999999999999985311 112233444433 345555 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||+++ + +.+++.|++.+.+.+..||+.|++|||++..+ .+.+++.|+.++.
T Consensus 152 L~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 152 ISVIN---------------D----KATIPLLINLLKDPNGDVRNWAAFAININKYD----------NSDIRDCFVEMLQ 202 (280)
T ss_dssp HHTC----------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTT
T ss_pred HHhcC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC----------cHHHHHHHHHHhc
Confidence 99984 1 23678899999999999999999999998632 2568899999995
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+++..||..|+.+|+ .+|.. .++..|...|++
T Consensus 203 -d~~~~vR~~A~~aL~------~~~~~--~~~~~L~~~l~d 234 (280)
T 1oyz_A 203 -DKNEEVRIEAIIGLS------YRKDK--RVLSVLCDELKK 234 (280)
T ss_dssp -CSCHHHHHHHHHHHH------HTTCG--GGHHHHHHHHTS
T ss_pred -CCCHHHHHHHHHHHH------HhCCH--hhHHHHHHHhcC
Confidence 588999999999999 45543 577777777754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-14 Score=172.19 Aligned_cols=517 Identities=15% Similarity=0.170 Sum_probs=304.5
Q ss_pred hhhHHHHHHHHHHHHhhCC----ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhh
Q 035871 391 SKVRVAALVCLQDLCRADP----KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVF 466 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~----K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~l 466 (1127)
..||+.|..+|...++..- ....++|...+|+.... .....|+.. +.++++++|..++++++.|....
T Consensus 55 ~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~---~ik~~ll~~-l~~~~~~vr~~~~~~l~~i~~~~---- 126 (861)
T 2bpt_A 55 LEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKN---QIKTNALTA-LVSIEPRIANAAAQLIAAIADIE---- 126 (861)
T ss_dssp HHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHH---HHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHH---HHHHHHHHH-HCCCchHHHHHHHHHHHHHHHhh----
Confidence 4699999999954433210 01234566534433211 123567775 56788999999999998874431
Q ss_pred hhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCC-CCCCCchHHHHHHHHH
Q 035871 467 LQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYS-RMPGELMPNLIISLRA 545 (1127)
Q Consensus 467 lq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~-RL~~~Ll~~vv~~l~~ 545 (1127)
.+.. . +. ++-..|+..+..+++..+....++++..++...+.+ |.-...++.++..+..
T Consensus 127 -----~p~~-~------w~--------~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~ 186 (861)
T 2bpt_A 127 -----LPHG-A------WP--------ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186 (861)
T ss_dssp -----GGGT-C------CH--------HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHH
T ss_pred -----Cccc-c------cH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHH
Confidence 0000 0 11 122335555666546677778889999888765432 1012345555555544
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHH
Q 035871 546 RIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQA 625 (1127)
Q Consensus 546 ~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQv 625 (1127)
.+.+ ......+|.+++.||+.++..-....+. .. ....++..+.+.. ++....+|..++++
T Consensus 187 ~l~~----~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~-------------~~~~ll~~l~~~~-~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 187 GAQS----TETSKAVRLAALNALADSLIFIKNNMER-EG-------------ERNYLMQVVCEAT-QAEDIEVQAAAFGC 247 (861)
T ss_dssp HHST----TCCCHHHHHHHHHHHHHHGGGCHHHHTS-HH-------------HHHHHHHHHHHHH-TCSCHHHHHHHHHH
T ss_pred hhcC----CCCCHHHHHHHHHHHHHHHHHHHHHccC-hh-------------HHHHHHHHHHHHh-cCCCHHHHHHHHHH
Confidence 4432 2101347889999998876421100000 00 0001222333322 23446899999999
Q ss_pred HHHHHhhChhhhhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccc
Q 035871 626 LRAVSHNYPNIMSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLL 704 (1127)
Q Consensus 626 L~ala~~yp~l~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~ 704 (1127)
|..++..||..+.+|.. .+...+...+.. . .+.+...|+..+..+.+....... . ..
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~---~-----------------~~~vr~~a~~~l~~l~~~~~~~~~-~-~~ 305 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIATMKS---P-----------------NDKVASMTVEFWSTICEEEIDIAY-E-LA 305 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTC---S-----------------SHHHHHHHHHHHHHHHHHHHHHHH-H-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C-----------------cHHHHHHHHHHHHHHHHHHHhhhh-h-hh
Confidence 99999999988877777 665555444321 0 135666677776655443210000 0 00
Q ss_pred cccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHH---Hc-------cCChhHHHHH
Q 035871 705 DDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLI---LQ-------HISSMVRTAA 774 (1127)
Q Consensus 705 ~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~---l~-------d~~~~VRaaA 774 (1127)
+ + ...|..... +-...++.++|.+ +. +.++.+|.+|
T Consensus 306 ~----~-------------~~~~~~~~~-----------------~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 306 Q----F-------------PQSPLQSYN-----------------FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp H----C-------------TTCSCCCCC-----------------HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred h----c-------------cCCchhhHH-----------------HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 0 0 000110000 0011122233333 22 2346899999
Q ss_pred HHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcc
Q 035871 775 VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS 854 (1127)
Q Consensus 775 c~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~ 854 (1127)
+++|+.+... ++.+....++. .+...+.|.++.+|.+|+.+||.++....-..-..++..+++.++..+.|++..
T Consensus 352 ~~~L~~l~~~----~~~~~~~~l~~-~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 352 GACLQLFAQN----CGNHILEPVLE-FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHH----HGGGGHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHH----ccHhHHHHHHH-HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 9999987542 23333344555 345667899999999999999999732210111345677888899999999999
Q ss_pred hhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhcccc---CCCCC
Q 035871 855 VRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKY---TSSSH 931 (1127)
Q Consensus 855 VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~---~~~~~ 931 (1127)
||..|+|+||++++.+..... . ... +..++...++..+|+.+||.+|+.||+++.+.+.. +.+
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~----~----~~~----~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l-- 492 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESID----P----QQH----LPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPI-- 492 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSC----T----TTT----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGG--
T ss_pred HHHHHHHHHHHHHHHhhhhcC----C----HHH----HHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhh--
Confidence 999999999999998653211 0 112 33334444444577788999999999999877652 111
Q ss_pred CCCCCChhHHHHHHHHHHHhhcc--CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC-----------
Q 035871 932 PASLGDSRWLERIVQALVSCVTT--GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS----------- 998 (1127)
Q Consensus 932 ~~~~g~~~~~E~~i~aLlk~l~~--~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~----------- 998 (1127)
....+.+++.|++.+.+ .+..||..|+.|||.+.....- ...+....+++.++..+.+.
T Consensus 493 ------~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~ 564 (861)
T 2bpt_A 493 ------YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD--TVAETSASISTFVMDKLGQTMSVDENQLTLE 564 (861)
T ss_dssp ------GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG--GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred ------HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHHHHHHhhhcccCChh
Confidence 12468899999999974 4479999999999999864321 11234456677777777542
Q ss_pred ---CChHHHHHHHHHhcCCCc--ccccCCchHHHHHHHHHHHHH
Q 035871 999 ---SNFKIRIQAAAALAVPSS--VSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 999 ---~NFKVRi~AA~AL~~p~~--R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
....||..+..+|+.... ..++..+.+.++..++..|++
T Consensus 565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 245689999999863321 113334566788888888875
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=158.56 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=151.2
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...+.|+++.||..|+.+|+.+|... .....++..+.-.+.+|+++.||.+|+++||.+.. .+..+.
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~~------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~-----~~~~~~ 126 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKICK------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCK-----KNPIYS 126 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCCT------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-----HCGGGH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----cCCccc
Confidence 3446788999999999999999998421 11122333221134689999999999999999842 112223
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..+++.|...+.|++..||..|+|+||++++. .. +..|++. .+|.+ .||..|++|
T Consensus 127 ~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----------------~~----~~~L~~~----l~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 127 PKIVEQSQITAFDKSTNVRRATAFAISVINDK----------------AT----IPLLINL----LKDPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------------CC----HHHHHHH----HTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH----------------HH----HHHHHHH----HcCCCHHHHHHHHHH
Confidence 57788999999999999999999999999862 11 2233332 34444 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++.. . .+.+++.|++.+++++..||++|+.|||+++. +.+++.|+.++.
T Consensus 183 L~~~~~-------------~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~~L~~~l~ 233 (280)
T 1oyz_A 183 ININKY-------------D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLSVLCDELK 233 (280)
T ss_dssp HHHHTC-------------C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHHHHHHHHT
T ss_pred HHhhcc-------------C----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHHHHHHHhc
Confidence 999840 1 25688899999999999999999999999983 347889999997
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+ ++ ||..|+.||+ .+|.. .++..|...|++
T Consensus 234 d-~~--vr~~a~~aL~------~i~~~--~~~~~L~~~l~~ 263 (280)
T 1oyz_A 234 K-NT--VYDDIIEAAG------ELGDK--TLLPVLDTMLYK 263 (280)
T ss_dssp S-SS--CCHHHHHHHH------HHCCG--GGHHHHHHHHTT
T ss_pred C-cc--HHHHHHHHHH------hcCch--hhhHHHHHHHhc
Confidence 6 43 9999999999 45653 566667777754
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=151.89 Aligned_cols=180 Identities=27% Similarity=0.237 Sum_probs=142.3
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.+...+.++++.+|..|+.+|+.++... .+..| ..+++|+++.||..|+++||.+. .
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~-----------~~~~L-~~~l~~~~~~vr~~a~~~L~~~~------~----- 74 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPL-IKALKDEDAWVRRAAADALGQIG------D----- 74 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGG-----------GHHHH-HHHTTCSSHHHHHHHHHHHHHHC------C-----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChh-----------HHHHH-HHHHcCCCHHHHHHHHHHHHhhC------C-----
Confidence 4556889999999999999999998632 12223 35668999999999999999983 2
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..+++.|...+.|++..||..|+|+||++++. . .+..|++ +.+|.+ .||..|+++
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------~----~~~~L~~----~l~d~~~~vr~~a~~a 130 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------------R----AVEPLIK----ALKDEDWFVRIAAAFA 130 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------------G----GHHHHHH----HTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------------H----HHHHHHH----HHcCCCHHHHHHHHHH
Confidence 24677888889999999999999999998753 1 1222333 234555 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++. + +.+++.|++.+.+.+..||..|+.|||+++. +.+++.|..++.
T Consensus 131 L~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~ 179 (201)
T 3ltj_A 131 LGEIG---------------D----ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHT---------------C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHH
T ss_pred HHHhC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHh
Confidence 99994 1 2467789999999999999999999999963 458889999995
Q ss_pred cCCChHHHHHHHHHhcCCCc
Q 035871 997 DSSNFKIRIQAAAALAVPSS 1016 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~ 1016 (1127)
+++..||..|+.||+...+
T Consensus 180 -d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 180 -TGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp -HCCHHHHHHHHHHHHHCC-
T ss_pred -CCCHHHHHHHHHHHHHHHh
Confidence 5889999999999985543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-13 Score=162.52 Aligned_cols=341 Identities=13% Similarity=0.113 Sum_probs=217.1
Q ss_pred hHHHHHhhhhcCC-CCchHhHHHHHHHHHHhhC-hhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhH
Q 035871 602 VLFTLLQCSERLA-SPAICFESLQALRAVSHNY-PNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKV 679 (1127)
Q Consensus 602 ~L~~Ll~~~~~~~-~~~vRlEAlQvL~ala~~y-p~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~ 679 (1127)
++..+++....+. ...+|..++++|..++..+ |.....|...+...+..+++.... ...+
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~------------------~~~v 190 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP------------------SNNV 190 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS------------------CHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCC------------------CHHH
Confidence 5555665554332 4678999999999999876 666667777666666666532100 1145
Q ss_pred HHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHH-HHHhh
Q 035871 680 VTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSE-MIEKH 758 (1127)
Q Consensus 680 ~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~-iie~~ 758 (1127)
+..|++.+..+.. +.+. .+. ...|.. +++ .
T Consensus 191 r~~a~~~l~~~~~----~~~~---------------------------~~~-----------------~~~~~~~il~-~ 221 (876)
T 1qgr_A 191 KLAATNALLNSLE----FTKA---------------------------NFD-----------------KESERHFIMQ-V 221 (876)
T ss_dssp HHHHHHHHHHHGG----GCHH---------------------------HHT-----------------SHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHH----HHHH---------------------------HHH-----------------hHHHHHHHHH-H
Confidence 5566676655421 1100 000 001111 222 3
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc----------
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP---------- 828 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p---------- 828 (1127)
+...+++.+..+|..++.||+.+.......+...-...++. +++....|+++.||..|+..++.++...
T Consensus 222 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 300 (876)
T 1qgr_A 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH-HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccc
Confidence 44566788899999999999987654322222111113444 3446678999999999999998886431
Q ss_pred ----------ccccchHHHHHHHHHHHHhcC-------CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHH
Q 035871 829 ----------QVSQSAEIIDKFIHAVEINTH-------DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHL 891 (1127)
Q Consensus 829 ----------~L~~d~~fv~~ai~aLl~~l~-------D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~l 891 (1127)
....-..++...++.++..+. |.+.+||..|+.+|+.++..+.. .+-+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------------~~~~~~ 367 (876)
T 1qgr_A 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHV 367 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------------GGHHHH
T ss_pred cccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------------hhHHHH
Confidence 000001123556666766653 56789999999999999987541 122233
Q ss_pred HHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 892 MASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 892 L~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
+..+. ....|.+ +||..|+++||.++....++.+ ....+.+++.|++.+++.+.+||+.||++||++
T Consensus 368 l~~l~----~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~--------~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 368 LPFIK----EHIKNPDWRYRDAAVMAFGCILEGPEPSQL--------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp HHHHH----HHTTCSSHHHHHHHHHHHHHTSSSSCHHHH--------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHH----HHccCCChHHHHHHHHHHHHHHcCCCHHHH--------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33332 2344544 8999999999999743321110 124677899999999999999999999999999
Q ss_pred hccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcc----------------cccCCchHHHHHHHHHH
Q 035871 971 FLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSV----------------SDYGKSFSDVVQGLEHI 1034 (1127)
Q Consensus 971 ~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R----------------~~yG~~~~~V~~~L~~a 1034 (1127)
...-.-.....+....+++.|+..+.+ +-+||.+|+.||+..... ..+..+++.++..|...
T Consensus 436 ~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~ 513 (876)
T 1qgr_A 436 CELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET 513 (876)
T ss_dssp HHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH
Confidence 854211111235678899999999965 389999999999743321 23566788888888877
Q ss_pred HHH
Q 035871 1035 LEN 1037 (1127)
Q Consensus 1035 Le~ 1037 (1127)
+..
T Consensus 514 l~~ 516 (876)
T 1qgr_A 514 TDR 516 (876)
T ss_dssp TTS
T ss_pred HhC
Confidence 764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=156.57 Aligned_cols=344 Identities=17% Similarity=0.102 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHhc--CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhh
Q 035871 559 GLLVAAISCLTAALST--SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNI 636 (1127)
Q Consensus 559 al~VaaL~cL~avls~--~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l 636 (1127)
.++..|+.+|..+++. .++..+ ++ ...+.+..|++....+....+|.+|..+|..++.+.+..
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~---~~------------~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDE---VI------------STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHH---HH------------TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHH---HH------------HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3677888999888763 222222 11 111466667766655546789999999999999876654
Q ss_pred hhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcc
Q 035871 637 MSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTS 715 (1127)
Q Consensus 637 ~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s 715 (1127)
...... .+...+.++|+. .+ ..++.+|+..|..+.... +
T Consensus 100 ~~~~~~~~~i~~L~~lL~~---~~-----------------~~vr~~a~~~L~~l~~~~---------~----------- 139 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSS---EF-----------------EDVQEQAVWALGNIAGDS---------T----------- 139 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHTTC---------H-----------
T ss_pred HHHHHhCCCHHHHHHHHcC---CC-----------------HHHHHHHHHHHHHHccCC---------H-----------
Confidence 432211 233344444321 11 145566666665442100 0
Q ss_pred hhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHcc-CChhHHHHHHHHHhccchhHHhhcchhHH
Q 035871 716 DCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQH-ISSMVRTAAVTCFAGITSSVFFSLLKETQ 794 (1127)
Q Consensus 716 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d-~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q 794 (1127)
.+. + ..++. .++. .|...+++ .+..+|..|+.||++|....-........
T Consensus 140 ------------~~~----~------~~~~~------~~i~-~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 190 (450)
T 2jdq_A 140 ------------MCR----D------YVLDC------NILP-PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190 (450)
T ss_dssp ------------HHH----H------HHHHT------TCHH-HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT
T ss_pred ------------HHH----H------HHHHC------CCHH-HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 000 0 00000 1112 23345554 67899999999999986321000001111
Q ss_pred HHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcc
Q 035871 795 EFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCI 874 (1127)
Q Consensus 795 ~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~ 874 (1127)
..++..+ ..+++++++.||..|+++|+.++....-.........+++.|+..+.|++..||..|+|+|+|++..-....
T Consensus 191 ~~~l~~L-~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 191 SPCLNVL-SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp GGGHHHH-HHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHH-HHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 2344433 467789999999999999999974321000111112467888888999999999999999999986311000
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH-HHHHHHHHHhh
Q 035871 875 DDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL-ERIVQALVSCV 952 (1127)
Q Consensus 875 ~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~-E~~i~aLlk~l 952 (1127)
. ..+....+..|++ ..++ ++.||..|+++||||...-.. .-.... ..+++.|++.+
T Consensus 270 ~---------~~~~~~~l~~L~~----ll~~~~~~vr~~a~~~L~~l~~~~~~---------~~~~~~~~~~l~~L~~~l 327 (450)
T 2jdq_A 270 Q---------VILNCSALQSLLH----LLSSPKESIKKEACWTISNITAGNRA---------QIQTVIDANIFPALISIL 327 (450)
T ss_dssp H---------HHHTTTHHHHHHH----HTTCSSHHHHHHHHHHHHHHTTSCHH---------HHHHHHHTTHHHHHHHHH
T ss_pred H---------HHHHCccHHHHHH----HHcCCCHHHHHHHHHHHHHHHcCCHH---------HHHHHHHCCCHHHHHHHH
Confidence 0 0011123344433 3444 448999999999999621100 000011 35778899999
Q ss_pred ccCCccchhhHHHHHHhhhcc--ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 953 TTGNVKVQWNVCRALSNLFLN--ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 953 ~~~n~KVRWNAc~ALGnl~~n--~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+++.+||.+||++|||+..+ +... ..-....+++.|+.++. +++.+||..|+.||.
T Consensus 328 ~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~ 386 (450)
T 2jdq_A 328 QTAEFRTRKEAAWAITNATSGGSAEQI--KYLVELGCIKPLCDLLT-VMDSKIVQVALNGLE 386 (450)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHTCHHHHHHGGG-SSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHH--HHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHH
Confidence 999999999999999999753 1110 00012347899999995 578999999999997
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=149.41 Aligned_cols=178 Identities=27% Similarity=0.238 Sum_probs=140.4
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|...+.|+++.+|..|+.+|+.+|... .+..| ..+++|+++.||..|+++||.+. + .
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~~-----------~~~~L-~~~l~~~~~~vr~~a~~aL~~~~------~-----~ 80 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPL-IKALKDEDAWVRRAAADALGQIG------D-----E 80 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGG-----------GHHHH-HHHTTCSCHHHHHHHHHHHHHHC------C-----G
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCcc-----------HHHHH-HHHHcCCCHHHHHHHHHHHHhhC------C-----H
Confidence 345678999999999999999998632 12223 36678999999999999999983 2 2
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRAL 917 (1127)
.+++.|...+.|++..||..|+|+||++++. . .+..|++ +.+|.+ .||..|+++|
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------------~----~~~~L~~----~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------------R----AVEPLIK----ALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------------G----GHHHHHH----HTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------------H----HHHHHHH----HHhCCCHHHHHHHHHHH
Confidence 4667788889999999999999999999853 1 1223333 235555 7999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
|++. + +.+++.|++.+++.+..||..|+.|||++.. +.+++.|..++.
T Consensus 137 ~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~- 184 (211)
T 3ltm_A 137 GEIG---------------D----ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAE- 184 (211)
T ss_dssp HHHC---------------C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHH-
T ss_pred HHcC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHh-
Confidence 9994 1 2367789999999999999999999999974 457889999986
Q ss_pred CCChHHHHHHHHHhcCCC
Q 035871 998 SSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~p~ 1015 (1127)
+++..||..|+.||+...
T Consensus 185 d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 185 TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HCCHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 578899999999998543
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=168.17 Aligned_cols=522 Identities=14% Similarity=0.174 Sum_probs=300.4
Q ss_pred hhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhh
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVA 470 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~A 470 (1127)
.+||.+|+.+|..+++..+. .||..++| .|+.. +.|+++.+|.+|+.+|..+.....+. +
T Consensus 62 ~~vR~~A~~~L~~l~~~~~~---~~~~~i~~------------~Ll~~-l~d~~~~vR~~a~~~L~~i~~~l~~~----~ 121 (1230)
T 1u6g_C 62 GEVQNLAVKCLGPLVSKVKE---YQVETIVD------------TLCTN-MLSDKEQLRDISSIGLKTVIGELPPA----S 121 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTSCH---HHHHHHHH------------HHHHH-TTCSSSHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHhCCH---HHHHHHHH------------HHHHH-hcCCcHHHHHHHHHHHHHHHHhCCCc----c
Confidence 47999999999998875332 34433332 33333 57899999999999998887643221 0
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhc
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEG 550 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~ 550 (1127)
. . ..| ......++-..|+..+....+..+...++.++..++...|-. +.+ +++.++..+.+.+.+
T Consensus 122 ~---~---~~~------~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~-l~~-~~~~ll~~l~~~L~~- 186 (1230)
T 1u6g_C 122 S---G---SAL------AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL-LVN-FHPSILTCLLPQLTS- 186 (1230)
T ss_dssp --------CCT------HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS-CTT-THHHHHHHHGGGGGC-
T ss_pred c---c---cch------HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH-HHH-HHHHHHHHHHHHHcC-
Confidence 0 0 011 123445566667777764345678888999999998766532 222 456777666665532
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVS 630 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala 630 (1127)
. + ..+|..|+.+++.++...+.. . .+ .++..+++....+....+|..+++++..++
T Consensus 187 ---~-~-~~vR~~a~~al~~l~~~~~~~--~--------------~~---~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 187 ---P-R-LAVRKRTIIALGHLVMSCGNI--V--------------FV---DLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp ---S-S-HHHHHHHHHHHHHHTTTC--------------------CT---THHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred ---C-c-HHHHHHHHHHHHHHHHhcCHH--H--------------HH---HHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 1 2 348889999999888643221 0 00 133444444333333578999999999999
Q ss_pred hhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccC
Q 035871 631 HNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLD 710 (1127)
Q Consensus 631 ~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d 710 (1127)
...|..+.+|...+...+.+.+++. + +.+...+.+.++.+.+.. |.+. .
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~---~-----------------~~vR~~a~~~l~~l~~~~----~~~~-~------ 291 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVD---D-----------------DELREYCIQAFESFVRRC----PKEV-Y------ 291 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSC---C-----------------TTTHHHHHHHHHHHHHCT----TCCC-H------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCC---C-----------------HHHHHHHHHHHHHHHHHC----hHHH-H------
Confidence 9888877788887777777776421 1 123334455555444321 1110 0
Q ss_pred CCCcchhhhh--hccCCCCcccccchhhhhhhhhhhh---cchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhH
Q 035871 711 NPFTSDCIRI--KNISSAPLYEQESSEDIKESAKAFQ---SGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSV 785 (1127)
Q Consensus 711 ~~~~s~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~---l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~ 785 (1127)
|+..+.+.. ..+..+|.+..+..+. .....+ ........ +... ..-.+....||.+|++||+.+..
T Consensus 292 -~~l~~li~~ll~~l~~d~~~~~~~d~~---~~~~~~~~~~~~~~~~~--~~~~-~~~~d~~~~vR~~A~~~l~~l~~-- 362 (1230)
T 1u6g_C 292 -PHVSTIINICLKYLTYDPNYNYDDEDE---DENAMDADGGDDDDQGS--DDEY-SDDDDMSWKVRRAAAKCLDAVVS-- 362 (1230)
T ss_dssp -HHHHHHHHHHTTCCCCC------------------------------------------CTTHHHHHHHHHHHHHHT--
T ss_pred -HhHHHHHHHHHHHhCCCCCCCCccccc---ccccccccccccchhhc--cccc-ccccccCHHHHHHHHHHHHHHHH--
Confidence 000000000 0011122221000000 000000 00000000 0000 00113346799999999987543
Q ss_pred Hhhcch---hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc-----------c---c----chHHHHHHHHHH
Q 035871 786 FFSLLK---ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV-----------S---Q----SAEIIDKFIHAV 844 (1127)
Q Consensus 786 f~~Lp~---~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L-----------~---~----d~~fv~~ai~aL 844 (1127)
..|+ ..-..++.. +...++|.++.||.+|+.+|+.++..-.. . + -..++...++.+
T Consensus 363 --~~~~~~~~~~~~l~~~-l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 439 (1230)
T 1u6g_C 363 --TRHEMLPEFYKTVSPA-LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439 (1230)
T ss_dssp --TCCTTHHHHHTTTHHH-HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHH
T ss_pred --hchhHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHH
Confidence 1121 111123443 34567899999999999999887521000 0 0 022445566677
Q ss_pred HHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc---hhhhhHHHHHhhhh
Q 035871 845 EINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD---KIKSNAVRGLGNLS 921 (1127)
Q Consensus 845 l~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D---KVRsnAvRALGnLl 921 (1127)
+..+.|++..||..+..+||.+...+... +.+ .+..++...+...+|.. .||..|+.+++.+.
T Consensus 440 ~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-------------l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGA-------------LTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTT-------------TGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHchhh-------------hHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 77799999999999999999998763211 111 24455555566667764 78999999999886
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc-cc----ccccCCCchhHHHHHHHHHHh
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN-ET----INLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n-~~----i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
.....+. ...+.+.+++.|++++.+.+.+||-.|..+++.+... .. -...-.++.+.+++.|+..+.
T Consensus 506 ~~~~~~~--------~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 577 (1230)
T 1u6g_C 506 CNHSPQV--------FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577 (1230)
T ss_dssp HSSCGGG--------GHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HhCCHHH--------HHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHh
Confidence 4332211 1225677889999999999999999998899877632 00 000112456789999998884
Q ss_pred -cCCChHHHHHHHHHhcCCCcc--cccCCchHHHHHHHHHHHH
Q 035871 997 -DSSNFKIRIQAAAALAVPSSV--SDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 997 -~~~NFKVRi~AA~AL~~p~~R--~~yG~~~~~V~~~L~~aLe 1036 (1127)
.+.+..||.+|+.+||..... ..++.+++.++..|...|.
T Consensus 578 ~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 578 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK 620 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc
Confidence 457889999999999854421 2344567777777666654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-12 Score=160.83 Aligned_cols=502 Identities=14% Similarity=0.128 Sum_probs=286.7
Q ss_pred hhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAE 471 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE 471 (1127)
++|..|+.+|..+++..++.+..|-+.++| .| -..+.|+++.||..|+.++..+.......+
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~~~~~ll~------------~l-~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----- 210 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVNFHPSILT------------CL-LPQLTSPRLAVRKRTIIALGHLVMSCGNIV----- 210 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTTTHHHHHH------------HH-GGGGGCSSHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH------------HH-HHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----
Confidence 699999999999998777655544433332 22 234578999999999999998876532211
Q ss_pred hccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcC
Q 035871 472 YKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGF 551 (1127)
Q Consensus 472 ~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~ 551 (1127)
|. . .+. .|+..|..+.+..+...+++|++.++...|. ++.+ +++.++..+...+.+
T Consensus 211 ---------~~---~----~l~----~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~-~l~~l~~~ll~~l~d-- 266 (1230)
T 1u6g_C 211 ---------FV---D----LIE----HLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGE-YLEKIIPLVVKFCNV-- 266 (1230)
T ss_dssp ---------CT---T----HHH----HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTT-SCTTHHHHHHHHHSS--
T ss_pred ---------HH---H----HHH----HHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHH-HHHHHHHHHHHHhcC--
Confidence 11 1 111 2333334433344566789999999888764 4432 344455444444432
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHhhhcCCCCCCC-----cchhHHHH-------------Hhhh-
Q 035871 552 PLKTDQTGLLVAAISCLTAALSTSPA--PVQVKQMFLEEISAGSVEVDK-----RSGVLFTL-------------LQCS- 610 (1127)
Q Consensus 552 ~~~~d~~al~VaaL~cL~avls~~~~--~~eV~~~L~~e~ssg~~~~~~-----~s~~L~~L-------------l~~~- 610 (1127)
..+ .+|-.++.+++.+...-+. .+-+..++ +..-......+. ...+.... -.|.
T Consensus 267 --~~~--~vR~~a~~~l~~l~~~~~~~~~~~l~~li-~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1230)
T 1u6g_C 267 --DDD--ELREYCIQAFESFVRRCPKEVYPHVSTII-NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341 (1230)
T ss_dssp --CCT--TTHHHHHHHHHHHHHCTTCCCHHHHHHHH-HHHTTCCCCC---------------------------------
T ss_pred --CCH--HHHHHHHHHHHHHHHHChHHHHHhHHHHH-HHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence 112 2677888888887765432 11111111 110000000000 00000000 0011
Q ss_pred hcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHH
Q 035871 611 ERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDES 690 (1127)
Q Consensus 611 ~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~ 690 (1127)
+.+....+|..|.++|..++..+|..+.++...+...+...++ | . .+.+..++++.+..+
T Consensus 342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-----d-----------~----~~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK-----E-----------R----EENVKADVFHAYLSL 401 (1230)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS-----C-----------S----SSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC-----C-----------C----chHHHHHHHHHHHHH
Confidence 1122346899999999999998886666666554433322221 1 0 125666777777777
Q ss_pred HHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhH
Q 035871 691 LRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMV 770 (1127)
Q Consensus 691 lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~V 770 (1127)
++......+ +.. +.+.+... ..+. ..-..+...+++..+ ..++++++.+
T Consensus 402 ~~~~~~~~~--~~~--------------------~~~~~~~~--~~~~------~~~~~~l~~ll~~l~-~~l~~~~~~v 450 (1230)
T 1u6g_C 402 LKQTRPVQS--WLC--------------------DPDAMEQG--ETPL------TMLQSQVPNIVKALH-KQMKEKSVKT 450 (1230)
T ss_dssp HHHHCCC----------------------------------C--CCHH------HHHHHHTTHHHHHHH-HHTTCSCHHH
T ss_pred HHHhccccc--ccc--------------------Cccccccc--cchH------HHHHHHhhHHHHHHH-HHhccCCHHH
Confidence 665421110 000 00000000 0000 000112223333222 3477889999
Q ss_pred HHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCH--hHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc
Q 035871 771 RTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVA--SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT 848 (1127)
Q Consensus 771 RaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~--~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l 848 (1127)
|.++|.+|+.+-...-..+. ..-..++.. ++..++|+++ .||.+|+.+++.++..-.-..-..|+..+++.++..+
T Consensus 451 r~~~~~~L~~l~~~~~~~l~-~~l~~ll~~-l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 451 RQCCFNMLTELVNVLPGALT-QHIPVLVPG-IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHSTTTTG-GGHHHHHHH-HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHchhhhH-HHHHHHHHH-HHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999986443111121 223445553 4577788764 8999999999988521100111336778889999999
Q ss_pred CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhc--cCCc-hhhhhHHHHHhhhhhccc
Q 035871 849 HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLT--KDGD-KIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 849 ~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~--~D~D-KVRsnAvRALGnLl~~l~ 925 (1127)
+|++..||..|.++++.++..+...... ....+. ..+..++...+... .|.+ .||.+|++++|.|.....
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~------~~~~~~-~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQP------SSFDAT-PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSC------CCCCCH-HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccc------cccchH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999876531000 001121 12334444433333 4444 799999999999986655
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHH
Q 035871 926 YTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRI 1005 (1127)
Q Consensus 926 ~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi 1005 (1127)
..-. .....+++.|...+.+. .+|.+++.|+|.+.... ....-.+|...+++.|+..+. +.|..+|.
T Consensus 602 ~~~~---------~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~-~~~~~~r~ 668 (1230)
T 1u6g_C 602 DNLG---------SDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLR-KNQRALKL 668 (1230)
T ss_dssp GGCC---------THHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTT-SCCHHHHH
T ss_pred chhh---------hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 4311 13577888888887643 48999999999988642 112234789999999999996 57899999
Q ss_pred HHHHHhcC
Q 035871 1006 QAAAALAV 1013 (1127)
Q Consensus 1006 ~AA~AL~~ 1013 (1127)
+|+.||+.
T Consensus 669 ~a~~al~~ 676 (1230)
T 1u6g_C 669 GTLSALDI 676 (1230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-12 Score=142.85 Aligned_cols=302 Identities=12% Similarity=0.108 Sum_probs=189.1
Q ss_pred hHHHHHhhhhcCC-CCchHhHHHHHHHHHHhhC-hhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhH
Q 035871 602 VLFTLLQCSERLA-SPAICFESLQALRAVSHNY-PNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKV 679 (1127)
Q Consensus 602 ~L~~Ll~~~~~~~-~~~vRlEAlQvL~ala~~y-p~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~ 679 (1127)
++..|++....+. ...+|..|+++|..++..+ |.....|...+...+..+|+.... ...+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~------------------~~~v 190 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP------------------SNNV 190 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC------------------CHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC------------------CHHH
Confidence 5566666554432 5679999999999999877 777777887777777777643210 1145
Q ss_pred HHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhH
Q 035871 680 VTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHM 759 (1127)
Q Consensus 680 ~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~L 759 (1127)
+.+|++.+..++. +. .+ +.. ...++..++. .+
T Consensus 191 r~~a~~~l~~~~~----~~----------------~~-------------------~~~--------~~~~~~~l~~-~l 222 (462)
T 1ibr_B 191 KLAATNALLNSLE----FT----------------KA-------------------NFD--------KESERHFIMQ-VV 222 (462)
T ss_dssp HHHHHHHHHHHTT----TT----------------HH-------------------HHT--------SHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHH----HH----------------HH-------------------hhh--------hhHHHHHHHH-HH
Confidence 5666666654310 00 00 000 0012333343 56
Q ss_pred HHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc-----------
Q 035871 760 PLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFP----------- 828 (1127)
Q Consensus 760 p~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p----------- 828 (1127)
+..+.++++.+|..+|.||+.+....-..+..--...++. +++..++|+++.||..|+..++.++-..
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH-HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6777888999999999999998654322221111102344 3346678999999999999998886331
Q ss_pred --------cccc-chHHHHHHHHHHHHhcC-------CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHH
Q 035871 829 --------QVSQ-SAEIIDKFIHAVEINTH-------DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLM 892 (1127)
Q Consensus 829 --------~L~~-d~~fv~~ai~aLl~~l~-------D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL 892 (1127)
.... -..++...++.++..+. |.+..||..|+.+|+.++..+.. .+-+.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-------------~~~~~~~ 368 (462)
T 1ibr_B 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVL 368 (462)
T ss_dssp CSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-------------THHHHHH
T ss_pred ccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHH
Confidence 1111 01134566677766653 45679999999999999987531 1222233
Q ss_pred HHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 893 ASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 893 ~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
..+ ....+|.+ ++|..|+++||.++.....+.+. ...+.+++.|+..+++.+.+||++||++||++.
T Consensus 369 ~~l----~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~--------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 369 PFI----KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HHH----HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC--------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHH----HHHhcCCChHHHHHHHHHHHHHhcCCcHHHHH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 22344544 89999999999998543322211 124568999999999999999999999999997
Q ss_pred ccccccccCCCchhHHHHHHHHHH
Q 035871 972 LNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 972 ~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
..-.-.....+..+.+++.|+..|
T Consensus 437 ~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 437 ELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HhcccccccHHHHHHHHHHHHHHh
Confidence 532111112345677777776655
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-13 Score=149.92 Aligned_cols=400 Identities=14% Similarity=0.109 Sum_probs=229.0
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhHhc--ccC-CC-CCC-CchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 035871 498 GIIYLIQRETHDRLLASLFKILMPLISC--TPY-SR-MPG-ELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAAL 572 (1127)
Q Consensus 498 ~Ll~aL~~E~~~~vLtqlLKcLa~LVq~--TPY-~R-L~~-~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avl 572 (1127)
.|+..|+.+ +..+....+++|..+++. .|. .. +.. ++++.++..+ .+ ..+ ..++..+..+|+.+.
T Consensus 24 ~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L----~~----~~~-~~v~~~a~~~L~~l~ 93 (450)
T 2jdq_A 24 DMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL----KR----KEN-CTLQFESAWVLTNIA 93 (450)
T ss_dssp HHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHH----TC----TTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHH----CC----CCC-HHHHHHHHHHHHHHh
Confidence 345556554 566888889999888752 222 11 123 6666666533 21 112 237778888998887
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHH
Q 035871 573 STSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKI 651 (1127)
Q Consensus 573 s~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~ 651 (1127)
...+.. ...+. ..+.+..|++.... ....+|.+|+.+|..++...+........ .+...+.++
T Consensus 94 ~~~~~~---~~~~~------------~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 94 SGNSLQ---TRIVI------------QAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp SSCHHH---HHHHH------------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHH---HHHHH------------hCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 643211 11111 12345556555543 35689999999999999887654432221 122333444
Q ss_pred HHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccc
Q 035871 652 LKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQ 731 (1127)
Q Consensus 652 L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~ 731 (1127)
++. + ....++..|+..|..+.+. . .|....
T Consensus 158 l~~----~---------------~~~~v~~~a~~~L~~l~~~----~---------------------------~~~~~~ 187 (450)
T 2jdq_A 158 FSK----Q---------------NRLTMTRNAVWALSNLCRG----K---------------------------SPPPEF 187 (450)
T ss_dssp TTS----C---------------CCHHHHHHHHHHHHHHHCC----S---------------------------SSCCCG
T ss_pred hcC----C---------------CCHHHHHHHHHHHHHHhCC----C---------------------------CCCCCH
Confidence 321 0 0124555666666544220 0 000000
Q ss_pred cchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCH
Q 035871 732 ESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVA 811 (1127)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~ 811 (1127)
. .+ ..++. .|...+.+.++.+|..|+.+|+++....-.....-....++..+ ..++.|+++
T Consensus 188 ~----------~~-------~~~l~-~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~ 248 (450)
T 2jdq_A 188 A----------KV-------SPCLN-VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL-VELLMHNDY 248 (450)
T ss_dssp G----------GT-------GGGHH-HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH-HHHTTCSCH
T ss_pred H----------HH-------HHHHH-HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH-HHHHCCCch
Confidence 0 00 01112 23345678889999999999999865321111000011244434 467789999
Q ss_pred hHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHH
Q 035871 812 SVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHL 891 (1127)
Q Consensus 812 ~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~l 891 (1127)
.||..|+++||+++....-......-..+++.|...+.+++..||..|+|+||||+..-..... ..+....
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~---------~~~~~~~ 319 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ---------TVIDANI 319 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------HHHHCCC
Confidence 9999999999999642110000000124678888899999999999999999999852100000 0011122
Q ss_pred HHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 892 MASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 892 L~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
+..|++.+ ..++++||.+|+.+|||+.....++.. .......+++.|++.+.+++.+||-+|++||+++.
T Consensus 320 l~~L~~~l---~~~~~~v~~~a~~~L~~l~~~~~~~~~-------~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 320 FPALISIL---QTAEFRTRKEAAWAITNATSGGSAEQI-------KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHHH---HHSCHHHHHHHHHHHHHHHHHCCHHHH-------HHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33333321 134458999999999999743221110 00112457889999999999999999999999998
Q ss_pred ccccccc-----cCCCchhHH-----HHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 972 LNETINL-----EDMDWAPSV-----FSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 972 ~n~~i~~-----~~~~wa~~v-----~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
....-.. ...+....+ ++.|..+ .+++|++||..|..+|.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 390 RLGEQEAKRNGTGINPYCALIEEAYGLDKIEFL-QSHENQEIYQKAFDLIE 439 (450)
T ss_dssp HHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHH-HCHHHHHHHHHHHHHHH
T ss_pred HhchhhhhccccchhHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHH
Confidence 6432100 001122222 3455554 46789999999999887
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=151.74 Aligned_cols=341 Identities=16% Similarity=0.105 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
++..|+.+|..+++... +...+ + ..+.+..|+++...+....+|.+|..+|..++.+.+...
T Consensus 103 ~~~~A~~~L~~ll~~~~~~~~~~~---~-------------~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 103 EQLSATVKFRQILSREHRPPIDVV---I-------------QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHHHHHTCCSSSCSHHHH---H-------------HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccHHHH---H-------------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 67788888988887642 22222 1 124667777776554457899999999999998776544
Q ss_pred hhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
..... .....+..+|+.. + ..+..+|+..|..+....
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~---~-----------------~~vr~~A~~aL~~l~~~~---------------------- 204 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG---S-----------------VEVKEQAIWALGNVAGDS---------------------- 204 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC---C-----------------HHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHCCCHHHHHHHHcCC---C-----------------HHHHHHHHHHHHHHhCCC----------------------
Confidence 32211 2234455555431 1 145556666665442100
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF 796 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~ 796 (1127)
|.+. + ..... .++. .|-.++++.++.+|..|+.||+++....=..........
T Consensus 205 ----------~~~~--------~--~~~~~------~~l~-~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 257 (530)
T 1wa5_B 205 ----------TDYR--------D--YVLQC------NAME-PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257 (530)
T ss_dssp ----------HHHH--------H--HHHHT------TCHH-HHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred ----------ccch--------H--HHHHc------CcHH-HHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHh
Confidence 0000 0 00000 1112 233556778899999999999997532100111111223
Q ss_pred HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccc
Q 035871 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDD 876 (1127)
Q Consensus 797 ~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~ 876 (1127)
++..| ..+++++++.||..|+++|+.++..+.-.-...+-..+++.|+..+.|++..||..|.|+||||+..-.....
T Consensus 258 ~l~~L-~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~- 335 (530)
T 1wa5_B 258 ALPTL-AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ- 335 (530)
T ss_dssp GHHHH-HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHH-HHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHH-
Confidence 45433 4778899999999999999999742110000111124578888889999999999999999999852100000
Q ss_pred cCCCCCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH-----HHHHHHHHH
Q 035871 877 FAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL-----ERIVQALVS 950 (1127)
Q Consensus 877 ~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~-----E~~i~aLlk 950 (1127)
..+....+..|++ ...+. ..||..|+++||||... +.... ..+++.|++
T Consensus 336 --------~~~~~~~l~~L~~----lL~~~~~~vr~~A~~aL~~l~~~-------------~~~~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 336 --------VVINAGVLPALRL----LLSSPKENIKKEACWTISNITAG-------------NTEQIQAVIDANLIPPLVK 390 (530)
T ss_dssp --------HHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHTTCHHHHHH
T ss_pred --------HHHHcchHHHHHH----HHcCCCHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHCCCHHHHHH
Confidence 0011122333333 34444 48999999999999631 11111 346778999
Q ss_pred hhccCCccchhhHHHHHHhhhccccc--cccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 951 CVTTGNVKVQWNVCRALSNLFLNETI--NLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 951 ~l~~~n~KVRWNAc~ALGnl~~n~~i--~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
.+.+++.+||.+||+||+|+.....- .....-....+++.|+.++. +++.+||..|+.||..
T Consensus 391 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALEN 454 (530)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 99999999999999999999764110 00000012237889999995 5799999999999973
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=150.09 Aligned_cols=345 Identities=18% Similarity=0.126 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
++..|+..|..+++..+ +...+ + ..|.+..|+++...+....+|.+|..+|..++.+.+...
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~---~-------------~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEV---I-------------QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHH---H-------------HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHH---H-------------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 66788888888887654 22222 1 124566666666555447899999999999999877654
Q ss_pred hhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
..... .....+..+|+. .+ ..+..+|+..|..+... .+
T Consensus 154 ~~~~~~g~i~~L~~lL~~---~~-----------------~~v~~~a~~aL~~l~~~-----------------~~---- 192 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGS---SS-----------------DDVREQAVWALGNVAGD-----------------SP---- 192 (528)
T ss_dssp HHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHHT-----------------CH----
T ss_pred HHHHhCCcHHHHHHHhcC---CC-----------------HHHHHHHHHHHHHHhCC-----------------Ch----
Confidence 43322 122333444321 11 14555566665543210 00
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHH-ccCChhHHHHHHHHHhccchhHHhhcchhHHH
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLIL-QHISSMVRTAAVTCFAGITSSVFFSLLKETQE 795 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l-~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~ 795 (1127)
.+. . ...+. .++. .|...+ .+.++.+|..|+.+|+++.... ..-......
T Consensus 193 -----------~~~--------~--~i~~~------g~l~-~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~ 243 (528)
T 4b8j_A 193 -----------KCR--------D--LVLAN------GALL-PLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTR 243 (528)
T ss_dssp -----------HHH--------H--HHHHT------TCHH-HHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHT
T ss_pred -----------hhH--------H--HHHHC------CcHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHH
Confidence 000 0 00000 0111 222344 4667899999999999986432 111111223
Q ss_pred HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc
Q 035871 796 FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCID 875 (1127)
Q Consensus 796 ~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~ 875 (1127)
.++..| ..++++.++.||..|+++|+.++..+.-.....+-..+++.|+..+.+++..||..|+|+||||+..-.....
T Consensus 244 ~~l~~L-~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 244 PALPAL-ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp THHHHH-HHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHH-HHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 355544 4778999999999999999999743221111111124578888899999999999999999999963111000
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc
Q 035871 876 DFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT 954 (1127)
Q Consensus 876 ~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~ 954 (1127)
..+....+..|++.+ ..+ ++.||..|+.+||||...-.. . -.......+++.|++.+.+
T Consensus 323 ---------~~~~~~~l~~L~~lL---~~~~~~~v~~~A~~~L~nl~~~~~~-~-------~~~~~~~~~i~~L~~lL~~ 382 (528)
T 4b8j_A 323 ---------CIIDHQALPCLLSLL---TQNLKKSIKKEACWTISNITAGNKD-Q-------IQAVINAGIIGPLVNLLQT 382 (528)
T ss_dssp ---------HHHTTTHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHTSCHH-H-------HHHHHHTTCHHHHHHHHHH
T ss_pred ---------HHHHhhhHHHHHHHH---cCCCcHHHHHHHHHHHHHHHCCCHH-H-------HHHHHHCCCHHHHHHHHhc
Confidence 011112234443321 234 568999999999999731000 0 0000122567889999999
Q ss_pred CCccchhhHHHHHHhhhcc--ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 955 GNVKVQWNVCRALSNLFLN--ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 955 ~n~KVRWNAc~ALGnl~~n--~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
++.+||-+||+||+|+..+ +... ..-....+++.|+.++. +++.+||..|..+|+..
T Consensus 383 ~~~~v~~~a~~aL~nl~~~~~~~~~--~~l~~~~~i~~L~~lL~-~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 383 AEFDIKKEAAWAISNATSGGSHDQI--KYLVSEGCIKPLCDLLI-CPDIRIVTVCLEGLENI 441 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHH--HHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHH--HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999865 1110 00011346889999995 58899999999999844
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=137.31 Aligned_cols=231 Identities=19% Similarity=0.102 Sum_probs=150.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~d~~fv 837 (1127)
+...++++++.+|..||.+|.++-+..-.....-....++..| ..+++++++.||..|+++||+++. .+..+ +...-
T Consensus 17 ~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~ 94 (252)
T 4db8_A 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQI-QAVID 94 (252)
T ss_dssp HHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHGGGCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHH
Confidence 3356788999999999999987654321110000011244544 477889999999999999999964 12221 11111
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
..+++.|+..+.+++..||..|+|+|+||+..-..... ..+....+..| ++..++.+ +||.+|+.+
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L----~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ---------AVIDAGALPAL----VQLLSSPNEQILQEALWA 161 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHH----HHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH---------HHHHCCCHHHH----HHHHhCCCHHHHHHHHHH
Confidence 23678899999999999999999999999863111000 00111123333 33455545 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||||...-+.. ........+++.|++.+.+++.+||-+||.+|+|+..+..-... .-....+++.|+.++.
T Consensus 162 L~~l~~~~~~~--------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 162 LSNIASGGNEQ--------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHTTSCHHH--------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHTTTT
T ss_pred HHHHHcCChHH--------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCcHHHHHHHhC
Confidence 99996211100 00001234688999999999999999999999999843211000 0011237888999995
Q ss_pred cCCChHHHHHHHHHhcCC
Q 035871 997 DSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p 1014 (1127)
+.+.+||..|+.+|+..
T Consensus 233 -~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 233 -HENEKIQKEAQEALEKL 249 (252)
T ss_dssp -CSSSHHHHTHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHH
Confidence 57889999999999854
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=135.06 Aligned_cols=231 Identities=19% Similarity=0.126 Sum_probs=152.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc-cccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCF-PQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv 837 (1127)
|...++++++.+|..|+.+|+++....-.....-....++..+ ..+++++++.||..|+++||+++.. +..+. ...-
T Consensus 7 L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~ 84 (252)
T 4hxt_A 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVL-VKLLTSTDSEVQKEAARALANIASGPDEAIK-AIVD 84 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHH-HHHHhCCCHHHHHHHHHHHHHHHcCChHHHH-HHHH
Confidence 4456788889999999999999854321000000011245544 4778999999999999999999753 22211 1112
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRA 916 (1127)
...++.++..+.+++..||..|+|+|+|++..-..... ..+....+..|++ ..++. ++||.+|+++
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L~~----~l~~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK---------AIVDAGGVEVLVK----LLTSTDSEVQKEAARA 151 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHH----HTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------HHHHCCCHHHHHH----HHcCCCHHHHHHHHHH
Confidence 24678888999999999999999999999952111000 0011112334433 34444 4899999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc-ccccccCCCchhHHHHHHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN-ETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n-~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
||||...-+.. ........+++.|++.+.+++.+||.+|+++|+|+... +... ..-....+++.|+.++
T Consensus 152 L~~l~~~~~~~--------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 152 LANIASGPDEA--------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI--KAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHTTSCHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH--HHHHHTTHHHHHHHGG
T ss_pred HHHHHcCCHHH--------HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHCCCHHHHHHHH
Confidence 99996211100 00011234789999999999999999999999999863 2111 0001123689999999
Q ss_pred hcCCChHHHHHHHHHhcCCC
Q 035871 996 RDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 996 ~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
. +++.+||..|+.+|+...
T Consensus 222 ~-~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 222 T-STDSEVQKEAQRALENIK 240 (252)
T ss_dssp G-CSCHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHHH
Confidence 5 578899999999998443
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-12 Score=147.03 Aligned_cols=231 Identities=15% Similarity=0.105 Sum_probs=142.6
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.++.++++.||..||.+|+++....-.....-....++.. +..++.++++.||..|+++||+++....-.....+-..+
T Consensus 264 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~-Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR-LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 342 (530)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH-HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH-HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch
Confidence 4556778889999999999875321000000000123443 347778999999999999999997421100001111246
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNL 920 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnL 920 (1127)
++.|+..+.+++..||..|+|+|+||+..-...... .+....+..|++.+ ...+++||..|+.||||+
T Consensus 343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~---------~~~~~~l~~L~~lL---~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA---------VIDANLIPPLVKLL---EVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH---------HHHTTCHHHHHHHH---HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH---------HHHCCCHHHHHHHH---hcCCHHHHHHHHHHHHHH
Confidence 788888999999999999999999998521100000 00011233333321 234558999999999999
Q ss_pred hhcccc--CCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc-----ccCCCchhH-----HH
Q 035871 921 SRFVKY--TSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN-----LEDMDWAPS-----VF 988 (1127)
Q Consensus 921 l~~l~~--~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~-----~~~~~wa~~-----v~ 988 (1127)
...... +.. ....-..+++.|+..+.+++.+||-+|+.||++++....-. ....+.... .+
T Consensus 411 ~~~~~~~~~~~-------~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 411 SSGGLQRPDII-------RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHTTTCTHHH-------HHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HhcCCCcHHHH-------HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 754322 110 00012347889999999999999999999999998643210 000111111 24
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhc
Q 035871 989 SILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 989 ~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+.|..+ .+++|..||..|..+|.
T Consensus 484 ~~L~~L-~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 484 EKIFNC-QQNENDKIYEKAYKIIE 506 (530)
T ss_dssp HHHHGG-GGCSCHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHH
Confidence 455554 47789999999999986
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-10 Score=130.83 Aligned_cols=261 Identities=13% Similarity=0.060 Sum_probs=168.1
Q ss_pred HHHHHccC--ChhHHHHHHHHHhccchhHHhhcchh-HHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccch
Q 035871 759 MPLILQHI--SSMVRTAAVTCFAGITSSVFFSLLKE-TQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSA 834 (1127)
Q Consensus 759 Lp~~l~d~--~~~VRaaAc~cLa~Igs~~f~~Lp~~-~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~ 834 (1127)
+-..++|+ ++.||..|+.|++++..-.-..++.+ .+.+++.. +.....|+++.||.+|+++|+.++ .+|..-.
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-- 253 (462)
T 1ibr_B 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV-VCEATQCPDTRVRVAALQNLVKIMSLYYQYME-- 253 (462)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT--
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33567777 78999999999998532110111111 23455553 446678999999999999999987 3333211
Q ss_pred HHHH-HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcc---cccC--CCCC--CcccccHHHHHHHHHHHHhhcc--
Q 035871 835 EIID-KFIHAVEINTHDPLVSVRITASWALANICDSIRHCI---DDFA--FKPS--IDSNANSHLMASLTESALNLTK-- 904 (1127)
Q Consensus 835 ~fv~-~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~---~~~~--~~~~--~~~~is~~lL~~L~e~aL~a~~-- 904 (1127)
.++. .+++.++..+.|.+..||..|.+.++++++...... .+.. ..+. ....+....+..++..+++...
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~ 333 (462)
T 1ibr_B 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (462)
T ss_dssp TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc
Confidence 1234 566667777889999999999999999998642110 0000 0000 0001111123334443333332
Q ss_pred ------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccc
Q 035871 905 ------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINL 978 (1127)
Q Consensus 905 ------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~ 978 (1127)
|+..+|..|+.+||.+...+.. .....+++.+...+++.+.++|..|++|||.+.......
T Consensus 334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~------------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~- 400 (462)
T 1ibr_B 334 DENDDDDDWNPCKAAGVCLMLLATCCED------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS- 400 (462)
T ss_dssp CSSCCTTCCSHHHHHHHHHHHHHHHTTT------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH-
Confidence 1227999999999999865541 235678888888899999999999999999998642200
Q ss_pred cCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCccc--cc--CCchHHHHHHHHHHHH
Q 035871 979 EDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVS--DY--GKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 979 ~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~--~y--G~~~~~V~~~L~~aLe 1036 (1127)
.-.+..+.+++.|+..+. +++.+||..|+.+|+...... .. ..+++.+..+|+.+|+
T Consensus 401 ~~~~~l~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTCTTTTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 012345789999999995 588999999999998544211 11 2467777777776664
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=133.79 Aligned_cols=160 Identities=28% Similarity=0.314 Sum_probs=126.9
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~ 882 (1127)
+..++|+++.||..|+++||.+. . ..+++.|+..+.|++..||..|+|+||++++.-
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~------~-----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~------------ 76 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIG------D-----ERAVEPLIKALKDEDAWVRRAAADALGQIGDER------------ 76 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHC------C-----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG------------
T ss_pred HHHhcCCCHHHHHHHHHHHHhcC------C-----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH------------
Confidence 36679999999999999999883 2 246788888899999999999999999998531
Q ss_pred CcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh
Q 035871 883 IDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961 (1127)
Q Consensus 883 ~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW 961 (1127)
. +..|++ +.+|.+ .||..|+++||++. + +.+++.|++.+.+.+..||.
T Consensus 77 ---~-----~~~L~~----~l~d~~~~vr~~a~~aL~~~~---------------~----~~~~~~L~~~l~d~~~~vr~ 125 (201)
T 3ltj_A 77 ---A-----VEPLIK----ALKDEDGWVRQSAAVALGQIG---------------D----ERAVEPLIKALKDEDWFVRI 125 (201)
T ss_dssp ---G-----HHHHHH----HTTCSSHHHHHHHHHHHHHHC---------------C----GGGHHHHHHHTTCSSHHHHH
T ss_pred ---H-----HHHHHH----HHcCCCHHHHHHHHHHHHHhC---------------c----HHHHHHHHHHHcCCCHHHHH
Confidence 1 222332 234444 79999999999984 2 23677888999999999999
Q ss_pred hHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 962 NAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.|+.|||++... .+++.|+.++. +++..||..|+.||+ .+|. +.++..|...|++
T Consensus 126 ~a~~aL~~~~~~------------~~~~~L~~~l~-d~~~~vr~~A~~aL~------~~~~--~~~~~~L~~~l~d 180 (201)
T 3ltj_A 126 AAAFALGEIGDE------------RAVEPLIKALK-DEDGWVRQSAADALG------EIGG--ERVRAAMEKLAET 180 (201)
T ss_dssp HHHHHHHHHTCG------------GGHHHHHHHTT-CSSHHHHHHHHHHHH------HHCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCH------------HHHHHHHHHHc-CCCHHHHHHHHHHHH------HhCc--hhHHHHHHHHHhC
Confidence 999999999753 36788999995 588999999999999 4564 3677777777765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=132.12 Aligned_cols=159 Identities=28% Similarity=0.330 Sum_probs=125.1
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSI 883 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~ 883 (1127)
..++|+++.||..|+++||.+. . ..+++.|+..+.|++..||..|+|+||++++.
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~------~-----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-------------- 80 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIG------D-----ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------------- 80 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC------C-----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------------
T ss_pred HHHcCCCHHHHHHHHHHHHHhC------C-----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------------
Confidence 5578999999999999999983 2 25678888889999999999999999999852
Q ss_pred cccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhh
Q 035871 884 DSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWN 962 (1127)
Q Consensus 884 ~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWN 962 (1127)
.. +..|++ +.+|.| .||..|+++||++. + ..+++.|++.+.+.+..||..
T Consensus 81 --~~----~~~L~~----~l~~~~~~vr~~a~~aL~~~~---------------~----~~~~~~L~~~l~d~~~~vr~~ 131 (211)
T 3ltm_A 81 --RA----VEPLIK----ALKDEDGWVRQSAAVALGQIG---------------D----ERAVEPLIKALKDEDWFVRIA 131 (211)
T ss_dssp --GG----HHHHHH----HTTCSSHHHHHHHHHHHHHHC---------------C----GGGHHHHHHHTTCSSHHHHHH
T ss_pred --HH----HHHHHH----HHcCCCHHHHHHHHHHHHHhC---------------c----HHHHHHHHHHHhCCCHHHHHH
Confidence 11 222322 234544 79999999999994 2 236788999999999999999
Q ss_pred HHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 963 VCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 963 Ac~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
|+.|||++... .+++.|..++ ++++..||..|+.||+ .+|. +.+...|...|++
T Consensus 132 a~~aL~~~~~~------------~~~~~L~~~l-~d~~~~vr~~a~~aL~------~~~~--~~~~~~L~~~l~d 185 (211)
T 3ltm_A 132 AAFALGEIGDE------------RAVEPLIKAL-KDEDGWVRQSAADALG------EIGG--ERVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHCCG------------GGHHHHHHHT-TCSSHHHHHHHHHHHH------HHCS--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH------------HHHHHHHHHH-cCCCHHHHHHHHHHHH------HhCc--hhHHHHHHHHHhC
Confidence 99999999753 3678899988 5688999999999999 3553 3566666666654
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-12 Score=129.24 Aligned_cols=188 Identities=18% Similarity=0.120 Sum_probs=126.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
.|..+++++++.+|..||.+|+++.... .+.+. .++.. +..+++++++.||..|+++||+++....-..
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGG-----NEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCCHHH-HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 5556788999999999999999986322 12222 24443 4477899999999999999999963111111
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-Cchhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKS 911 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRs 911 (1127)
+..+-...++.|+..+++++..||..|+|+|+||+..-..... ..+....+..|++ ..++ +++||.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L~~----ll~~~~~~v~~ 156 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ---------AVIDAGALPALVQ----LLSSPNEQILQ 156 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHH----HTTCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH---------HHHHcCcHHHHHH----HHcCCCHHHHH
Confidence 1111123678888999999999999999999999952110000 0011122344443 3444 458999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
+|+.+|+|+...-+.. ........+++.|++.+.+++.+||.+|+.||+++-.
T Consensus 157 ~a~~aL~~l~~~~~~~--------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 157 EALWALSNIASGGNEQ--------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHTSCHHH--------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCcHH--------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999997321100 0001123578899999999999999999999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-10 Score=133.83 Aligned_cols=482 Identities=14% Similarity=0.103 Sum_probs=268.2
Q ss_pred hhhHHHHHHHHHHHHhhCC-ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhh
Q 035871 391 SKVRVAALVCLQDLCRADP-KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQV 469 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~-K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~ 469 (1127)
..||..|+.+|..+++..+ |. .++-... .-+.|+..|-.++++.+|..|+.+|..|-.... .-..+
T Consensus 28 ~~vr~~A~~~L~~La~~~~~~~------~i~~~~~------~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i 94 (644)
T 2z6h_A 28 QVVVNKAAVMVHQLSKKEASRH------AIMRSPQ------MVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAI 94 (644)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHH------HHTTCHH------HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhHH------HHHhccC------hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHH
Confidence 4799999999999998644 21 1110000 113555656556789999999999987654421 11111
Q ss_pred hhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCC---CCCchHHHHHHHHHH
Q 035871 470 AEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRM---PGELMPNLIISLRAR 546 (1127)
Q Consensus 470 AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL---~~~Ll~~vv~~l~~~ 546 (1127)
.+ . ..=..|+..|..+ +..+...++.+|..|....+-.+- ..|.++.++..
T Consensus 95 ~~---~------------------g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l---- 148 (644)
T 2z6h_A 95 FK---S------------------GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL---- 148 (644)
T ss_dssp HT---T------------------THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG----
T ss_pred HH---c------------------CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH----
Confidence 11 0 1123455666664 577899999999999888653332 25666666653
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHH
Q 035871 547 IEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQAL 626 (1127)
Q Consensus 547 i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL 626 (1127)
+... +. .++.++..+|..+.... ++....+.+ .+.+..|++.........++..+..+|
T Consensus 149 L~~~----~~--~~~~~a~~~L~~La~~~---~~~~~~i~~------------~g~v~~Lv~lL~~~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 149 LNKT----NV--KFLAITTDCLQILAYGN---QESKLIILA------------SGGPQALVNIMRTYTYEKLLWTTSRVL 207 (644)
T ss_dssp GGCC----CH--HHHHHHHHHHHHHHTTC---HHHHHHHHH------------TTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HCcC----CH--HHHHHHHHHHHHHHhcC---cHHHHHHHH------------cCChHHHHHHHHcCChHHHHHHHHHHH
Confidence 3221 11 25666667777766432 222222211 123444444443333345677788888
Q ss_pred HHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccc
Q 035871 627 RAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDD 706 (1127)
Q Consensus 627 ~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~ 706 (1127)
..++. ++........ ..++..+++..... ...++..+..+|..+.+..
T Consensus 208 ~nLs~-~~~~~~~l~~--~g~l~~L~~ll~~~-----------------~~~~~~~a~~~L~nL~~~~------------ 255 (644)
T 2z6h_A 208 KVLSV-CSSNKPAIVE--AGGMQALGLHLTDP-----------------SQRLVQNCLWTLRNLSDAA------------ 255 (644)
T ss_dssp HHHTT-CTTHHHHHHH--TTHHHHHHTTTTCS-----------------CHHHHHHHHHHHHHHGGGC------------
T ss_pred HHHhc-CcccHHHHHH--CCCHHHHHHHHhcC-----------------CHHHHHHHHHHHHHHhhcc------------
Confidence 88875 3333321111 11222232221110 1245555566665442210
Q ss_pred cccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHH
Q 035871 707 KLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVF 786 (1127)
Q Consensus 707 ~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f 786 (1127)
+.... . ..++. .|...+.++++.+|..||.+|+++....
T Consensus 256 --------------------~~~~~--~-----------------~~~i~-~Lv~lL~~~d~~v~~~a~~aL~~L~~~~- 294 (644)
T 2z6h_A 256 --------------------TKQEG--M-----------------EGLLG-TLVQLLGSDDINVVTCAAGILSNLTCNN- 294 (644)
T ss_dssp --------------------TTCCS--C-----------------HHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHTTC-
T ss_pred --------------------hhhhh--h-----------------hhHHH-HHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence 00000 0 12222 3445677889999999999999986431
Q ss_pred hhcchhHHHH-----HHHHHHhhhccC-C-CHhHHHHHHHHHhhhhcccccc---cchHHHHHHHHHHHHhcCCCC-cch
Q 035871 787 FSLLKETQEF-----IISSLIDSALHD-D-VASVRSAACRAIGVISCFPQVS---QSAEIIDKFIHAVEINTHDPL-VSV 855 (1127)
Q Consensus 787 ~~Lp~~~q~~-----~i~~Lll~~~~D-e-~~~VRaAA~RALGvlv~~p~L~---~d~~fv~~ai~aLl~~l~D~~-~~V 855 (1127)
.+.+.. .+..|+ .++.+ + .+.||..|+++||+++....-. .....-...++.|...+.+++ ..|
T Consensus 295 ----~~~~~~v~~~g~v~~Lv-~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 295 ----YKNKMMVCQVGGIEALV-RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp ----HHHHHHHHHTTHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred ----HHHHHHHHHcCCHHHHH-HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 111221 344343 44443 3 3799999999999997421100 000111246788888888876 599
Q ss_pred hchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh-----------------hcc--CCchhhhhHHHH
Q 035871 856 RITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN-----------------LTK--DGDKIKSNAVRG 916 (1127)
Q Consensus 856 RikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~-----------------a~~--D~DKVRsnAvRA 916 (1127)
|..|+|+|+||+..-... . ..+....+..|++.+-. .+. ..+.|+.+|++|
T Consensus 370 ~~~a~~~L~nLa~~~~~~-~---------~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a 439 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANH-A---------PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439 (644)
T ss_dssp HHHHHHHHHHHTTSGGGH-H---------HHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHH-H---------HHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence 999999999998531100 0 01111223333332111 011 234678888888
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc--ccCCCchhHHHHHHHHH
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN--LEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~--~~~~~wa~~v~~~Ll~l 994 (1127)
|++|.+.-.. ........+++.|++.+.+++.+||-+|+.+|+++..++... +...+ .++.|..+
T Consensus 440 L~~La~~~~~---------~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g----~l~~L~~l 506 (644)
T 2z6h_A 440 LHILARDVHN---------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG----ATAPLTEL 506 (644)
T ss_dssp HHHHTTSHHH---------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHhcCHHH---------HHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcC----ChhHHHHH
Confidence 8888632100 000112346789999999999999999999999998654321 11111 35677777
Q ss_pred HhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 995 LRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
+ +++|-+||..|+.||+...... +..|...| + ++.++.+
T Consensus 507 l-~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~-~-~~il~~~ 545 (644)
T 2z6h_A 507 L-HSRNEGVATYAAAVLFRMSEDK--PQDYKKRL-S-VELTSSL 545 (644)
T ss_dssp T-TCSCHHHHHHHHHHHHHHTTTS--CHHHHHHH-H-HHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHHHhccC--cHhhhccc-c-hHHHHHH
Confidence 7 5689999999999998543211 22254444 2 5666665
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-10 Score=142.08 Aligned_cols=447 Identities=11% Similarity=0.062 Sum_probs=249.9
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 035871 439 LLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKI 518 (1127)
Q Consensus 439 iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKc 518 (1127)
-|.+|+..+|.++++.+..+ .+ + .+....-..|+..|.. .+..+...++++
T Consensus 123 ~L~~~~~~~r~~a~~~l~~~-~~--------~-------------------~i~~g~ip~Lv~lL~~-~d~~vr~~A~~~ 173 (780)
T 2z6g_A 123 RLAEPSQMLKHAVVNLINYQ-DD--------A-------------------ELATRAIPELTKLLND-EDQVVVNKAAVM 173 (780)
T ss_dssp ---CCSCHHHHHHHHHHHHH-HH--------H-------------------HHHHHHHHHHHHHHHC-SCHHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHhh-hH--------H-------------------HHHhCCHHHHHHHHCC-CCHHHHHHHHHH
Confidence 45678899999988887622 00 0 0112233445555554 467788899999
Q ss_pred HHHhHhcccCCC-C--CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCC
Q 035871 519 LMPLISCTPYSR-M--PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVE 595 (1127)
Q Consensus 519 La~LVq~TPY~R-L--~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~ 595 (1127)
|..|...-+..+ + .++.++.++.. +... .|. .++..|..+|..+... + +....+.
T Consensus 174 L~~L~~~~~~~~~i~~~~~~i~~Lv~~----L~~~----~d~-~vr~~Aa~aL~~Ls~~-~---~~~~~i~--------- 231 (780)
T 2z6g_A 174 VHQLSKKEASRHAIMRSPQMVSAIVRT----MQNT----NDV-ETARCTSGTLHNLSHH-R---EGLLAIF--------- 231 (780)
T ss_dssp HHHHHTSHHHHHHHTTCHHHHHHHHHH----HHHC----CCH-HHHHHHHHHHHHHHTS-H---HHHHHHH---------
T ss_pred HHHHhCCChhHHHHHhccChHHHHHHH----HcCC----CCH-HHHHHHHHHHHHHhCC-c---hhHHHHH---------
Confidence 999876543211 1 12344444443 3322 122 2566777778774332 1 1111111
Q ss_pred CCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccc
Q 035871 596 VDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGF 674 (1127)
Q Consensus 596 ~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l 674 (1127)
..+.+..|+.+...+ ...+|.+|+.+|..++.+++........ .....+.++|+. .+
T Consensus 232 ---~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~---~~--------------- 289 (780)
T 2z6g_A 232 ---KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TN--------------- 289 (780)
T ss_dssp ---HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CC---------------
T ss_pred ---HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc---CC---------------
Confidence 114556666665433 4679999999999999988765543321 223334444421 10
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHH
Q 035871 675 IGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEM 754 (1127)
Q Consensus 675 ~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~i 754 (1127)
.++...+...|. .+.- +..+ ... ...+. ..
T Consensus 290 --~~v~~~a~~aL~----~La~--~~~e------------------------------~~~------~i~~~------~~ 319 (780)
T 2z6g_A 290 --VKFLAITTDCLQ----ILAY--GNQE------------------------------SKL------IILAS------GG 319 (780)
T ss_dssp --HHHHHHHHHHHH----HHHT--TCHH------------------------------HHH------HHHTT------TH
T ss_pred --HHHHHHHHHHHH----HHhc--CChH------------------------------HHH------HHHHc------CC
Confidence 123322333322 2210 0000 000 00010 11
Q ss_pred HHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhccc
Q 035871 755 IEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFP 828 (1127)
Q Consensus 755 ie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p 828 (1127)
++ .|..++++.+ ..++..++.+|.++.... +.+. .++.. +..++.+.++.++..|+++|+.++...
T Consensus 320 i~-~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~------~~~~~i~~~g~l~~-Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 320 PQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQA-LGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HH-HHHHHHTTCCCHHHHHHHHHHHHHHHTST------THHHHHHHTTHHHH-HGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHHhhcCh------HHHHHHHHhchHHH-HHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 22 2334556655 456678888888875321 1122 23443 447778889999999999999997433
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch
Q 035871 829 QVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK 908 (1127)
Q Consensus 829 ~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK 908 (1127)
.-... ...+++.|+..+++++..||..|+|+|+||+..-..+... .+....+..|++.+. ...+.+.
T Consensus 392 ~~~~~---~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~---------i~~~g~i~~Lv~lL~-~~~~~~~ 458 (780)
T 2z6g_A 392 TKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM---------VCQVGGIEALVRTVL-RAGDRED 458 (780)
T ss_dssp TTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH---------HHTTTHHHHHHHHHH-HHTTCHH
T ss_pred hhhhh---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH---------HHHCCCHHHHHHHHH-ccCCHHH
Confidence 21111 2578899999999999999999999999998631110000 011122444444321 1234458
Q ss_pred hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCc-cchhhHHHHHHhhhccccccccCCCchhHH
Q 035871 909 IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNV-KVQWNVCRALSNLFLNETINLEDMDWAPSV 987 (1127)
Q Consensus 909 VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~-KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v 987 (1127)
||..|+++||||...-..... .........+++.|++.+.+++. +||-+||++|+|+..++.... .-....+
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~-----~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~--~i~~~g~ 531 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEM-----AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA--PLREQGA 531 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHH-----HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH--HHHHTTH
T ss_pred HHHHHHHHHHHHHhcCchHHH-----HHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH--HHHHCCC
Confidence 999999999999521110000 00001123457889999988775 999999999999986543220 0011347
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhc
Q 035871 988 FSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 988 ~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
++.|+.++.+ .+++||..|+.|++.- ....|....+|..+.+.+|.++.
T Consensus 532 i~~Lv~lL~~-~~~~~~~~aa~al~nq--~~~~~~~~~~v~~~a~~aL~~La 580 (780)
T 2z6g_A 532 IPRLVQLLVR-AHQDTQRRTSMGGTQQ--QFVEGVRMEEIVEACTGALHILA 580 (780)
T ss_dssp HHHHHHHHHH-HHHHHHHTTC--------CCSTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-cchhHHHHHhhccccc--hhhcccChHHHHHHHHHHHHHHh
Confidence 8999999964 7899999999998751 12335556778888888998874
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=122.28 Aligned_cols=190 Identities=19% Similarity=0.119 Sum_probs=126.3
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
.+..+++++++.||..|+++|+.++....-......-..+++.|+..+.+++..||..|+|+|+||+..-......
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~---- 91 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA---- 91 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH----
Confidence 3457789999999999999999996321111111111246788999999999999999999999998421000000
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
.+....+..|++ ..++.+ .||.+|+.+|+||...-... ........+++.|++.+++++.+|
T Consensus 92 -----i~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~~i~~L~~ll~~~~~~v 154 (210)
T 4db6_A 92 -----VIDAGALPALVQ----LLSSPNEQILQEALWALSNIASGGNEQ--------IQAVIDAGALPALVQLLSSPNEQI 154 (210)
T ss_dssp -----HHHTTCHHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred -----HHHCCCHHHHHH----HHcCCcHHHHHHHHHHHHHHHcCCHHH--------HHHHHHcCcHHHHHHHHcCCCHHH
Confidence 000011333333 345444 89999999999996211100 000112447899999999999999
Q ss_pred hhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 960 QWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
|.+||+||+|+..+..-.. ..-....+++.|+.++. +++.+||..|+.||+.
T Consensus 155 ~~~a~~aL~~l~~~~~~~~-~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQS-HENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHH-HHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 9999999999986521100 00011247889999995 6899999999999973
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=141.67 Aligned_cols=227 Identities=15% Similarity=0.158 Sum_probs=150.1
Q ss_pred HHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 759 MPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
|...+.+++ +.+|..|+.||++|.... .+.+. .++.. +..+++++++.||..|+++||+++....-..
T Consensus 122 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~~~~~~~~~~g~i~~-L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 122 FVQFLTREDFPQLQFEAAWALTNIASGT-----SENTKVVIDHGAVPI-FVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHH-HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCC-----HHHHHHHHhCCcHHH-HHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 334667776 999999999999987532 11222 24443 4477889999999999999999963211101
Q ss_pred chHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 833 SAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
+...-..+++.|+..+ .+++..||..|+|+|+|++..-.. . ........+..| +.+..+.| .|+
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~-------~---~~~~~~~~l~~L----~~lL~~~~~~v~ 261 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ-------P---SFEQTRPALPAL----ARLIHSNDEEVL 261 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC-------C---CHHHHTTHHHHH----HHHTTCCCHHHH
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-------C---cHHHHHHHHHHH----HHHHCCCCHHHH
Confidence 1111123578888888 788999999999999999974200 0 001111223333 33445444 899
Q ss_pred hhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHH
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSI 990 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~ 990 (1127)
.+|+.+|++|...-... -....-..+++.|++.+.+++..||.+|+.+|||+.....-... .-....+++.
T Consensus 262 ~~a~~aL~~l~~~~~~~--------~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~-~~~~~~~l~~ 332 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDK--------IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ-CIIDHQALPC 332 (528)
T ss_dssp HHHHHHHHHHTSSCHHH--------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHTTTHHHH
T ss_pred HHHHHHHHHHHcCCHHH--------HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH-HHHHhhhHHH
Confidence 99999999996211100 00001124678999999999999999999999999864321100 0011347899
Q ss_pred HHHHHhcCCChHHHHHHHHHhcCC
Q 035871 991 LLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 991 Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
|+.++.+..+..||..|+.+|+..
T Consensus 333 L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 333 LLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Confidence 999997654899999999999854
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-10 Score=136.08 Aligned_cols=347 Identities=15% Similarity=0.118 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
.+..|...+.-++|.+. |..+|- +.|.++.|+++...+....++.||..+|..++.+.+...
T Consensus 73 ~q~~a~~~~rklls~e~~ppi~~ii----------------~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 73 SQLQATQAARKLLSREKQPPIDNII----------------RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHH----------------HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHH----------------HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 44456666666676543 333331 246788888887766667899999999999998877655
Q ss_pred hhhHHH-HHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQQ-VSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~~-l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
....+. ....+.++|+. .+ ..+..+|+..|..+.. |.+
T Consensus 137 ~~vv~~GaIp~Lv~lL~s---~~-----------------~~v~e~A~~aL~nLa~-----------------d~~---- 175 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLAS---PH-----------------AHISEQAVWALGNIAG-----------------DGS---- 175 (510)
T ss_dssp HHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHT-----------------TCH----
T ss_pred HHHHHCCCHHHHHHHHcC---CC-----------------HHHHHHHHHHHHHHHh-----------------CCH----
Confidence 433331 22334444421 11 1455556666654421 000
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-----hhHHHHHHHHHhccchhHHhhcch
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-----SMVRTAAVTCFAGITSSVFFSLLK 791 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-----~~VRaaAc~cLa~Igs~~f~~Lp~ 791 (1127)
.++ + ...+.+ .++ .|...+..++ ..+.+.++.+|+++....-...+.
T Consensus 176 -----------~~r--------~--~v~~~G------~i~-~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 176 -----------AFR--------D--LVIKHG------AID-PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp -----------HHH--------H--HHHHTT------CHH-HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred -----------HHH--------H--HHHHcC------ChH-HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 000 0 000111 011 2223344332 345667778888753321111111
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
.....++..| ..+++++++.|+..|+++|+.++..+.-......-..+++.|...+.+++..|+..|+++||||+..--
T Consensus 228 ~~~~~~lp~L-~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 228 DAVEQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 2223455544 477899999999999999999964332111110012346778888899999999999999999974210
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhc-cCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHH
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLT-KDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVS 950 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~-~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk 950 (1127)
..... .+....+..| ..+. ..++.||..|+.+|+||...-... ........+++.|+.
T Consensus 307 ~~~~~---------i~~~g~l~~L----~~LL~~~~~~v~~~A~~aL~nl~a~~~~~--------~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 307 EQTQK---------VIDAGALAVF----PSLLTNPKTNIQKEATWTMSNITAGRQDQ--------IQQVVNHGLVPFLVG 365 (510)
T ss_dssp HHHHH---------HHHTTGGGGC----C-CTTCSSHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHH
T ss_pred HHHHH---------HhhccchHHH----HHHhcCCCHHHHHHHHHHHHHHHcCcHHH--------HHHHHhcCCHHHHHH
Confidence 00000 0000001111 1122 455689999999999996211100 001112357788999
Q ss_pred hhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 951 CVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 951 ~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
.+.+++.+||-+||+||+|+..+.+......=...-+++.|+.+| ++++-+|+..+..||...
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 999999999999999999997542211000001123678999999 568999999999999743
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-11 Score=124.86 Aligned_cols=188 Identities=18% Similarity=0.132 Sum_probs=126.7
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
|...++++++.+|..|+.+|+++.... .+.+. .++.. +..+++++++.||..|+++||+++..+..+.+
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH-HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCHHH-HHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 446678888999999999999987521 11122 24443 44778899999999999999999754433312
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-Cchhhhh
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSN 912 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsn 912 (1127)
...-..+++.|+..+.+++..||..|+|+|+||+..-...... .+....+..|++ ..++ +++||.+
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~---------~~~~~~i~~L~~----ll~~~~~~v~~~ 199 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA---------VIDAGALPALVQ----LLSSPNEQILQE 199 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH---------HHHTTCHHHHHH----GGGCSSHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH---------HHHCCCHHHHHH----HHCCCCHHHHHH
Confidence 2222347889999999999999999999999999631110000 000112333333 3444 4489999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
|+++||||...-+.. .....-..+++.|++.+.+++.+||.+||.+|+|+.++
T Consensus 200 a~~~L~~l~~~~~~~--------~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 200 ALWALSNIASGGNEQ--------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHHHHhcCCHHH--------HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 999999996211100 00011234788899999999999999999999998753
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=137.70 Aligned_cols=227 Identities=17% Similarity=0.156 Sum_probs=142.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
|-.++.++++.++..||.||+++.... .+.... ++..| ..++.+.++.|+..|+++||+++....-...
T Consensus 237 L~~LL~~~~~~v~~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~L-v~lL~~~~~~v~~~al~aL~nl~~~~~~~~~ 310 (510)
T 3ul1_B 237 LVRLLHHNDPEVLADSCWAISYLTDGP-----NERIEMVVKKGVVPQL-VKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTCHHHH-HHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhch-----hhhHHHHHhcccchhh-hhhhcCCChhhhhHHHHHHHHhhcCCHHHHH
Confidence 445678889999999999999986432 222222 23333 3677889999999999999999642111000
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhH
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnA 913 (1127)
...-..+++.|...+.+++..||..|+|+|+||+..-..... ..+....+..|++.+ ...+.+||.+|
T Consensus 311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~---------~v~~~g~i~~Lv~lL---~~~~~~v~~~A 378 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ---------QVVNHGLVPFLVGVL---SKADFKTQKEA 378 (510)
T ss_dssp HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHHHH---HSSCHHHHHHH
T ss_pred HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH---------HHHhcCCHHHHHHHH---cCCCHHHHHHH
Confidence 000112334455668899999999999999999853111000 011112233443321 23445899999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccC-CCchhHHHH---
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLED-MDWAPSVFS--- 989 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~-~~wa~~v~~--- 989 (1127)
+.||+|+...-+.+.. ....-..+|+.|++.++..+.+++-++..||.|+++-..- .+. ... ...|.
T Consensus 379 a~aL~Nl~~~~~~~~~-------~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~-~~~~~~~-~~~iee~g 449 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQI-------VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK-LGETEKL-SIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHCCHHHH-------HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT-TTCHHHH-HHHHHHTT
T ss_pred HHHHHHHHccCCHHHH-------HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh-ccchHHH-HHHHHHcC
Confidence 9999999743322210 0001234688999999999999999999999999853110 010 001 11121
Q ss_pred --HHHHHHhcCCChHHHHHHHHHhc
Q 035871 990 --ILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 990 --~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
..+..|++++|-.|+-.|..-|-
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12556678899999999988885
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-10 Score=129.00 Aligned_cols=418 Identities=10% Similarity=0.042 Sum_probs=232.0
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCC--C-CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 035871 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSR--M-PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAAL 572 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~R--L-~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avl 572 (1127)
-..|+..|.+ .++.+....+++|..|....++.+ + ..|.++.+++. +... .|. .++..+..+|..+.
T Consensus 19 i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~----L~~~----~~~-~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 19 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT----MQNT----NDV-ETARCTAGTLHNLS 88 (529)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHH----HHHC----CCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHH----HhcC----CCH-HHHHHHHHHHHHHH
Confidence 3455566665 466788899999999987655311 1 12455555543 3321 122 25556777777643
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHH
Q 035871 573 STSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKI 651 (1127)
Q Consensus 573 s~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~ 651 (1127)
.. ++....+. ..|.+..|+++...+ ...+|.+|+.+|..++.+.+.......+ .....+.++
T Consensus 89 ~~----~~~~~~i~------------~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 89 HH----REGLLAIF------------KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp TS----HHHHHHHH------------HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred cC----chhHHHHH------------HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 32 11111111 114556666665433 3679999999999999876554322211 122333333
Q ss_pred HHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccc
Q 035871 652 LKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQ 731 (1127)
Q Consensus 652 L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~ 731 (1127)
|+. .+ .++...+...|..+ .. +..+ ..
T Consensus 152 l~~---~~-----------------~~~~~~~~~~L~~l----a~--~~~~--------------------------~~- 178 (529)
T 1jdh_A 152 LNK---TN-----------------VKFLAITTDCLQIL----AY--GNQE--------------------------SK- 178 (529)
T ss_dssp GGC---CC-----------------HHHHHHHHHHHHHH----HT--TCHH--------------------------HH-
T ss_pred Hhc---CC-----------------HHHHHHHHHHHHHH----Hh--CCHH--------------------------HH-
Confidence 321 10 12333333333221 10 0000 00
Q ss_pred cchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhh
Q 035871 732 ESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSA 805 (1127)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~ 805 (1127)
.. ..+. ..++ .|...+++.+ ..++.+++.+|.+++... +.+. .++..+ ..+
T Consensus 179 ---~~------i~~~------~~i~-~L~~ll~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~g~~~~L-~~l 235 (529)
T 1jdh_A 179 ---LI------ILAS------GGPQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQAL-GLH 235 (529)
T ss_dssp ---HH------HHHT------THHH-HHHHHHHHCCCHHHHHHHHHHHHHHTTST------THHHHHHHTTHHHHH-HTT
T ss_pred ---HH------HHHC------CCHH-HHHHHHHhCChHHHHHHHHHHHHHHhcCc------ccHHHHHHCCCHHHH-HHH
Confidence 00 0000 1112 2223455544 567888999999886421 1122 234433 477
Q ss_pred ccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 806 LHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+++.++.||..|+++|++++..+.-.. .+..+++.|...+.+++..||..|+|+|+|++..-..+...
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~--------- 303 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM--------- 303 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHH---------
T ss_pred HhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH---------
Confidence 888999999999999999975432211 13578899999999999999999999999998731100000
Q ss_pred cccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCC-ccchhhHH
Q 035871 886 NANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGN-VKVQWNVC 964 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n-~KVRWNAc 964 (1127)
......+..|++. +....+++.|+.+|+++||||...-+... ..........+++.|++.+.+++ ..||-.||
T Consensus 304 ~~~~~~v~~L~~l-l~~~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 304 VCQVGGIEALVRT-VLRAGDREDITEPAICALRHLTSRHQEAE-----MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp HHHTTHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTSSSTTHH-----HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHcCChHHHHHH-HHccCCHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHcCChhHHHHHhccccchHHHHHHH
Confidence 0001123444432 22224557899999999999952110000 00000111245788999998876 59999999
Q ss_pred HHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhc
Q 035871 965 RALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 965 ~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
.+|+|+..++... ..-....+++.|+.++.+ .+++||..|+.|++... ...|....++....+.+|.++.
T Consensus 378 ~~l~nl~~~~~~~--~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~n~~--~~~~~~~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 378 GLIRNLALCPANH--APLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQ--FVEGVRMEEIVEGCTGALHILA 447 (529)
T ss_dssp HHHHHHTTSGGGH--HHHHHTTHHHHHHHHHHH-HHHHHC-------------CBTTBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcChhhh--HHHHHcCCHHHHHHHHHH-HhHHHHHHHhcccCchh--hhccccHHHHHHHHHHHHHHHh
Confidence 9999998664322 000123578999999964 88999999999998511 2235556778788888888874
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-10 Score=135.73 Aligned_cols=228 Identities=17% Similarity=0.139 Sum_probs=143.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
|-.++.++++.|+..||.||+++.... .+.... ++..| ..++.++++.|+..|+++||+++....-...
T Consensus 256 L~~LL~~~~~~v~~~a~~aL~~l~~~~-----~~~~~~v~~~g~i~~L-v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 256 LVRLLHHNDPEVLADSCWAISYLTDGP-----NERIEMVVKKGVVPQL-VKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHSSC-----HHHHHHHHTTTCHHHH-HHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhhh-----hhhHHHHHhccchHHH-HHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 445678889999999999999975432 222222 23333 3667899999999999999999742211111
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhH
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNA 913 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnA 913 (1127)
...-..+++.|...+.+++..||..|+|+|+||+..-..... ..+....+..|++.+ ..++.+||..|
T Consensus 330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~---------~v~~~g~i~~Lv~lL---~~~~~~v~~~A 397 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ---------QVVNHGLVPFLVGVL---SKADFKTQKAA 397 (529)
T ss_dssp HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHH---------HHHHTTHHHHHHHHH---HSSCHHHHHHH
T ss_pred HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHH---------HHHhcCcHHHHHHHh---cCCCHHHHHHH
Confidence 111123456677788999999999999999999853111000 011112233343321 24555899999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHH----
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFS---- 989 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~---- 989 (1127)
+.||+|+...-+.++. ....-..+|+.|++.++.++.+++-++..||.|+++-..-.-....... .|.
T Consensus 398 ~~aL~nl~~~~~~~~~-------~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~-~iee~gg 469 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQI-------VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSI-MIEECGG 469 (529)
T ss_dssp HHHHHHHHHHSCHHHH-------HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC
T ss_pred HHHHHHHHcCCCHHHH-------HHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHH-HHHHCCc
Confidence 9999999633222110 0001234688999999999999999999999999853110000000111 111
Q ss_pred -HHHHHHhcCCChHHHHHHHHHhc
Q 035871 990 -ILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 990 -~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.-+..|++++|..|+-.|..-|-
T Consensus 470 l~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 470 LDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12455678899999998888775
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-10 Score=139.44 Aligned_cols=229 Identities=15% Similarity=0.039 Sum_probs=140.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccC-CC-HhHHHHHHHHHhhhhccc-cc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHD-DV-ASVRSAACRAIGVISCFP-QV 830 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~D-e~-~~VRaAA~RALGvlv~~p-~L 830 (1127)
|-..+.+.++.+|..||.||++|.... .+.+. ..+..|+ .++.+ ++ ..||..|+++||+++... .-
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~ 477 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNN-----YKNKMMVCQVGGIEALV-RTVLRAGDREDITEPAICALRHLTSRHQDA 477 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTHHHHHH-HHHHHHTTCHHHHHHHHHHHHHTTSSSTTH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCC-----HHHHHHHHHCCCHHHHH-HHHHccCCHHHHHHHHHHHHHHHHhcCchH
Confidence 335667889999999999999986532 11121 1334344 34443 34 489999999999996321 10
Q ss_pred c--cchHHHHHHHHHHHHhcCCCCc-chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh------
Q 035871 831 S--QSAEIIDKFIHAVEINTHDPLV-SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN------ 901 (1127)
Q Consensus 831 ~--~d~~fv~~ai~aLl~~l~D~~~-~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~------ 901 (1127)
. .....-...++.|+..+.+++. .||..|+|+|+||+..-.. ... .+....+..|++.+-.
T Consensus 478 ~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~---------i~~~g~i~~Lv~lL~~~~~~~~ 547 (780)
T 2z6g_A 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAP---------LREQGAIPRLVQLLVRAHQDTQ 547 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHH---------HHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHH---------HHHCCCHHHHHHHHHhcchhHH
Confidence 0 0011112346788888888776 9999999999999842110 000 0000112222221110
Q ss_pred -----------hcc--CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 902 -----------LTK--DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 902 -----------a~~--D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
... ..+.|+..|++||++|...- ++ ........+|+.|++.+.+++..||-+|+.||+
T Consensus 548 ~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~-------~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HN-------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 618 (780)
T ss_dssp HTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HH-------HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hh-------HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 011 12458889999999986210 00 000112446789999999999999999999999
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
++..++..... =....+++.|+.++ +++|..||..|+.||....
T Consensus 619 ~L~~~~~~~~~--i~~~g~i~~L~~Ll-~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 619 ELAQDKEAAEA--IEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHTSHHHHHH--HHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHH--HHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 99765432100 00112467788887 5799999999999997443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-10 Score=131.99 Aligned_cols=348 Identities=15% Similarity=0.117 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHhcCC--ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhh
Q 035871 560 LLVAAISCLTAALSTSP--APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIM 637 (1127)
Q Consensus 560 l~VaaL~cL~avls~~~--~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~ 637 (1127)
.+..|+..+-.+++.+. |..++. ..|.++.|+++...+....++.||..+|..++.+.+.-.
T Consensus 92 ~q~~a~~~~rklLs~~~~~~i~~ii----------------~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 92 SQLQATQAARKLLSREKQPPIDNII----------------RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHH----------------HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHH----------------HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 44567777777776554 222221 236788888887766667899999999999998876544
Q ss_pred hhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcch
Q 035871 638 SSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSD 716 (1127)
Q Consensus 638 ~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~ 716 (1127)
....+ .....+..+|+. .+ ..+..+|+..|..+.. |.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s---~~-----------------~~v~e~A~~aL~nLa~-----------------~~~---- 194 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLAS---PH-----------------AHISEQAVWALGNIAG-----------------AGS---- 194 (529)
T ss_dssp HHHHHTTHHHHHHHHTTC---SC-----------------HHHHHHHHHHHHHHHT-----------------TCH----
T ss_pred HHHHHCCCHHHHHHHHcC---CC-----------------HHHHHHHHHHHHHHhc-----------------cCH----
Confidence 33222 112233334321 11 1445556665554321 000
Q ss_pred hhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-----hhHHHHHHHHHhccchhHHhhcch
Q 035871 717 CIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-----SMVRTAAVTCFAGITSSVFFSLLK 791 (1127)
Q Consensus 717 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-----~~VRaaAc~cLa~Igs~~f~~Lp~ 791 (1127)
.++ . ..++.+. +. .|..++..++ ..+...++.+|+++....-...+.
T Consensus 195 -----------~~r--------~--~i~~~g~------i~-~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 246 (529)
T 3tpo_A 195 -----------AFR--------D--LVIKHGA------ID-PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246 (529)
T ss_dssp -----------HHH--------H--HHHHTTC------HH-HHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH
T ss_pred -----------HHH--------H--HHHHcCC------cH-HHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH
Confidence 000 0 0001110 11 2223333332 245666777777753211111111
Q ss_pred hHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 792 ETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 792 ~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
.....++..| ..+++++++.|+..|+++|+.++..+.-......-..+++.|...+.+++..|+..|+++||||+..--
T Consensus 247 ~~~~~~lp~L-~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 247 DAVEQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHHHH-HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHhhHHHHH-HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence 2223455544 477899999999999999999975332111111112346778888899999999999999999974200
Q ss_pred hcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHh
Q 035871 872 HCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSC 951 (1127)
Q Consensus 872 ~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~ 951 (1127)
..... .+....+..|++. + ...++.||.+|+.+|+||...-... .....-..+++.|+..
T Consensus 326 ~~~~~---------i~~~g~l~~L~~L-L--~~~~~~i~~~a~~aL~nl~~~~~~~--------~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 326 EQTQK---------VIDAGALAVFPSL-L--TNPKTNIQKEATWTMSNITAGRQDQ--------IQQVVNHGLVPFLVGV 385 (529)
T ss_dssp HHHHH---------HHHTTGGGGHHHH-T--TCSSHHHHHHHHHHHHHHHTSCHHH--------HHHHHHTTHHHHHHHH
T ss_pred HHHHH---------HhhcccHHHHHHH-H--cCCCHHHHHHHHHHHHHHhcccHHH--------HHHHHhcCcHHHHHHH
Confidence 00000 0000111122221 1 2455689999999999996211100 0001123477889999
Q ss_pred hccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 952 VTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 952 l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
+.+++.+||-+||+||+|+..+.+......=...-+++.|+.+| ++++-+|+..|..||...
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 99999999999999999997542110000000122578999999 578999999999999743
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=132.23 Aligned_cols=416 Identities=11% Similarity=0.051 Sum_probs=234.0
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhHhcccCCC--CC-CCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 498 GIIYLIQRETHDRLLASLFKILMPLISCTPYSR--MP-GELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 498 ~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~R--L~-~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
.|+..|.. .+..+...++++|..|....+..+ +. .+.++.+++ .+... .+. .++..|..+|..+..
T Consensus 18 ~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~----~L~~~----~~~-~~~~~A~~~L~~Ls~- 86 (644)
T 2z6h_A 18 ELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR----TMQNT----NDV-ETARCTAGTLHNLSH- 86 (644)
T ss_dssp HHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHH----HHHSC----CCH-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHH----HHhcC----CCH-HHHHHHHHHHHHHhc-
Confidence 34555555 466799999999999987765311 11 234444444 33321 122 255567777764332
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHH
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILK 653 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~ 653 (1127)
.+ +....+. ..+.+..|+++...+ ...+|.+|+.+|..++.+++.......+ .....+.++|+
T Consensus 87 ~~---~~~~~i~------------~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~ 150 (644)
T 2z6h_A 87 HR---EGLLAIF------------KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150 (644)
T ss_dssp SH---HHHHHHH------------TTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG
T ss_pred Ch---hhHHHHH------------HcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC
Confidence 21 1111111 124566666665433 3689999999999999886543332221 22233334432
Q ss_pred hhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccc
Q 035871 654 AASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQES 733 (1127)
Q Consensus 654 ~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~ 733 (1127)
. .+ .+....++..|..+ .. +... .
T Consensus 151 ~---~~-----------------~~~~~~a~~~L~~L----a~--~~~~--------------------------~---- 174 (644)
T 2z6h_A 151 K---TN-----------------VKFLAITTDCLQIL----AY--GNQE--------------------------S---- 174 (644)
T ss_dssp C---CC-----------------HHHHHHHHHHHHHH----HT--TCHH--------------------------H----
T ss_pred c---CC-----------------HHHHHHHHHHHHHH----Hh--cCcH--------------------------H----
Confidence 1 00 13333333333322 10 0000 0
Q ss_pred hhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCC-hhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhcc
Q 035871 734 SEDIKESAKAFQSGSEQWSEMIEKHMPLILQHIS-SMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALH 807 (1127)
Q Consensus 734 ~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~-~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~ 807 (1127)
.. ...+. ..++ .|..++++.+ ..++..++.+|.+++... +.+.. ++.. +..++.
T Consensus 175 ~~------~i~~~------g~v~-~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~------~~~~~l~~~g~l~~-L~~ll~ 234 (644)
T 2z6h_A 175 KL------IILAS------GGPQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVEAGGMQA-LGLHLT 234 (644)
T ss_dssp HH------HHHHT------THHH-HHHHHHTTCCCHHHHHHHHHHHHHHTTCT------THHHHHHHTTHHHH-HHTTTT
T ss_pred HH------HHHHc------CChH-HHHHHHHcCChHHHHHHHHHHHHHHhcCc------ccHHHHHHCCCHHH-HHHHHh
Confidence 00 00010 1122 2334555554 578899999999886421 12222 3443 347778
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA 887 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i 887 (1127)
+.++.||..|+++|++++....-. ..+..+++.|+..+.+++..||..|+|+|+||+..-..+... .+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~---------v~ 302 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM---------VC 302 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH---------HH
T ss_pred cCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH---------HH
Confidence 889999999999999997433211 123578899999999999999999999999998731110000 01
Q ss_pred cHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCC-ccchhhHHHH
Q 035871 888 NSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGN-VKVQWNVCRA 966 (1127)
Q Consensus 888 s~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n-~KVRWNAc~A 966 (1127)
....+..|++.+. ...+++.|+.+|+++||||...-.... ..+.......+++.|++.+.+.+ ..||-.||.+
T Consensus 303 ~~g~v~~Lv~lL~-~~~~~~~v~~~a~~aL~nL~~~~~~~~-----~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 303 QVGGIEALVRTVL-RAGDREDITEPAICALRHLTSRHQEAE-----MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp HTTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTSSSTTHH-----HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcCCchHH-----HHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 1112444444321 223457999999999999952110000 00000112357889999998765 6999999999
Q ss_pred HHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhc
Q 035871 967 LSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 967 LGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
|+|+..++... ..=....+++.|+.++.+ .+++||..|+.|++... ...|....+|..+.+.+|.++.
T Consensus 377 L~nLa~~~~~~--~~i~~~~~i~~Lv~lL~~-~~~~vr~~a~~al~n~~--~~~~~~~~~v~~~a~~aL~~La 444 (644)
T 2z6h_A 377 IRNLALCPANH--APLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQ--FVEGVRMEEIVEGCTGALHILA 444 (644)
T ss_dssp HHHHTTSGGGH--HHHHHTTHHHHHHHHHHH-HHHHHTTC------------CCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHH--HHHHHcCCHHHHHHHHhc-cchhhhhHhhhccccch--hcccccHHHHHHHHHHHHHHHh
Confidence 99998765332 000123578999999964 78999999999998521 2234456778888888888874
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=125.80 Aligned_cols=435 Identities=13% Similarity=0.052 Sum_probs=230.7
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 035871 435 LMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLAS 514 (1127)
Q Consensus 435 Llt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtq 514 (1127)
.+..++.++++.+|..|+.+|..+-.+.... ..+.+. ...-..|+..|....+..+...
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~--------------------~~~i~~Lv~~L~~~~~~~~~~~ 79 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRS--------------------PQMVSAIVRTMQNTNDVETARC 79 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTC--------------------HHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhC--------------------cchHHHHHHHHhcCCCHHHHHH
Confidence 3445778999999999999999887663210 011100 1233456666666567778888
Q ss_pred HHHHHHHhHhcccCCCC---CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhc
Q 035871 515 LFKILMPLISCTPYSRM---PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISA 591 (1127)
Q Consensus 515 lLKcLa~LVq~TPY~RL---~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ss 591 (1127)
..++|..|..... .|- ..|.++.+++. +.. .| ..++..++.+|..+....+... ..+.
T Consensus 80 a~~~L~~ls~~~~-~~~~i~~~g~i~~L~~l----L~~-----~~-~~v~~~a~~~L~~l~~~~~~~~---~~i~----- 140 (529)
T 1jdh_A 80 TAGTLHNLSHHRE-GLLAIFKSGGIPALVKM----LGS-----PV-DSVLFYAITTLHNLLLHQEGAK---MAVR----- 140 (529)
T ss_dssp HHHHHHHHTTSHH-HHHHHHHTTHHHHHHHH----TTC-----SC-HHHHHHHHHHHHHHHHHCTTHH---HHHH-----
T ss_pred HHHHHHHHHcCch-hHHHHHHcCCHHHHHHH----HcC-----CC-HHHHHHHHHHHHHHhcCCcchH---HHHH-----
Confidence 8888888754321 111 13455555542 221 12 2366677788887766533221 1111
Q ss_pred CCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHHhhCCCCcccccCCCCCC
Q 035871 592 GSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILKAASPEVPAKAWKGHVGN 670 (1127)
Q Consensus 592 g~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~~~~~~~~~~~~~g~~~~ 670 (1127)
..|.+..|++.... ....+|..+..+|..++...+........ .....+..+|+....
T Consensus 141 -------~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~------------- 199 (529)
T 1jdh_A 141 -------LAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY------------- 199 (529)
T ss_dssp -------HHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-------------
T ss_pred -------HcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh-------------
Confidence 12345555555543 23567777777888888766544332222 122334444433211
Q ss_pred CccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhh
Q 035871 671 TAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQ 750 (1127)
Q Consensus 671 ~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~ 750 (1127)
+....++.++|..+ .. .|... . ..++.
T Consensus 200 ------~~~~~~a~~~L~~l----~~-----------------------------~~~~~----~------~~~~~---- 226 (529)
T 1jdh_A 200 ------EKLLWTTSRVLKVL----SV-----------------------------CSSNK----P------AIVEA---- 226 (529)
T ss_dssp ------HHHHHHHHHHHHHH----TT-----------------------------STTHH----H------HHHHT----
T ss_pred ------HHHHHHHHHHHHHH----hc-----------------------------CcccH----H------HHHHC----
Confidence 12333344444322 10 00000 0 00111
Q ss_pred hHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccc-
Q 035871 751 WSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ- 829 (1127)
Q Consensus 751 W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~- 829 (1127)
.+++ .|...++++++.+|..++.+|+++.... .. .+....++..+ ..+++++++.||..|+++|++++....
T Consensus 227 --g~~~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~--~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 227 --GGMQ-ALGLHLTDPSQRLVQNCLWTLRNLSDAA-TK--QEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp --THHH-HHHTTTTSSCHHHHHHHHHHHHHHHTTC-TT--CSCCHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred --CCHH-HHHHHHhCCChHHHHHHHHHHHHHhcCC-hh--hHHHHhHHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 1122 2334567778999999999999986432 11 11122455544 477799999999999999999965321
Q ss_pred cccchHHHHHHHHHHHHhcCC--CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-C
Q 035871 830 VSQSAEIIDKFIHAVEINTHD--PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-G 906 (1127)
Q Consensus 830 L~~d~~fv~~ai~aLl~~l~D--~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~ 906 (1127)
.+. ...-...++.|+..+.+ ++..||..|.++|+||+..-..... .. ...+....+..| ++..++ +
T Consensus 300 ~~~-~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~---~~i~~~~~i~~L----~~lL~~~~ 368 (529)
T 1jdh_A 300 NKM-MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM---AQ---NAVRLHYGLPVV----VKLLHPPS 368 (529)
T ss_dssp HHH-HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH---HH---HHHHHTTCHHHH----HHTTSTTC
T ss_pred HHH-HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHH---HH---HHHHHcCChhHH----HHHhcccc
Confidence 111 11112345666666654 3479999999999999853100000 00 000000112233 233443 3
Q ss_pred -chhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh----------------
Q 035871 907 -DKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN---------------- 969 (1127)
Q Consensus 907 -DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn---------------- 969 (1127)
+.||..|+.+|+|+...-.. .....-..+++.|++.+.+++.+||-.||+|++|
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~~---------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~ 439 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPAN---------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGGG---------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcChhh---------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence 38999999999999731110 1111123578889999988889999888888777
Q ss_pred ------hhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 970 ------LFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 970 ------l~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
+..++... ..=....+++.|+.++. +++..||..|+.||+.
T Consensus 440 ~~al~~L~~~~~~~--~~l~~~~~v~~l~~ll~-~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 440 TGALHILARDVHNR--IVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCE 486 (529)
T ss_dssp HHHHHHHTTSHHHH--HHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchHH--HHHhccCCccHHHHHHc-CCchHHHHHHHHHHHH
Confidence 21111000 00001224578888885 5788999999999873
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-10 Score=115.79 Aligned_cols=188 Identities=20% Similarity=0.150 Sum_probs=127.6
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-cccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~ 832 (1127)
|...++++++.+|..|+.+|+++.... .+.+. .++.. +..+++++++.||..|+++|++++. .+..+.
T Consensus 49 L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~-l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 49 LVKLLTSTDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEV-LVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH-HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCHHH-HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445678889999999999999987531 11222 23443 4477889999999999999999973 222211
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKS 911 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRs 911 (1127)
...-..+++.|+..+.+++..||..|+|+|+||+..-..... ..+....+..|++ ..+ +++.||.
T Consensus 123 -~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~---------~~~~~~~i~~L~~----ll~~~~~~v~~ 188 (252)
T 4hxt_A 123 -AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK---------AIVDAGGVEVLVK----LLTSTDSEVQK 188 (252)
T ss_dssp -HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------HHHHTTHHHHHHH----HTTCSCHHHHH
T ss_pred -HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------HHHHCcCHHHHHH----HHCCCCHHHHH
Confidence 111234678888999999999999999999999863110000 0011122334433 334 4458999
Q ss_pred hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 912 NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 912 nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
+|+++|+|+...-+. . .....-..+++.|++.+.+++.+||.+|+.+|+|+..+.
T Consensus 189 ~a~~~L~~l~~~~~~-~-------~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 189 EAARALANIASGPTS-A-------IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTSBHH-H-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHH-H-------HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 999999999731100 0 000112346889999999999999999999999998764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-09 Score=127.93 Aligned_cols=432 Identities=13% Similarity=0.072 Sum_probs=243.7
Q ss_pred ChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhH
Q 035871 444 CLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLI 523 (1127)
Q Consensus 444 s~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LV 523 (1127)
.+.+|..|.-+++-+++..+ +=+ + ++ - |-.... -.+.......+..-....+-.++++.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~--~~~-~--~~-----~---~~~~~~--------~~~~~~~~~~~~~~~~~a~~alt~i~ 275 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMY--YDE-A--KA-----R---FTDQID--------EYIKDKLLAPDMESKVRVTVAITALL 275 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCC--SHH-H--HH-----H---HHHHHH--------HHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhc--cch-h--HH-----H---HHHHHH--------HHHHHHhccCChHhHHHHHHHHHHHh
Confidence 56899999999999999864 111 1 11 0 111111 12222334455556677788888888
Q ss_pred hcccCC----CCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCc
Q 035871 524 SCTPYS----RMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKR 599 (1127)
Q Consensus 524 q~TPY~----RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~ 599 (1127)
+.+|-. -+..|.++.++.-+ .+ . |. .++-.|..+|+...+. +++...+... .
T Consensus 276 ~g~~~~~~~~~~~~G~v~~li~Ll----~s--~---~~-~~q~~A~~al~~aa~~----~~~R~~I~~~----------g 331 (810)
T 3now_A 276 NGPLDVGNQVVAREGILQMILAMA----TT--D---DE-LQQRVACECLIAASSK----KDKAKALCEQ----------G 331 (810)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHHH----HS--S---CH-HHHHHHHHHHHHHTTS----HHHHHTTHHH----------H
T ss_pred cCCHHHHHHHHhccchHHHHHHHh----CC--C---CH-HHHHHHHHHHHHHcCC----cHHHHHHHHc----------C
Confidence 877631 12457777666532 22 1 22 2444666667664332 2232222110 0
Q ss_pred chhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhC------hhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCcc
Q 035871 600 SGVLFTLLQCSERLASPAICFESLQALRAVSHNY------PNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAG 673 (1127)
Q Consensus 600 s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~y------p~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~ 673 (1127)
..+|..+++ +....+|..|+-.|+.++..+ +.+...-.+.+...+.++|..... | .
T Consensus 332 v~~L~~Ll~----s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~-d------------~- 393 (810)
T 3now_A 332 VDILKRLYH----SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGK-D------------K- 393 (810)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSC-C------------S-
T ss_pred cHHHHHHHc----CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCC-C------------H-
Confidence 023444433 222468999999999988533 222222234556667777643210 1 0
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHH
Q 035871 674 FIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSE 753 (1127)
Q Consensus 674 l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~ 753 (1127)
.++..|+..|..+ +. +|..+. ++... ..
T Consensus 394 ----~v~~~AveaLayL----S~-----------------------------~~~vk~-------------~lv~d--~g 421 (810)
T 3now_A 394 ----DIRRWAADGLAYL----TL-----------------------------DAECKE-------------KLIED--KA 421 (810)
T ss_dssp ----SHHHHHHHHHHHH----TT-----------------------------SHHHHH-------------HHHHC--HH
T ss_pred ----HHHHHHHHHHHHH----hC-----------------------------CcHHHH-------------HHHHc--cc
Confidence 2333444444322 00 000000 00000 01
Q ss_pred HHHhhHHHHHccCChhHHHHHHHHHhccchhH--------------Hhhc------chh----HH---H-----HHHHHH
Q 035871 754 MIEKHMPLILQHISSMVRTAAVTCFAGITSSV--------------FFSL------LKE----TQ---E-----FIISSL 801 (1127)
Q Consensus 754 iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~--------------f~~L------p~~----~q---~-----~~i~~L 801 (1127)
++. .|-.++..+++.++..|..+|+||.... |... |.+ .+ . .+++.|
T Consensus 422 ~Ip-~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L 500 (810)
T 3now_A 422 SIH-ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL 500 (810)
T ss_dssp HHH-HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hHH-HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence 122 2334556778999999999999997632 1000 000 01 1 234434
Q ss_pred HhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 802 IDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 802 ll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..+++..++.||..|+++||+++..+..+. ...-..+++.|+..+.+.+..+|..|+|||+||+-.--. +..+..
T Consensus 501 -V~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~-~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---~~~~~~ 575 (810)
T 3now_A 501 -CALAKTESHNSQELIARVLNAVCGLKELRG-KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---EVSFSG 575 (810)
T ss_dssp -HHHHTCCCHHHHHHHHHHHHHHHTSHHHHH-HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---HHHTTT
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---hhhhcc
Confidence 477788999999999999999975444221 111234678888888888899999999999999853110 000110
Q ss_pred CCcccccHHHHHHHHHHHHhhcc-CCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 882 SIDSNANSHLMASLTESALNLTK-DGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~-D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
......+..|++ +.. |.+ ..+.+|++||+||...-+.. .....-+.+++.|+..+.+++..|
T Consensus 576 ----~~~~~aIppLv~----LL~~~~~~l~~~eAl~AL~NLa~~~d~~--------~~~Ii~aG~l~~Lv~LL~s~~~~V 639 (810)
T 3now_A 576 ----QRSLDVIRPLLN----LLQQDCTALENFESLMALTNLASMNESV--------RQRIIKEQGVSKIEYYLMEDHLYL 639 (810)
T ss_dssp ----HHHHHTHHHHHH----TTSTTSCHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHHHHHSCCTTH
T ss_pred ----hhhhcHHHHHHH----HhCCCCcHHHHHHHHHHHHHHhcCCHHH--------HHHHHHcCCHHHHHHHHcCCCHHH
Confidence 000123444443 333 323 45679999999997321100 001122357888999999999999
Q ss_pred hhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 960 QWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
|-+|+.+|+|+..++.....-. -...+++.|+.++. ..+.+||..|+.||+..
T Consensus 640 q~~A~~~L~NLa~~~~~~~~~v-~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanL 692 (810)
T 3now_A 640 TRAAAQCLCNLVMSEDVIKMFE-GNNDRVKFLALLCE-DEDEETATACAGALAII 692 (810)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHH-SSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHH-hccCcHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 9999999999998765431100 01247889999985 58899999999999843
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-09 Score=124.17 Aligned_cols=420 Identities=17% Similarity=0.185 Sum_probs=240.0
Q ss_pred hhhhhhcCCChhHHHHH-HHHHHHHhcCCc--hhhhhhhhhcccc----CCcccccchHHHHHHHHHHH----HHHHHHH
Q 035871 435 LMTCLLFDPCLKARMAS-ASTLAAMLDGPS--TVFLQVAEYKESI----KCGSFMPLSTSYGHIIMQLH----NGIIYLI 503 (1127)
Q Consensus 435 Llt~iL~Dps~KvR~aA-~~~LsaLL~gsk--~~llq~AE~~es~----~~~SFTsfS~tLg~~l~eLH----r~Ll~aL 503 (1127)
-+.-.|..++...|..+ ..++..+.-|-. ..|.++-+.-.+. ++..|.-+.. ++..--++. .+|...|
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~-~~~~~~e~~~l~~n~l~kdL 95 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMN-YAKSQPDMAIMAVNSFVKDC 95 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHH-HHHHSHHHHHTTHHHHGGGS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HcccCchHHHHHHHHHHHHc
Confidence 34455677777677665 455556666632 2344443322111 1112222211 111111111 1222334
Q ss_pred hcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHH
Q 035871 504 QRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQ 583 (1127)
Q Consensus 504 ~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~ 583 (1127)
++ .++.+...++++++.+. .+++.+.++..+...+.+ .+.+ +|..|..|+..+....|-.-+
T Consensus 96 ~~-~n~~ir~~AL~~L~~i~--------~~~~~~~l~~~l~~~L~d-----~~~~-VRk~A~~al~~i~~~~p~~~~--- 157 (591)
T 2vgl_B 96 ED-PNPLIRALAVRTMGCIR--------VDKITEYLCEPLRKCLKD-----EDPY-VRKTAAVCVAKLHDINAQMVE--- 157 (591)
T ss_dssp SS-SSHHHHHHHHHHHHTCC--------SGGGHHHHHHHHHHHSSC-----SCHH-HHHHHHHHHHHHHHSSCCCHH---
T ss_pred CC-CCHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHcCC-----CChH-HHHHHHHHHHHHHhhChhhcc---
Confidence 44 45556677788887764 356777777766665532 2333 777888888888775432111
Q ss_pred HHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccc
Q 035871 584 MFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKA 663 (1127)
Q Consensus 584 ~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~ 663 (1127)
..+|+..+.+... +..+.||..|+.+|..++.+.|... ++......+..+++.....+ .
T Consensus 158 ---------------~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~--~~~l~~~~~~~Ll~~l~~~~---~ 216 (591)
T 2vgl_B 158 ---------------DQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSN--LLDLNPQNINKLLTALNECT---E 216 (591)
T ss_dssp ---------------HHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCC--SCCCHHHHHHHHHHHHHHCC---H
T ss_pred ---------------cccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCcc--chhccHHHHHHHHHcCCCCC---c
Confidence 0124444444443 4557899999999999998776431 01111111222222110000 0
Q ss_pred cCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhh
Q 035871 664 WKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKA 743 (1127)
Q Consensus 664 ~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 743 (1127)
.+ +| ..+++|.. + .+.....
T Consensus 217 -----------~~-q~--~il~~l~~----l-----------------------------------~~~~~~~------- 236 (591)
T 2vgl_B 217 -----------WG-QI--FILDCLSN----Y-----------------------------------NPKDDRE------- 236 (591)
T ss_dssp -----------HH-HH--HHHHHHHT----S-----------------------------------CCCSHHH-------
T ss_pred -----------hH-HH--HHHHHHHH----h-----------------------------------CCCChHH-------
Confidence 11 22 12222211 0 0000000
Q ss_pred hhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchh------HHhhcchhHHHHHHHHHHhhhccCCCHhHHHHH
Q 035871 744 FQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSS------VFFSLLKETQEFIISSLIDSALHDDVASVRSAA 817 (1127)
Q Consensus 744 ~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~------~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA 817 (1127)
. ..+++.++ ..++|.++.|+-.|+.|+..++.. .+..+ -..+...|+ .+ .++++.||..|
T Consensus 237 ---~----~~~l~~l~-~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~----~~~~~~~L~-~L-~~~d~~vr~~a 302 (591)
T 2vgl_B 237 ---A----QSICERVT-PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML----LKKLAPPLV-TL-LSGEPEVQYVA 302 (591)
T ss_dssp ---H----HHHHHHHT-TCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH----HHHTHHHHH-HH-TTSCHHHHHHH
T ss_pred ---H----HHHHHHHH-HHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH----HHHHHHHHH-HH-hcCCccHHHHH
Confidence 0 23444444 367899999999999999998631 11110 011222232 33 35889999999
Q ss_pred HHHHhhhhc-ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHH
Q 035871 818 CRAIGVISC-FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLT 896 (1127)
Q Consensus 818 ~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~ 896 (1127)
+++|+.++. .|..-.. .+..++...+|+ ..||.+|.+.|+++++.- .+ +.++..|.
T Consensus 303 L~~l~~i~~~~p~~~~~------~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~---------------nv-~~iv~~L~ 359 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQ------EIKVFFVKYNDP-IYVKLEKLDIMIRLASQA---------------NI-AQVLAELK 359 (591)
T ss_dssp HHHHHHHHHHCCSTTTT------CTTTTSCCTTSC-HHHHHHHHHHHHHTCCSS---------------TH-HHHHHHHH
T ss_pred HHHHHHHHHhChHHHHH------HHHhheeccCCh-HHHHHHHHHHHHHHCChh---------------hH-HHHHHHHH
Confidence 999999973 4443221 111122223555 999999999999998531 11 22344444
Q ss_pred HHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccc
Q 035871 897 ESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 897 e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~ 975 (1127)
+. .+| ++.+|..+++++|++..- .+...+.+++.|++.+++++..|+-.+..+++++++..
T Consensus 360 ~~----l~~~d~~~r~~~v~aI~~la~~-------------~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~- 421 (591)
T 2vgl_B 360 EY----ATEVDVDFVRKAVRAIGRCAIK-------------VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY- 421 (591)
T ss_dssp HH----TTSSCHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS-
T ss_pred HH----HhcCCHHHHHHHHHHHHHHHHh-------------ChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHC-
Confidence 33 455 447999999999999722 12346789999999999988899999999999998642
Q ss_pred ccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 976 INLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 976 i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
+.....+++.|+..+.++..-++|..+++.||..
T Consensus 422 -----p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 422 -----PNKYESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp -----CSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred -----cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 1223567899999998899999999999999943
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.06 E-value=8e-11 Score=113.98 Aligned_cols=119 Identities=23% Similarity=0.178 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
...++.+...++|++..||..|+|+||++++. . +..|++ +.+|.| .||..|+++
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------------~-----~~~L~~----~L~d~~~~vR~~A~~a 65 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------------A-----FEPLLE----SLSNEDWRIRGAAAWI 65 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----------------T-----HHHHHH----GGGCSCHHHHHHHHHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------------H-----HHHHHH----HHcCCCHHHHHHHHHH
Confidence 35567788889999999999999999988742 1 122322 234554 799999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||++. + +.+++.|++.+++.+..||..|+.|||+++. ..+++.|+.++.
T Consensus 66 L~~~~---------------~----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------~~a~~~L~~~l~ 114 (131)
T 1te4_A 66 IGNFQ---------------D----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ERVRAAMEKLAE 114 (131)
T ss_dssp HGGGC---------------S----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHTT
T ss_pred HHhcC---------------C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHh
Confidence 99994 2 4578899999999999999999999999873 357889999995
Q ss_pred cCCChHHHHHHHHHhcC
Q 035871 997 DSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~ 1013 (1127)
+++..||..|+.||+.
T Consensus 115 -d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 115 -TGTGFARKVAVNYLET 130 (131)
T ss_dssp -SCCTHHHHHHHHHGGG
T ss_pred -CCCHHHHHHHHHHHHh
Confidence 6889999999999973
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=111.84 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+...|+|+++.+|..|+.+|+.+|... +..| ..+++|+++.||..|+++||.+. + .
T Consensus 17 l~~~L~~~~~~vR~~A~~~L~~~~~~~------------~~~L-~~~L~d~~~~vR~~A~~aL~~~~------~-----~ 72 (131)
T 1te4_A 17 RGSHMADENKWVRRDVSTALSRMGDEA------------FEPL-LESLSNEDWRIRGAAAWIIGNFQ------D-----E 72 (131)
T ss_dssp ----CCSSCCCSSSSCCSSTTSCSSTT------------HHHH-HHGGGCSCHHHHHHHHHHHGGGC------S-----H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCchH------------HHHH-HHHHcCCCHHHHHHHHHHHHhcC------C-----H
Confidence 445788999999999999999998753 1223 36678999999999999999983 2 3
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRAL 917 (1127)
.+++.|+..++|++..||..|+||||++++. +.+..|++. .+|.| .||..|++||
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~--------------------~a~~~L~~~----l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGGE--------------------RVRAAMEKL----AETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH--------------------HHHHHHHHH----TTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--------------------HHHHHHHHH----HhCCCHHHHHHHHHHH
Confidence 5788888888999999999999999999853 123334332 34544 7999999999
Q ss_pred hhh
Q 035871 918 GNL 920 (1127)
Q Consensus 918 GnL 920 (1127)
|+|
T Consensus 129 ~~i 131 (131)
T 1te4_A 129 ETH 131 (131)
T ss_dssp GGC
T ss_pred HhC
Confidence 975
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-07 Score=118.31 Aligned_cols=228 Identities=17% Similarity=0.114 Sum_probs=144.4
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchh--HHhhcchhHHHHHHHHHHhhhcc-CCCHhHHHHHHHHHhhhhcccc-cccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSS--VFFSLLKETQEFIISSLIDSALH-DDVASVRSAACRAIGVISCFPQ-VSQS 833 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~--~f~~Lp~~~q~~~i~~Lll~~~~-De~~~VRaAA~RALGvlv~~p~-L~~d 833 (1127)
+|-.++...++.+|..|+.||++|... .=..++.....-++..|+ .+++ |.+...+..|++||+++...+. .+.
T Consensus 540 ~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv-~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~- 617 (810)
T 3now_A 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL-NLLQQDCTALENFESLMALTNLASMNESVRQ- 617 (810)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH-HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH-HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH-
Confidence 344566777889999999999997432 101111111123555555 4555 4455677899999999976532 111
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhh
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSN 912 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsn 912 (1127)
...-+.+++.|...+.+++..||..|+|+|+||+..-.. ...+. + ....+..| +++.+ ++.+||..
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~-~~~~v-~-------~~g~l~~L----v~LL~s~d~~vq~~ 684 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV-IKMFE-G-------NNDRVKFL----ALLCEDEDEETATA 684 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH-HHHHH-S-------SSSHHHHH----HHGGGCSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH-HHHHH-h-------ccCcHHHH----HHHhcCCCHHHHHH
Confidence 111123567777778899999999999999999853110 00000 0 00123333 22344 44589999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHH--HHHHHHHHHhhccCCccchhhHHHHHHhhhcccc-cc--ccCCCchhHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWL--ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNET-IN--LEDMDWAPSV 987 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~--E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~-i~--~~~~~wa~~v 987 (1127)
|+.||+||...-+. .-.... +..|+.|+..+.+++.++|-.||+||+|+..... .. +.+ .-+
T Consensus 685 Aa~ALanLt~~s~~---------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e----~G~ 751 (810)
T 3now_A 685 CAGALAIITSVSVK---------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE----TDI 751 (810)
T ss_dssp HHHHHHHHHHHCHH---------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHT----STH
T ss_pred HHHHHHHHhCCCHH---------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH----CCC
Confidence 99999999632110 000112 3577789999999999999999999999986421 10 111 136
Q ss_pred HHHHHHHHhcC--CChHHHHHHHHHhcC
Q 035871 988 FSILLLLLRDS--SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 988 ~~~Ll~ll~~~--~NFKVRi~AA~AL~~ 1013 (1127)
++.|+.++.+. ++.||+-.|..||..
T Consensus 752 i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 752 MELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 78999998654 688999999999863
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-07 Score=113.26 Aligned_cols=360 Identities=9% Similarity=0.096 Sum_probs=191.2
Q ss_pred chHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q 035871 617 AICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISG 696 (1127)
Q Consensus 617 ~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g 696 (1127)
.+|..++++|..++..||..+.+|...+...+.+.+...... ...+++...|+..+..+.+.-..
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~al~fl~~~~~~~~~ 325 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQ---------------PKYDILVSKSLSFLTAVTRIPKY 325 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC---------------TTSHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------cCcHHHHHHHHHHHHHHhCcHhH
Confidence 367788899999999999988888888777777776532211 12247777788877665431100
Q ss_pred ccCccccccccccC-CCCcchhhhhhccCCCCc--ccccchhhhhhhhhhhhcchhhhH----HHHHhhHHHHHccC-Ch
Q 035871 697 FKGTEDLLDDKLLD-NPFTSDCIRIKNISSAPL--YEQESSEDIKESAKAFQSGSEQWS----EMIEKHMPLILQHI-SS 768 (1127)
Q Consensus 697 ~~g~~~~~~~~l~d-~~~~s~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~l~~~~W~----~iie~~Lp~~l~d~-~~ 768 (1127)
. .++. .++...-+...-+ |. |..+ ..+.|. +.++. -+.++ .-
T Consensus 326 ----~-----~~~~~~~~l~~li~~~i~---~~m~~~~~--------------d~e~w~~dp~e~i~~----d~e~~d~~ 375 (960)
T 1wa5_C 326 ----F-----EIFNNESAMNNITEQIIL---PNVTLREE--------------DVELFEDDPIEYIRR----DLEGSDTD 375 (960)
T ss_dssp ----H-----GGGCSHHHHHHHHHHTHH---HHHSCCGG--------------GTTTTTTCHHHHHHH----HHHC----
T ss_pred ----H-----HHHcCchHHHHHHHHHhH---HhcCCCHH--------------HHHHHhcCHHHHHHh----ccCccccc
Confidence 0 0000 0011000000000 00 0000 011121 01111 11122 24
Q ss_pred hHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhcc------CCCHhHHHHHHHHHhhhhcc---cc--ccc---ch
Q 035871 769 MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALH------DDVASVRSAACRAIGVISCF---PQ--VSQ---SA 834 (1127)
Q Consensus 769 ~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~------De~~~VRaAA~RALGvlv~~---p~--L~~---d~ 834 (1127)
.+|.+|.++|..+... +++.--..++. .+...+. ++++-.|-||..++|.+... +. ... ..
T Consensus 376 s~R~aa~~~L~~l~~~----~~~~v~~~~l~-~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEK----NEVLVTNIFLA-HMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHH----CHHHHHHHHHH-HHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred CcHHHHHHHHHHHHHH----cchhHHHHHHH-HHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 7899999999876532 22111112222 2222223 56788999999999999632 11 110 00
Q ss_pred HHHHHHHHHHHHhcCCC---CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 835 EIIDKFIHAVEINTHDP---LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 835 ~fv~~ai~aLl~~l~D~---~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
.+..-+.+.++..+.|+ ++-||..|+|+||.+++.+ .++.+..+++..++...|.+ .||
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-----------------~~~~l~~~l~~l~~~L~d~~~~V~ 513 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-----------------TKAQLIELMPILATFLQTDEYVVY 513 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-----------------CHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-----------------CHHHHHHHHHHHHHHhCCCChhHH
Confidence 12221233444455677 8999999999999999753 12345666666666667765 699
Q ss_pred hhHHHHHhhhhhccccCCCCCCCC--CCChhHHHHHHHHHHHhhccCC-----ccchhhHHHHHHhhhccccccccCCCc
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPAS--LGDSRWLERIVQALVSCVTTGN-----VKVQWNVCRALSNLFLNETINLEDMDW 983 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~--~g~~~~~E~~i~aLlk~l~~~n-----~KVRWNAc~ALGnl~~n~~i~~~~~~w 983 (1127)
..|++||.+++.......-+.+.. ..-...++.+++.|++.++..+ .+....+..||+.+...- ...-.+.
T Consensus 514 ~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~--~~~~~p~ 591 (960)
T 1wa5_C 514 TYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS--EDSIQPL 591 (960)
T ss_dssp HHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH--TTTTGGG
T ss_pred HHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH--HHhhhhH
Confidence 999999999986543100000000 0001247889999998887642 225678888998875431 1112246
Q ss_pred hhHHHHHHHHHHhc----CCChHHHHHHHHHhcCCCcc---cccCCchHHHHHHHHHHHHHhccCCCCCCccc
Q 035871 984 APSVFSILLLLLRD----SSNFKIRIQAAAALAVPSSV---SDYGKSFSDVVQGLEHILENLGADHLSAPSSF 1049 (1127)
Q Consensus 984 a~~v~~~Ll~ll~~----~~NFKVRi~AA~AL~~p~~R---~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Ey 1049 (1127)
...+.+.|...+.. ..|-..+..+-.+|+..... ..+...-..++..+...|++ +..+|.+|
T Consensus 592 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~----~~~~~~~~ 660 (960)
T 1wa5_C 592 FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE----DIQEFIPY 660 (960)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT----TCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh----hhHhhHHH
Confidence 67777777766643 34656675556665533221 22222333455555555543 33445444
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-08 Score=115.65 Aligned_cols=227 Identities=19% Similarity=0.139 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhH---HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH-HHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKET---QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII-DKFIH 842 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~---q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv-~~ai~ 842 (1127)
++.++..|+.+|.+|....= -.+.. ...+|..|+ .+++..++.|+..|++||++++.-..-..-..++ ..+++
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV-~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALV-AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHH-HGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHH-HHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHH
Confidence 46789999999999753210 00111 122455454 7788899999999999999996421000001111 24577
Q ss_pred HHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc--hhhhhHHHHHhh
Q 035871 843 AVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD--KIKSNAVRGLGN 919 (1127)
Q Consensus 843 aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D--KVRsnAvRALGn 919 (1127)
.|+.. ++..+..|+..|+.||+||+..-..+..... .....+..|++. +...++.+ .|+.+|+.+|.|
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~--------~~~Gal~~Lv~L-L~~~~~~~~~~v~~~A~~aL~n 360 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC--------AVDGALAFLVGT-LTYRSQTNTLAIIESGGGILRN 360 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH--------HSTTHHHHHHHH-TTCCCSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH--------HhcCcHHHHHHH-hcCCCCcchHHHHHHHHHHHHH
Confidence 88876 5667889999999999999862111100000 011224444332 11111221 499999999999
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhcC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
|...+...+-. .....-..+|+.|++.+.+++.+|+-|||.||+|+-. ++.-.. .=...-+++.|+.++. +
T Consensus 361 Ls~~~a~~~~~-----~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~--~i~~~G~I~~Lv~LL~-s 432 (458)
T 3nmz_A 361 VSSLIATNEDH-----RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE--ALWDMGAVSMLKNLIH-S 432 (458)
T ss_dssp HHHHHTTCHHH-----HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH--HHHHHTHHHHHHTTTT-C
T ss_pred HHhcccCCHHH-----HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHHHHHHHh-C
Confidence 97432211100 0000113468889999999999999999999999973 332110 0012236899999995 6
Q ss_pred CChHHHHHHHHHhcC
Q 035871 999 SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~ 1013 (1127)
++.+||..|+.||..
T Consensus 433 ~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 433 KHKMIAMGSAAALRN 447 (458)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999973
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=113.41 Aligned_cols=376 Identities=12% Similarity=0.087 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q 035871 494 QLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALS 573 (1127)
Q Consensus 494 eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls 573 (1127)
-+-.+|...|++ .++-+...++++++.+.. +++++.++..+..++.+. +.+ +|.+|.-|+..++.
T Consensus 107 l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--------~~~~~~l~~~l~~~L~~~-----~~~-VRk~A~~al~~l~~ 171 (618)
T 1w63_A 107 LMTNCIKNDLNH-STQFVQGLALCTLGCMGS--------SEMCRDLAGEVEKLLKTS-----NSY-LRKKAALCAVHVIR 171 (618)
T ss_dssp HHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHSC-----CHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHcCC-----CHH-HHHHHHHHHHHHHH
Confidence 344566667776 555688889999998862 356777777777777642 333 77788888888877
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHH
Q 035871 574 TSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILK 653 (1127)
Q Consensus 574 ~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~ 653 (1127)
..|..-+ .|+..+.... .+.++.|+.-|+.+|..++.+.|... .++..+...+.++|+
T Consensus 172 ~~p~~v~--------------------~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~~-~~~~~~v~~l~~~L~ 229 (618)
T 1w63_A 172 KVPELME--------------------MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDML-AHFRKLVPQLVRILK 229 (618)
T ss_dssp HCGGGGG--------------------GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHHH-HHHHTTHHHHHHHHH
T ss_pred HChHHHH--------------------HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHH
Confidence 5432111 1221111111 23446788899999999988777642 234443333444443
Q ss_pred hhCC-CCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCccccc
Q 035871 654 AASP-EVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQE 732 (1127)
Q Consensus 654 ~~~~-~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~ 732 (1127)
.... ..+.+-. .+. ..++-.+...+++|..+ . .. +|..
T Consensus 230 ~~~~~~~~~~~~---~~~---~~~~~~q~~il~~L~~l----~----~~------------------------~~~~--- 268 (618)
T 1w63_A 230 NLIMSGYSPEHD---VSG---ISDPFLQVRILRLLRIL----G----RN------------------------DDDS--- 268 (618)
T ss_dssp HHHHSCCCTTTC---SSS---SSCHHHHHHHHHHHHHH----T----TT------------------------CHHH---
T ss_pred HHHcCCCCcccc---ccC---CCCChHHHHHHHHHHHh----C----CC------------------------CHHH---
Confidence 2110 0000000 000 01111222223333211 0 00 0000
Q ss_pred chhhhhhhhhhhhcchhhhHHHHHhhHHH--HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC
Q 035871 733 SSEDIKESAKAFQSGSEQWSEMIEKHMPL--ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV 810 (1127)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~W~~iie~~Lp~--~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~ 810 (1127)
... ...++...+.. ..++.+..|.-.|+.|+..+++.. ..+..++..| ...+.+++
T Consensus 269 --------------~~~-~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~------~l~~~a~~~L-~~~L~~~d 326 (618)
T 1w63_A 269 --------------SEA-MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES------GLRVLAINIL-GRFLLNND 326 (618)
T ss_dssp --------------HHT-THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH------HHHHHHHHHH-HHHHTCSS
T ss_pred --------------HHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH------HHHHHHHHHH-HHHHhCCC
Confidence 000 11223332221 122345689999999999987532 2223455533 35578899
Q ss_pred HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHH
Q 035871 811 ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSH 890 (1127)
Q Consensus 811 ~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~ 890 (1127)
+.||..|.++||.++. .++..+......++..+.|++..||.+|...|.++++. . .+ ..
T Consensus 327 ~~vr~~aL~~L~~i~~-----~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~-------------nv-~~ 385 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQ-----TDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--N-------------NI-RG 385 (618)
T ss_dssp TTTHHHHHHHHHHHHH-----HHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--S-------------ST-HH
T ss_pred CchHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--c-------------cH-HH
Confidence 9999999999999963 23444455567788888999999999999999999873 0 11 23
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhh
Q 035871 891 LMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl 970 (1127)
++..|.+.+ .++++.+|..+++++|.+..-.. ++ .+..++.|++.+++++..|+-.+..++-.+
T Consensus 386 iv~eL~~~l---~~~d~e~r~~~v~~I~~la~k~~----------~~---~~~~v~~ll~lL~~~~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 386 MMKELLYFL---DSCEPEFKADCASGIFLAAEKYA----------PS---KRWHIDTIMRVLTTAGSYVRDDAVPNLIQL 449 (618)
T ss_dssp HHHHHHHHH---HHCCHHHHHHHHHHHHHHHHSSC----------CC---HHHHHHHHHHHHHHTGGGSCSSHHHHHHHH
T ss_pred HHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhC----------cc---HHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 445555543 23556899999999999974221 11 467899999999887778888888999888
Q ss_pred hccccccccCCCchhHHHHHHHHHHhc-CCChHHHHHHHHHhc
Q 035871 971 FLNETINLEDMDWAPSVFSILLLLLRD-SSNFKIRIQAAAALA 1012 (1127)
Q Consensus 971 ~~n~~i~~~~~~wa~~v~~~Ll~ll~~-~~NFKVRi~AA~AL~ 1012 (1127)
+.+. +.....++..|+..+.+ +.+-.++..+++.||
T Consensus 450 i~~~------p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 450 ITNS------VEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHS------CSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HhcC------hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 8642 23456789999999986 344455557899999
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-09 Score=110.17 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=136.6
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISCF-PQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
..++|.++.+|-+|+.+|+.++.. |.+... . +.++++.|...+. |++..||..|+-+||.|+..+...
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-------- 91 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENG-E-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-------- 91 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-C-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--------
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCC-C-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--------
Confidence 456899999999999999998754 554321 2 3678888888895 999999999999999999876532
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccch
Q 035871 882 SIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQ 960 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVR 960 (1127)
+. ..+..++...+...+|+. .||..|..||..+..... .+.+++.|...++++|..||
T Consensus 92 -----~~-~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------------~~~ll~~l~~~l~~~~~~vr 150 (242)
T 2qk2_A 92 -----FS-NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---------------LEAQQESIVESLSNKNPSVK 150 (242)
T ss_dssp -----GH-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHTTCSCHHHH
T ss_pred -----HH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHcCCChHHH
Confidence 21 235556666666777776 799999999999973211 46788999999999999999
Q ss_pred hhHHHHHHhhhcc--ccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 961 WNVCRALSNLFLN--ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 961 WNAc~ALGnl~~n--~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
-+++..||.++.+ +... ..+..+.+.+.|..++ ++++.+||-.|..+|+.
T Consensus 151 ~~~l~~l~~~l~~~~~~~~--~~~~l~~l~p~l~~~l-~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 151 SETALFIARALTRTQPTAL--NKKLLKLLTTSLVKTL-NEPDPTVRDSSAEALGT 202 (242)
T ss_dssp HHHHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Confidence 9999999998754 2110 1134468999999999 56999999999999983
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-06 Score=109.76 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=122.1
Q ss_pred cCChhHHHHHHHHHhccchh---HHhhcch-----hHHHHHHHHHHhhhccCC---CHhHHHHHHHHHhhhhcccccccc
Q 035871 765 HISSMVRTAAVTCFAGITSS---VFFSLLK-----ETQEFIISSLIDSALHDD---VASVRSAACRAIGVISCFPQVSQS 833 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~---~f~~Lp~-----~~q~~~i~~Lll~~~~De---~~~VRaAA~RALGvlv~~p~L~~d 833 (1127)
+++...|.+|.-++|.|... .-..... +-..++... ++..+.|. +|.||++||++||.|.-. + .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~-v~p~l~~~~~~~p~vr~~a~~~lg~~~~~--~--~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKE-IAPDLTSNNIPHIILRVDAIKYIYTFRNQ--L--T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHH-THHHHHCSSCSCHHHHHHHHHHHHHTGGG--S--C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHH-hHHHhcCCCCCCceehHHHHHHHHHHHhh--C--C
Confidence 34557899999999887311 1000000 222333332 33445666 899999999999999642 2 2
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhc-ccccCCCCCCcccccHHHHHHHHHHHHhhccCC----ch
Q 035871 834 AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHC-IDDFAFKPSIDSNANSHLMASLTESALNLTKDG----DK 908 (1127)
Q Consensus 834 ~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~-~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~----DK 908 (1127)
..+...+++.++..+.|++..||..|+|||.++++..... .....+....-...-+.++..|.+ +.+.. .|
T Consensus 491 ~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~----ll~~~~~~~~~ 566 (960)
T 1wa5_C 491 KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA----LILKHGSSPEK 566 (960)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH----HHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHH----HHHhccCCCCc
Confidence 4578889999999999999999999999999999742100 000000000000122344444443 33332 12
Q ss_pred --hhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc----c-CCccchhhHHHHHHhhhccccccccCC
Q 035871 909 --IKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT----T-GNVKVQWNVCRALSNLFLNETINLEDM 981 (1127)
Q Consensus 909 --VRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~----~-~n~KVRWNAc~ALGnl~~n~~i~~~~~ 981 (1127)
....+..||+.+...+..+ + ....+.+++.|+..+. + .+...+-.++-+||.+.+... +....
T Consensus 567 ~~~~e~l~~al~~vv~~~~~~-~--------~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~-~~~~~ 636 (960)
T 1wa5_C 567 LAENEFLMRSIFRVLQTSEDS-I--------QPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ-RQNLP 636 (960)
T ss_dssp HTSCHHHHHHHHHHHHHHTTT-T--------GGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC-GGGHH
T ss_pred ccccHHHHHHHHHHHHHHHHh-h--------hhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-cchHH
Confidence 4457888999887665432 1 1134555555555442 2 355666667888888876510 00111
Q ss_pred CchhHHHHHHHHHHhcC
Q 035871 982 DWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 982 ~wa~~v~~~Ll~ll~~~ 998 (1127)
+..+.+++.+...+..+
T Consensus 637 ~~~~~~~p~~~~iL~~~ 653 (960)
T 1wa5_C 637 LLVDSMMPTFLTVFSED 653 (960)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 23455666666666543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-08 Score=120.81 Aligned_cols=208 Identities=18% Similarity=0.146 Sum_probs=147.0
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.+++++++.+|..+.-++..++.+. .+....+++.+ ..-+.|+|+.||..|.|+||.+. .....+..
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~-----~e~~~l~~n~l-~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l 122 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQ-----PDMAIMAVNSF-VKDCEDPNPLIRALAVRTMGCIR-------VDKITEYL 122 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHS-----HHHHHTTHHHH-GGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccC-----chHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHH
Confidence 3568889999999998888764421 22333455543 45678999999999999999984 34456777
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH-HHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS-HLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~-~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
++.+...+.|+++.||.+|+|||+++... .+ +.+.+ .++..+ ..+.+|.| .|+.+|+.+|+
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~----------~p---~~~~~~~~~~~l----~~lL~d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDI----------NA---QMVEDQGFLDSL----RDLIADSNPMVVANAVAALS 185 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHS----------SC---CCHHHHHHHHHH----HHTTSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhh----------Ch---hhcccccHHHHH----HHHhCCCChhHHHHHHHHHH
Confidence 88899999999999999999999999972 11 11221 233333 34567777 89999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
++..--+... ...+....+..|++.+.+.+.-++-....+|+++...+ ..-...+++.|..++. +
T Consensus 186 ~i~~~~~~~~--------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~------~~~~~~~l~~l~~~l~-~ 250 (591)
T 2vgl_B 186 EISESHPNSN--------LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD------DREAQSICERVTPRLS-H 250 (591)
T ss_dssp HHTTSCCSCC--------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS------HHHHHHHHHHHTTCSC-S
T ss_pred HHHhhCCCcc--------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHc-C
Confidence 9963211100 01235667888888888877766666777777766321 1234678888888885 5
Q ss_pred CChHHHHHHHHHhcC
Q 035871 999 SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~ 1013 (1127)
.|-.||..|+.++..
T Consensus 251 ~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMK 265 (591)
T ss_dssp STTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 778999999999974
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=124.42 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=133.3
Q ss_pred HHHHhhHHHHHccCChhHHHHHHHHHhcc--chhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 753 EMIEKHMPLILQHISSMVRTAAVTCFAGI--TSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 753 ~iie~~Lp~~l~d~~~~VRaaAc~cLa~I--gs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
++++.++| .+.+.++.+|..|+-+||.| |+.. ..++..++.-+..|++..||..|+-+||.+.+
T Consensus 472 ev~e~L~~-~L~dd~~~~~~~AalALGli~vGTgn---------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~---- 537 (963)
T 4ady_A 472 EVYEALKE-VLYNDSATSGEAAALGMGLCMLGTGK---------PEAIHDMFTYSQETQHGNITRGLAVGLALINY---- 537 (963)
T ss_dssp HHHHHHHH-HHHTCCHHHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHhhhhcccCC---------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC----
Confidence 34444444 45666678899999999976 4322 11233333334467778899999999997632
Q ss_pred ccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchh
Q 035871 831 SQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKI 909 (1127)
Q Consensus 831 ~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKV 909 (1127)
++ +..++.++..+ .|.++.||.-|+.+||--+-.. =+...+..|++.+. .+.+|.|
T Consensus 538 g~-----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT----------------Gn~~aIq~LL~~~~--~d~~d~V 594 (963)
T 4ady_A 538 GR-----QELADDLITKMLASDESLLRYGGAFTIALAYAGT----------------GNNSAVKRLLHVAV--SDSNDDV 594 (963)
T ss_dssp TC-----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS----------------CCHHHHHHHHHHHH--HCSCHHH
T ss_pred CC-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC----------------CCHHHHHHHHHHhc--cCCcHHH
Confidence 32 23444444433 5789999999999998444210 11234666766654 2445689
Q ss_pred hhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-ccCCccchhhHHHHHHhhhccccccccCCCchhHHH
Q 035871 910 KSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV-TTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVF 988 (1127)
Q Consensus 910 RsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l-~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~ 988 (1127)
|..||-|||.++ . |++ .++..++..+ +++|+.||++|+.|||.+.... ....++
T Consensus 595 RraAViaLGlI~-------~------g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn--------~~~~ai 649 (963)
T 4ady_A 595 RRAAVIALGFVL-------L------RDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK--------GLQSAI 649 (963)
T ss_dssp HHHHHHHHHHHT-------S------SSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS--------CCHHHH
T ss_pred HHHHHHHHHhhc-------c------CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC--------CcHHHH
Confidence 999999999984 1 222 2344555544 5789999999999999997321 135689
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhcCCC
Q 035871 989 SILLLLLRDSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 989 ~~Ll~ll~~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+.|..+. +|++-.||.+|+.|||-++
T Consensus 650 d~L~~L~-~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 650 DVLDPLT-KDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHH-TCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHc-cCCCHHHHHHHHHHHHHHh
Confidence 9888777 5677789999999998443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=100.62 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=130.5
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccccc-hHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVSQS-AEIID 838 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~~d-~~fv~ 838 (1127)
..+++.+...|.+|+.+|..+-...-.....+. ..++..+ ..++ +|.++.||.+|+.+||.++. .++.+ ..|++
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L-~~~l~kd~~~~V~~~a~~~l~~la~--~l~~~~~~~~~ 97 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSAL-KKVITKDSNVVLVAMAGKCLALLAK--GLAKRFSNYAS 97 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHH--HHGGGGHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHH--HHhhhHHHHHH
Confidence 456788899999999999987543101111222 2345433 4666 59999999999999999972 12221 35788
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRAL 917 (1127)
.+++.|+..+.|++..||..|.-||.++..... + +.++..+ +.+.++ +..||.+++..|
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---------------~-~~ll~~l----~~~l~~~~~~vr~~~l~~l 157 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---------------L-EAQQESI----VESLSNKNPSVKSETALFI 157 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---------------H-HHHHHHH----HHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---------------H-HHHHHHH----HHHHcCCChHHHHHHHHHH
Confidence 899999999999999999999999999986421 1 2233344 333454 448999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
|.++.-..++. ........+++.|.+++.+.+.+||-.|..++|.+..
T Consensus 158 ~~~l~~~~~~~-------~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 158 ARALTRTQPTA-------LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHTTCCGGG-------CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCC-------ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 99764432221 1123568899999999999999999999999999864
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.1e-09 Score=114.75 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=100.5
Q ss_pred HHHHHHH-hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHH
Q 035871 840 FIHAVEI-NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGL 917 (1127)
Q Consensus 840 ai~aLl~-~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRAL 917 (1127)
.++.++. .+.+++..||..|+|+|||+...-..... ..+....+..|++.+ ..+ ++.||.+|+.||
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~---------~vv~~g~l~~Ll~LL---~~~~~~~v~~~A~~AL 149 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE---------QVLGLGALRKLLRLL---DRDACDTVRVKALFAI 149 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH---------HHHHTTHHHHHHHHH---HHCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH---------HHHHCCCHHHHHHHH---ccCCCHHHHHHHHHHH
Confidence 3456667 78899999999999999999842100000 011112244444321 123 458999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHH-HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWL-ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~-E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
+||.+--+.. ...+. ..+++.|+..+.+++.+||-+||+||+++.....-... .--..-+++.|+.+|.
T Consensus 150 snl~~~~~~~---------~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~-~vv~~g~i~~Lv~LL~ 219 (296)
T 1xqr_A 150 SCLVREQEAG---------LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG-TLCSMGMVQQLVALVR 219 (296)
T ss_dssp HHHHTTCHHH---------HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHTTHHHHHHHHHT
T ss_pred HHHHcCCcHH---------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH-HHHHcCCHHHHHHHHc
Confidence 9997422210 00111 35788999999999999999999999999754210000 0011237899999995
Q ss_pred cCCChHHHHHHHHHhcCCC
Q 035871 997 DSSNFKIRIQAAAALAVPS 1015 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~ 1015 (1127)
+++.+||..|+.||+...
T Consensus 220 -~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 220 -TEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp -SCCSTHHHHHHHHHHHHH
T ss_pred -CCChhHHHHHHHHHHHHH
Confidence 578999999999997543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-07 Score=107.52 Aligned_cols=238 Identities=17% Similarity=0.122 Sum_probs=147.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHH-----HHHHHhhhcc-CCCHhHHHHHHHHHhhhhcccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFI-----ISSLIDSALH-DDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~-----i~~Lll~~~~-De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
.|-.++.++++.++..|+.||.+|... ..+.+..+ +..|+ .++. +.++.|+..|+++|++++..+..+
T Consensus 48 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~-----~~~~k~~i~~~G~i~~Lv-~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 48 KLVDLLRSPNQNVQQAAAGALRNLVFR-----STTNKLETRRQNGIREAV-SLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSS-----CHHHHHHHHHTTCHHHHH-HHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHH-HHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 344567788899999999999998542 12334433 34343 6666 778999999999999998766554
Q ss_pred cchHHHHHHHHHHHHhc--------CCC--------CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH-HHHHH
Q 035871 832 QSAEIIDKFIHAVEINT--------HDP--------LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS-HLMAS 894 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l--------~D~--------~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~-~lL~~ 894 (1127)
. .+++.+++.|+..+ .++ +..|+..|+|+|+||+.. ..+... .... ..+..
T Consensus 122 ~--~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~---------i~~~~g~i~~ 189 (457)
T 1xm9_A 122 E--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQT---------MRNYSGLIDS 189 (457)
T ss_dssp H--HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHH---------HTTSTTHHHH
T ss_pred H--HHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHH---------HHHcCCCHHH
Confidence 3 23457888888888 333 345566999999999975 221110 0100 12333
Q ss_pred HH---HHHHhhccCCchhhhhHHHHHhhhhhccccC-----------------------CCCC------------CCC--
Q 035871 895 LT---ESALNLTKDGDKIKSNAVRGLGNLSRFVKYT-----------------------SSSH------------PAS-- 934 (1127)
Q Consensus 895 L~---e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~-----------------------~~~~------------~~~-- 934 (1127)
|+ +..+...+.+++++.||+.+|.|+..-...+ -++. |+.
T Consensus 190 Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
T 1xm9_A 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269 (457)
T ss_dssp HHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCC
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccc
Confidence 33 3222112245689999999999985211000 0000 000
Q ss_pred ----CC-ChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccccCC--Cc--hhHHHHHHHHHHhcCCChHHH
Q 035871 935 ----LG-DSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINLEDM--DW--APSVFSILLLLLRDSSNFKIR 1004 (1127)
Q Consensus 935 ----~g-~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~~~~--~w--a~~v~~~Ll~ll~~~~NFKVR 1004 (1127)
.| ...|...+++.|+..+.+ ++..++=+||+||+|+.....-..... .. ...+++.|..+|. +.+++||
T Consensus 270 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~-~~~~~v~ 348 (457)
T 1xm9_A 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVV 348 (457)
T ss_dssp CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT-CSCHHHH
T ss_pred ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh-CCCHhHH
Confidence 01 112446678888888865 568999999999999975321000000 00 0235689999995 5789999
Q ss_pred HHHHHHhcCC
Q 035871 1005 IQAAAALAVP 1014 (1127)
Q Consensus 1005 i~AA~AL~~p 1014 (1127)
..|+.||+..
T Consensus 349 ~~A~~aL~nl 358 (457)
T 1xm9_A 349 RSGASLLSNM 358 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999844
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.6e-07 Score=106.90 Aligned_cols=237 Identities=13% Similarity=0.142 Sum_probs=152.0
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv 837 (1127)
+-.-++|+++.+|+.|+++||+|+...+ -+.++. .+..++.|.+|.||.+|+.++|.+. .+|.+ +
T Consensus 112 l~kDL~~~n~~vr~lAL~~L~~i~~~~~-------~~~l~~-~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~------v 177 (618)
T 1w63_A 112 IKNDLNHSTQFVQGLALCTLGCMGSSEM-------CRDLAG-EVEKLLKTSNSYLRKKAALCAVHVIRKVPEL------M 177 (618)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHCCHHH-------HHHHHH-HHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG------G
T ss_pred HHHhcCCCCHhHHHHHHHHHHhcCCHHH-------HHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHChHH------H
Confidence 4456789999999999999999986542 123444 3457789999999999999999986 34433 3
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhh---cc-----------ccc---CC-CCCC-cccccHHHHHHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRH---CI-----------DDF---AF-KPSI-DSNANSHLMASLTES 898 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~---~~-----------~~~---~~-~~~~-~~~is~~lL~~L~e~ 898 (1127)
+.+++.+...+.|++..|+..|.++|+.|+..-.. .. .+. .. .++. ....++-....+++.
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 45677777888999999999999999999852100 00 000 00 0000 000011111111111
Q ss_pred HHhhcc-------------------------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 035871 899 ALNLTK-------------------------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT 953 (1127)
Q Consensus 899 aL~a~~-------------------------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~ 953 (1127)
.-.... .+..|...|+++++++. .++...+.+++.|.+.+.
T Consensus 258 L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~--------------~~~~l~~~a~~~L~~~L~ 323 (618)
T 1w63_A 258 LRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK--------------SESGLRVLAINILGRFLL 323 (618)
T ss_dssp HHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC--------------CCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHh
Confidence 111111 11235566666666552 123345678899999999
Q ss_pred cCCccchhhHHHHHHhhhccc-cccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC--chHHHHHH
Q 035871 954 TGNVKVQWNVCRALSNLFLNE-TINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK--SFSDVVQG 1030 (1127)
Q Consensus 954 ~~n~KVRWNAc~ALGnl~~n~-~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~--~~~~V~~~ 1030 (1127)
+++..||+-|..+|+.+.... .+. ......++.++. +++..||..|...|.. .++ ....++.-
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~p~~~-------~~~~~~i~~~l~-d~d~~Ir~~alelL~~------l~~~~nv~~iv~e 389 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTDHNAV-------QRHRSTIVDCLK-DLDVSIKRRAMELSFA------LVNGNNIRGMMKE 389 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHHHHH-------GGGHHHHHHGGG-SSCHHHHHHHHHHHHH------HCCSSSTHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhCHHHH-------HHHHHHHHHHcc-CCChhHHHHHHHHHHH------HcccccHHHHHHH
Confidence 999999999999999998652 111 123457777774 5778899999999972 333 35667777
Q ss_pred HHHHHHH
Q 035871 1031 LEHILEN 1037 (1127)
Q Consensus 1031 L~~aLe~ 1037 (1127)
|..-+++
T Consensus 390 L~~~l~~ 396 (618)
T 1w63_A 390 LLYFLDS 396 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777665
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=107.88 Aligned_cols=226 Identities=19% Similarity=0.143 Sum_probs=140.0
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhH---HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH-HHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKET---QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII-DKFIH 842 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~---q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv-~~ai~ 842 (1127)
++.+|..|+.+|.+|....= . .+.. ...+|..|+ .+++.+++.|+..|++||++++.-+.-..-..++ ..+++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~-~-~k~~i~~~~GaIp~LV-~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDV-A-NKATLCSMKGCMRALV-AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCH-H-HHHHHHHCHHHHHHHH-HGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCH-H-HHHHHHHcCCcHHHHH-HHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHH
Confidence 46899999999999853210 0 0111 123466554 7788899999999999999996421100001111 24577
Q ss_pred HHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccc-cHHHHHHHHHHHHhhccCCc--hhhhhHHHHHh
Q 035871 843 AVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNA-NSHLMASLTESALNLTKDGD--KIKSNAVRGLG 918 (1127)
Q Consensus 843 aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~i-s~~lL~~L~e~aL~a~~D~D--KVRsnAvRALG 918 (1127)
.|+.. ++..+..|+..|+++|+||+..-..+... .. ....+..|++. ++..++.+ +|+.+|+.+|.
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~---------i~~~~Gai~~Lv~l-L~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKAD---------ICAVDGALAFLVGT-LTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH---------HHHSTTHHHHHHHH-TTCCCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH---------HHHhcCcHHHHHHH-hccCCCcccHHHHHHHHHHHH
Confidence 77775 46677899999999999998621111000 00 11224444432 11111211 59999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhc
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
||...+...+-. .....-..+|+.|++.+.+++.+|+-|||.||+|+-. ++.-. . .=...-+++.|+.++.
T Consensus 244 nLs~~~a~~~~~-----~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~-~i~~~G~i~~Lv~LL~- 315 (354)
T 3nmw_A 244 NVSSLIATNEDH-----RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-E-ALWDMGAVSMLKNLIH- 315 (354)
T ss_dssp HHHHHHTTCHHH-----HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-H-HHHHTTHHHHHHTTTT-
T ss_pred HHHhhccCCHHH-----HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH-H-HHHHCCCHHHHHHHHh-
Confidence 997532211100 0000112468899999999999999999999999973 33211 0 0012236899999995
Q ss_pred CCChHHHHHHHHHhcC
Q 035871 998 SSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 998 ~~NFKVRi~AA~AL~~ 1013 (1127)
+++.+||.+|+.||..
T Consensus 316 s~~~~i~~~A~~aL~n 331 (354)
T 3nmw_A 316 SKHKMIAMGSAAALRN 331 (354)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5889999999999973
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-07 Score=108.92 Aligned_cols=228 Identities=14% Similarity=0.019 Sum_probs=148.0
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHH-----HHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc-ccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQ-----EFIISSLIDSALHDDVASVRSAACRAIGVISCF-PQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q-----~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~-p~L~~ 832 (1127)
|-..|+.+++.+|..|+.+|.++.... .+.+ ...|..| ..+++++++.|+..|+++|+++... +..+.
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~-----~~~~~~i~~~g~i~~L-v~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-----ESAKQQVYQLGGICKL-VDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSC-----SSHHHHHHHTTHHHHH-HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHcCCHHHH-HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 335677888999999999999975211 1111 1234434 4777889999999999999999753 22211
Q ss_pred chHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhh-----cc--
Q 035871 833 SAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNL-----TK-- 904 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a-----~~-- 904 (1127)
...-..+++.|+..+. +++..||..|+|+|+||+.. -.+. ...+. ..+..|++....- ..
T Consensus 81 -~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~---------~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 81 -ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELK---------EELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp -HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTH---------HHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred -HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhH---------HHHHh-ccHHHHHHHHhccccccccCcc
Confidence 1111344788888888 78899999999999999964 1100 01222 4455555432100 01
Q ss_pred ------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH--HHHHHHHHHhhcc------CCccchhhHHHHHHhh
Q 035871 905 ------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL--ERIVQALVSCVTT------GNVKVQWNVCRALSNL 970 (1127)
Q Consensus 905 ------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~--E~~i~aLlk~l~~------~n~KVRWNAc~ALGnl 970 (1127)
....|..+|+.||+||... ++. -.... +.+++.|+..+.+ .+.|+.-||+.+|.|+
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~--~~~--------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSA--DAG--------RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTS--HHH--------HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred chhcccccHHHHHHHHHHHHHHccC--HHH--------HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 1235677999999999743 111 00111 2577788877764 4688999999999887
Q ss_pred hccc----------------------------------------cccc---------cCCCchhHHHHHHHHHHhcCCCh
Q 035871 971 FLNE----------------------------------------TINL---------EDMDWAPSVFSILLLLLRDSSNF 1001 (1127)
Q Consensus 971 ~~n~----------------------------------------~i~~---------~~~~wa~~v~~~Ll~ll~~~~NF 1001 (1127)
-... .++. ...-|...+++.|+.+|.++++-
T Consensus 219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 298 (457)
T 1xm9_A 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH
Confidence 3110 0000 01236678899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 035871 1002 KIRIQAAAALAVP 1014 (1127)
Q Consensus 1002 KVRi~AA~AL~~p 1014 (1127)
+|+..|+.||+..
T Consensus 299 ~~~e~a~~aL~nl 311 (457)
T 1xm9_A 299 ATLEACAGALQNL 311 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999643
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-05 Score=98.49 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=119.6
Q ss_pred HHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc----cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHH
Q 035871 770 VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL----HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVE 845 (1127)
Q Consensus 770 VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~----~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl 845 (1127)
.|.++.++|..+. ..++.+.-..+.. .+...+ .+.++..|-+|+.++|.++-...- +...++..+++. +
T Consensus 423 ~r~~~~~~L~~~~----~~~~~~~l~~~~~-~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-~~~~~l~~l~~~-l 495 (963)
T 2x19_B 423 YRVDISDTLMYVY----EMLGAELLSNLYD-KLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-NYSDVVPGLIGL-I 495 (963)
T ss_dssp HHHHHHHHHHHHH----HHHTHHHHHHHHH-HHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-SCCSHHHHHHHH-G
T ss_pred HHHHHHHHHHHHH----HHccHHHHHHHHH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHH-H
Confidence 4777777776543 1222222222332 222333 567889999999999999733222 223456666663 3
Q ss_pred HhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccc
Q 035871 846 INTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 846 ~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~ 925 (1127)
..+.+++..||..+.|+||.+++-+..+. +.+..+++..+...+| ++|+..|+.|+.++.+-..
T Consensus 496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~---------------~~l~~vl~~l~~~l~~-~~V~~~A~~al~~l~~~~~ 559 (963)
T 2x19_B 496 PRISISNVQLADTVMFTIGALSEWLADHP---------------VMINSVLPLVLHALGN-PELSVSSVSTLKKICRECK 559 (963)
T ss_dssp GGSCCCSHHHHHHHHHHHHHTHHHHHHCH---------------HHHTTTHHHHHHHTTC-GGGHHHHHHHHHHHHHHTG
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhCH---------------HHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHH
Confidence 35566788899999999999998765321 2333444444444555 7899999999999986543
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHhhccC--CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHH
Q 035871 926 YTSSSHPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 926 ~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
.. +. ...+.+++.|.+.+..+ +.++|-.+..|+|.+...-. .....+....+.+.|...+
T Consensus 560 ~~-l~--------p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l 621 (963)
T 2x19_B 560 YD-LP--------PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQL 621 (963)
T ss_dssp GG-CT--------TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HH-HH--------hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 22 21 13678888888888753 46789899999999875421 1111233444554444444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=107.94 Aligned_cols=186 Identities=11% Similarity=0.122 Sum_probs=118.8
Q ss_pred CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC--------HhHHHHHHHHHhhhhcccccccchHHH
Q 035871 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV--------ASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 766 ~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~--------~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
+++.+|..|+-+||-|+..... + ++. +|...+.+.+ +.||..|+.+||.+.+ +...
T Consensus 407 ~~~~ik~GAllaLGli~ag~~~----~----~~~-lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~----GS~~--- 470 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFGR----D----TTD-YLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM----GSAN--- 470 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTH----H----HHH-HHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST----TCCC---
T ss_pred CcHHHHHHHHHHHHHhcCCCcH----H----HHH-HHHHHHcCccccccccccHHHHHHHHHHHHHHhc----CCCC---
Confidence 4689999999999998776531 1 222 2223334333 7899999999998632 2211
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhh--hhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANI--CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVR 915 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL--~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvR 915 (1127)
+++++.|...+.|++..+|.-|++|||-+ |.. +.+.+..|++.+. ..++|+||..|+-
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------------------n~~ai~~LL~~~~--e~~~e~vrR~aal 530 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------------------KPEAIHDMFTYSQ--ETQHGNITRGLAV 530 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------------------CHHHHHHHHHHHH--HCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------------------CHHHHHHHHHHHh--ccCcHHHHHHHHH
Confidence 46778888888888888999999999976 211 1234556666554 3567799999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc-cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT-TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~-~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
+||.+. .|++. .++.|++.+. +.++-||+-|++|+|-.+-.. ....+++.|+..
T Consensus 531 gLGll~-------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAyaGT--------Gn~~aIq~LL~~ 585 (963)
T 4ady_A 531 GLALIN-------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALAYAGT--------GNNSAVKRLLHV 585 (963)
T ss_dssp HHHHHT-------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS--------CCHHHHHHHHHH
T ss_pred HHHhhh-------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHH
Confidence 999773 12222 2333444432 456677777777766443211 124566666666
Q ss_pred HhcCCChHHHHHHHHHhc
Q 035871 995 LRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~ 1012 (1127)
+.++.+-.||..|+.|||
T Consensus 586 ~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHCSCHHHHHHHHHHHH
T ss_pred hccCCcHHHHHHHHHHHH
Confidence 666666667777777766
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=105.48 Aligned_cols=150 Identities=19% Similarity=0.109 Sum_probs=99.6
Q ss_pred hh-hccCCCHhHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCC
Q 035871 803 DS-ALHDDVASVRSAACRAIGVISCF-PQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAF 879 (1127)
Q Consensus 803 l~-~~~De~~~VRaAA~RALGvlv~~-p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~ 879 (1127)
.. ++++.++.||..|+++||+++.- |..++ ...-..+++.|+..+. |++..||.+|+|||+||+..-......
T Consensus 87 v~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~-~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~--- 162 (296)
T 1xqr_A 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE-QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ--- 162 (296)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH-HHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH---
Confidence 35 77899999999999999999731 11111 1111246788888776 668999999999999998421110000
Q ss_pred CCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 880 KPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 880 ~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
.+....+..|++. + ..++.+||..|+.||+||... ..+. .....-..+++.|++.+.+++.+|
T Consensus 163 ------~~~~ggi~~L~~l-L--~~~d~~v~~~A~~aLs~L~~~-~~~~-------~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 163 ------FLRLDGFSVLMRA-M--QQQVQKLKVKSAFLLQNLLVG-HPEH-------KGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp ------HHHTTHHHHHHHH-H--HSSCHHHHHHHHHHHHHHHHH-CGGG-------HHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred ------HHHCCCHHHHHHH-H--cCCCHHHHHHHHHHHHHHHhC-ChHH-------HHHHHHcCCHHHHHHHHcCCChhH
Confidence 0001123333332 1 134558999999999999743 1110 001123457889999999999999
Q ss_pred hhhHHHHHHhhhcc
Q 035871 960 QWNVCRALSNLFLN 973 (1127)
Q Consensus 960 RWNAc~ALGnl~~n 973 (1127)
|=.|+.||||+...
T Consensus 226 ~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 226 HEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999865
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-05 Score=98.41 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=92.1
Q ss_pred CCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC--CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccc
Q 035871 809 DVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH--DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSN 886 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~--D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~ 886 (1127)
.++..|-||+.++|.+.--..-. ...++...++ ++..+. |+++.||..|.|+||.+++-+..+. .
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~-~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-----------~ 542 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGE-EKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-----------A 542 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------------
T ss_pred CcHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-----------H
Confidence 67889999999999986322211 1234556666 444444 7799999999999999998765321 1
Q ss_pred ccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC--CccchhhHH
Q 035871 887 ANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVC 964 (1127)
Q Consensus 887 is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc 964 (1127)
.-+.++..|++ .. | .+|+..|+.|+.+|.+-+... + ....+.+++.|.+.+..+ +.+++-.+.
T Consensus 543 ~l~~vl~~l~~----~l-~-~~v~~~A~~al~~l~~~~~~~-l--------~p~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 543 YIPPAINLLVR----GL-N-SSMSAQATLGLKELCRDCQLQ-L--------KPYADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp CHHHHHHHHHH----HH-H-SSCHHHHHHHHHHHHHHCHHH-H--------HHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHH----Hh-C-hHHHHHHHHHHHHHHHHHHHh-c--------cccHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 22233444443 34 3 789999999999998544321 1 124677888888888764 468999999
Q ss_pred HHHHhhhcc
Q 035871 965 RALSNLFLN 973 (1127)
Q Consensus 965 ~ALGnl~~n 973 (1127)
.|+|.+...
T Consensus 608 ~ai~~i~~~ 616 (971)
T 2x1g_F 608 FSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999864
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-07 Score=108.44 Aligned_cols=227 Identities=19% Similarity=0.142 Sum_probs=145.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcc--cccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCF--PQVS 831 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~--p~L~ 831 (1127)
|...|+..++.++..|+.+|.++.... .+.+. ..|..|+ .+++..++.|+..|++||++++.. +.-+
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-----~~~k~~V~~~G~Ip~LV-~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-----DKVKTDVRKLKGIPVLV-GLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHH-HGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHcCCcHHHH-HHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 445677888999999999998874311 12222 2445444 778889999999999999999752 1111
Q ss_pred cchHHHHHHHHHHHHhcCC-CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh---------
Q 035871 832 QSAEIIDKFIHAVEINTHD-PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN--------- 901 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D-~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~--------- 901 (1127)
....-..+++.|+..+.. .+..|+..|+|+|.||+..= .+. ..+-...+..|++-.+.
T Consensus 127 -~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k----------~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 127 -IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIK----------MEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp -HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGH----------HHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred -HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhh----------HHHHhccHHHHHHHHhcccccccccc
Confidence 111123457888888875 57789999999999998620 000 01112233444432210
Q ss_pred -----h-ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhH--HHHHHHHHHHhhcc------CCccchhhHHHHH
Q 035871 902 -----L-TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRW--LERIVQALVSCVTT------GNVKVQWNVCRAL 967 (1127)
Q Consensus 902 -----a-~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~--~E~~i~aLlk~l~~------~n~KVRWNAc~AL 967 (1127)
. ..+.++|+.||+.+|.||...-.. ..... .+.+|+.|+..++. .+-|..=||+.+|
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~---------~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL 265 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSE---------ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHH---------HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHH---------HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence 0 012348999999999999621000 00001 12356677776653 5678999999999
Q ss_pred Hhhhccc--ccc--------------------cc--CCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 968 SNLFLNE--TIN--------------------LE--DMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 968 Gnl~~n~--~i~--------------------~~--~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.|+-..- .++ .. +.-|...+++.|+.++.++.+..|+.+|+.||.
T Consensus 266 ~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334 (584)
T ss_dssp HHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 9975431 110 00 112667889999999999999999999999995
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-07 Score=102.69 Aligned_cols=192 Identities=17% Similarity=0.127 Sum_probs=123.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhc-cccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQ 832 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~ 832 (1127)
|-.+|..+++.+|..|+.+|.++.... ..+.+.. .|..|+--+.+..++.++..|+++|++++. .+..+
T Consensus 132 LV~LL~s~~~~v~~~A~~aL~nLs~~~----~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk- 206 (354)
T 3nmw_A 132 LVAQLKSESEDLQQVIASVLRNLSWRA----DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK- 206 (354)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTC----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhccC----CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh-
Confidence 445667788999999999999984310 0122222 344454323566788999999999999975 22221
Q ss_pred chHHH--HHHHHHHHHhcCCCCc----chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-C
Q 035871 833 SAEII--DKFIHAVEINTHDPLV----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-D 905 (1127)
Q Consensus 833 d~~fv--~~ai~aLl~~l~D~~~----~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D 905 (1127)
..++ ..+++.|...+.+++. .|+..|+|+|.||+..+..+.+. ....+....+..|++ ..+ .
T Consensus 207 -~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~------~~~i~~~g~i~~Lv~----lL~~~ 275 (354)
T 3nmw_A 207 -ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH------RQILRENNCLQTLLQ----HLKSH 275 (354)
T ss_dssp -HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHTTTHHHHHHH----HTTCS
T ss_pred -HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH------HHHHHHcCCHHHHHH----HHcCC
Confidence 1222 4577888888876654 49999999999999632111100 000011122444443 234 4
Q ss_pred CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 906 GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 906 ~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
+++|+.+|+.||+||...-+ +. .....-..+|+.|++.+++++.++|=+||.||.|+..+.
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~-~~-------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNP-KD-------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCH-HH-------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHhCCCH-HH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 45899999999999952100 00 001122456899999999999999999999999999774
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-07 Score=105.94 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=123.7
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISC-FPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~ 831 (1127)
.|..+|..+++.++..||.||++|.... ..+.+.. .|..|+--+.+..++.|+..|+++|++++. .+..+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~----~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRA----DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSC----CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCC----CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 3445667788999999999999985310 0122222 344454323566788999999999999975 22221
Q ss_pred cchHHH--HHHHHHHHHhcCCCCc----chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-
Q 035871 832 QSAEII--DKFIHAVEINTHDPLV----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK- 904 (1127)
Q Consensus 832 ~d~~fv--~~ai~aLl~~l~D~~~----~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~- 904 (1127)
..++ ..+++.|...+.+++. .|+..|+|+|.||+..+..+.+. . ...+....+..|++ +.+
T Consensus 323 --~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~---~---~~i~~~G~i~~Lv~----LL~~ 390 (458)
T 3nmz_A 323 --ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH---R---QILRENNCLQTLLQ----HLKS 390 (458)
T ss_dssp --HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH---H---HHHHHTTHHHHHHH----HSSC
T ss_pred --HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH---H---HHHHHcccHHHHHH----HHcC
Confidence 1222 3567888888876655 39999999999999632211100 0 00011112333433 344
Q ss_pred CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc
Q 035871 905 DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE 974 (1127)
Q Consensus 905 D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~ 974 (1127)
.+++|+.+|++||+||...- .+. .....-..+|+.|++.+..++.++|=+||.||.|+..+.
T Consensus 391 ~~~~v~~~A~~aL~nLa~~~-~~~-------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 391 HSLTIVSNACGTLWNLSARN-PKD-------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SCHHHHHHHHHHHHHHHSSC-HHH-------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHHcCC-HHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 44589999999999996210 000 001123567889999999999999999999999999764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=102.05 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-----cCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-----HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 766 ~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-----~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.+...|.+||-|+|.|....-....+.....++..+ +.++ +|..+.||+.+++++|.|.-| +..+..|+..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l-~~l~~~~~~~~~~~~v~~~~~~~lgry~~~--~~~~~~~l~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL-LDLTVKKRGKDNKAVVASDIMYVVGQYPRF--LKAHWNFLRTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH-HHHTTSSCSHHHHHHHHHHHHHHHHHCHHH--HHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH-HHHHhhhccccchHHHHHHHHHHHHHHHHH--HHhHHHHHHHH
Confidence 345779999999999854321110011123344433 2433 256788888899999988632 23356789999
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGN 919 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGn 919 (1127)
++.++..++|++..||..|+|||.++|......... ..+...+..-++++..+.+. ..+ .++-......|+|.
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~--~~~~~~~p~~~~il~~l~~~----~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI--QQPRESEPFIQTIIRDIQKT----TADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHS--CCTTCSSCHHHHHHHTHHHH----HTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCcHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875432110 01000001223444444332 222 22345678899999
Q ss_pred hhhccc
Q 035871 920 LSRFVK 925 (1127)
Q Consensus 920 Ll~~l~ 925 (1127)
+....+
T Consensus 616 ii~~~~ 621 (1049)
T 3m1i_C 616 IISEER 621 (1049)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 975544
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-05 Score=95.71 Aligned_cols=241 Identities=16% Similarity=0.125 Sum_probs=148.3
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccC-CCHhHHHHHHHHHhhhhcccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHD-DVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~D-e~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
.|..+|..+++.++..|+.||.+|.... ..+.+.. .|..|+ .++.. .+..++..|+.+|.++...+..+
T Consensus 94 ~LV~LL~s~~~~vq~~Aa~AL~nLa~~~----~~~nk~~I~~~GaIp~LV-~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 94 VLVGLLDHPKKEVHLGACGALKNISFGR----DQDNKIAIKNCDGVPALV-RLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHTSSS----CHHHHHHHHHTTHHHHHH-HHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHccC----CHHHHHHHHHcCCHHHHH-HHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 4456677889999999999999986410 0223333 344344 55564 67889999999999998755543
Q ss_pred cchHHHHHHHHHHHHhc------------------CCCCcchhchHHHHHHhhhhhh---hhcccccCCCCCCcccccHH
Q 035871 832 QSAEIIDKFIHAVEINT------------------HDPLVSVRITASWALANICDSI---RHCIDDFAFKPSIDSNANSH 890 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l------------------~D~~~~VRikAAWALGNL~d~L---~~~~~~~~~~~~~~~~is~~ 890 (1127)
. .+++.+++.|...+ +-++..|+.+|+|+|.||+..= ...+-+ ...+.+
T Consensus 169 ~--~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-------~~Gli~- 238 (584)
T 3l6x_A 169 M--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-------CDGLVD- 238 (584)
T ss_dssp H--HHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-------STTHHH-
T ss_pred H--HHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-------cCCcHH-
Confidence 3 23455677776643 1225699999999999998521 110000 001111
Q ss_pred HHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCC-----CCC--------C-C--CCCC-hhHHHHHHHHHHHhhc
Q 035871 891 LMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS-----SSH--------P-A--SLGD-SRWLERIVQALVSCVT 953 (1127)
Q Consensus 891 lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~-----~~~--------~-~--~~g~-~~~~E~~i~aLlk~l~ 953 (1127)
.|..+++..+...+.++++..||+.+|.||..-...+. +.. + + ..|- ..|--.+|..|++.++
T Consensus 239 ~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~ 318 (584)
T 3l6x_A 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318 (584)
T ss_dssp HHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence 13333443332334566899999999999875542110 000 0 0 0111 1123467888999996
Q ss_pred c-CCccchhhHHHHHHhhhccccccccC---CCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCC
Q 035871 954 T-GNVKVQWNVCRALSNLFLNETINLED---MDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 954 ~-~n~KVRWNAc~ALGnl~~n~~i~~~~---~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p 1014 (1127)
. .+..|+=||+.||.|+.....-.... .--....++.|..+|. +.+-+|+..|+.||+..
T Consensus 319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~-s~~~~v~~~A~~aL~nL 382 (584)
T 3l6x_A 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT-NEHERVVKAASGALRNL 382 (584)
T ss_dssp HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 4 67999999999999996542100000 0001346899999995 57789999999999743
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.4e-06 Score=100.69 Aligned_cols=196 Identities=18% Similarity=0.133 Sum_probs=125.2
Q ss_pred HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcc---hhchHHHHHHhhhhhhhhc
Q 035871 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVS---VRITASWALANICDSIRHC 873 (1127)
Q Consensus 797 ~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~---VRikAAWALGNL~d~L~~~ 873 (1127)
+++.| ..+++.+++.+|..|+|+|++++..+.-+.- ..-+-+++.|+..+.+.... +|..|++||+||+-.- +
T Consensus 458 vIp~L-v~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~--n 533 (778)
T 3opb_A 458 LISFL-KREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT--N 533 (778)
T ss_dssp HHHHH-HHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH-HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS--C
T ss_pred CHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC--C
Confidence 34433 3667789999999999999999866554431 11235578888887766554 8999999999998421 1
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHHHhhccCCc---------------hhhhhHHHHHhhhhhcccc--CCCCCCCCCC
Q 035871 874 IDDFAFKPSIDSNANSHLMASLTESALNLTKDGD---------------KIKSNAVRGLGNLSRFVKY--TSSSHPASLG 936 (1127)
Q Consensus 874 ~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D---------------KVRsnAvRALGnLl~~l~~--~~~~~~~~~g 936 (1127)
.. ..|..+ +.. ..+..|++ +...++ .-+.+|.+||+||...-+. +.. .
T Consensus 534 p~-~~f~~~--~~~--~aI~pLv~----LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~------r 598 (778)
T 3opb_A 534 PG-LIFKKY--SAL--NAIPFLFE----LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV------C 598 (778)
T ss_dssp HH-HHSSSS--CST--THHHHHHH----TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH------H
T ss_pred HH-HHcCCC--ccc--cchHHHHH----HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH------H
Confidence 10 011110 011 23444443 223111 1278999999999733211 000 0
Q ss_pred ChhHH-HHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc---ccCCCchhH---HHHHHHHHHhcCCChHHHHHHHH
Q 035871 937 DSRWL-ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN---LEDMDWAPS---VFSILLLLLRDSSNFKIRIQAAA 1009 (1127)
Q Consensus 937 ~~~~~-E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~---~~~~~wa~~---v~~~Ll~ll~~~~NFKVRi~AA~ 1009 (1127)
...+. +.+++.|...+.+++.-||-.||.++.|+..++.-. ..... .+. =++.|..++ +..++++|..|+.
T Consensus 599 ~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~-~~~~~~rL~lLV~Ll-~s~D~~~r~AAag 676 (778)
T 3opb_A 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE-NPQSLRNFNILVKLL-QLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS-SHHHHHHHHHHHHGG-GCSCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc-CchhhccHHHHHHHH-cCCCHHHHHHHHH
Confidence 01122 268889999999999999999999999999887521 11111 122 377888888 6799999999999
Q ss_pred HhcC
Q 035871 1010 ALAV 1013 (1127)
Q Consensus 1010 AL~~ 1013 (1127)
||+.
T Consensus 677 ALAn 680 (778)
T 3opb_A 677 IFAN 680 (778)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0009 Score=81.29 Aligned_cols=381 Identities=15% Similarity=0.125 Sum_probs=222.3
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcC
Q 035871 496 HNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTS 575 (1127)
Q Consensus 496 Hr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~ 575 (1127)
-.++..-|++ .++-+..-+|++++.+.. +++++.++..++..+...+. +.+ +|..|.-|+..++...
T Consensus 113 iN~l~kDl~~-~n~~ir~lALr~L~~i~~--------~e~~~~l~~~v~~~l~~~d~---~~~-VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 113 NNAIKNDLAS-RNPTFMGLALHCIANVGS--------REMAEAFAGEIPKILVAGDT---MDS-VKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHCC--------HHHHHHHTTHHHHHHHCSSS---CHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHhhccCC--------HHHHHHHHHHHHHHHhCCCC---CHH-HHHHHHHHHHHHHHhC
Confidence 3456667776 456678889999998843 34666666666666632222 334 6667776776666533
Q ss_pred CChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhh
Q 035871 576 PAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAA 655 (1127)
Q Consensus 576 ~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~ 655 (1127)
|.. .+ ...|+..+.+.. .+.++.|..-|+.++..++.+.|....++...+...+.+++...
T Consensus 180 p~~-----------------~~-~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~ 240 (621)
T 2vgl_A 180 PDL-----------------VP-MGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSA 240 (621)
T ss_dssp GGG-----------------CC-CCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCC
T ss_pred hhh-----------------cC-chhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCC
Confidence 211 01 123455554444 24556889999999999998888755555555556666665321
Q ss_pred CCCCcccccCCCCCCCccccc---hhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCccccc
Q 035871 656 SPEVPAKAWKGHVGNTAGFIG---EKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQE 732 (1127)
Q Consensus 656 ~~~~~~~~~~g~~~~~~~l~g---~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~ 732 (1127)
+.+ .++-.++| +=.+ +++|+- ++.+ .-.+ +|
T Consensus 241 --~~~--------~~~~~~~~~~~~w~q---i~il~l-l~~~---~~~~------------------------d~----- 274 (621)
T 2vgl_A 241 --STD--------LQDYTYYFVPAPWLS---VKLLRL-LQCY---PPPE------------------------DP----- 274 (621)
T ss_dssp --SSS--------CSTTEETTEESHHHH---HHHHHH-GGGS---SSCS------------------------SH-----
T ss_pred --CCC--------ccchhhcCCCCchHH---HHHHHH-HHHh---CCCC------------------------CH-----
Confidence 010 00111111 1111 334431 1110 0000 00
Q ss_pred chhhhhhhhhhhhcchhhhHHHHHhhHHH--------HHccCCh--hHHHHHHHHHhccchhHHhhcchhHHHHHHHHHH
Q 035871 733 SSEDIKESAKAFQSGSEQWSEMIEKHMPL--------ILQHISS--MVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI 802 (1127)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~W~~iie~~Lp~--------~l~d~~~--~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Ll 802 (1127)
+ . ...-.++++.++.. .+++.++ .|.-.|+.++-.+++. .+....++..|
T Consensus 275 ---~---------~-~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~------~~~~~~~~~~L- 334 (621)
T 2vgl_A 275 ---A---------V-RGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE------PNLLVRACNQL- 334 (621)
T ss_dssp ---H---------H-HHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHH-
T ss_pred ---H---------H-HHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc------HHHHHHHHHHH-
Confidence 0 0 01112334444433 2334443 7777788888777632 22334455543
Q ss_pred hhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 803 l~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
...+.+.++.+|..|.++|..++.-. .+..++......++..+. |++..||.+|--.|..+++.- |.
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~---~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv------- 402 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSE---FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS--NA------- 402 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCT---TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HH-------
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh--hH-------
Confidence 35567889999999999999997311 123455666677777788 999999999999999988651 11
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchh
Q 035871 882 SIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRW 961 (1127)
..++..|.+.+. +.++..|..+++++|.++.-... + .+..++.|++.++.+.-.|.-
T Consensus 403 -------~~Iv~eL~~yl~---~~d~~~~~~~v~~I~~la~k~~~----------~---~~~~v~~Ll~ll~~~~~~v~~ 459 (621)
T 2vgl_A 403 -------QQIVAEMLSYLE---TADYSIREEIVLKVAILAEKYAV----------D---YTWYVDTILNLIRIAGDYVSE 459 (621)
T ss_dssp -------HHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCS----------S---THHHHHHHHHHHHHHGGGSCS
T ss_pred -------HHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCC----------c---HHHHHHHHHHHHHhhcccchH
Confidence 233444544432 23447999999999999743322 1 366888888888764444666
Q ss_pred hHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHH--HHHHHHhcCCCcccccCC
Q 035871 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIR--IQAAAALAVPSSVSDYGK 1022 (1127)
Q Consensus 962 NAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVR--i~AA~AL~~p~~R~~yG~ 1022 (1127)
-+...+-.+..+. +.-...++..|+..+.++ ..+.. .-|++-|| .||.
T Consensus 460 ev~~~l~~ii~~~------~~~~~~~~~~l~~~l~~~-~~~~~li~~~~wilG------Ey~~ 509 (621)
T 2vgl_A 460 EVWYRVIQIVINR------DDVQGYAAKTVFEALQAP-ACHENLVKVGGYILG------EFGN 509 (621)
T ss_dssp HHHHHHHHHHGGG------CSCHHHHHHHHHHHHTSS-SCCHHHHHHHHHHHH------HHTH
T ss_pred HHHHHHHHHHhCC------hhHHHHHHHHHHHHHcCc-cchHHHHHHHHHHhc------chHH
Confidence 6677777766442 122355778899999754 44433 35668888 5764
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.13 E-value=0.01 Score=74.55 Aligned_cols=195 Identities=9% Similarity=0.113 Sum_probs=128.3
Q ss_pred HHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhc----CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc
Q 035871 813 VRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINT----HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN 888 (1127)
Q Consensus 813 VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l----~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is 888 (1127)
.|.++...|..+. ..+.. ..+..+.+.+...+ .+++...|-.|.|++|.+++.+.... .
T Consensus 423 ~r~~~~~~L~~~~--~~~~~--~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-------------~ 485 (963)
T 2x19_B 423 YRVDISDTLMYVY--EMLGA--ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-------------S 485 (963)
T ss_dssp HHHHHHHHHHHHH--HHHTH--HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-------------C
T ss_pred HHHHHHHHHHHHH--HHccH--HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-------------h
Confidence 3566665554442 11111 12233334444444 66788899999999999997643210 0
Q ss_pred HHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 889 SHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 889 ~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
..+..+++.......++.+||..++.++|.+.+++... +...+.+++.|+..+.+ .+||-.||+|+.
T Consensus 486 -~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~----------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~ 552 (963)
T 2x19_B 486 -DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH----------PVMINSVLPLVLHALGN--PELSVSSVSTLK 552 (963)
T ss_dssp -SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC----------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHhCC--chHHHHHHHHHH
Confidence 13455666555566678899999999999998877642 23567788889888855 899999999999
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHhcC-CChHHHHHHHHHhcCCCcc---cccCCchHHHHHHHHHHHHHhc
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLRDS-SNFKIRIQAAAALAVPSSV---SDYGKSFSDVVQGLEHILENLG 1039 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~-~NFKVRi~AA~AL~~p~~R---~~yG~~~~~V~~~L~~aLe~~~ 1039 (1127)
++...- ...=.+..+.+++.|..++... -..++|..+-.|++..... .....++..+..-+...|+.+.
T Consensus 553 ~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 625 (963)
T 2x19_B 553 KICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLA 625 (963)
T ss_dssp HHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998531 1112367888999999988642 2568998887777643322 2233356667777778887763
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-06 Score=91.51 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=30.6
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHh
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIG 822 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALG 822 (1127)
+-.++.|++++||..|+..|. .. ++..+.+|+++.||.+|+.+|+
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~---~~----------------~l~~L~~D~~~~VR~~aA~~L~ 99 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP---VE----------------ALTPLIRDSDEVVRRAVAYRLP 99 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC---GG----------------GGGGGTTCSSHHHHHHHHTTSC
T ss_pred HHHHhcCCCHHHHHHHHHhCC---HH----------------HHHHHccCcCHHHHHHHHHHCC
Confidence 334567888999999888542 11 2345667888888888887654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0011 Score=83.71 Aligned_cols=245 Identities=11% Similarity=0.108 Sum_probs=136.1
Q ss_pred CChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 035871 766 ISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAV 844 (1127)
Q Consensus 766 ~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aL 844 (1127)
.+...|.+|+-||+.|+...-... ...-..++. ++..+. +|.++.||.+|+++||.|.-+ +..+..|+..+++.|
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~--l~~~~~~l~~vl~~l 551 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNW--LMENPAYIPPAINLL 551 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHH--HC----CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHH
Confidence 456789999999999976542211 111123444 343444 367999999999999999732 223456788899999
Q ss_pred HHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhcc
Q 035871 845 EINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFV 924 (1127)
Q Consensus 845 l~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l 924 (1127)
+..+ | ..|+..|+|||.++|+....... ..-+.++..+.+. +....-+.+++..+..|+|.+...+
T Consensus 552 ~~~l-~--~~v~~~A~~al~~l~~~~~~~l~----------p~~~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 552 VRGL-N--SSMSAQATLGLKELCRDCQLQLK----------PYADPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHH-H--SSCHHHHHHHHHHHHHHCHHHHH----------HHHHHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHh-C--hHHHHHHHHHHHHHHHHHHHhcc----------ccHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhC
Confidence 9888 5 78999999999999986543221 1112334444332 2111123489999999999998654
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHhhc----cC--CccchhhHHHHHHhh---hcc--cccc---------ccCCCch
Q 035871 925 KYTSSSHPASLGDSRWLERIVQALVSCVT----TG--NVKVQWNVCRALSNL---FLN--ETIN---------LEDMDWA 984 (1127)
Q Consensus 925 ~~~~~~~~~~~g~~~~~E~~i~aLlk~l~----~~--n~KVRWNAc~ALGnl---~~n--~~i~---------~~~~~wa 984 (1127)
+.+. .....+.+++.+++.+. .. +..-+-.+..+|+.+ ++. +.+. ..-.+..
T Consensus 618 ~~~~--------~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 689 (971)
T 2x1g_F 618 RPEE--------IPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM 689 (971)
T ss_dssp CTTH--------HHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred CHHH--------HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH
Confidence 4211 11234454444444332 22 111223334444433 321 0000 0001234
Q ss_pred hHHHHHHHHHHhcC-CChHHHHHHHHHhcCCC--cccccCCchHHHHHHHHHHHH
Q 035871 985 PSVFSILLLLLRDS-SNFKIRIQAAAALAVPS--SVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 985 ~~v~~~Ll~ll~~~-~NFKVRi~AA~AL~~p~--~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
..+++.+..++.+. .+..|.-.|..+++... -..+++.+.+.++..++..++
T Consensus 690 ~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~ 744 (971)
T 2x1g_F 690 QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQ 744 (971)
T ss_dssp HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHh
Confidence 56778888887654 35688888888876311 112345556666666654443
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=86.79 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=141.3
Q ss_pred HHHccCChhHHHHHHHHHhc-cchhHHhhcc--hhHHHHHHHHHHhhhc-cCCCHhHHHHHHHHHhhhhcccccc-cc-h
Q 035871 761 LILQHISSMVRTAAVTCFAG-ITSSVFFSLL--KETQEFIISSLIDSAL-HDDVASVRSAACRAIGVISCFPQVS-QS-A 834 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~-Igs~~f~~Lp--~~~q~~~i~~Lll~~~-~De~~~VRaAA~RALGvlv~~p~L~-~d-~ 834 (1127)
..++..+..-|.+|.++|+. +.... ..+. ...-..++..|. ..+ +|.|+.||.+|+++||.++ ..++ .. .
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~-~~l~~D~n~~v~~~A~~al~~la--~~l~~~~f~ 98 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYG-HIIQKDANIQAVALAAQSVELIC--DKLKTPGFS 98 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHH--HHHCTTTSC
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHH--Hhccccccc
Confidence 34577788899999999999 75332 1222 222123344443 555 8999999999999999997 2333 22 2
Q ss_pred -HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhh
Q 035871 835 -EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSN 912 (1127)
Q Consensus 835 -~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsn 912 (1127)
.|...+++.++..+.|+...||-.|.-||-+++..+-... .....+.++..|++. .+ .+..||..
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~---------~~~~l~~ll~~l~~~----l~~k~~~vk~~ 165 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA---------SSGRNEDMLKDILEH----MKHKTPQIRME 165 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC---------TTCTTHHHHHHHHHH----TTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc---------cCCcHHHHHHHHHHH----HcCCChHHHHH
Confidence 5788899999999999999999999999999988642100 000123455555543 33 35689999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHH-HHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWL-ERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSIL 991 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~-E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~L 991 (1127)
+...|+.++......+ . .-.... ..+++.|.+++.+.+..||=-|.-+||.+.+- + + ...+...
T Consensus 166 al~~l~~~~~~~~~~~----~--~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~--v--G-----~~~~~p~ 230 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGY----S--TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI--F--G-----MNTFVKT 230 (249)
T ss_dssp HHHHHHHHHHHCCSCS----H--HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--H--C-----SGGGHHH
T ss_pred HHHHHHHHHHHcCCcc----h--hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--h--C-----HHHHHHH
Confidence 9999999975433210 0 001235 67899999999999999999999999986531 0 0 1134455
Q ss_pred HHHHhcCCChHHH
Q 035871 992 LLLLRDSSNFKIR 1004 (1127)
Q Consensus 992 l~ll~~~~NFKVR 1004 (1127)
+.-|-+.++=|||
T Consensus 231 l~~Ld~~k~~ki~ 243 (249)
T 2qk1_A 231 LEHLDNLKRKKIE 243 (249)
T ss_dssp HHHSCHHHHHHHH
T ss_pred HHHHhHHHHHHHH
Confidence 5555444444444
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=84.93 Aligned_cols=192 Identities=11% Similarity=0.150 Sum_probs=137.3
Q ss_pred ccCCCHhHHHHHHHHHhh-hh-ccccccc-chHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhh-hcccccCCC
Q 035871 806 LHDDVASVRSAACRAIGV-IS-CFPQVSQ-SAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIR-HCIDDFAFK 880 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGv-lv-~~p~L~~-d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~-~~~~~~~~~ 880 (1127)
+.+.++.-|-+|..+|+. ++ -.|.+.. +..| ..+++.|...+ .|++..||..|+-+||.|+..+. ..
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~------- 96 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG------- 96 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-------
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-------
Confidence 478899999999999999 75 4455542 2222 46688888888 79999999999999999998774 32
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
+.......++-..+...+|+. .||..|..||-.+...+.+... . + ..+.+++.|+..+++++.+|
T Consensus 97 ------f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~----~---~l~~ll~~l~~~l~~k~~~v 162 (249)
T 2qk1_A 97 ------FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-S----G---RNEDMLKDILEHMKHKTPQI 162 (249)
T ss_dssp ------SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-T----C---TTHHHHHHHHHHTTCSSHHH
T ss_pred ------ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-C----C---cHHHHHHHHHHHHcCCChHH
Confidence 221123334444555677765 5999999999888766543110 0 0 14678889999999999999
Q ss_pred hhhHHHHHHhhhcccccc-ccCCCch-hHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC
Q 035871 960 QWNVCRALSNLFLNETIN-LEDMDWA-PSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK 1022 (1127)
Q Consensus 960 RWNAc~ALGnl~~n~~i~-~~~~~wa-~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~ 1022 (1127)
|-.++..|+.+..+..-. ..-.+.. +.+++.|+.++ ++.+-.||..|..+|+... ...|+
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~--~~vG~ 224 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILI--KIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHH--HHHCS
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH--HHhCH
Confidence 999999999998653210 0001234 67999999999 5688999999999998432 24555
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00047 Score=85.38 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=140.6
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHh---HHHHHHHHHhhhhcc--
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVAS---VRSAACRAIGVISCF-- 827 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~---VRaAA~RALGvlv~~-- 827 (1127)
.|...+..+++.+|..|+.+|.+|... .+.|.. .+..|+ ..+.+.... +|..|++||..+...
T Consensus 461 ~Lv~Ll~S~s~~~re~A~~aL~nLS~d------~~~R~~lvqqGal~~LL-~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 461 FLKREMHNLSPNCKQQVVRIIYNITRS------KNFIPQLAQQGAVKIIL-EYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHHTS------GGGHHHHHHTTHHHHHH-HHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHH-HHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 344666788899999999999998533 233333 333343 555554333 899999999998521
Q ss_pred ccc---ccchHHHHHHHHHHHHhcC-CCCcc-------------hhchHHHHHHhhhhhhhhcccccCCCCCCccccc-H
Q 035871 828 PQV---SQSAEIIDKFIHAVEINTH-DPLVS-------------VRITASWALANICDSIRHCIDDFAFKPSIDSNAN-S 889 (1127)
Q Consensus 828 p~L---~~d~~fv~~ai~aLl~~l~-D~~~~-------------VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is-~ 889 (1127)
|.+ +.+. ..+++.|...+. ++... -+..|+.||.||+..=....++. ....+. .
T Consensus 534 p~~~f~~~~~---~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~-----r~~Ii~~~ 605 (778)
T 3opb_A 534 PGLIFKKYSA---LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV-----CKHIVSTK 605 (778)
T ss_dssp HHHHSSSSCS---TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH-----HHHHHHSH
T ss_pred HHHHcCCCcc---ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH-----HHHHHHhc
Confidence 111 1111 268889998887 23321 16789999999996310000000 000111 1
Q ss_pred HHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHh
Q 035871 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSN 969 (1127)
Q Consensus 890 ~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGn 969 (1127)
..+..|.+. + ..+++.||..|+.++.||...-. ......+........+-++.|++.+..++.++|-.|+.||+|
T Consensus 606 ga~~~L~~L-L--~s~n~~VrrAA~elI~NL~~~~e--~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn 680 (778)
T 3opb_A 606 VYWSTIENL-M--LDENVPLQRSTLELISNMMSHPL--TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHHHHG-G--GCSSHHHHHHHHHHHHHHHTSGG--GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-H--hCCCHHHHHHHHHHHHHHhCCcH--HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 233333332 1 35777899999999999974211 100001111111122348889999999999999999999999
Q ss_pred hh-ccccccccCCCchhHHHHHHHHHHhcC-CChHHHHHHHHHhc
Q 035871 970 LF-LNETINLEDMDWAPSVFSILLLLLRDS-SNFKIRIQAAAALA 1012 (1127)
Q Consensus 970 l~-~n~~i~~~~~~wa~~v~~~Ll~ll~~~-~NFKVRi~AA~AL~ 1012 (1127)
+- .++.+... .--....++.|+.++.+- ++-.+|.+++.+|.
T Consensus 681 Lts~~~~ia~~-ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 681 IATTIPLIAKE-LLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHCHHHHHH-HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCCChHHHHH-HHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 84 34433100 001135677888888662 78999999999995
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00028 Score=80.40 Aligned_cols=201 Identities=16% Similarity=0.201 Sum_probs=131.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+..+++..+..+|...-=.+-.+... |++ -..+++++. .=++|.|+.||+.|.|+||.+ .++++++
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~-----~~e-~iLv~Nsl~-kDl~~~N~~iR~lALRtL~~I-------~~~~m~~ 138 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI-----AED-VIIVTSSLT-KDMTGKEDSYRGPAVRALCQI-------TDSTMLQ 138 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT-----SSC-GGGGHHHHH-HHHHSSCHHHHHHHHHHHHHH-------CCTTTHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC-----HHH-HHHHHHHHH-hhcCCCcHhHHHHHHHHHhcC-------CCHHHHH
Confidence 34678888999999887666654332 332 235555554 335789999999999999999 3455678
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRAL 917 (1127)
.....+...+.|+++.||-+|+.+..++... .++++...++....+..|.+ -|..||+.+|
T Consensus 139 ~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~------------------~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 139 AIERYMKQAIVDKVPSVSSSALVSSLHLLKC------------------SFDVVKRWVNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT------------------CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc------------------CHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 8888888899999999999999998877642 23445555555555566655 6889999988
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH---hhhccccccccCCCchhHHHHHHHHH
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS---NLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG---nl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
-.+.+ .+ ..++..|+..+..+..+-.|.-|.=|- .++..+ ++.-+..+++.|...
T Consensus 201 ~ei~~-------------~d----~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d-----~~~~~~~~~~~l~~~ 258 (355)
T 3tjz_B 201 YHVRK-------------ND----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE-----DGSRDSPLFDFIESC 258 (355)
T ss_dssp HHHHT-------------TC----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CC
T ss_pred HHHHh-------------hc----hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc-----chhhHHHHHHHHHHH
Confidence 88841 12 225666666666666777898888554 222221 123456778888888
Q ss_pred HhcCCChHHHHHHHHHhcCC
Q 035871 995 LRDSSNFKIRIQAAAALAVP 1014 (1127)
Q Consensus 995 l~~~~NFKVRi~AA~AL~~p 1014 (1127)
++ ++|--|-..|+.++...
T Consensus 259 L~-~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 259 LR-NKHEMVVYEAASAIVNL 277 (355)
T ss_dssp CC-CSSHHHHHHHHHHHTC-
T ss_pred Hc-CCChHHHHHHHHHHHhc
Confidence 85 57888999999999743
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00069 Score=82.31 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=76.1
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhc--cCCCHhHHHHHHHHHhhhh-cccccccchH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSAL--HDDVASVRSAACRAIGVIS-CFPQVSQSAE 835 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~--~De~~~VRaAA~RALGvlv-~~p~L~~d~~ 835 (1127)
+-.-++|+++.+|+.|++++++|+...+. +.++.. +..++ .|.+|.||-.|+-++..+. .+|.+-.+.
T Consensus 116 l~kDl~~~n~~ir~lALr~L~~i~~~e~~-------~~l~~~-v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~- 186 (621)
T 2vgl_A 116 IKNDLASRNPTFMGLALHCIANVGSREMA-------EAFAGE-IPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMG- 186 (621)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCCHHHH-------HHHTTH-HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCC-
T ss_pred HHHhcCCCCHHHHHHHHHHhhccCCHHHH-------HHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCch-
Confidence 33567899999999999999999865422 233332 34666 8999999999999998876 556655432
Q ss_pred HHHHHHHHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 836 IIDKFIHAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 836 fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
.+++.+...+.|+++.|+..|..+|..++.
T Consensus 187 ---~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 187 ---DWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp ---SCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 466777777899999999999999999986
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=6.9e-05 Score=80.73 Aligned_cols=187 Identities=17% Similarity=0.035 Sum_probs=113.6
Q ss_pred hhccCCCH--hHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 804 SALHDDVA--SVRSAACRAIGVISC-FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 804 ~~~~De~~--~VRaAA~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
..+..+++ .|+..|+++|..++. -+..+. ..+-...++.|...|..++..||..|+|||.||+..-..+...
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~-~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~---- 89 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARK-RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE---- 89 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHH-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH----
Confidence 34455555 899999999998863 111111 1112346889999999999999999999999998420011000
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc---c---
Q 035871 881 PSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT---T--- 954 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~---~--- 954 (1127)
......+..|++. |+. ..+..++.+|+.||.||...-.. -....+.+|..|++.+. .
T Consensus 90 -----I~~~GaI~~Lv~l-L~~-~~~~~~~e~a~~aL~nLS~~~~~----------k~~i~~~~i~~Lv~ll~~p~sG~~ 152 (233)
T 3tt9_A 90 -----VAELNGVPRLLQV-LKQ-TRDLETKKQITGLLWNLSSNDKL----------KNLMITEALLTLTENIIIPFSGWP 152 (233)
T ss_dssp -----HHHTTHHHHHHHH-HHH-CCCHHHHHHHHHHHHHHHTSGGG----------HHHHHHHHHHHHCCCCCHHHHCCC
T ss_pred -----HHHcCCHHHHHHH-Hcc-CCCHHHHHHHHHHHHHHHcChhh----------HHHHHhccHHHHHHHHhccccCCc
Confidence 0001123334332 111 23458999999999999621111 12345667888887652 1
Q ss_pred ----------CCccchhhHHHHHHhhhc-cccccccCCCchhHHHHHHHHHHhcC-----CChHHHHHHHHHhcC
Q 035871 955 ----------GNVKVQWNVCRALSNLFL-NETINLEDMDWAPSVFSILLLLLRDS-----SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 955 ----------~n~KVRWNAc~ALGnl~~-n~~i~~~~~~wa~~v~~~Ll~ll~~~-----~NFKVRi~AA~AL~~ 1013 (1127)
.+..|+-||+-+|.|+-. ++.... .+.-.+-+++.|..+++.+ .+-|.+-+|..+|..
T Consensus 153 ~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~-~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~n 226 (233)
T 3tt9_A 153 EGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK-AMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226 (233)
T ss_dssp GGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHH-HHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Confidence 245899999999999964 322210 0001122678888887653 245888899988864
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.036 Score=71.21 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=104.5
Q ss_pred CCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcC-----CCCcchhchHHHHHHhhhhhhhhcccccCCCCCC
Q 035871 809 DVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTH-----DPLVSVRITASWALANICDSIRHCIDDFAFKPSI 883 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~-----D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~ 883 (1127)
.++..|-||+.|+|.+.--+.-.....|+..+++.|+..++ |+..-||..++|.||.+++-+..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---------- 534 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---------- 534 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC----------
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc----------
Confidence 67999999999999986433222245677888888887765 566778888999999999977532
Q ss_pred cccccHHHHHHHHHHHHhhcc-CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhh
Q 035871 884 DSNANSHLMASLTESALNLTK-DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWN 962 (1127)
Q Consensus 884 ~~~is~~lL~~L~e~aL~a~~-D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWN 962 (1127)
++.|..+++..+.... ++++|..+|+.|+-+|.+-....-...+ ..+.....+.+++.+.++...-..+-+--
T Consensus 535 -----~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~-~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 535 -----WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ-PRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp -----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCC-TTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 2346666666666665 5568999999999999865442110000 00112356777778877777666777778
Q ss_pred HHHHHHhhhcc
Q 035871 963 VCRALSNLFLN 973 (1127)
Q Consensus 963 Ac~ALGnl~~n 973 (1127)
+..|+|.+.++
T Consensus 609 lyeai~~vi~~ 619 (1023)
T 4hat_C 609 FYKACGIIISE 619 (1023)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88889988765
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=78.79 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=120.4
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
.=++|+++.+|+.|.++|++|....+ -+.+.. .+..++.|.+|.||.+|+-+...+. ..+++.++.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~m-------~~~l~~-~lk~~L~d~~pyVRk~A~l~~~kL~-----~~~pe~v~~~ 177 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDSTM-------LQAIER-YMKQAIVDKVPSVSSSALVSSLHLL-----KCSFDVVKRW 177 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTTT-------HHHHHH-HHHHHHTCSSHHHHHHHHHHHHHHT-----TTCHHHHHTT
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHHH-------HHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHh-----ccCHHHHHHH
Confidence 45689999999999999999976542 123333 3557789999999999999887763 3456667889
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNL 920 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnL 920 (1127)
++.+...+.|++..|-..|-=+|-.|+.. .+..+.+|+...-+..--++-....-+|.++.+
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~------------------d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~ 239 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKN------------------DRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQ 239 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhh------------------chHHHHHHHHHHhcCCCcChHHHHHHHHHHHHh
Confidence 99999999999999998777777776632 122355555532110000122333345555544
Q ss_pred hhccccCCCCCCCCCCC-hhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 921 SRFVKYTSSSHPASLGD-SRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 921 l~~l~~~~~~~~~~~g~-~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
++ ++ +...+.+++.|..++++.+.-|-..|+.++=.+-..+.- -...+++.|-..+.+.+
T Consensus 240 ~~-------------~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~------~~~~a~~~L~~fLss~d 300 (355)
T 3tjz_B 240 LE-------------DEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK------ELAPAVSVLQLFCSSPK 300 (355)
T ss_dssp ------------------------------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSS
T ss_pred cc-------------ccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH------HHHHHHHHHHHHHcCCC
Confidence 31 12 233577888898999998888999999999776442211 11223455555665433
Q ss_pred ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHh
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENL 1038 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~ 1038 (1127)
--||.-|-.-|.... ..+|.++...-.-+|++
T Consensus 301 -~niryvaLr~L~~l~------~~~P~~v~~~n~~ie~l 332 (355)
T 3tjz_B 301 -AALRYAAVRTLNKVA------MKHPSAVTACNLDLENL 332 (355)
T ss_dssp -SSSHHHHHHCC---------------------------
T ss_pred -chHHHHHHHHHHHHH------HHCcHHHHHHHHHHHHH
Confidence 358998888886332 33445554443444443
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.11 Score=66.54 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=132.1
Q ss_pred hhHHHHHHHHHhccchhHH----------hhcchhHHHHHHHHHHhhhc-----cCCCHhHHHHHHHHHhhhhccccccc
Q 035871 768 SMVRTAAVTCFAGITSSVF----------FSLLKETQEFIISSLIDSAL-----HDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f----------~~Lp~~~q~~~i~~Lll~~~-----~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
-..+.+|+-||+.+|...- ..+|. ++. ++..++ .+..|.||..++.++|.|..|-. .
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~-----l~~-ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~--~ 528 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTV-----LSQ-ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD--Y 528 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCH-----HHH-HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG--T
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHH-----HHH-HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh--c
Confidence 3578999999888876431 12332 333 233333 38999999999999999975443 2
Q ss_pred chHHHHHHHHHHHH--hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhh----ccCC
Q 035871 833 SAEIIDKFIHAVEI--NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNL----TKDG 906 (1127)
Q Consensus 833 d~~fv~~ai~aLl~--~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a----~~D~ 906 (1127)
.+.|+..+++.++. .+.|++..||..|+.||.++|....... .+ ..+.++..+-. ++.. .++.
T Consensus 529 ~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L-----~~-----~~~~il~~l~~-lL~~~~~~~~~~ 597 (980)
T 3ibv_A 529 ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV-----VN-----YTESSLAMLGD-LLNISVSPVTDM 597 (980)
T ss_dssp CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC-----SS-----SHHHHHHHTTG-GGCCCCCCCCC-
T ss_pred CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh-----hh-----HHHHHHHHHHH-hhcCcCCCCCcc
Confidence 45678899999998 8999999999999999999999876433 22 11233333321 2211 1111
Q ss_pred c---------------hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHH----Hhhcc---C-Cccchh-h
Q 035871 907 D---------------KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALV----SCVTT---G-NVKVQW-N 962 (1127)
Q Consensus 907 D---------------KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLl----k~l~~---~-n~KVRW-N 962 (1127)
| +=+-.-..|+|.|........ ......++.++.-|+ +++.. + +.+++- -
T Consensus 598 ~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~------e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~ 671 (980)
T 3ibv_A 598 DAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTP------EEQALYCDSLINALIGKANAALSSDLSALENIISVYC 671 (980)
T ss_dssp -CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCH------HHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHH
T ss_pred cccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 1 124558899999986654211 011123444444433 33321 1 222211 1
Q ss_pred HHHHHHhhhc---cccccccCCCchh---HHHHHHHHHHhc-CCChHHHHHHHHHhc--CCCcccccCC----chHHHHH
Q 035871 963 VCRALSNLFL---NETINLEDMDWAP---SVFSILLLLLRD-SSNFKIRIQAAAALA--VPSSVSDYGK----SFSDVVQ 1029 (1127)
Q Consensus 963 Ac~ALGnl~~---n~~i~~~~~~wa~---~v~~~Ll~ll~~-~~NFKVRi~AA~AL~--~p~~R~~yG~----~~~~V~~ 1029 (1127)
...|+|.+.+ +. .....+|.. ++.+.++.++.. .++..||-.+..++. ++ .+|. +.+.++.
T Consensus 672 ~i~al~~lakgf~~~--~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~----~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 672 SLMAIGNFAKGFPAR--GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN----VVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHTSCSC--C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT----TTHHHHTTTHHHHHH
T ss_pred HHHHHHHHhccCCcc--cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----HccHhHHHHHHHHHH
Confidence 2445565543 21 111123443 344455555543 356779999998884 33 3554 4555555
Q ss_pred HHH
Q 035871 1030 GLE 1032 (1127)
Q Consensus 1030 ~L~ 1032 (1127)
.++
T Consensus 746 ~ll 748 (980)
T 3ibv_A 746 ILL 748 (980)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=71.01 Aligned_cols=187 Identities=16% Similarity=0.026 Sum_probs=111.5
Q ss_pred HHHHHccCCh--hHHHHHHHHHhccchhHHhhcchhHHH-----HHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 759 MPLILQHISS--MVRTAAVTCFAGITSSVFFSLLKETQE-----FIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 759 Lp~~l~d~~~--~VRaaAc~cLa~Igs~~f~~Lp~~~q~-----~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
|-..|+.+++ .++..|+.+|.++.... .+.+. ..|..|+ .+++.+++.|+..|++||++++.-..-.
T Consensus 13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-----~~~r~~I~~~G~Ip~LV-~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 13 AVSMLEADHMLPSRISAAATFIQHECFQK-----SEARKRVNQLRGILKLL-QLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHTTHHHHHH-HGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHcCC-----cHHHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3345676766 89999999998864221 11122 2455454 7778899999999999999997421111
Q ss_pred cchHHHHHHHHHHHHhcC-CCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHh---hcc---
Q 035871 832 QSAEIIDKFIHAVEINTH-DPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALN---LTK--- 904 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~-D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~---a~~--- 904 (1127)
.....-..+++.|+..+. .++..||..|+.+|-||+..-. +. ..+-...+..|++-.+. -..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k----------~~i~~~~i~~Lv~ll~~p~sG~~~~~ 155 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LK----------NLMITEALLTLTENIIIPFSGWPEGD 155 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GH----------HHHHHHHHHHHCCCCCHHHHCCCGGG
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hH----------HHHHhccHHHHHHHHhccccCCcccc
Confidence 111112346788888887 4688999999988888874210 00 01222233344331110 001
Q ss_pred -------CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChh-H--HHHHHHHHHHhhcc------CCccchhhHHHHHH
Q 035871 905 -------DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSR-W--LERIVQALVSCVTT------GNVKVQWNVCRALS 968 (1127)
Q Consensus 905 -------D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~-~--~E~~i~aLlk~l~~------~n~KVRWNAc~ALG 968 (1127)
.+..|+.||+-+|.||...- . +.+. . .+..|+.|+..++. .+-|.+=||.++|-
T Consensus 156 ~~~~~~~~~~~v~~na~~~L~nLss~~-~---------~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~ 225 (233)
T 3tt9_A 156 YPKANGLLDFDIFYNVTGCLRNMSSAG-A---------DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225 (233)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHTTSC-H---------HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcCC-H---------HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 12379999999999995210 0 0000 1 12356666665543 35789999999999
Q ss_pred hhhc
Q 035871 969 NLFL 972 (1127)
Q Consensus 969 nl~~ 972 (1127)
|+-.
T Consensus 226 nLs~ 229 (233)
T 3tt9_A 226 NLSY 229 (233)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9753
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=70.76 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRG 916 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRA 916 (1127)
++.+..|...++|++..|+.+|-.+|+++-..+- ...+...+..++...++.++++| ||.-+|.|+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~-------------~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~ 98 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRAD-------------SDLRMMVLERHLDVFINALSQENEKVTIKALRA 98 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-------------HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-------------ccccHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 4677788888999999999999999999987531 12334456677777777777655 999999999
Q ss_pred HhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 917 LGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
||.|+.-.+.. +.-..+++++|.+.++.+|.=.+--|+-.||.+ ..+ .-...|.+.|..++
T Consensus 99 L~~LLe~vpL~----------~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~------~~~~~V~~~l~sLl- 159 (265)
T 3b2a_A 99 LGYLVKDVPMG----------SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL------EDSKLVRTYINELV- 159 (265)
T ss_dssp HHHHHTTCCBC----------HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS------CCCHHHHHHHHHHH-
T ss_pred HHHHHcCCCCC----------HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc------cchHHHHHHHHHHH-
Confidence 99998444332 234788999999999989988899999999998 322 22578999999999
Q ss_pred cCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHH
Q 035871 997 DSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
.++|-.|+.-|-.||-..++|..=-+...+|.+.+-.-|.
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~ 199 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQ 199 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHT
T ss_pred hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHc
Confidence 7899999999989996555544322334445554444443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.011 Score=61.75 Aligned_cols=200 Identities=15% Similarity=0.178 Sum_probs=129.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKP 881 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~ 881 (1127)
+.+.|+-+.|+.-|.+.+-.+. -||.+ .+.++..|+-.+ .+.....-.--|.|+|-+..
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~~el------~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~------------- 99 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTREDL------YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK------------- 99 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCGGG------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-------------
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHhHHH------HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-------------
Confidence 6678888999999999988876 55555 345666665543 45555555666778887663
Q ss_pred CCcccccHHHHHHHHHHHHhh-ccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccch
Q 035871 882 SIDSNANSHLMASLTESALNL-TKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQ 960 (1127)
Q Consensus 882 ~~~~~is~~lL~~L~e~aL~a-~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVR 960 (1127)
+.|+.+.+++.....- .-..+|+|-|-..|||.+.+. ++.++-.++.-+...++++|--=|
T Consensus 100 -----i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-------------nP~l~~~v~rdi~smltskd~~Dk 161 (253)
T 2db0_A 100 -----EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-------------NPMLMASIVRDFMSMLSSKNREDK 161 (253)
T ss_dssp -----HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-------------CHHHHHHHHHHHHHHTSCSSHHHH
T ss_pred -----hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-------------ChHHHHHHHHHHHHHhcCCChHHH
Confidence 3345555555432211 123568999999999988632 344566777788888887775555
Q ss_pred hhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhcc
Q 035871 961 WNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGA 1040 (1127)
Q Consensus 961 WNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s 1040 (1127)
--|-.=+|.++-|. ..+...-.+.|..+| +++|--||.+|..+|+ +...--+.+-..+..-|+..
T Consensus 162 l~aLnFi~alGen~------~~yv~PfLprL~aLL-~D~deiVRaSaVEtL~------~lA~~npklRkii~~kl~e~-- 226 (253)
T 2db0_A 162 LTALNFIEAMGENS------FKYVNPFLPRIINLL-HDGDEIVRASAVEALV------HLATLNDKLRKVVIKRLEEL-- 226 (253)
T ss_dssp HHHHHHHHTCCTTT------HHHHGGGHHHHHGGG-GCSSHHHHHHHHHHHH------HHHTSCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccC------ccccCcchHHHHHHH-cCcchhhhHHHHHHHH------HHHHcCHHHHHHHHHHHHHh--
Confidence 55555556666552 122333457778888 7799999999999998 44444455666666777776
Q ss_pred CCCCCCccchhhHHH
Q 035871 1041 DHLSAPSSFKYRVAL 1055 (1127)
Q Consensus 1041 ~~~~df~Eykyrd~L 1055 (1127)
++.++-..++-+..|
T Consensus 227 ~D~S~lv~~~V~egL 241 (253)
T 2db0_A 227 NDTSSLVNKTVKEGI 241 (253)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH
Confidence 344544555555444
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0013 Score=71.27 Aligned_cols=24 Identities=29% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhh
Q 035871 801 LIDSALHDDVASVRSAACRAIGVI 824 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvl 824 (1127)
++..++.|+++.||.+|++.|+..
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l~~~ 77 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYSPVE 77 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSCGG
T ss_pred HHHHHhcCCCHHHHHHHHHhCCHH
Confidence 344667999999999999988644
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.077 Score=55.52 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=105.7
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHH
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKF 840 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~a 840 (1127)
..|.|.-=+||..|.+-+..|..+. .+.++-.+.-|+.-+-++|.-..-.+=+|++|+++ +..+..+..+
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~-----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la-----~i~Pe~v~~v 108 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTR-----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMA-----KEKPELVKSM 108 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHH-----HhCHHHHHhh
Confidence 4555655789999999999875443 23344444444433357888888888899999996 3456678899
Q ss_pred HHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCch-hhhhHHHHHhh
Q 035871 841 IHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDK-IKSNAVRGLGN 919 (1127)
Q Consensus 841 i~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DK-VRsnAvRALGn 919 (1127)
++.|..+..=-++..|++-+++|+.|.-+ .|+++..+.+-......++|. =|.-|.-=+|-
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIara------------------nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKA------------------NPMLMASIVRDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHH------------------CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHh------------------ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999988777889999999999999854 123333333332333334332 22222222222
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhh
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~ 971 (1127)
++ . ......--..+.|...+.|+|--||-.|..+||++-
T Consensus 171 lG----e---------n~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 171 MG----E---------NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209 (253)
T ss_dssp CC----T---------TTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred Hh----c---------cCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence 21 0 012233334556666666777777777777776664
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.36 E-value=0.1 Score=66.99 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=131.1
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhcc-----CCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALH-----DDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~-----De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
+-..|.++|=|+|.|....-+.-.+..-..++.. ++++++ |..+.||..++++||.|.-|- ..+..|+..++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~-Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl--~~~~~~L~~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD-LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHWNFLRTVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH--HHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-HHHhhhccccCcchHHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 4678999999999975432100001112235553 446665 566778999999999986443 34688899999
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNL 920 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnL 920 (1127)
+.|+..+.|+++.|...|+|||.+||+......... ++ . +.++ .+..+++.......+.+ +-+..+..|+|.+
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~--~~--~-e~~p-~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ--QP--R-ESEP-FIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSC--CT--T-CSSC-HHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcc--CC--C-CCch-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999754432110 10 0 1111 13333332222233333 5667899999999
Q ss_pred hhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCch-hHHHHHHHHHHhcCC
Q 035871 921 SRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA-PSVFSILLLLLRDSS 999 (1127)
Q Consensus 921 l~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa-~~v~~~Ll~ll~~~~ 999 (1127)
.+..+.+. .....++.|+.-+ ..+||....- .-.++.+ |. ......|..+++
T Consensus 617 i~~~~~~~-----------~~~~~l~~L~~~~-----~~~~~~l~~~--~~~~~~~------~~d~~~~~~l~~il~--- 669 (1023)
T 4hat_C 617 ISEERSVA-----------ERNRLLSDLMQLP-----NMAWDTIVEQ--STANPTL------LLDSETVKIIANIIK--- 669 (1023)
T ss_dssp HTTCCSHH-----------HHHHHHHHHTHHH-----HHHHHHHHHH--HHHCTTG------GGCHHHHHHHHHHHH---
T ss_pred HHhCCCHh-----------hHHHHHHHHHHhH-----HHHHHHHHHH--HhcCchh------hcCHHHHHHHHHHHH---
Confidence 85554321 1334444444332 3456554431 1223222 21 123445555553
Q ss_pred ChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHH
Q 035871 1000 NFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
+=...|.+||. .|..+...+|..++...+.
T Consensus 670 ---~~~~v~~~lg~-----~f~~~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 670 ---TNVAVCTSMGA-----DFYPQLGHIYYNMLQLYRA 699 (1023)
T ss_dssp ---HHHHHHHHHGG-----GGHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHH
Confidence 33345666763 3555555666666655544
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.036 Score=59.90 Aligned_cols=199 Identities=15% Similarity=0.035 Sum_probs=133.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|-.++.+.++.++..|.-+|..+-...=..+....-+.+...++ .+++++|--|--.|.|+||.+.---.+.. .+ .
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI-~llk~~dEkval~A~r~L~~LLe~vpL~~-~~-y 113 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFI-NALSQENEKVTIKALRALGYLVKDVPMGS-KT-F 113 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTCCSTTHHHHHHHHHHHHHHHTTCCBCH-HH-H
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHcCCCCCH-HH-H
Confidence 344577889999999999999987544211122233333444444 67799999999999999999974333332 23 4
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGL 917 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRAL 917 (1127)
.+.++++......++.-.|.-||-.||.+- . . ...+.++..+.+ .+ ...+-.|++-|.|||
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklk-v---------~------~~~~~V~~~l~s-Ll--~Skd~~vK~agl~~L 174 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQ-P---------L------EDSKLVRTYINE-LV--VSPDLYTKVAGFCLF 174 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCC-B---------S------CCCHHHHHHHHH-HH--TCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCC-c---------c------cchHHHHHHHHH-HH--hCCChhHHHHHHHHH
Confidence 688999999999999999999999999881 1 0 122333333322 22 345558999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhc
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRD 997 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~ 997 (1127)
-|++..-.+. ...+.+++.+-..++..|+-++=-|-.+|-+++.-+- .+.+.+.+..+++-
T Consensus 175 ~eia~~S~D~-----------~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi--------~~~~~~~~~~~~~~ 235 (265)
T 3b2a_A 175 LNMLNSSADS-----------GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPL--------LENVKIELLKISRI 235 (265)
T ss_dssp HHHGGGCSSC-----------CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC--------CSCCHHHHHHHHHH
T ss_pred HHhhcccCCH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc--------cHhHHHHHHHHHHH
Confidence 9997554433 3345555566666777788888888888888876531 23455666665543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.014 Score=71.47 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=48.5
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHH-HhcCCCCcchhchHHHHHHhhhhh
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVE-INTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl-~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
..++..++.+|..||.||++++.-|+.+. ..-.++.+..++ ..+.|++..||..|+|||+||+..
T Consensus 41 ~~L~S~~~~~r~~A~~al~~l~~~~~~~~-l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 41 KDLKSPDAKSRTTAAGAIANIVQDAKCRK-LLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcCcHHHH-HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44688999999999999999974333222 111245565554 458999999999999999999854
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.082 Score=57.03 Aligned_cols=184 Identities=10% Similarity=0.101 Sum_probs=115.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHH-H-----H--HHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQ-E-----F--IISSLIDSALHDDVASVRSAACRAIGVISCFPQV 830 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q-~-----~--~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L 830 (1127)
|...+.+.+=-.|-.|.+.|..+ |...+.+.- + + ++ .++-..+.|.|..|...|+.+|..++.+-..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~----~~~~~~~~~~~~~~~~~~~~~-~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQL----FRNSVGDISRDDNIQIYWRDP-TLFAQYITDSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH----HHTC----------CCTTSCT-HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhcccCcHHHHHHHHHHHHHH----HhhCcccccchhHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 33455666666788888877653 211111100 0 0 11 1334567899999999999999988743221
Q ss_pred c-----cchHHHHHHHHHHHHh-cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc
Q 035871 831 S-----QSAEIIDKFIHAVEIN-THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK 904 (1127)
Q Consensus 831 ~-----~d~~fv~~ai~aLl~~-l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~ 904 (1127)
. ....++..+++.|+.. +.|+...+|..|.-+|-.++... ..... +.+..+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~---------------~~~~~----~~e~l~~~l~ 149 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD---------------TSITQ----SVELVIPFFE 149 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS---------------SSSHH----HHHHHGGGGG
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc---------------CcHHH----HHHHHHHHHh
Confidence 1 1233456677777765 89999999988776665444321 01112 2233333344
Q ss_pred -CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhc
Q 035871 905 -DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972 (1127)
Q Consensus 905 -D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~ 972 (1127)
-+.|||..++..|..+++-...... .....+..++..|.+++.+.|..||=.|...++.+++
T Consensus 150 ~Knpkv~~~~l~~l~~~l~~fg~~~~------~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 150 KKLPKLIAAAANCVYELMAAFGLTNV------NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTTC------CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCcC------CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 5669999999999998865443322 1112356677788899999999999999999998875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.066 Score=57.78 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=96.5
Q ss_pred HHHccCChhHHHHHHHHHhccch---hHH--hhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchH
Q 035871 761 LILQHISSMVRTAAVTCFAGITS---SVF--FSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAE 835 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs---~~f--~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~ 835 (1127)
..+.|++..|...|++|+..+-. ..+ ..........++..++..++.|..+.+|..|..+|-.++-....
T Consensus 62 k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----- 136 (278)
T 4ffb_C 62 QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----- 136 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----
Confidence 45679999999999999875311 000 00011112345555665667899999999999998766522111
Q ss_pred HHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCccccc-HHHHHHHHHHHHhhccCCc-hhhhhH
Q 035871 836 IIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNAN-SHLMASLTESALNLTKDGD-KIKSNA 913 (1127)
Q Consensus 836 fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is-~~lL~~L~e~aL~a~~D~D-KVRsnA 913 (1127)
...+++.++..+.++++.||.-+.-.|.++-...... .++ ...+..+++.+.++.+|.| .||..|
T Consensus 137 -~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~------------~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 137 -ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT------------NVNVQTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp -SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT------------TCCHHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC------------cCCchhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 1355677888899999999988877777766543211 222 2345556666666678887 699999
Q ss_pred HHHHhhhhhccc
Q 035871 914 VRGLGNLSRFVK 925 (1127)
Q Consensus 914 vRALGnLl~~l~ 925 (1127)
...+|.+-+++-
T Consensus 204 ~~l~~~ly~~~G 215 (278)
T 4ffb_C 204 MNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHhC
Confidence 999999977665
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.051 Score=66.67 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc
Q 035871 761 LILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC 826 (1127)
Q Consensus 761 ~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~ 826 (1127)
..|+.+++..|..||.||++|-... ..-..-.++-++..+|..++.|++..||.+|+.||++++.
T Consensus 41 ~~L~S~~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 41 KDLKSPDAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4478889999999999999975322 0000111222333456677899999999999999999963
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.3 Score=62.96 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCC-HhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV-ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~-~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~ 846 (1127)
+..|..-.|||+.+|...- -.++.. .+..++ .... |+.+|+.....+ .-+. ..++.+..
T Consensus 339 ~~~r~~~lDal~~aGT~~a-------~~~i~~-----~i~~~~l~~~e--a~~~l~~~~~~~--~Pt~----e~l~~~~~ 398 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMATSEA-------LLFLKR-----TLASEQLTSAE--ATQIVASTLSNQ--QATR----ESLSYARE 398 (1056)
T ss_dssp HHHHHHHHHHHHHHCSHHH-------HHHHHH-----HHHTTCSCHHH--HHHHHHHHHHTC--CCCH----HHHHHHHH
T ss_pred HHHHHHHHHHhHhcCCHHH-------HHHHHH-----HHHcCCCCHHH--HHHHHHHhhccC--CCCH----HHHHHHHH
Confidence 5678889999999987541 122222 223222 2222 555555432211 1222 34444444
Q ss_pred hcCC----CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC-chhhhhHHHHHhhhh
Q 035871 847 NTHD----PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG-DKIKSNAVRGLGNLS 921 (1127)
Q Consensus 847 ~l~D----~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~-DKVRsnAvRALGnLl 921 (1127)
.+.+ ++..+|..|.-|+|+|......+... . . . ..-+.+...+.+ +...+ ..-+.-+.+||||++
T Consensus 399 l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~-c-~---~-~~v~~i~~~l~~----~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 399 LLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS-C-P---D-ELLQPLHDLLSQ----SSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS-C-C---G-GGTHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHT
T ss_pred HHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC-C-C---H-HHHHHHHHHHHH----HHhcCChHHHHHHHHHhhccC
Confidence 4433 45678889999999999876543210 0 0 1 111222233322 22322 456788999999996
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-------CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-------GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-------~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
.+ .+++.|.+++.. ....||--|..||.++-.+. -..+.+.|+.+
T Consensus 469 ---------------~p----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~---------p~~v~~il~~i 520 (1056)
T 1lsh_A 469 ---------------QP----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---------PRKVQEIVLPI 520 (1056)
T ss_dssp ---------------CG----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---------HHHHHHHHHHH
T ss_pred ---------------Ch----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---------hHHHHHHHHHH
Confidence 21 256677777742 23568889999998876432 24578888888
Q ss_pred Hh-cCCChHHHHHHHHHhc--CCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHh
Q 035871 995 LR-DSSNFKIRIQAAAALA--VPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKVLC 1071 (1127)
Q Consensus 995 l~-~~~NFKVRi~AA~AL~--~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~~~~ 1071 (1127)
.. ...+..|||-|...|. .| ...++..+...|+. +. -.|+++|....|+.+.
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~t~P---------~~~~l~~ia~~l~~---E~-------------~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFESKP---------SVALVSMVAVRLRR---EP-------------NLQVASFVYSQMRSLS 575 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTCC---------CHHHHHHHHHHHTT---CS-------------CHHHHHHHHHHHHHHT
T ss_pred hcCCCCChHHHHHHHHHHHHHCc---------CHHHHHHHHHHHhh---Cc-------------hHHHHHHHHHHHHHHH
Confidence 85 4577899999999996 23 12466666666653 10 3678888888887776
Q ss_pred hcccccccccccccCCCCchhHHHHHHHHHHHHHHH
Q 035871 1072 SSLGESTTHLENENNSVGNQKKEMISKAIRSLIEVY 1107 (1127)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1107 (1127)
.+= ++..+.+..+.+..++++
T Consensus 576 ~s~---------------~P~~~~la~~~~~a~~~l 596 (1056)
T 1lsh_A 576 RSS---------------NPEFRDVAAACSVAIKML 596 (1056)
T ss_dssp TCC---------------SGGGHHHHHHHHHHHTTS
T ss_pred hcC---------------CcchHHHHHHHHHHHHHh
Confidence 531 223445555666665554
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=94.50 E-value=0.11 Score=66.49 Aligned_cols=148 Identities=10% Similarity=0.087 Sum_probs=95.8
Q ss_pred CCCHhHHHHHHHHHhhhhcccccccc--hHHHHHHHHHHHHhcC-----CCCcchhchHHHHHHhhhhhhhhcccccCCC
Q 035871 808 DDVASVRSAACRAIGVISCFPQVSQS--AEIIDKFIHAVEINTH-----DPLVSVRITASWALANICDSIRHCIDDFAFK 880 (1127)
Q Consensus 808 De~~~VRaAA~RALGvlv~~p~L~~d--~~fv~~ai~aLl~~l~-----D~~~~VRikAAWALGNL~d~L~~~~~~~~~~ 880 (1127)
..++-.|-+|+.++|.+. ..+... ..|+...++.++...+ |+.+.||.++.|.+|.+++-+..+
T Consensus 464 ~~~W~~~eaal~algsia--~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~------- 534 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSIS--GTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH------- 534 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-------
T ss_pred CCCHHHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-------
Confidence 467889999999999874 222222 3455666666655332 567778888999999999765431
Q ss_pred CCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccc
Q 035871 881 PSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKV 959 (1127)
Q Consensus 881 ~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KV 959 (1127)
++.+..+++..+....| +.+|+..|+.|+.+|.+-....-.. .....-...++.+++.|...+..-+.+-
T Consensus 535 --------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~-~~~~~~~p~~~~il~~l~~~~~~~~~~~ 605 (1049)
T 3m1i_C 535 --------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI-QQPRESEPFIQTIIRDIQKTTADLQPQQ 605 (1049)
T ss_dssp --------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHS-CCTTCSSCHHHHHHHTHHHHHTTSCHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc-ccCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 23455566665655666 5689999999999998754321000 0000011246778887777776544555
Q ss_pred hhhHHHHHHhhhcc
Q 035871 960 QWNVCRALSNLFLN 973 (1127)
Q Consensus 960 RWNAc~ALGnl~~n 973 (1127)
+-....|+|.+...
T Consensus 606 ~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 606 VHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 66778888888754
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.12 Score=55.77 Aligned_cols=148 Identities=12% Similarity=0.191 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
..+.......|+...||.-|+.+||.+ ... .+.|..+-+- ...|.. .||-.++.++|
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------------------~~~L~~ir~~---va~D~~WrVre~lA~a~~ 129 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------------------KEILIFMRDE---VSKDNNWRVQEVLAKAFD 129 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------------------HHHHHHHHHT---GGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------------------HHHHHHHHHH---hCCCCCccHHHHHHHHHH
Confidence 333444446888899999999999977 210 1223333210 234444 89999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.++....+ |.+++.+..-+++.|+-||.=|+..+---...+.+ .-.+...-.++..+.++
T Consensus 130 ~~~~~~~p---------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~-----k~dp~~ll~iL~~L~~D 189 (240)
T 3l9t_A 130 EFCKKIEY---------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF-----KENPNEAIRRIADLKED 189 (240)
T ss_dssp HHHHHHCT---------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT-----TTCHHHHHHHHHTTTTC
T ss_pred HHHHhcCH---------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh-----hcCHHHHHHHHHHhcCC
Confidence 99732222 23556777888999999999888775210000110 11122333445556688
Q ss_pred CChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHH
Q 035871 999 SNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHIL 1035 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aL 1035 (1127)
+.|.||-+-|.+|. +|....|+.++..++..
T Consensus 190 ~s~yVrKSVan~Lr------D~SK~~Pd~V~~~~~~w 220 (240)
T 3l9t_A 190 VSEYVRKSVGNALR------DISKKFPDLVKIELKNW 220 (240)
T ss_dssp SCHHHHHHHHHHHH------HHHTTCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHH------HHhhhCHHHHHHHHHHh
Confidence 99999999999999 89999999998777654
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.98 E-value=7 Score=51.03 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCC------------CCcchhchHHHHHHhhhhhhhh
Q 035871 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHD------------PLVSVRITASWALANICDSIRH 872 (1127)
Q Consensus 807 ~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D------------~~~~VRikAAWALGNL~d~L~~ 872 (1127)
+.++|.+|..++..+|.|.-|-. ..+.|+..+++.|+..+.| .+..||..|+-+|..||.....
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~--~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVT--YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGG--TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56899999999999988765543 4567888999999887766 2347999999999999987543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=90.12 E-value=22 Score=45.56 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=115.5
Q ss_pred cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhh--hccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHH
Q 035871 765 HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDS--ALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKF 840 (1127)
Q Consensus 765 d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~--~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~a 840 (1127)
++.|.||..+|..+|.... -|.. ..+--..++.. ++. .+.|+++.||.+|+.++..++ +-+.|.. |++..
T Consensus 506 ~~hp~V~~~~~~~l~rys~-~~~~-~~~~l~~~L~~-ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~---~~~~i 579 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYAS-FFDY-ESAAIPALIEY-FVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN---YTESS 579 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGG-GGGT-CCTTHHHHHHH-HTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS---SHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHH-HhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh---HHHHH
Confidence 7789999999999999764 2222 22233345553 446 677899999999999999997 4344432 34555
Q ss_pred HHHHHHhcCC---CC------------------cchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHH---H
Q 035871 841 IHAVEINTHD---PL------------------VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASL---T 896 (1127)
Q Consensus 841 i~aLl~~l~D---~~------------------~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L---~ 896 (1127)
+..+...+.- +. .+=+..---|+|.+.+......+ +. -..-..++..+ +
T Consensus 580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e----~~---~~~l~~ll~pl~~~l 652 (980)
T 3ibv_A 580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPE----EQ---ALYCDSLINALIGKA 652 (980)
T ss_dssp HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHH----HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHH----HH---HHHHHHHHHHHHHHH
Confidence 5555443331 10 01234466677777765321110 00 00111122222 2
Q ss_pred HHHHhhccCC-c-hhhh-hHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc--cCCccchhhHHHHHHhhh
Q 035871 897 ESALNLTKDG-D-KIKS-NAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT--TGNVKVQWNVCRALSNLF 971 (1127)
Q Consensus 897 e~aL~a~~D~-D-KVRs-nAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~--~~n~KVRWNAc~ALGnl~ 971 (1127)
+..+.....+ + .++. ..+.|+|.+++.++..+. ++ ..-......+.+.++..+. .++..||=-+|.++.++.
T Consensus 653 ~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~-~~--~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i 729 (980)
T 3ibv_A 653 NAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS-EE--VAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRII 729 (980)
T ss_dssp HHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC--CC--CSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC-CC--CcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2333333333 2 2322 567888999887654321 11 0112235567777777776 577899999999999987
Q ss_pred ccccccccCCCchhHHHHHHH
Q 035871 972 LNETINLEDMDWAPSVFSILL 992 (1127)
Q Consensus 972 ~n~~i~~~~~~wa~~v~~~Ll 992 (1127)
.. +...-.+..+.+++.|+
T Consensus 730 ~~--lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 730 NV--VGPDMLPKVPQLISILL 748 (980)
T ss_dssp TT--THHHHTTTHHHHHHHHH
T ss_pred HH--ccHhHHHHHHHHHHHHH
Confidence 53 21112234444454444
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.11 E-value=3.7 Score=44.94 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=109.6
Q ss_pred cCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH----hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCC
Q 035871 807 HDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI----NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPS 882 (1127)
Q Consensus 807 ~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~----~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~ 882 (1127)
.+.|.--|-+|+..|-... .++..-+-..++.++. .+-|+|.+|=.++--.|.-+-+.+... ++.+.+
T Consensus 56 fs~d~k~~~~ale~L~~~l-----~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y~~~~- 127 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLA-----DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ETPMSQ- 127 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHH-----HHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TCCCCH-
T ss_pred cCCCHHHHHHHHHHHHHHh-----hhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--cccchH-
Confidence 3445555666655554331 1122111223333443 356999999999999999888887642 122211
Q ss_pred CcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhh
Q 035871 883 IDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWN 962 (1127)
Q Consensus 883 ~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWN 962 (1127)
.-...++..|++. +-+.+|+||..+-..|-.+....+ ..++++.+++.++++|.++|=-
T Consensus 128 ---~ea~~~lP~LveK---lGd~k~~vR~~~r~il~~l~~v~~---------------~~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 128 ---EEVSAFVPYLLLK---TGEAKDNMRTSVRDIVNVLSDVVG---------------PLKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp ---HHHHHHHHHHHHG---GGCSSHHHHHHHHHHHHHHHHHHC---------------HHHHHHHHHHGGGCSCHHHHHH
T ss_pred ---HHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHCC---------------HHHHHHHHHHHHccCCHHHHHH
Confidence 0112345555553 345566899887777765543322 3567888999999999999999
Q ss_pred HHHHHHhhhccccccccCCCchhHHH---HHHHHHHhcCCChHHHHHHHHHhc
Q 035871 963 VCRALSNLFLNETINLEDMDWAPSVF---SILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 963 Ac~ALGnl~~n~~i~~~~~~wa~~v~---~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
.+.-++.+...--+. ....+ +.++.++. ++|-.||-.|-.++.
T Consensus 187 ~l~~l~~li~~~G~~------~~~~l~~~~~ia~ll~-D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 187 CLLVIEYYITNAGIS------PLKSLSVEKTVAPFVG-DKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHHHHCSG------GGGGGCHHHHHGGGGG-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC------ccccccchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 999999997653222 13356 89999995 699999999999987
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=89.88 E-value=2.8 Score=53.62 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=148.6
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCC-CHhHHHHHHHHHhhhhc-ccccccchHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDD-VASVRSAACRAIGVISC-FPQVSQSAEIIDK 839 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De-~~~VRaAA~RALGvlv~-~p~L~~d~~fv~~ 839 (1127)
.+-|..+.||.+|-.|...| +..+|.+-...++..|+ ..+... .+..+.+|...++.++- .|..- ...+.+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~----~~~~~~~a~~~~~~~~~-~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~--~~~~~~ 175 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISI----VNAVNPVAIKALLPHLT-NAIVETNKWQEKIAILAAFSAMVDAAKDQV--ALRMPE 175 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHH----HHHSCGGGHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHSHHHH--HHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHHhHHHH--HHhccc
Confidence 34577899999998887764 55667666666777655 444544 69999999999999972 22211 223567
Q ss_pred HHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhh
Q 035871 840 FIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGN 919 (1127)
Q Consensus 840 ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGn 919 (1127)
.++.+...+.|.-..|.-.|--++-.+|..+. |.+ +-+ .+..|+++ ..+.++|- ..+..||.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d-----------~~~-~~~~~~~~----~~~p~~~~-~~~~~l~~ 237 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKD-----------IER-FIPSLIQC----IADPTEVP-ETVHLLGA 237 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTT-----------TGG-GHHHHHHH----HHCTTHHH-HHHHHHTT
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccc-----------hhh-hHHHHHHH----hcChhhhH-HHHHHhhc
Confidence 78888889999999999999999999997543 332 111 24555554 35666654 45777775
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSS 999 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~ 999 (1127)
- .+-.. -+..-+--+++-|...|+....-++.-+|--.+||.+=-.-+..-.+..+.+.|.|-+....-.
T Consensus 238 ~-------tfv~~---v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 238 T-------TFVAE---VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIA 307 (986)
T ss_dssp C-------CCCSC---CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCC
T ss_pred C-------eeEee---ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccC
Confidence 4 12111 2223355678889999988888888899999999864211111112345667888888888889
Q ss_pred ChHHHHHHHHHhcC
Q 035871 1000 NFKIRIQAAAALAV 1013 (1127)
Q Consensus 1000 NFKVRi~AA~AL~~ 1013 (1127)
+-.||--|..||.+
T Consensus 308 ~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 308 DPEAREVTLRALKT 321 (986)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999853
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=87.69 E-value=59 Score=41.80 Aligned_cols=268 Identities=11% Similarity=0.107 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 495 LHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 495 LHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
+-..|..++..-++. -..+..+..+.+..+.. +.+=|-++ .+.+.+.+.+-++.. .++-||-....+++..
T Consensus 55 ~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~---~~~e~~~~-~~~~~~~~~~~dk~~--~v~~aa~~~~~~~~~~ 125 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA---ANAMQAVAHIANQSNLS---PSVEPYIV-QLVPAICTNAGNKDK--EIQSVASETLISIVNA 125 (986)
T ss_dssp HHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCC---TTTHHHHH-TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCC---CCcccchH-HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHh
Confidence 445566666665555 66666777776555431 12222222 234444444555543 3777888888888887
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHh
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKA 654 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~ 654 (1127)
-+|..- . .+|+.|+.+......=..++-||+++..++..-|..+...+..+.-++.+++-+
T Consensus 126 ~~~~a~--~-----------------~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 186 (986)
T 2iw3_A 126 VNPVAI--K-----------------ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD 186 (986)
T ss_dssp SCGGGH--H-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHH--H-----------------HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc
Confidence 666442 1 245556666544444578999999999999877888887777777777777533
Q ss_pred hCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccch
Q 035871 655 ASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESS 734 (1127)
Q Consensus 655 ~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~ 734 (1127)
.-. .+..+|.+.+..+... .+..|+. ||
T Consensus 187 ~k~--------------------~v~~~~~~~~~~~~~~----~~n~d~~-------~~--------------------- 214 (986)
T 2iw3_A 187 TKK--------------------EVKAAATAAMTKATET----VDNKDIE-------RF--------------------- 214 (986)
T ss_dssp SSH--------------------HHHHHHHHHHHHHGGG----CCCTTTG-------GG---------------------
T ss_pred CcH--------------------HHHHHHHHHHHHHHhc----CCCcchh-------hh---------------------
Confidence 211 4555677777655321 1111111 00
Q ss_pred hhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHH
Q 035871 735 EDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVR 814 (1127)
Q Consensus 735 ~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VR 814 (1127)
.| .|..++.+++. .-.|+-.+++..|..-=..--..++..|+...+++....++
T Consensus 215 ------~~---------------~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 215 ------IP---------------SLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 268 (986)
T ss_dssp ------HH---------------HHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred ------HH---------------HHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhh
Confidence 01 22234444432 11233333333344322222233444577777899999999
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHH----HHHHHhc-CCCCcchhchHHHHHHhhhhhhh
Q 035871 815 SAACRAIGVISCFPQVSQSAEIIDKFI----HAVEINT-HDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 815 aAA~RALGvlv~~p~L~~d~~fv~~ai----~aLl~~l-~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
-.++=.+++++. |-+|+.-+..|+ +.+.+.. +=.++.||-.|..|+.-|.....
T Consensus 269 r~~~~~~~n~~~---lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 269 RKSAVIIDNMCK---LVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHT---TCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEEcchhh---hcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 888888888863 345655455555 4444433 35667899999999998876543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.73 E-value=1.5 Score=47.37 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
.-.|++-.||..++.+++.+-.. .=|+. .+. ++...++|+|+.||-+|+..+=.++.-|.+..|+ +.++
T Consensus 112 va~D~~WrVre~lA~a~~~~~~~---~~pe~----~l~-~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp---~~ll 180 (240)
T 3l9t_A 112 VSKDNNWRVQEVLAKAFDEFCKK---IEYKK----ALP-IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENP---NEAI 180 (240)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---HCTTT----THH-HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCH---HHHH
T ss_pred hCCCCCccHHHHHHHHHHHHHHh---cCHHH----HHH-HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCH---HHHH
Confidence 34577889999999999975421 11211 222 3457789999999999998875566556666776 5667
Q ss_pred HHHHHhcCCCCcchhchHHHHHHhhhh
Q 035871 842 HAVEINTHDPLVSVRITASWALANICD 868 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWALGNL~d 868 (1127)
+.|.....|++.-||-.-+|+|-.++-
T Consensus 181 ~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 181 RRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp HHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 777778899999999999999998874
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=83.11 E-value=54 Score=40.20 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=119.5
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHH------HHHHhhhccCCCHhHHHHHHHHHhhhhcccc-c
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFII------SSLIDSALHDDVASVRSAACRAIGVISCFPQ-V 830 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i------~~Lll~~~~De~~~VRaAA~RALGvlv~~p~-L 830 (1127)
.|-.+|+.++..+|-.++.+|..+-... |.+.|+.++ +.| ..+++|+...||..|.-.|..++.-.. +
T Consensus 126 ~Ll~lL~~~df~vR~~alqlL~~L~~~r----~~~~Q~~Il~~p~gi~~L-v~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 126 LLLSLLEEFDFHVRWPGVKLLTSLLKQL----GPQVQQIILVSPMGVSRL-MDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHS----HHHHHHHHHHSTTHHHHH-HGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHhcC----cHHHHHHHHhCcccHHHH-HHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 3446678889999999999999875432 333455544 224 477899999999999999998862111 1
Q ss_pred ccchHHHHHHHHHHHHhcCCCCc----chhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCC
Q 035871 831 SQSAEIIDKFIHAVEINTHDPLV----SVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDG 906 (1127)
Q Consensus 831 ~~d~~fv~~ai~aLl~~l~D~~~----~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~ 906 (1127)
..=..| +.+.+.|...++.... .|=....-.|.||...=..|..- |.+ ....+. |..|++ . +.
T Consensus 201 QklVAF-EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~--FrE---t~~i~~-L~~LL~----~--~~ 267 (651)
T 3grl_A 201 QKIVAF-ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNF--FKE---GSYIQR-MKPWFE----V--GD 267 (651)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHH--HHH---TTCGGG-GGGGGC----C--CS
T ss_pred HHHHHH-hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHH--HHH---cCCHHH-HHHHhC----C--Cc
Confidence 110111 2334455544443332 22223333355555421111100 000 000000 111211 1 11
Q ss_pred ch------hhhhHHHHHhhhhhccccCCCC-CCCCCCChhHHHHHHHHHHHhhccC--CccchhhHHHHHHhhhccccc-
Q 035871 907 DK------IKSNAVRGLGNLSRFVKYTSSS-HPASLGDSRWLERIVQALVSCVTTG--NVKVQWNVCRALSNLFLNETI- 976 (1127)
Q Consensus 907 DK------VRsnAvRALGnLl~~l~~~~~~-~~~~~g~~~~~E~~i~aLlk~l~~~--n~KVRWNAc~ALGnl~~n~~i- 976 (1127)
+. .-.|..-+|.-+--++.+.... +...++..-+-..++..|++.+... ..+||-.|..++|.+.++...
T Consensus 268 ~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~ 347 (651)
T 3grl_A 268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347 (651)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 11 2334333332222112211100 0000011112334566777776543 578999999999998754322
Q ss_pred c-------ccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 977 N-------LEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 977 ~-------~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
. .+..+-.+.++..|+..+.+..-|.+|..|+..|.
T Consensus 348 Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 348 QDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390 (651)
T ss_dssp HHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 11111234566667777777777999999988875
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=82.11 E-value=52 Score=42.68 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHhccchhHHhhcch-hH---HHHHHHHHHhhhccCC-----CHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLK-ET---QEFIISSLIDSALHDD-----VASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~-~~---q~~~i~~Lll~~~~De-----~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
+-..+.++|=|+|.|.. . +.. .. -..++. .++.+++.. -+.|++..+..+|.|.-|- ..+..|+
T Consensus 492 sW~~lea~~~aigaIag-~---~~~~~E~~~Lp~vi~-~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl--~~h~~~L 564 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISG-A---MHEEDEKRFLVTVIK-DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL--RAHWKFL 564 (1073)
T ss_dssp CHHHHHHHHHHHHHTTT-S---SCHHHHHHHHHHHHH-HHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH--HHCHHHH
T ss_pred CHHHHhHHHHHHHHHHC-c---CCcccccchHHHHHH-HHhcccccccccchhHHHHHHHHHHHhhhHHHH--HhCHHHH
Confidence 36789999999999943 2 222 12 123555 344666433 4557777789999986443 3568899
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhc
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHC 873 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~ 873 (1127)
+..++.|++.++|++..|+.-|+=||..||......
T Consensus 565 ~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 565 KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875543
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=81.39 E-value=13 Score=40.77 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=117.0
Q ss_pred hhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhh----hccCCCHhHHHHHHHHHhhhh
Q 035871 750 QWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDS----ALHDDVASVRSAACRAIGVIS 825 (1127)
Q Consensus 750 ~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~----~~~De~~~VRaAA~RALGvlv 825 (1127)
.|...+..-+-..+.+.+..-|-+|++.|-..-++. |+ .-..++. +++. .+.|.|+.|-..+...|..++
T Consensus 42 ~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~----~~-~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~ 115 (266)
T 2of3_A 42 LLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTS----PR-SLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIV 115 (266)
T ss_dssp HHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHC----HH-HHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhC----hH-HHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 444444555556667778888888888887732221 11 1111111 1222 235899999999999887764
Q ss_pred ccc-ccc-cchHH-HHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHH-HHHHHHHHHHh
Q 035871 826 CFP-QVS-QSAEI-IDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSH-LMASLTESALN 901 (1127)
Q Consensus 826 ~~p-~L~-~d~~f-v~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~-lL~~L~e~aL~ 901 (1127)
..- ... .-..+ ...+++.|+..+.|+...||.++--.|-.|+.. .+++ +...+++ ++
T Consensus 116 ~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-----------------~~~~~v~~~l~~-g~- 176 (266)
T 2of3_A 116 ELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-----------------VGPLKMTPMLLD-AL- 176 (266)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----------------HCHHHHHHHHHH-GG-
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-----------------CCHHHHHHHHHH-HH-
Confidence 211 100 00112 357789999999999999999888777666532 2232 3444555 22
Q ss_pred hccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHH---HHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 902 LTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIV---QALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 902 a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i---~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
..-|-++|.-...-+|.+..---. . ..+++ ..+.+++.|.|..||=.|-.++..+++.
T Consensus 177 -ksKN~R~R~e~l~~l~~li~~~G~-----------~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 177 -KSKNARQRSECLLVIEYYITNAGI-----------S--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp -GCSCHHHHHHHHHHHHHHHHHHCS-----------G--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHHHHHhcCC-----------C--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 223458999999999988532111 1 12356 8889999999999999998888877754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1127 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 7e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.002 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 2e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 0.002 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-05 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-05 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-04 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-04 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.002 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 2e-09
Identities = 31/243 (12%), Positives = 75/243 (30%), Gaps = 25/243 (10%)
Query: 770 VRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQ 829
R A L +++ ++ ++ L D V++ A + +G + +
Sbjct: 19 FRFMATNDLMTELQKDSIKLDDDSERKVVKMIL-KLLEDKNGEVQNLAVKCLGPLVSKVK 77
Query: 830 VSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS 889
Q I+D + +R +S L + + A ++
Sbjct: 78 EYQVETIVDTLCTNML----SDKEQLRDISSIGLKTVIGELPPASSGSALAANV----CK 129
Query: 890 HLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALV 949
+ LT + ++ ++ A+ + ++ S L + I+ L+
Sbjct: 130 KITGRLTSAIAK--QEDVSVQLEALDIMADM-------LSRQGGLL--VNFHPSILTCLL 178
Query: 950 SCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAA 1009
+T+ + V+ AL +L + + LL L + +
Sbjct: 179 PQLTSPRLAVRKRTIIALGHL-----VMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 233
Query: 1010 ALA 1012
+A
Sbjct: 234 CIA 236
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 7e-06
Identities = 79/637 (12%), Positives = 180/637 (28%), Gaps = 62/637 (9%)
Query: 389 QSSKVRVAALVCLQDLCRADPKSFTTQWTILLPT-NDVLRPRKFEATLMTCLLFDPCLKA 447
+S K R L +L P + T +L+P L + + L L +
Sbjct: 443 KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 502
Query: 448 RMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRET 507
S + + + ++ +I L
Sbjct: 503 CNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQP-----SSFD 557
Query: 508 HDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISC 567
+ LF + + + E + + + + + L +D L +
Sbjct: 558 ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD--NLGSDLPNTLQIFLER 615
Query: 568 LTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALR 627
L ++ VK + L S +++ G +L R A+ +L AL
Sbjct: 616 LKNEITRLTT---VKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 672
Query: 628 AVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIG-------EKVV 680
+ NY + +++ L + S ++ + A ++
Sbjct: 673 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 732
Query: 681 TAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKES 740
I ++ L D ++ + + + + P+Y Q ++ K+S
Sbjct: 733 NELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQS 792
Query: 741 ----AKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF 796
AK + + + + +Q + + T ++ A ++ + + +
Sbjct: 793 YYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQL 852
Query: 797 IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVR 856
+ S+I A V+SAA A+G IS V E + + + +
Sbjct: 853 ELKSVILEAFSSPSEEVKSAASYALGSIS----VGNLPEYLPFVLQEITSQP-----KRQ 903
Query: 857 ITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRG 916
+L I + ++ + + ++
Sbjct: 904 YLLLHSLKEI------------ISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 951
Query: 917 LGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETI 976
LG L+ E ++ L + +G+ + +V A+ +
Sbjct: 952 LGKLTLID----------------PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 977 NLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013
++ + L L D +R A
Sbjct: 996 PID--PLLKNCIGDFLKTLEDPDL-NVRRVALVTFNS 1029
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 0.002
Identities = 79/660 (11%), Positives = 180/660 (27%), Gaps = 77/660 (11%)
Query: 389 QSSKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKAR 448
++ +V+ A+ CL L Q ++ TL T + + R
Sbjct: 57 KNGEVQNLAVKCLGPLVSKVK---EYQVETIVD------------TLCT-NMLSDKEQLR 100
Query: 449 MASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETH 508
S+ L ++ A K TS I ++
Sbjct: 101 DISSIGLKTVIGELPPASSGSALAANVCK--KITGRLTSA--------------IAKQED 144
Query: 509 DRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCL 568
+ I+ ++S G L+ N S+ + L + + + I L
Sbjct: 145 VSVQLEALDIMADMLSRQ------GGLLVNFHPSILTCLLPQ--LTSPRLAVRKRTIIAL 196
Query: 569 TAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRA 628
+ + V V + +L L + S + +Q + A
Sbjct: 197 GHLVMSCGNIVFVDLI---------------EHLLSELSKND----SMSTTRTYIQCIAA 237
Query: 629 VSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWK--GHVGNTAGFIGEKVVTAAIKV 686
+S + + Y +++ +V K E+ + V+ I +
Sbjct: 238 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINI 297
Query: 687 LDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQS 746
+ L + ++ D+ +D D + + + S + + +AK +
Sbjct: 298 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDD-DMSWKVRRAAAKCLDA 356
Query: 747 GSEQWSEMIEKHMPLILQHISSMV--RTAAVTCFAGITSSVFFSLLKETQEFIISSLIDS 804
EM+ + + + S R V + Q ++
Sbjct: 357 VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 416
Query: 805 ALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASW--- 861
+ ++S + + + F E+ P +
Sbjct: 417 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 476
Query: 862 ---ALANICDSIRHCIDDFAFKPSIDSNANS-----HLMASLTESALNLTKDGDKIKSNA 913
+L + S ID + I N + H+ A + + KI S A
Sbjct: 477 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 536
Query: 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973
+ L + ++ + +++ + + + ++ + +
Sbjct: 537 LLVTQQLVKVIRPLDQPSSFDA--TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 594
Query: 974 ETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEH 1033
+ P+ I L L++ ++A +A D + V L
Sbjct: 595 CNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILAS 654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 1e-05
Identities = 42/292 (14%), Positives = 93/292 (31%), Gaps = 51/292 (17%)
Query: 751 WSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDV 810
M+ P + A+ +G+ + ++ + I +L+ + D +
Sbjct: 619 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 678
Query: 811 ASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSI 870
VR ++ +G ++ I F+ + N + +SV A+WA+ I +
Sbjct: 679 PEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM 737
Query: 871 RHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSS 930
+P I ++ L E +N + N +G L
Sbjct: 738 GI-----EMQPYIPM-----VLHQLVE-IINRPNTPKTLLENTAITIGRLGYV------- 779
Query: 931 HPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSI 990
P + L++ ++ C +L N+ D + S F
Sbjct: 780 CPQEVAPM--LQQFIRPW---------------CTSLR--------NIRDNEEKDSAFRG 814
Query: 991 LLLLLRDS-----SNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILEN 1037
+ ++ + +F A A+ P D F ++ G ++ + +
Sbjct: 815 ICTMISVNPSGVIQDFIFFCDAVASWINPK--DDLRDMFCKILHGFKNQVGD 864
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 2e-05
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 3/169 (1%)
Query: 715 SDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAA 774
D I ++ EQ + A + + +
Sbjct: 286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 345
Query: 775 VTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSA 834
AG+ + + ++ + I + + R AA A G I P+ SQ
Sbjct: 346 A---AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 402
Query: 835 EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSI 883
++ + + + DP V VR TA+W + IC+ + + + +
Sbjct: 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 451
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.002
Identities = 22/233 (9%), Positives = 64/233 (27%), Gaps = 20/233 (8%)
Query: 749 EQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHD 808
E I + + Q + VR AA+ S+++ ++ + ++ A+
Sbjct: 211 ESERHFIMQVVCEATQCPDTRVRVAALQNLV-KIMSLYYQYMETYMGPALFAITIEAMKS 269
Query: 809 DVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866
D+ V + +++E ++ + +++ +
Sbjct: 270 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329
Query: 867 CDSIRHCIDDFAFKPSIDSNANSHLMASLTESAL---------NLTKDGDKIKSNAVRGL 917
+ DD L + + ++ + + AV
Sbjct: 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF 389
Query: 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNL 970
G + P + + + L+ + +V V+ + +
Sbjct: 390 GCIL--------EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 434
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 8e-05
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 7/141 (4%)
Query: 743 AFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLI 802
A Q G E + E + L +R AA + + KE I +
Sbjct: 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK----FGKEWAHATIIPKV 485
Query: 803 DSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWA 862
+ D R I V+S +V + V DP+ +VR + +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLS---EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 863 LANICDSIRHCIDDFAFKPSI 883
L I + + KP +
Sbjct: 543 LQKIGPILDNSTLQSEVKPIL 563
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 41/341 (12%), Positives = 98/341 (28%), Gaps = 27/341 (7%)
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI-HAVEINTHDPLVSVR 856
I L+D L +V+ AA A+ + ++ I AV + ++
Sbjct: 46 ICKLVD-LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104
Query: 857 ITASWALANICDS--IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAV 914
+ L N+ + ++ + A D S ++ ++ NA
Sbjct: 105 KQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164
Query: 915 RGLGNLSR-------------FVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQW 961
L NLS + + + SR ++ V+ + + + ++
Sbjct: 165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224
Query: 962 NVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAAL---------A 1012
V L N + + ++ ++ + + + A
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 1013 VPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKS-SFLEEWFKVLC 1071
+ + ++ GKS D SS ++ K+K + +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 1072 SSLGESTTHLENENNSVGNQKKEMISKAIRSLIEVYEGRKQ 1112
S + S L + + + M ++ + +
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTG 385
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 51/422 (12%), Positives = 111/422 (26%), Gaps = 26/422 (6%)
Query: 564 AISCLTAALSTSPAPVQVKQMF-LEEISAGSVEVDK---RSGVLFTLLQCSERLASPAIC 619
I L L + VQ L + S R + + R + I
Sbjct: 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104
Query: 620 FESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWK-GHVGNTAGFIGEK 678
+ L +S + + +++ S + V + F
Sbjct: 105 KQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164
Query: 679 VVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIK 738
+ D + + + G D L + + S C + + S
Sbjct: 165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA 224
Query: 739 ESAKAFQSGSEQ-WSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFI 797
E ++ + EK + S + C +
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 798 ISSLIDSALHDDVASVRSAACRAIGVIS-----CFPQVSQSAEIIDKFIHAVEINTHDPL 852
I + ++ + A A+ ++ +SQ + +K + +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 853 VSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSN 912
V + + L+N+ + + + LT N + + I S+
Sbjct: 345 SDVVRSGASLLSNMSRHPLL-------HRVMGNQVFPEVTRLLTSHTGNTSNS-EDILSS 396
Query: 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFL 972
A + NL + S L I+ S + + K LS+++
Sbjct: 397 ACYTVRNLMA----SQPQLAKQYFSSSMLNNIINLCRS---SASPKAAEAARLLLSDMWS 449
Query: 973 NE 974
++
Sbjct: 450 SK 451
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 0.002
Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 18/187 (9%)
Query: 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSID------S 885
+ + + + +H PL+ + LA + + A +
Sbjct: 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411
Query: 886 NANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIV 945
+ T+ ++I L L+R + + +
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-----DVHNRIVIRG----LNTI 462
Query: 946 QALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRI 1005
V + + +Q L L ++ + A + L LL S N +
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLH-SRNEGVAT 519
Query: 1006 QAAAALA 1012
AAA L
Sbjct: 520 YAAAVLF 526
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1127 | |||
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.57 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.48 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.47 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.43 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.41 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.4 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.35 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.31 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.15 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.11 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 99.05 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.01 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.96 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.75 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.75 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.74 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.71 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.55 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.44 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.24 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 98.09 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.0 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.88 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.83 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.68 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 90.3 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 83.09 |
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.3e-13 Score=156.75 Aligned_cols=480 Identities=13% Similarity=0.111 Sum_probs=274.2
Q ss_pred hhHHHHHHHHHHHHhhCC-ccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhh
Q 035871 392 KVRVAALVCLQDLCRADP-KSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVA 470 (1127)
Q Consensus 392 kVR~~AL~~L~al~k~~~-K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~A 470 (1127)
.||..|..+|..+++..+ ..+..++ .+++..+..++...+|..|+.++..++.......
T Consensus 102 ~Vr~~a~~~l~~i~~~~~~~~~~~~l----------------~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---- 161 (588)
T d1b3ua_ 102 VVRDKAVESLRAISHEHSPSDLEAHF----------------VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---- 161 (588)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHTH----------------HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH----------------HHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH----
Confidence 599999999999887533 3333221 2355667777888899999988887765532211
Q ss_pred hhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhc
Q 035871 471 EYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEG 550 (1127)
Q Consensus 471 E~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~ 550 (1127)
..++-..+...++ ..++.+...+.++++.++...+.+.....+++. +...
T Consensus 162 ---------------------~~~l~~~~~~l~~-D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~--------l~~l 211 (588)
T d1b3ua_ 162 ---------------------KAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM--------FSNL 211 (588)
T ss_dssp ---------------------HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHH--------HHHH
T ss_pred ---------------------HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH--------HHHH
Confidence 1122233333444 467889999999999999987654333333332 2221
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHH
Q 035871 551 FPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVS 630 (1127)
Q Consensus 551 ~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala 630 (1127)
..+..+ .+|.+++.+++.+....+... .... ++..+.+.. ++....||..+.+.|..++
T Consensus 212 ~~d~~~--~vr~~a~~~l~~i~~~~~~~~-~~~~-----------------i~~~l~~~~-~D~~~~Vr~~~~~~l~~l~ 270 (588)
T d1b3ua_ 212 ASDEQD--SVRLLAVEACVNIAQLLPQED-LEAL-----------------VMPTLRQAA-EDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HTCSCH--HHHTTHHHHHHHHHHHSCHHH-HHHH-----------------THHHHHHHH-TCSSHHHHHHHHHTHHHHH
T ss_pred hcCCch--hhHHHHHHHHHHhhccCCHHH-HHHH-----------------HHHHHHHhc-ccccHHHHHHHHHhHHHHH
Confidence 223223 367788888888776443321 1111 112222222 2444568999999998888
Q ss_pred hhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccC
Q 035871 631 HNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLD 710 (1127)
Q Consensus 631 ~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d 710 (1127)
...+.-. ....+...+..++++.. ..+...|.+.+..+.+.... ..... ...+
T Consensus 271 ~~~~~~~--~~~~l~~~l~~ll~d~~--------------------~~vr~~a~~~l~~~~~~l~~----~~~~~-~~~~ 323 (588)
T d1b3ua_ 271 KAVGPEI--TKTDLVPAFQNLMKDCE--------------------AEVRAAASHKVKEFCENLSA----DCREN-VIMS 323 (588)
T ss_dssp HHHCHHH--HHHTHHHHHHHHHTCSS--------------------HHHHHHHHHHHHHHHHTSCT----TTHHH-HHHH
T ss_pred HHhhhhh--hhhhhhHHHHHHHhccc--------------------hHHHHHHHHHHHHHHHHHhh----hhhhh-hhHH
Confidence 6543211 11233444455543211 13444555555554432210 00000 0000
Q ss_pred CCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcc
Q 035871 711 NPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLL 790 (1127)
Q Consensus 711 ~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp 790 (1127)
.+-+++........+..+.....-+..-++ ..+......-+-..+...++|+++.||..+..+++.+... ++
T Consensus 324 --~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~--~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~----~~ 395 (588)
T d1b3ua_ 324 --QILPCIKELVSDANQHVKSALASVIMGLSP--ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV----IG 395 (588)
T ss_dssp --THHHHHHHHHTCSCHHHHHHHHTTGGGGHH--HHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH----SC
T ss_pred --HHHHHHHHhhcCCChHHHHHHHHHHhhhhh--ccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh----cc
Confidence 000000000000000000000000000000 0111111111112334567889999999999999886532 22
Q ss_pred -hhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhh
Q 035871 791 -KETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDS 869 (1127)
Q Consensus 791 -~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~ 869 (1127)
......++.. +....+|.++.||.+++.++|.++.. ++. ..|.+...+.+...+.|+...||..|+++||.+...
T Consensus 396 ~~~~~~~ll~~-l~~~~~d~~~~~r~~~~~~l~~l~~~--~~~-~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~ 471 (588)
T d1b3ua_ 396 IRQLSQSLLPA-IVELAEDAKWRVRLAIIEYMPLLAGQ--LGV-EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHH-HHHHHTCSSHHHHHHHHHHHHHHHHH--HCG-GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHH--cCh-HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 1223445554 34667999999999999999988621 111 122345667777789999999999999999999876
Q ss_pred hhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHH
Q 035871 870 IRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQAL 948 (1127)
Q Consensus 870 L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aL 948 (1127)
+.... . ...++....+..+|.+ .+|..++.++|.+...+..+ ...+.+++.|
T Consensus 472 ~~~~~------------~----~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~-----------~~~~~ilp~l 524 (588)
T d1b3ua_ 472 FGKEW------------A----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITTKHMLPTV 524 (588)
T ss_dssp HCHHH------------H----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHTHHHH
T ss_pred hCcHH------------H----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH-----------HHHHHHHHHH
Confidence 54311 1 1223333334456655 79999999999997554432 2357788999
Q ss_pred HHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcC
Q 035871 949 VSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 949 lk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
++.+.|..+.||.+||.+|++++..-. ...+... +..++..+.+|++-.||--|..||..
T Consensus 525 l~~~~D~v~nVR~~a~~~l~~i~~~~~----~~~~~~~-i~~~l~~L~~D~d~dVr~~A~~al~~ 584 (588)
T d1b3ua_ 525 LRMAGDPVANVRFNVAKSLQKIGPILD----NSTLQSE-VKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGGGSC----HHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHcC----cHhHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999975321 1112233 44455556688999999999999964
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.6e-12 Score=146.59 Aligned_cols=407 Identities=14% Similarity=0.123 Sum_probs=246.8
Q ss_pred hhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 035871 437 TCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLF 516 (1127)
Q Consensus 437 t~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlL 516 (1127)
..++.|+++.||.+|+..+..+.....+.-+. . .|.| ++..|..+........+.
T Consensus 93 ~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~------~----~l~p---------------~i~~L~~~~~~~~r~~a~ 147 (588)
T d1b3ua_ 93 ESLATVEETVVRDKAVESLRAISHEHSPSDLE------A----HFVP---------------LVKRLAGGDWFTSRTSAC 147 (588)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHH------H----THHH---------------HHHHHHTCSSHHHHHHHG
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHhCCHHHHH------H----HHHH---------------HHHHHhcccchHHHHHHH
Confidence 34668889999999999998887654332110 0 1111 222233334443433333
Q ss_pred HHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCC
Q 035871 517 KILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEV 596 (1127)
Q Consensus 517 KcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~ 596 (1127)
+.+..+ |.++..+....+...+...+. +. + ..+|.++..+++.+...-+......
T Consensus 148 ~ll~~~-----~~~~~~~~~~~l~~~~~~l~~----D~-~-~~VR~~a~~~l~~~~~~~~~~~~~~-------------- 202 (588)
T d1b3ua_ 148 GLFSVC-----YPRVSSAVKAELRQYFRNLCS----DD-T-PMVRRAAASKLGEFAKVLELDNVKS-------------- 202 (588)
T ss_dssp GGHHHH-----TTTSCHHHHHHHHHHHHHHHT----CS-C-HHHHHHHHHHHHHHHHTSCHHHHHH--------------
T ss_pred HHHHHH-----HHHhhHHHHHHHHHHHHHHhc----cC-C-HHHHHHHHHHHHHHHHHhcHHHHHH--------------
Confidence 333333 445554444444444333332 22 2 3477788888888776543221110
Q ss_pred CCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccc
Q 035871 597 DKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIG 676 (1127)
Q Consensus 597 ~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g 676 (1127)
.++..+.+. -.+....||..|+.++..++...+.- .+...+...+..+++ |+ .
T Consensus 203 ----~l~~~l~~l-~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~~~-----D~---------------~ 255 (588)
T d1b3ua_ 203 ----EIIPMFSNL-ASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAE-----DK---------------S 255 (588)
T ss_dssp ----THHHHHHHH-HTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHT-----CS---------------S
T ss_pred ----HHHHHHHHH-hcCCchhhHHHHHHHHHHhhccCCHH--HHHHHHHHHHHHhcc-----cc---------------c
Confidence 122222222 23555689999999999988766542 223333344444432 10 0
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHH
Q 035871 677 EKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIE 756 (1127)
Q Consensus 677 ~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie 756 (1127)
.+++..+++.|.++...... + .....++
T Consensus 256 ~~Vr~~~~~~l~~l~~~~~~-----------------------------------~----------------~~~~~l~- 283 (588)
T d1b3ua_ 256 WRVRYMVADKFTELQKAVGP-----------------------------------E----------------ITKTDLV- 283 (588)
T ss_dssp HHHHHHHHHTHHHHHHHHCH-----------------------------------H----------------HHHHTHH-
T ss_pred HHHHHHHHHhHHHHHHHhhh-----------------------------------h----------------hhhhhhh-
Confidence 14665666666554332100 0 0001112
Q ss_pred hhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhH-----HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccc
Q 035871 757 KHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKET-----QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVS 831 (1127)
Q Consensus 757 ~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~-----q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~ 831 (1127)
..+...++|+++.||..|+.+++.+.. .++.+. ...++.. +.....|.++.||.+++++++.+.. .++
T Consensus 284 ~~l~~ll~d~~~~vr~~a~~~l~~~~~----~l~~~~~~~~~~~~i~~~-l~~~~~d~~~~vr~~~~~~l~~~~~--~~~ 356 (588)
T d1b3ua_ 284 PAFQNLMKDCEAEVRAAASHKVKEFCE----NLSADCRENVIMSQILPC-IKELVSDANQHVKSALASVIMGLSP--ILG 356 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHH----TSCTTTHHHHHHHTHHHH-HHHHHTCSCHHHHHHHHTTGGGGHH--HHC
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHH----HHhhhhhhhhhHHHHHHH-HHHhhcCCChHHHHHHHHHHhhhhh--ccc
Confidence 255577899999999999999988532 222211 1234443 4467899999999999999988741 122
Q ss_pred cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhh
Q 035871 832 QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIK 910 (1127)
Q Consensus 832 ~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVR 910 (1127)
...+.+..++.+...+.|++..||..+..+++.+...+... .+.+.++..+.+ ..+|.+ +||
T Consensus 357 -~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~------------~~~~~ll~~l~~----~~~d~~~~~r 419 (588)
T d1b3ua_ 357 -KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR------------QLSQSLLPAIVE----LAEDAKWRVR 419 (588)
T ss_dssp -HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH------------HHHHHHHHHHHH----HHTCSSHHHH
T ss_pred -hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchh------------hhhhHHHHHHHH----HHhcccHHHH
Confidence 23345667788888899999999999999999988764211 223334444433 345555 899
Q ss_pred hhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCch-hHHHH
Q 035871 911 SNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWA-PSVFS 989 (1127)
Q Consensus 911 snAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa-~~v~~ 989 (1127)
.+++.+++.+.+.+..+.+ .+...+.+...+.+.+..||..|+.+||.+..+- ...|. ..+++
T Consensus 420 ~~~~~~l~~l~~~~~~~~~-----------~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~-----~~~~~~~~i~~ 483 (588)
T d1b3ua_ 420 LAIIEYMPLLAGQLGVEFF-----------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF-----GKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHHHHHHHCGGGC-----------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-----CHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHcChHhH-----------HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh-----CcHHHHHHHHH
Confidence 9999999999877655432 2556677888899999999999999999997542 12243 34566
Q ss_pred HHHHHHhcCCChHHHHHHHHHhcC
Q 035871 990 ILLLLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 990 ~Ll~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
.+.... .++|+.+|+.|+.+++.
T Consensus 484 ~l~~~~-~~~~~~~R~~~~~~l~~ 506 (588)
T d1b3ua_ 484 KVLAMS-GDPNYLHRMTTLFCINV 506 (588)
T ss_dssp HHHHTT-TCSCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHH
Confidence 666666 67999999999999873
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.3e-15 Score=178.34 Aligned_cols=267 Identities=13% Similarity=0.172 Sum_probs=169.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
+-..++++++.+|.+|+-|||.|.......+.. .-..++..+ +..++|+++.||.+|+++||.++.+-.-.....|..
T Consensus 400 l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~-~l~~li~~l-~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~ 477 (888)
T d1qbkb_ 400 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHL-IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 477 (888)
T ss_dssp HHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTT-THHHHHHHH-HHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTT
T ss_pred HHHhhccchhHHHHHHHHHhhhhhhhHHHHhcc-cchhhhHHH-HHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 334567888999999999999986544333322 122345544 477899999999999999999863221112234667
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccccc------------------------------------CCCC-
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDF------------------------------------AFKP- 881 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~------------------------------------~~~~- 881 (1127)
.+++.++..+.|++..||.+|+|||+++++........+ .+..
T Consensus 478 ~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~ 557 (888)
T d1qbkb_ 478 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP 557 (888)
T ss_dssp THHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccch
Confidence 888999999999999999999999999987532211000 0000
Q ss_pred -C----------------Ccc-------------------cccH-------H----------------------------
Q 035871 882 -S----------------IDS-------------------NANS-------H---------------------------- 890 (1127)
Q Consensus 882 -~----------------~~~-------------------~is~-------~---------------------------- 890 (1127)
+ .+. .+.+ .
T Consensus 558 ~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 637 (888)
T d1qbkb_ 558 EYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 637 (888)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHH
Confidence 0 000 0000 0
Q ss_pred -------HHHHHH-----------------HHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHH
Q 035871 891 -------LMASLT-----------------ESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIV 945 (1127)
Q Consensus 891 -------lL~~L~-----------------e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i 945 (1127)
++..++ ...+.+.+|.+ .||..|.-.+|.+....... -....+.++
T Consensus 638 ~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~---------~~~~l~~~~ 708 (888)
T d1qbkb_ 638 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH---------VKPCIADFM 708 (888)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG---------TGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHH
Confidence 000000 00111122333 46666666666665433321 123478889
Q ss_pred HHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCC-hHHHHHHHHHhcCCC--cccccCC
Q 035871 946 QALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSN-FKIRIQAAAALAVPS--SVSDYGK 1022 (1127)
Q Consensus 946 ~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~N-FKVRi~AA~AL~~p~--~R~~yG~ 1022 (1127)
+.|++.+.+.+..|+-|||+|+|.+-.+ +...-.++.+.+++.|+..+.+.+. -.|+-|+|.|||... .....+.
T Consensus 709 ~~l~~~L~~~~~~v~~~a~~~ig~ia~~--~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~ 786 (888)
T d1qbkb_ 709 PILGTNLNPEFISVCNNATWAIGEISIQ--MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAP 786 (888)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHH--TGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHh
Confidence 9999999999999999999999998643 1112346889999999999975332 339999999998332 1123344
Q ss_pred chHHHHHHHHHHHHHh
Q 035871 1023 SFSDVVQGLEHILENL 1038 (1127)
Q Consensus 1023 ~~~~V~~~L~~aLe~~ 1038 (1127)
+.+.+++.++.+|...
T Consensus 787 ~l~~~~~~~~~~l~~~ 802 (888)
T d1qbkb_ 787 MLQQFIRPWCTSLRNI 802 (888)
T ss_dssp GGGGTHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHhccC
Confidence 5666778888999764
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.2e-09 Score=132.68 Aligned_cols=502 Identities=15% Similarity=0.150 Sum_probs=280.6
Q ss_pred hhhhHHHHHHHHHHHHhhCCccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhh
Q 035871 390 SSKVRVAALVCLQDLCRADPKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQV 469 (1127)
Q Consensus 390 ~skVR~~AL~~L~al~k~~~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~ 469 (1127)
.-++|..|+.||.++++..+..+..++..++|.- ...+.|+.+.||..++.++..++..........
T Consensus 343 s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L-------------~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 409 (1207)
T d1u6gc_ 343 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPAL-------------ISRFKEREENVKADVFHAYLSLLKQTRPVQSWL 409 (1207)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHH-------------HSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------HHHhcCCchHHHHHHHHHHHHHHHhccchhhhh
Confidence 4589999999999999988877777776665432 224689999999999999999987644322221
Q ss_pred hhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhh
Q 035871 470 AEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEE 549 (1127)
Q Consensus 470 AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~ 549 (1127)
.... ...........+...+-.+-..+...+ .+++..+...+++++..++...|-. + .+.++.++..+...+.
T Consensus 410 ~~~~---~~~~~~~~~~~l~~~~~~i~~~l~~~l-~~~~~~~r~~~~~~l~~l~~~~~~~-l-~~~l~~~~~~i~~~l~- 482 (1207)
T d1u6gc_ 410 CDPD---AMEQGETPLTMLQSQVPNIVKALHKQM-KEKSVKTRQCCFNMLTELVNVLPGA-L-TQHIPVLVPGIIFSLN- 482 (1207)
T ss_dssp -----------CCCHHHHHHHHTTHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTT-T-GGGHHHHHHHHHHHTT-
T ss_pred hchH---HHHhhcchHHHHHHHhHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHcchH-H-HHhhHhhHHHHHHHHh-
Confidence 1100 001111112222333333334444444 4467778899999999999988743 2 2334455544433332
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhcCCChhHH--HHHHH----Hhhh---------------------cCCC--CCCCcc
Q 035871 550 GFPLKTDQTGLLVAAISCLTAALSTSPAPVQV--KQMFL----EEIS---------------------AGSV--EVDKRS 600 (1127)
Q Consensus 550 ~~~~~~d~~al~VaaL~cL~avls~~~~~~eV--~~~L~----~e~s---------------------sg~~--~~~~~s 600 (1127)
+......++..++.++..++....+..-. ...+. .... .... ......
T Consensus 483 ---~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~ 559 (1207)
T d1u6gc_ 483 ---DKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 559 (1207)
T ss_dssp ---CSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred ---cccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhH
Confidence 22222346778899999888765543210 00000 0000 0000 000111
Q ss_pred hhHHHHH----hh-hhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCcccc
Q 035871 601 GVLFTLL----QC-SERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFI 675 (1127)
Q Consensus 601 ~~L~~Ll----~~-~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~ 675 (1127)
..+..++ .. ...+....+|..|+.++..+..+.+.....++..+...+.+.++ .+
T Consensus 560 ~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~---~~----------------- 619 (1207)
T d1u6gc_ 560 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK---NE----------------- 619 (1207)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT---SS-----------------
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc---ch-----------------
Confidence 2232222 22 22344457899999999999888877777766655544444431 11
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHH
Q 035871 676 GEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMI 755 (1127)
Q Consensus 676 g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~ii 755 (1127)
.....+.+.+..+... .. ..+ . ..++..++
T Consensus 620 --~~r~~a~~~l~~i~~~---~~-------------------------------~~~-~-------------~~~l~~~~ 649 (1207)
T d1u6gc_ 620 --ITRLTTVKALTLIAGS---PL-------------------------------KID-L-------------RPVLGEGV 649 (1207)
T ss_dssp --SHHHHHHHHHHHHTTC---SS-------------------------------CCC-C-------------HHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHh---cc-------------------------------chh-H-------------HHHHHHHH
Confidence 1223344444332100 00 000 0 01223333
Q ss_pred HhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccc---
Q 035871 756 EKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVS--- 831 (1127)
Q Consensus 756 e~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~--- 831 (1127)
+ .+...+.+.+..+|.+++.||..+-...-..++......++. .+..++.|++..||..+...|+.++ .+|...
T Consensus 650 ~-~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~ 727 (1207)
T d1u6gc_ 650 P-ILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD-ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKI 727 (1207)
T ss_dssp H-HHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT-TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGT
T ss_pred H-HHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHH-hhccccccccHHHHHHHHHHHHHHHhhcchhhhhH
Confidence 3 355567788889999999999886544434444444455554 3456678888889988888888764 122100
Q ss_pred -----------------cc------hHH----------------------------------------HHHHHHHHHH--
Q 035871 832 -----------------QS------AEI----------------------------------------IDKFIHAVEI-- 846 (1127)
Q Consensus 832 -----------------~d------~~f----------------------------------------v~~ai~aLl~-- 846 (1127)
.. ..+ +..++..+..
T Consensus 728 ~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 807 (1207)
T d1u6gc_ 728 SGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807 (1207)
T ss_dssp TTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 00 000 0111111111
Q ss_pred -------------hc--CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhh
Q 035871 847 -------------NT--HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKS 911 (1127)
Q Consensus 847 -------------~l--~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRs 911 (1127)
.. .+....+|.-|.-+||+++...... ..+++...+++. ...++++||.
T Consensus 808 ~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~-------------~~~~l~~~l~~~---l~~~~~~vr~ 871 (1207)
T d1u6gc_ 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLS-------------GQLELKSVILEA---FSSPSEEVKS 871 (1207)
T ss_dssp CCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCC-------------SCTHHHHHHHHG---GGCSCHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccc-------------chHHHHHHHHHH---hCCCCHHHHH
Confidence 01 2455678888889999999874311 111222222221 1345558999
Q ss_pred hHHHHHhhhhhcccc------------CCC-------------CCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHH
Q 035871 912 NAVRGLGNLSRFVKY------------TSS-------------SHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRA 966 (1127)
Q Consensus 912 nAvRALGnLl~~l~~------------~~~-------------~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~A 966 (1127)
.|+.|||+++..... ++- ...-..+-..+.+.+++.|...+.+.+..||..++..
T Consensus 872 aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~ 951 (1207)
T d1u6gc_ 872 AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 951 (1207)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999987532111 000 0000001223567777778777888889999999999
Q ss_pred HHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 967 LSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 967 LGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
||.+..-. ...+++.|...+. +++..||..|+.|++
T Consensus 952 lg~L~~~~---------~~~~lp~L~~~l~-~~~~~~r~~ai~~l~ 987 (1207)
T d1u6gc_ 952 LGKLTLID---------PETLLPRLKGYLI-SGSSYARSSVVTAVK 987 (1207)
T ss_dssp HHHHHHSS---------GGGTHHHHTTTSS-SSCHHHHHHHHHHTG
T ss_pred HHHHHhcC---------HHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 99986321 1346888888885 688999999999996
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1e-09 Score=128.18 Aligned_cols=515 Identities=15% Similarity=0.175 Sum_probs=277.5
Q ss_pred hhhHHHHHHHHHHHHhhCCcccccccccc-----------ccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHh
Q 035871 391 SKVRVAALVCLQDLCRADPKSFTTQWTIL-----------LPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAML 459 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~~K~l~gyW~~l-----------lPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL 459 (1127)
..+|+.|+.+| ++.+..+|... +|..... .....|+.+ +.+|++++|..++.+++.+.
T Consensus 55 ~~~r~~A~i~l-------kn~i~~~~~~~~~~~~~~~~~~i~~~~~~---~ik~~ll~~-l~~~~~~vr~~~a~~i~~i~ 123 (861)
T d2bpta1 55 LEGRILAALTL-------KNELVSKDSVKTQQFAQRWITQVSPEAKN---QIKTNALTA-LVSIEPRIANAAAQLIAAIA 123 (861)
T ss_dssp HHHHHHHHHHH-------HTTTCCSSHHHHHHHHHHHHHHSCHHHHH---HHHHHHHHH-HTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHhhcccchhhhhHHhhhHhcCCHHHHH---HHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 56999999988 44555566433 2221100 012345544 46899999999999998774
Q ss_pred cCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCC-CCchHH
Q 035871 460 DGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMP-GELMPN 538 (1127)
Q Consensus 460 ~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~-~~Ll~~ 538 (1127)
.. +.++. . + . ++=..|+..++.++...+....++|+..++...+..--+ ..-+..
T Consensus 124 ~~---------~~p~~-~---w---p--------eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~ 179 (861)
T d2bpta1 124 DI---------ELPHG-A---W---P--------ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179 (861)
T ss_dssp HH---------HGGGT-C---C---H--------HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred HH---------hCCcC-c---h---H--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 21 11111 0 1 0 233345666677776667777899999988765543211 112233
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCch
Q 035871 539 LIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAI 618 (1127)
Q Consensus 539 vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~v 618 (1127)
++..+...+.. ...+ ..++.+++.++...+..-+...+... . ...++..+.+.. ++....+
T Consensus 180 il~~i~~~~~~---~~~~-~~v~~~a~~~l~~~~~~~~~~~~~~~-~-------------~~~~~~~l~~~~-~~~~~~~ 240 (861)
T d2bpta1 180 ILIAIVQGAQS---TETS-KAVRLAALNALADSLIFIKNNMEREG-E-------------RNYLMQVVCEAT-QAEDIEV 240 (861)
T ss_dssp HHHHHHHHHST---TCCC-HHHHHHHHHHHHHHGGGCHHHHTSHH-H-------------HHHHHHHHHHHH-TCSCHHH
T ss_pred HHHHHHHHHhc---ccCC-HHHHHHHHHHHHHHHHHHhHhHHhhh-h-------------hhHHHHhHHHHh-cCCCHHH
Confidence 33333333321 1112 34778899999887654322110000 0 001222222222 2344689
Q ss_pred HhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhccc
Q 035871 619 CFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFK 698 (1127)
Q Consensus 619 RlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~ 698 (1127)
|..+++++..++..||..+.+|...+. ..++..... + ..+.+...+...+..+.+......
T Consensus 241 ~~~~~~~l~~i~~~~~~~~~~~l~~~l---~~l~~~~~~-~---------------~~~~v~~~~~~~l~~l~~~~~~~~ 301 (861)
T d2bpta1 241 QAAAFGCLCKIMSKYYTFMKPYMEQAL---YALTIATMK-S---------------PNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHTH---HHHHHHHTT-C---------------SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhc-C---------------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877766432 222222111 1 012344444444443322111000
Q ss_pred CccccccccccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHc-------cCChhHH
Q 035871 699 GTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQ-------HISSMVR 771 (1127)
Q Consensus 699 g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~-------d~~~~VR 771 (1127)
... . +... .+....... ...-..+++. +...+. +.+..+|
T Consensus 302 ~~~--~--~~~~---------------~~~~~~~~~-------------~~~l~~i~~~-l~~~l~~~~~~~~~~~~~~~ 348 (861)
T d2bpta1 302 YEL--A--QFPQ---------------SPLQSYNFA-------------LSSIKDVVPN-LLNLLTRQNEDPEDDDWNVS 348 (861)
T ss_dssp HHH--H--HCTT---------------CSCCCCCHH-------------HHHHHHHHHH-HHHHTTCCCCC-CCCCCHHH
T ss_pred HHH--H--hhhh---------------hHHHHHHHH-------------HHHHHHHHHH-HHHHHHHhhccccchhHHHH
Confidence 000 0 0000 000000000 0000112221 112221 2235789
Q ss_pred HHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCC
Q 035871 772 TAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDP 851 (1127)
Q Consensus 772 aaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~ 851 (1127)
.++..|+..+.. .++.+.-..+.. .+.....++++.+|-+|+.++|.+.-...-..-..++...++.++..+.|+
T Consensus 349 ~~~~~~l~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~ 423 (861)
T d2bpta1 349 MSAGACLQLFAQ----NCGNHILEPVLE-FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ 423 (861)
T ss_dssp HHHHHHHHHHHH----HHGGGGHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHh----hcchhhhhhhcc-hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCc
Confidence 999999887532 233333333443 344567889999999999999998643322222456778889999999999
Q ss_pred CcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCC
Q 035871 852 LVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSH 931 (1127)
Q Consensus 852 ~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~ 931 (1127)
+..||..|.|+||++++.+..... ....+..+++..++...|+.+|+..++.++.+++..+......
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 490 (861)
T d2bpta1 424 SLQVKETTAWCIGRIADSVAESID------------PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPS- 490 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSC------------TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSC-
T ss_pred chhhhhHHHHHHHHHHHHhchhhh------------hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccc-
Confidence 999999999999999987654321 0112333444444556788899999999999887665543211
Q ss_pred CCCCCChhHHHHHHHHHHHhhc--cCCcc---------------------------------------------------
Q 035871 932 PASLGDSRWLERIVQALVSCVT--TGNVK--------------------------------------------------- 958 (1127)
Q Consensus 932 ~~~~g~~~~~E~~i~aLlk~l~--~~n~K--------------------------------------------------- 958 (1127)
+. .......+..|+.... +.+..
T Consensus 491 ~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 566 (861)
T d2bpta1 491 PI----YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp GG----GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred hh----hHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 00 0111222222222221 11122
Q ss_pred -----chhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCcccccCC----chHHHHH
Q 035871 959 -----VQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSSVSDYGK----SFSDVVQ 1029 (1127)
Q Consensus 959 -----VRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~R~~yG~----~~~~V~~ 1029 (1127)
++..++..++.++..- .....+..+.+++.++..+.+.+...||..+..+++.... .+|. +.+.++.
T Consensus 567 ~~~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~--~~~~~~~~~l~~i~p 642 (861)
T d2bpta1 567 QSLQELQSNILTVLAAVIRKS--PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA--SLGKGFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHH--HHGGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH--HhhHHHHHHHHHHhh
Confidence 3444444555444221 1112345678889999999888888999988888863322 2343 4455666
Q ss_pred HHHHHHHH
Q 035871 1030 GLEHILEN 1037 (1127)
Q Consensus 1030 ~L~~aLe~ 1037 (1127)
.|+.+|++
T Consensus 643 ~l~~~l~~ 650 (861)
T d2bpta1 643 YLLKALNQ 650 (861)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 66667654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1.2e-10 Score=136.09 Aligned_cols=529 Identities=14% Similarity=0.123 Sum_probs=273.9
Q ss_pred hhhHHHHHHHHHHHHhhC-CccccccccccccCCCCCCCCcCccchhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhh
Q 035871 391 SKVRVAALVCLQDLCRAD-PKSFTTQWTILLPTNDVLRPRKFEATLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQV 469 (1127)
Q Consensus 391 skVR~~AL~~L~al~k~~-~K~l~gyW~~llPd~~~~~~~~~~~tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~ 469 (1127)
.+||..+..++..+++.+ | .+.||.++|. |+..+..+....+|.+|+.++..+.+...+.+
T Consensus 109 ~~vr~~~a~~i~~i~~~~~p---~~~wpeli~~------------L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~--- 170 (861)
T d2bpta1 109 PRIANAAAQLIAAIADIELP---HGAWPELMKI------------MVDNTGAEQPENVKRASLLALGYMCESADPQS--- 170 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGG---GTCCHHHHHH------------HHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS---
T ss_pred HHHHHHHHHHHHHHHHHhCC---cCchHHHHHH------------HHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHH---
Confidence 369999999999999863 3 2478887754 44555555567899999999998876643322
Q ss_pred hhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhh
Q 035871 470 AEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEE 549 (1127)
Q Consensus 470 AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~ 549 (1127)
.++...+..++..+. -.....+.+..+...++||+..++...+.+--.......++..+...+.
T Consensus 171 ------------~~~~~~~~~il~~i~---~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 234 (861)
T d2bpta1 171 ------------QALVSSSNNILIAIV---QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ- 234 (861)
T ss_dssp ------------STTGGGHHHHHHHHH---HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-
T ss_pred ------------HHHHHHHHHHHHHHH---HHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc-
Confidence 111112222222221 1223456677888999999999998876432222333444444433332
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHhcCCCh--hHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHH
Q 035871 550 GFPLKTDQTGLLVAAISCLTAALSTSPAP--VQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALR 627 (1127)
Q Consensus 550 ~~~~~~d~~al~VaaL~cL~avls~~~~~--~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ 627 (1127)
+ .+ ..++..++.|+..++...+.. +.+.+ .+..+......+....+|.+++.++.
T Consensus 235 ---~-~~-~~~~~~~~~~l~~i~~~~~~~~~~~l~~------------------~l~~l~~~~~~~~~~~v~~~~~~~l~ 291 (861)
T d2bpta1 235 ---A-ED-IEVQAAAFGCLCKIMSKYYTFMKPYMEQ------------------ALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp ---C-SC-HHHHHHHHHHHHHHHHHHGGGCHHHHHH------------------THHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ---C-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1 12 237788999998887643321 11111 12222222233344578888888877
Q ss_pred HHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCcccccccc
Q 035871 628 AVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDK 707 (1127)
Q Consensus 628 ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~ 707 (1127)
.++......... .. .... . ...... -...+...+++.+...+.. .. ++..
T Consensus 292 ~l~~~~~~~~~~-----------~~-~~~~-~-----------~~~~~~-~~~~~l~~i~~~l~~~l~~-~~-~~~~--- 341 (861)
T d2bpta1 292 TICEEEIDIAYE-----------LA-QFPQ-S-----------PLQSYN-FALSSIKDVVPNLLNLLTR-QN-EDPE--- 341 (861)
T ss_dssp HHHHHHHHHHHH-----------HH-HCTT-C-----------SCCCCC-HHHHHHHHHHHHHHHHTTC-CC-CC-C---
T ss_pred HHHHHHHHHHHH-----------HH-hhhh-h-----------HHHHHH-HHHHHHHHHHHHHHHHHHH-hh-cccc---
Confidence 765443221110 00 0000 0 000000 0000111111111111100 00 0000
Q ss_pred ccCCCCcchhhhhhccCCCCcccccchhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHh
Q 035871 708 LLDNPFTSDCIRIKNISSAPLYEQESSEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFF 787 (1127)
Q Consensus 708 l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~ 787 (1127)
.+ . ... .. ....+-... ....+......++ ..+...+.+++...|.+|+.+++.+......
T Consensus 342 -~~-~-~~~-------------~~-~~~~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~ 402 (861)
T d2bpta1 342 -DD-D-WNV-------------SM-SAGACLQLF-AQNCGNHILEPVL-EFVEQNITADNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp -CC-C-CHH-------------HH-HHHHHHHHH-HHHHGGGGHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred -ch-h-HHH-------------HH-HHHHHHHHH-Hhhcchhhhhhhc-chhhhhhhhHHHHHHHHHHHHHHHHHhhcch
Confidence 00 0 000 00 000000000 0000111111111 2334455677889999999999998653211
Q ss_pred hcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhh
Q 035871 788 SLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC-FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANI 866 (1127)
Q Consensus 788 ~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~-~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL 866 (1127)
..-...-..++.. +...+.|+++.||.+|++++|.++. ++....+..+....+..+..... .+..|+..++|++.++
T Consensus 403 ~~~~~~l~~~l~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~~~l 480 (861)
T d2bpta1 403 VQRTYYVHQALPS-ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINL 480 (861)
T ss_dssp HHHHHHHHHHHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-SCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccc-cChHHHHHHHHHHHHH
Confidence 1111122335553 4577899999999999999999872 23322223334566666666554 4678999999999999
Q ss_pred hhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCC------------------
Q 035871 867 CDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTS------------------ 928 (1127)
Q Consensus 867 ~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~------------------ 928 (1127)
+..+....... .. ......+..++.... .......+|..+..+++.+.......-
T Consensus 481 ~~~~~~~~~~~-~~-----~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~ 553 (861)
T d2bpta1 481 VEQLAEATPSP-IY-----NFYPALVDGLIGAAN-RIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQT 553 (861)
T ss_dssp HHHHSSSSSCG-GG-----GGHHHHHHHHHHHHT-CSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccch-hh-----HHHhhHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98765432110 00 111122223322110 111222567777777766654433210
Q ss_pred CC---CCC--------------------------CCCChhHHHHHHHHHHHhhcc-CCccchhhHHHHHHhhhccccccc
Q 035871 929 SS---HPA--------------------------SLGDSRWLERIVQALVSCVTT-GNVKVQWNVCRALSNLFLNETINL 978 (1127)
Q Consensus 929 ~~---~~~--------------------------~~g~~~~~E~~i~aLlk~l~~-~n~KVRWNAc~ALGnl~~n~~i~~ 978 (1127)
.. +.. ........+.+++.+++.+.+ .+..||=.++.++|.+... +..
T Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~--~~~ 631 (861)
T d2bpta1 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS--LGK 631 (861)
T ss_dssp TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH--HGG
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH--hhH
Confidence 00 000 000112356677777777754 4577888899999887643 111
Q ss_pred cCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCC--cccccCCchHHHHHHHHHHHHH
Q 035871 979 EDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPS--SVSDYGKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 979 ~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~--~R~~yG~~~~~V~~~L~~aLe~ 1037 (1127)
.-.++.+.+++.|+..+. +.+.+||..|+.+++... ....+..+.+++...|+..|++
T Consensus 632 ~~~~~l~~i~p~l~~~l~-~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~ 691 (861)
T d2bpta1 632 GFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp GGHHHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHhC-CCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCC
Confidence 223567889999999995 578899999999987432 1223333455666666666654
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.6e-12 Score=131.39 Aligned_cols=208 Identities=16% Similarity=0.212 Sum_probs=141.5
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|-.+++|+++.||..|+.+|+.++... ......+..++..+++|+++.||.+|+.+||.+.. .+.....
T Consensus 55 l~~~l~d~~~~vr~~a~~aL~~l~~~~------~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~~ 123 (276)
T d1oyza_ 55 AIEFCSDKNYIRRDIGAFILGQIKICK------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCK-----KNPIYSP 123 (276)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHSCCCT------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-----HCGGGHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcccc------ccccchHHHHHHHHhcCCChhHHHHHHHHHHHHcc-----ccchhhH
Confidence 345788999999999999999987422 11222333344456799999999999999999852 2223345
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhccc-ccCCCCCCcccccH---HHH-------HHHHHHHHhhccCCc
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCID-DFAFKPSIDSNANS---HLM-------ASLTESALNLTKDGD 907 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~-~~~~~~~~~~~is~---~lL-------~~L~e~aL~a~~D~D 907 (1127)
..++.+...+.|++..||..|+++||++++....... ...... ...... ..+ .......+....|.+
T Consensus 124 ~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (276)
T d1oyza_ 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDP--NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKN 201 (276)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhcccc--cchhhhhHHHHHHhhhccccccchhhhhhhhhhh
Confidence 6778888889999999999999999999874321100 000000 000000 000 011222333344444
Q ss_pred -hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhH
Q 035871 908 -KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPS 986 (1127)
Q Consensus 908 -KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~ 986 (1127)
.||..++.++|.+. + +.+++.|++.+.+ ..||++|+.|||.++.. .
T Consensus 202 ~~~~~~~~~al~~~~---------------~----~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~~------------~ 248 (276)
T d1oyza_ 202 EEVRIEAIIGLSYRK---------------D----KRVLSVLCDELKK--NTVYDDIIEAAGELGDK------------T 248 (276)
T ss_dssp HHHHHHHHHHHHHTT---------------C----GGGHHHHHHHHTS--SSCCHHHHHHHHHHCCG------------G
T ss_pred hhhhhhhccccchhh---------------h----hhhHHHHHHHhCC--hHHHHHHHHHHHHcCCH------------H
Confidence 79999999999883 1 3467788888875 46999999999999843 3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 987 VFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 987 v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+++.|..++.+.++..||..|..+|.
T Consensus 249 ~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 249 LLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp GHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 77899999999889999999999996
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.8e-11 Score=126.09 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=141.6
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|...|+|++|.||..|+.+|+.+|++. .+. ++..+++|+++.||..|+++||.+...... .
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~~~~~-----------~~~-~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~---~--- 84 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLRGGQD-----------AVR-LAIEFCSDKNYIRRDIGAFILGQIKICKKC---E--- 84 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCHH-----------HHH-HHHHHHTCSSHHHHHHHHHHHHHSCCCTTT---H---
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCCHh-----------HHH-HHHHHHcCCCHHHHHHHHHHHHHhcccccc---c---
Confidence 4557899999999999999999998642 333 334778999999999999999988432111 1
Q ss_pred HHHHHHHHH-hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHH
Q 035871 838 DKFIHAVEI-NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVR 915 (1127)
Q Consensus 838 ~~ai~aLl~-~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvR 915 (1127)
....+.++. .++|++..||..|.++||++++... ...+.++.. ......|.+ .||..|++
T Consensus 85 ~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--------------~~~~~~~~~----l~~~~~d~~~~vr~~a~~ 146 (276)
T d1oyza_ 85 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP--------------IYSPKIVEQ----SQITAFDKSTNVRRATAF 146 (276)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--------------GGHHHHHHH----HHHHTTCSCHHHHHHHHH
T ss_pred cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc--------------hhhHHHHHH----HHHHhcCcchHHHHHHHH
Confidence 122233332 4689999999999999999997521 111222333 333456655 79999999
Q ss_pred HHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHH
Q 035871 916 GLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLL 995 (1127)
Q Consensus 916 ALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll 995 (1127)
++|.+. + +..+..++..+.+.+..+|+.+..+++++.... ....+.++..+
T Consensus 147 ~l~~~~---------------~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 197 (276)
T d1oyza_ 147 AISVIN---------------D----KATIPLLINLLKDPNGDVRNWAAFAININKYDN----------SDIRDCFVEML 197 (276)
T ss_dssp HHHTC----------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----------HHHHHHHHHHT
T ss_pred HHhhcc---------------h----HHHHHHHHHhcccccchhhhhHHHHHHhhhccc----------cccchhhhhhh
Confidence 999874 1 223456667777788888888888888776543 34556666666
Q ss_pred hcCCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHH
Q 035871 996 RDSSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILE 1036 (1127)
Q Consensus 996 ~~~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe 1036 (1127)
.+++..||..++.||+. .|.. .++..|+++|+
T Consensus 198 -~~~~~~~~~~~~~al~~------~~~~--~~~~~L~~~l~ 229 (276)
T d1oyza_ 198 -QDKNEEVRIEAIIGLSY------RKDK--RVLSVLCDELK 229 (276)
T ss_dssp -TCSCHHHHHHHHHHHHH------TTCG--GGHHHHHHHHT
T ss_pred -hhhhhhhhhhhccccch------hhhh--hhHHHHHHHhC
Confidence 56888888888888873 3432 45666666665
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=5.2e-09 Score=122.95 Aligned_cols=274 Identities=16% Similarity=0.150 Sum_probs=162.7
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhh-cccccccchHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEII 837 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv 837 (1127)
+...+.+++...|.+++-+++.+........-...-..++.. +...+.|+++.||.+|++++|.++ .+|.......++
T Consensus 371 i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 449 (876)
T d1qgra_ 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT-LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH-HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHh
Confidence 445566778899999999999875432111112223344553 446779999999999999999997 344433444566
Q ss_pred HHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccC-CCCCCcccccHHHHHHHHHHHHhhcc----CCchhhhh
Q 035871 838 DKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFA-FKPSIDSNANSHLMASLTESALNLTK----DGDKIKSN 912 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~-~~~~~~~~is~~lL~~L~e~aL~a~~----D~DKVRsn 912 (1127)
...++.+...+.| +..|+.+++|++.++++.......... ..+.....+.+ .+..+++.++...+ +...+|..
T Consensus 450 ~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~~~l~~~~~~~~~~~~~~~~~ 527 (876)
T d1qgra_ 450 APLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS-SFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT-THHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred hhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHhhccccHhHHHH
Confidence 7788888877755 789999999999999987543221000 00000111111 12233333333333 23368888
Q ss_pred HHHHHhhhhhccccCCC------------------C--CCC-CC------------------------CC---hhHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSS------------------S--HPA-SL------------------------GD---SRWLERI 944 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~------------------~--~~~-~~------------------------g~---~~~~E~~ 944 (1127)
+.++++.+......+.. . ... .. +. ....+.+
T Consensus 528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i 607 (876)
T d1qgra_ 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 88888887655433210 0 000 00 00 0012344
Q ss_pred HHHHHHhhc--cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhcCCCc--cccc
Q 035871 945 VQALVSCVT--TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPSS--VSDY 1020 (1127)
Q Consensus 945 i~aLlk~l~--~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~~p~~--R~~y 1020 (1127)
++.+++.+. .++..|+=.+..++|.+... +.....+..+.+++.|+..+.+..+..||..|...++.... ...+
T Consensus 608 ~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~--~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 685 (876)
T d1qgra_ 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEV--LGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI 685 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHH--HGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHH--cchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhh
Confidence 455555543 35667888888888887632 12223456788999999999998889999999988863321 1223
Q ss_pred CCchHHHHHHHHHHHHH
Q 035871 1021 GKSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1021 G~~~~~V~~~L~~aLe~ 1037 (1127)
..+..++...++..|++
T Consensus 686 ~~~~~~i~~~l~~~l~~ 702 (876)
T d1qgra_ 686 IPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHhCC
Confidence 33445666666666653
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=3.6e-08 Score=115.70 Aligned_cols=253 Identities=19% Similarity=0.209 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEIN 847 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~ 847 (1127)
..+|.+|.+|+..+... ++.+-...++. .+...+.+.++.+|.+++.++|.+...........++...++.+...
T Consensus 342 ~~~~~~a~~~l~~l~~~----~~~~~~~~~~~-~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 416 (876)
T d1qgra_ 342 WNPCKAAGVCLMLLATC----CEDDIVPHVLP-FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (876)
T ss_dssp CCHHHHHHHHHHHHHHH----HGGGGHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH----hhhhhhhhhHH-HHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 56999999999876532 34444455555 45567789999999999999999864433333355677888999999
Q ss_pred cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccC
Q 035871 848 THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYT 927 (1127)
Q Consensus 848 l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~ 927 (1127)
+.|++..||..|+|++|.+++.+..... ....+..+++..+...+|+.+|+.+++.+++++.......
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~------------~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~ 484 (876)
T d1qgra_ 417 MKDPSVVVRDTAAWTVGRICELLPEAAI------------NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEA 484 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTS------------STTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCccHHHHHHHHHHHHHHHHcchhhh------------hHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543211 1122444555556667888899999999999987544321
Q ss_pred C-CC----CCCCCCChhHHHHHHHHHHHhhcc---CCccchhhHHHHHHhhhcccccc----------------------
Q 035871 928 S-SS----HPASLGDSRWLERIVQALVSCVTT---GNVKVQWNVCRALSNLFLNETIN---------------------- 977 (1127)
Q Consensus 928 ~-~~----~~~~~g~~~~~E~~i~aLlk~l~~---~n~KVRWNAc~ALGnl~~n~~i~---------------------- 977 (1127)
. .. ......-....+.++..|++.+.. .+..+|..|..+++.+..+..-.
T Consensus 485 ~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 564 (876)
T d1qgra_ 485 ADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM 564 (876)
T ss_dssp TSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 00 000001112356666666666643 23456666666665554321100
Q ss_pred ---------------------------------ccCCCchhHHHHHHHHHHhc-CCChHHHHHHHHHhcCCC--cccccC
Q 035871 978 ---------------------------------LEDMDWAPSVFSILLLLLRD-SSNFKIRIQAAAALAVPS--SVSDYG 1021 (1127)
Q Consensus 978 ---------------------------------~~~~~wa~~v~~~Ll~ll~~-~~NFKVRi~AA~AL~~p~--~R~~yG 1021 (1127)
....+..+.+++.+...+.. ..+..||..+..+++... ....+.
T Consensus 565 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 644 (876)
T d1qgra_ 565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644 (876)
T ss_dssp TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhH
Confidence 00113445566666666643 245568888888876322 122344
Q ss_pred CchHHHHHHHHHHHHH
Q 035871 1022 KSFSDVVQGLEHILEN 1037 (1127)
Q Consensus 1022 ~~~~~V~~~L~~aLe~ 1037 (1127)
.+++.++..++.+|++
T Consensus 645 ~~l~~ii~~l~~~l~~ 660 (876)
T d1qgra_ 645 KYMEAFKPFLGIGLKN 660 (876)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4677888888888876
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=4.8e-10 Score=122.65 Aligned_cols=401 Identities=15% Similarity=0.122 Sum_probs=218.5
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhHhcccCCCC----CCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhc
Q 035871 499 IIYLIQRETHDRLLASLFKILMPLISCTPYSRM----PGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALST 574 (1127)
Q Consensus 499 Ll~aL~~E~~~~vLtqlLKcLa~LVq~TPY~RL----~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~ 574 (1127)
|+..|..+ +.....++++++..+++.-+-... ..|.+|.+++.+ . +.+...++..+..+|..+.+.
T Consensus 18 lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL----~-----~~~~~~v~~~a~~~L~~la~~ 87 (434)
T d1q1sc_ 18 IVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----G-----KTDCSPIQFESAWALTNIASG 87 (434)
T ss_dssp HHHHHTSS-CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHT----T-----CGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHH----c-----cCCCHHHHHHHHHHHHHHhcC
Confidence 45677776 667888889999888765443322 256777777643 1 112223666777888877543
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHH-HHHHHHHHHHH
Q 035871 575 SPAPVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQ-QVSTIVFKILK 653 (1127)
Q Consensus 575 ~~~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~-~l~~vl~~~L~ 653 (1127)
.+ .....+ . +.|.+..++++... ....++..|+.+|..++...+........ .....+..++.
T Consensus 88 ~~--~~~~~i-~------------~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~ 151 (434)
T d1q1sc_ 88 TS--EQTKAV-V------------DGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151 (434)
T ss_dssp CH--HHHHHH-H------------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred Ch--hhhhHh-h------------hccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHH
Confidence 32 111111 1 12345555555542 34678899999999999877764432211 11122233321
Q ss_pred hhCCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccc
Q 035871 654 AASPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQES 733 (1127)
Q Consensus 654 ~~~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~ 733 (1127)
..+ ........+..+...+..+.+ +.. +...
T Consensus 152 ---~~~------------~~~~~~~~~~~~~~~l~~~~~------~~~-------------------------~~~~--- 182 (434)
T d1q1sc_ 152 ---VPD------------LSTLACGYLRNLTWTLSNLCR------NKN-------------------------PAPP--- 182 (434)
T ss_dssp ---SSC------------GGGSCHHHHHHHHHHHHHHTC------CCT-------------------------TCCC---
T ss_pred ---hcc------------cccchHHHHHHHHHHHHHHhh------ccc-------------------------ccch---
Confidence 111 000000111111122221100 000 0000
Q ss_pred hhhhhhhhhhhhcchhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhH
Q 035871 734 SEDIKESAKAFQSGSEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASV 813 (1127)
Q Consensus 734 ~~~~~~~~~~~~l~~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~V 813 (1127)
...=..++. .|...+.+.++.++..++.||+++.....+..+.-....++..+ ..+++++++.|
T Consensus 183 --------------~~~~~~~l~-~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L-v~ll~~~~~~~ 246 (434)
T d1q1sc_ 183 --------------LDAVEQILP-TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL-VKLLGATELPI 246 (434)
T ss_dssp --------------HHHHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH-HHHHTCSCHHH
T ss_pred --------------hhhhhhHHH-HHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhc-ccccccchhhh
Confidence 000012222 34456678889999999999999753321111110011123323 35678899999
Q ss_pred HHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHH
Q 035871 814 RSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMA 893 (1127)
Q Consensus 814 RaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~ 893 (1127)
+..|+++|+.++....-.....+-...++.+...+++++..||..|+|+|+|++..-...... ......+.
T Consensus 247 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---------i~~~~~i~ 317 (434)
T d1q1sc_ 247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ---------VVNHGLVP 317 (434)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH---------HHHTTCHH
T ss_pred hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHH---------HhhhhhHH
Confidence 999999999986411100000111233455677789999999999999999998631111000 00011233
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcc
Q 035871 894 SLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLN 973 (1127)
Q Consensus 894 ~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n 973 (1127)
.+++.+ ..++.+||.+|+.+|+|+....+.+.. ....-.++++.|++.++.++.+++-.+..+|.++++-
T Consensus 318 ~li~~l---~~~~~~v~~~a~~~l~nl~~~~~~~~~-------~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~ 387 (434)
T d1q1sc_ 318 FLVGVL---SKADFKTQKEAAWAITNYTSGGTVEQI-------VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 387 (434)
T ss_dssp HHHHHH---HSSCHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hccChHHHHHHHHHHHHHHhcCCHHHH-------HHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 444432 245568999999999999744332210 0001123578899999999999999999999999752
Q ss_pred ccccccCCCchhHH------HHHHHHHHhcCCChHHHHHHHHHh
Q 035871 974 ETINLEDMDWAPSV------FSILLLLLRDSSNFKIRIQAAAAL 1011 (1127)
Q Consensus 974 ~~i~~~~~~wa~~v------~~~Ll~ll~~~~NFKVRi~AA~AL 1011 (1127)
..- .+........ ++ .+.-|++++|-.||..|..-|
T Consensus 388 ~~~-~~~~~~~~~~~~~~~~~~-~i~~L~~~~n~~i~~~a~~il 429 (434)
T d1q1sc_ 388 AEK-LGETEKLSIMIEECGGLD-KIEALQRHENESVYKASLNLI 429 (434)
T ss_dssp HHT-TTCHHHHHHHHHHTTSHH-HHHHHHTCSSHHHHHHHHHHH
T ss_pred HHh-cCCcHHHHHHHHHcCCHH-HHHHHHcCCCHHHHHHHHHHH
Confidence 110 0011111111 22 345678899999999888766
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=9.9e-09 Score=126.74 Aligned_cols=481 Identities=12% Similarity=0.105 Sum_probs=266.6
Q ss_pred chhhhhhcCCChhHHHHHHHHHHHHhcCCchhhhhhhhhccccCCcccccchHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 035871 434 TLMTCLLFDPCLKARMASASTLAAMLDGPSTVFLQVAEYKESIKCGSFMPLSTSYGHIIMQLHNGIIYLIQRETHDRLLA 513 (1127)
Q Consensus 434 tLlt~iL~Dps~KvR~aA~~~LsaLL~gsk~~llq~AE~~es~~~~SFTsfS~tLg~~l~eLHr~Ll~aL~~E~~~~vLt 513 (1127)
+|+.- +.||++..|..|++-|...|..... +..++ ....+-..|+.+|.+ +++.|..
T Consensus 7 ~ll~k-~~~~D~d~R~ma~~dl~~~l~~~~~---~~~~~------------------~~~~i~~~ll~~L~D-~~~~Vq~ 63 (1207)
T d1u6gc_ 7 NLLEK-MTSSDKDFRFMATNDLMTELQKDSI---KLDDD------------------SERKVVKMILKLLED-KNGEVQN 63 (1207)
T ss_dssp HHHHH-TTCSSHHHHHHHHHHHHHHTSSSCC---SCCTT------------------HHHHHHHHHHHHTTC-SSHHHHH
T ss_pred HHHHh-cCCCCHhHHHHHHHHHHHHHhhccc---ccChH------------------HHHHHHHHHHHHhCC-CCHHHHH
Confidence 34554 5899999999999988888865321 21111 223566778888876 6788999
Q ss_pred HHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCCChhHHH---HHHHHhhh
Q 035871 514 SLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSPAPVQVK---QMFLEEIS 590 (1127)
Q Consensus 514 qlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~~~~eV~---~~L~~e~s 590 (1127)
+++||++.|+.. ++...++.++..+...+.. .+.. .+-.+-.+|..++..-+....-. ..+.
T Consensus 64 ~A~k~l~~l~~~-----~~~~~~~~l~~~L~~~l~~----~~~~--~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~---- 128 (1207)
T d1u6gc_ 64 LAVKCLGPLVSK-----VKEYQVETIVDTLCTNMLS----DKEQ--LRDISSIGLKTVIGELPPASSGSALAANVC---- 128 (1207)
T ss_dssp HHHHHHHHHHTT-----SCHHHHHHHHHHHHHHTTC----SSSH--HHHHHHHHHHHHHHHCC-----CCTHHHHH----
T ss_pred HHHHHHHHHHHh-----CcHhhHHHHHHHHHHHhcC----Cchh--hhHHHHHHHHHHHHhcccccccchhHHHHH----
Confidence 999999999864 4455566666665554432 2222 34455566777665444322100 0000
Q ss_pred cCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHHHHHHHHhhCCCCcccccCCCCCC
Q 035871 591 AGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTIVFKILKAASPEVPAKAWKGHVGN 670 (1127)
Q Consensus 591 sg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~vl~~~L~~~~~~~~~~~~~g~~~~ 670 (1127)
..++..+...........+|.||+.+|..++++++..+.++...+...+...+...
T Consensus 129 ---------~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~--------------- 184 (1207)
T d1u6gc_ 129 ---------KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP--------------- 184 (1207)
T ss_dssp ---------HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS---------------
T ss_pred ---------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCC---------------
Confidence 01223333444444556899999999999999999888877765554444333211
Q ss_pred CccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchhhhh---hhhhhhhcc
Q 035871 671 TAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSEDIK---ESAKAFQSG 747 (1127)
Q Consensus 671 ~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~l~ 747 (1127)
...++..|++.|..+. .+.+..... +++.+++....-...+.......+-+. ...+ ....
T Consensus 185 -----~~~vR~~A~~~l~~l~----~~~~~~~~~-------~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~-~~~~ 247 (1207)
T d1u6gc_ 185 -----RLAVRKRTIIALGHLV----MSCGNIVFV-------DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-HRIG 247 (1207)
T ss_dssp -----SHHHHHHHHHHHHHHT----TTC----CT-------THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-GGGT
T ss_pred -----CHHHHHHHHHHHHHHH----HHCCHHHHH-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc-hhhH
Confidence 0134444555544332 222221111 122233222111111111111000000 0000 0000
Q ss_pred hhhhHHHHHhhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHH---HHHHHHH----------------------
Q 035871 748 SEQWSEMIEKHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQE---FIISSLI---------------------- 802 (1127)
Q Consensus 748 ~~~W~~iie~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~---~~i~~Ll---------------------- 802 (1127)
.+-..++. .+...+++++..+|..++.++..+.... |.+... .++..++
T Consensus 248 -~~l~~i~~-~l~~~l~~~~~~~r~~al~~l~~l~~~~----~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~ 321 (1207)
T d1u6gc_ 248 -EYLEKIIP-LVVKFCNVDDDELREYCIQAFESFVRRC----PKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 321 (1207)
T ss_dssp -TSCTTHHH-HHHHHHSSCCTTTHHHHHHHHHHHHHCT----TCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred -HHHHHHHH-HHHHHhcCccHHHHHHHHHHHHHHHHhC----hhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhh
Confidence 11112222 2335567778899999999988754321 111111 1111110
Q ss_pred --------------hhhccCCCHhHHHHHHHHHhhhh-cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhh
Q 035871 803 --------------DSALHDDVASVRSAACRAIGVIS-CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANIC 867 (1127)
Q Consensus 803 --------------l~~~~De~~~VRaAA~RALGvlv-~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~ 867 (1127)
..-..|..+.||.+|++.|+.++ ..|... ..+++.+++.+...+.|++.+||..+.-+++.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l--~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~ 399 (1207)
T d1u6gc_ 322 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML--PEFYKTVSPALISRFKEREENVKADVFHAYLSLL 399 (1207)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTH--HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred hhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 11134566789999999999876 334322 3456777889999999999999999999999988
Q ss_pred hhhhhcccccCCCCCCcc-ccc----HHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHH
Q 035871 868 DSIRHCIDDFAFKPSIDS-NAN----SHLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWL 941 (1127)
Q Consensus 868 d~L~~~~~~~~~~~~~~~-~is----~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~ 941 (1127)
.................. ... .+.+..+++...+..++.. ++|..+...++.+...+...- ....
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l---------~~~l 470 (1207)
T d1u6gc_ 400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL---------TQHI 470 (1207)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT---------GGGH
T ss_pred HhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHH---------HHhh
Confidence 754321110000000000 000 1122334555555555544 899999999999986655321 2346
Q ss_pred HHHHHHHHHhhccCC--ccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 942 ERIVQALVSCVTTGN--VKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 942 E~~i~aLlk~l~~~n--~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
...++.+++.+.+.+ ..+|-.|+..++.++.+..-. .-.+....+.+.++..+ ++++++||..|..+++
T Consensus 471 ~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~~l~~~~~~~~-~~~~~~i~~~al~~~~ 541 (1207)
T d1u6gc_ 471 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACV-GDPFYKITSEALLVTQ 541 (1207)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHH-TCSSHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHH-HHHHHHHhhhhhHHHHH-ccccHHHHHHHHHHHH
Confidence 778888888887644 568899999999988653211 01123455677778877 5689999999887764
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.05 E-value=5.8e-11 Score=109.53 Aligned_cols=108 Identities=23% Similarity=0.171 Sum_probs=87.4
Q ss_pred cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhhHHHHHhhhhhcccc
Q 035871 848 THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSNAVRGLGNLSRFVKY 926 (1127)
Q Consensus 848 l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsnAvRALGnLl~~l~~ 926 (1127)
|.|++..||..|+|+||++++. . +..|++ +.+ ++..||.+|+++||++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~~----------------~-----~~~L~~----~l~d~~~~vR~~a~~~L~~~~----- 50 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGDE----------------A-----FEPLLE----SLSNEDWRIRGAAAWIIGNFQ----- 50 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSST----------------T-----HHHHHH----GGGCSCHHHHHHHHHHHGGGC-----
T ss_pred CCCcCHHHHHHHHHHHHHhCHH----------------H-----HHHHHH----HHcCCCHHHHHHHHHHHHhcc-----
Confidence 5799999999999999988642 1 222332 234 44489999999999983
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHH
Q 035871 927 TSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQ 1006 (1127)
Q Consensus 927 ~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~ 1006 (1127)
.+.+++.|++++++.+..||++|+.|||+++. +.+.+.|..++ +++|..||..
T Consensus 51 --------------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~------------~~~~~~L~~ll-~d~~~~vr~~ 103 (111)
T d1te4a_ 51 --------------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ERVRAAMEKLA-ETGTGFARKV 103 (111)
T ss_dssp --------------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------HHHHHHHHHHT-TSCCTHHHHH
T ss_pred --------------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc------------cchHHHHHHHH-cCCCHHHHHH
Confidence 25688899999999999999999999999874 45788888888 5688999999
Q ss_pred HHHHhc
Q 035871 1007 AAAALA 1012 (1127)
Q Consensus 1007 AA~AL~ 1012 (1127)
|+.||.
T Consensus 104 A~~aL~ 109 (111)
T d1te4a_ 104 AVNYLE 109 (111)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 999996
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.5e-07 Score=101.62 Aligned_cols=210 Identities=12% Similarity=0.071 Sum_probs=129.4
Q ss_pred hhHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhc----------
Q 035871 757 KHMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISC---------- 826 (1127)
Q Consensus 757 ~~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~---------- 826 (1127)
..++..++++++.+|..+++||+.|....+..+..--...+. .++....++++..||..|+..++.++.
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 297 (458)
T d1ibrb_ 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF-AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 297 (458)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHH-HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466778889999999999999999765443333211111111 123355688899999999998887631
Q ss_pred -------cccccc---chHHHHHHHHHHHHh-------cCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccH
Q 035871 827 -------FPQVSQ---SAEIIDKFIHAVEIN-------THDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANS 889 (1127)
Q Consensus 827 -------~p~L~~---d~~fv~~ai~aLl~~-------l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~ 889 (1127)
.+.... .....+...+.+... ..|.+..||..|+.+++.++..... .+-+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-------------~~~~ 364 (458)
T d1ibrb_ 298 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVP 364 (458)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-------------THHH
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH-------------hhhh
Confidence 001110 011223333444433 2466678999999999998876431 1222
Q ss_pred HHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHH
Q 035871 890 HLMASLTESALNLTKDGD-KIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALS 968 (1127)
Q Consensus 890 ~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALG 968 (1127)
. +++......++.+ ++|..|+.+||.++.....+.+. .....+++.|+..+++.+..||++||++||
T Consensus 365 ~----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~--------~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~ 432 (458)
T d1ibrb_ 365 H----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PLVIQAMPTLIELMKDPSVVVRDTAAWTVG 432 (458)
T ss_dssp H----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC--------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred H----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2 3333333345555 89999999999997544332211 124568899999999999999999999999
Q ss_pred hhhccccccccCCCchhHHHHHHHHHHh
Q 035871 969 NLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 969 nl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
++... ++. ..--...++.|+..|.
T Consensus 433 ~i~~~--~~~--~~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 433 RICEL--LPE--AAINDVYLAPLLQCLI 456 (458)
T ss_dssp HHHHH--GGG--GCCSTTTHHHHHHHHH
T ss_pred HHHHH--hhc--ccchhhHHHHHHHHHh
Confidence 98632 111 1111335666666553
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.4e-08 Score=122.94 Aligned_cols=111 Identities=22% Similarity=0.384 Sum_probs=82.6
Q ss_pred HHhhhccCCCHhHHHHHHHHHhhhh--cccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccC
Q 035871 801 LIDSALHDDVASVRSAACRAIGVIS--CFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFA 878 (1127)
Q Consensus 801 Lll~~~~De~~~VRaAA~RALGvlv--~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~ 878 (1127)
+++.+++|.++.||.+|..++|.++ +.+.+ ..|++.+++.++..++|+...|+.+|+|++|.|+..+....
T Consensus 669 ~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~---~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~---- 741 (888)
T d1qbkb_ 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHV---KPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM---- 741 (888)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT---GGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGG----
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHh----
Confidence 4557789999999999999999886 33333 34678889999999999999999999999999998765432
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccc
Q 035871 879 FKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 879 ~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~ 925 (1127)
.+ .-+.++..|++.. +-.+.++.|+.|++-|||.|+...+
T Consensus 742 -~p-----y~~~il~~L~~il-~~~~~~~~v~~n~~~~lgrl~~~~p 781 (888)
T d1qbkb_ 742 -QP-----YIPMVLHQLVEII-NRPNTPKTLLENTAITIGRLGYVCP 781 (888)
T ss_dssp -GG-----GSHHHHHHHHHHH-TCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred -hh-----hHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHHHCH
Confidence 22 2234555565542 2223344699999999999976544
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.3e-08 Score=106.89 Aligned_cols=295 Identities=14% Similarity=0.183 Sum_probs=162.0
Q ss_pred HHHHHHhc-ccchHHHHHHHHHHHHhHhcccCCCCCCCchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhcCC
Q 035871 498 GIIYLIQR-ETHDRLLASLFKILMPLISCTPYSRMPGELMPNLIISLRARIEEGFPLKTDQTGLLVAAISCLTAALSTSP 576 (1127)
Q Consensus 498 ~Ll~aL~~-E~~~~vLtqlLKcLa~LVq~TPY~RL~~~Ll~~vv~~l~~~i~~~~~~~~d~~al~VaaL~cL~avls~~~ 576 (1127)
.|...+.. +.+......+++|+..+.+..+..... .....++..+...+...+. . ..++.+++.++...+....
T Consensus 131 ~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~il~~~~~~l~~~~~--~--~~v~~~a~~~l~~~~~~~~ 205 (458)
T d1ibrb_ 131 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEP--S--NNVKLAATNALLNSLEFTK 205 (458)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG-GGHHHHHHHHHHHHSTTCC--C--HHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhh-hhHHHHHHHHHHHhccccc--C--HHHHHHHHHHHHHHHHhhh
Confidence 34444444 344445667888988888777644432 3445556555555533221 1 2367788888877765432
Q ss_pred ChhHHHHHHHHhhhcCCCCCCCcchhHHHHHhhhhcCCCCchHhHHHHHHHHHHhhChhhhhhhHHHHHHH-HHHHHHhh
Q 035871 577 APVQVKQMFLEEISAGSVEVDKRSGVLFTLLQCSERLASPAICFESLQALRAVSHNYPNIMSSYWQQVSTI-VFKILKAA 655 (1127)
Q Consensus 577 ~~~eV~~~L~~e~ssg~~~~~~~s~~L~~Ll~~~~~~~~~~vRlEAlQvL~ala~~yp~l~~~~~~~l~~v-l~~~L~~~ 655 (1127)
...+.... ...++..+.... .+....+|..++++|..++..+|..+.+|...+... +...+.
T Consensus 206 ~~~~~~~~--------------~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~-- 268 (458)
T d1ibrb_ 206 ANFDKESE--------------RHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-- 268 (458)
T ss_dssp HHHTSHHH--------------HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH--
T ss_pred hhhhhHHH--------------HHHhHhhHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--
Confidence 21111000 000111122222 233467999999999999999998887776543222 222221
Q ss_pred CCCCcccccCCCCCCCccccchhHHHHHHHHHHHHHHhhhcccCccccccccccCCCCcchhhhhhccCCCCcccccchh
Q 035871 656 SPEVPAKAWKGHVGNTAGFIGEKVVTAAIKVLDESLRAISGFKGTEDLLDDKLLDNPFTSDCIRIKNISSAPLYEQESSE 735 (1127)
Q Consensus 656 ~~~~~~~~~~g~~~~~~~l~g~~~~l~A~klLdE~lra~~g~~g~~~~~~~~l~d~~~~s~~~~~~~~~~~p~~~~~~~~ 735 (1127)
.++ +.+...|+..+..+........... . ....+ . ..+..
T Consensus 269 -~~~-----------------~~~~~~a~~~l~~i~~~~~~~~~~~--~-~~~~~--~-----------~~~~~------ 308 (458)
T d1ibrb_ 269 -SDI-----------------DEVALQGIEFWSNVCDEEMDLAIEA--S-EAAEQ--G-----------RPPEH------ 308 (458)
T ss_dssp -CSS-----------------HHHHHHHHHHHHHHHHHHHHHHHHH--C-CTTCS--S-----------SCSSC------
T ss_pred -ccc-----------------HHHHHHHHHHHHHHHHHHHHHHHhh--h-hHHHh--h-----------hHHHH------
Confidence 111 1344455555554432110000000 0 00000 0 00000
Q ss_pred hhhhhhhhhhcchhhhHHHHHhhHHHHHc----------cCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhh
Q 035871 736 DIKESAKAFQSGSEQWSEMIEKHMPLILQ----------HISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSA 805 (1127)
Q Consensus 736 ~~~~~~~~~~l~~~~W~~iie~~Lp~~l~----------d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~ 805 (1127)
....++...++..+|...+ +.+..+|.+|.+|+..+.. .++++.-..++. .+...
T Consensus 309 ----------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~----~~~~~~~~~l~~-~i~~~ 373 (458)
T d1ibrb_ 309 ----------TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT----CCEDDIVPHVLP-FIKEH 373 (458)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH----HTTTTHHHHHHH-HHHHH
T ss_pred ----------HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHH----hccHhhhhHHHH-HHHHH
Confidence 0011122222323332222 2235799999999998642 234433444555 34567
Q ss_pred ccCCCHhHHHHHHHHHhhhhc--ccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhh
Q 035871 806 LHDDVASVRSAACRAIGVISC--FPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIR 871 (1127)
Q Consensus 806 ~~De~~~VRaAA~RALGvlv~--~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~ 871 (1127)
++|+++.+|.+|+.+||.++- .+... ..|+...++.|+..++|++..||..|+|+||++++.+.
T Consensus 374 l~s~~~~~r~aal~~l~~i~~~~~~~~~--~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 374 IKNPDWRYRDAAVMAFGCILEGPEPSQL--KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCTTTT--CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred hcCCCHHHHHHHHHHHHHHHHhcCHhHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999863 22221 23567788999999999999999999999999998764
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.96 E-value=1.8e-10 Score=106.19 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=84.7
Q ss_pred HccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHH
Q 035871 763 LQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIH 842 (1127)
Q Consensus 763 l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~ 842 (1127)
|.|+++.||.+|..+|+.+|++.+ ..| ..+++|+++.||..|+++||.+. . ..+++
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~~~~------------~~L-~~~l~d~~~~vR~~a~~~L~~~~------~-----~~~~~ 56 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGDEAF------------EPL-LESLSNEDWRIRGAAAWIIGNFQ------D-----ERAVE 56 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSSTTH------------HHH-HHGGGCSCHHHHHHHHHHHGGGC------S-----HHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCHHHH------------HHH-HHHHcCCCHHHHHHHHHHHHhcc------h-----hhhHH
Confidence 468899999999999999997653 223 35678999999999999999882 2 46788
Q ss_pred HHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHh
Q 035871 843 AVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLG 918 (1127)
Q Consensus 843 aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALG 918 (1127)
.|...++|++..||..|+||||.|++. +.+..|.+ +.+|.+ .||..|++||.
T Consensus 57 ~L~~~l~d~~~~VR~~a~~aL~~i~~~--------------------~~~~~L~~----ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 57 PLIKLLEDDSGFVRSGAARSLEQIGGE--------------------RVRAAMEK----LAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCSH--------------------HHHHHHHH----HTTSCCTHHHHHHHHHGG
T ss_pred HHHhhhccchhHHHHHHHHHHHHhCcc--------------------chHHHHHH----HHcCCCHHHHHHHHHHHH
Confidence 888889999999999999999999753 11222222 235554 79999999985
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=2.4e-08 Score=108.90 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhc
Q 035871 794 QEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHC 873 (1127)
Q Consensus 794 q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~ 873 (1127)
...++..+ ..+++++++.|+..|+++|+.++..+.-......-..+++.+...+.+++..|+..|.++|+|++..-...
T Consensus 186 ~~~~l~~l-~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~ 264 (434)
T d1q1sc_ 186 VEQILPTL-VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 264 (434)
T ss_dssp HHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhhHHHHH-HHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHH
Confidence 34455533 46678899999999999999986432211111111235677777889999999999999999998521000
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 035871 874 IDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT 953 (1127)
Q Consensus 874 ~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~ 953 (1127)
... .+....+..+.+. +..+++.||..|+.+|+|+...-... ........+++.|++.+.
T Consensus 265 ~~~---------~~~~~~~~~l~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~i~~~~~i~~li~~l~ 324 (434)
T d1q1sc_ 265 TQK---------VIDAGALAVFPSL---LTNPKTNIQKEATWTMSNITAGRQDQ--------IQQVVNHGLVPFLVGVLS 324 (434)
T ss_dssp HHH---------HHHTTGGGGHHHH---TTCSSHHHHHHHHHHHHHHTTSCHHH--------HHHHHHTTCHHHHHHHHH
T ss_pred HHH---------HHhccccchHHHh---hcccchhhhHHHHHHHhhhccccchh--------HHHHhhhhhHHHHHHHHh
Confidence 000 0000011122221 12455579999999999996321100 000012346788899999
Q ss_pred cCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHHHHHHHHhc
Q 035871 954 TGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 954 ~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVRi~AA~AL~ 1012 (1127)
+++.+||-+||+||+|+...........-....+++.|+.++ +.++-+++..|..+|.
T Consensus 325 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~d~~~~~~~l~~l~ 382 (434)
T d1q1sc_ 325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAIS 382 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHT-TSSCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHHHHHHH
Confidence 999999999999999997432110000000122578899988 5688999999988886
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=2.5e-08 Score=112.30 Aligned_cols=228 Identities=14% Similarity=0.199 Sum_probs=152.3
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhccccccc
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQ 832 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~ 832 (1127)
.+...+++++..++..|+.||++|..+. .+.+.. ++.. +..++.+.++.++..|+++|.+++..+.-..
T Consensus 166 ~l~~lL~s~~~~i~~~a~~~L~nia~~~-----~~~r~~l~~~~~~~~-L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~ 239 (503)
T d1wa5b_ 166 LFIQLLYTGSVEVKEQAIWALGNVAGDS-----TDYRDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 239 (503)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTCHHH-HHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHhhhh-----HHHHHHHHhhccccc-chhhcccCCHHHHHHHHHHHHHHhcCCccch
Confidence 3445677888999999999999985432 122222 2332 3477888999999999999999986554444
Q ss_pred chHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhh
Q 035871 833 SAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSN 912 (1127)
Q Consensus 833 d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsn 912 (1127)
+...+..+++.+...+...+..++..|+|+|+++++.-...... .+....+..+++. ...++++|+.+
T Consensus 240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~~~~~l~~l---l~~~~~~v~~~ 307 (503)
T d1wa5b_ 240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA---------VIDVRIPKRLVEL---LSHESTLVQTP 307 (503)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHH---------HHHTTCHHHHHHG---GGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhh---------hhhhhhhhhhhhc---ccCCchhhhhh
Confidence 44556677888888999999999999999999998631110000 0001112233321 13456689999
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHH
Q 035871 913 AVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILL 992 (1127)
Q Consensus 913 AvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll 992 (1127)
|++++||+...-... -.......+++.|.+.+.+.+..||=.+|++|+|+..+..-... .-....+++.|+
T Consensus 308 al~~l~nl~~~~~~~--------~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~-~i~~~~~l~~li 378 (503)
T d1wa5b_ 308 ALRAVGNIVTGNDLQ--------TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLV 378 (503)
T ss_dssp HHHHHHHHTTSCHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHH-HHHHccccchhH
Confidence 999999996211100 00001123567888888999999999999999999864321100 001234678888
Q ss_pred HHHhcCCChHHHHHHHHHhcC
Q 035871 993 LLLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 993 ~ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
..+. ..+++||..|+.+|+.
T Consensus 379 ~~l~-~~~~~v~~~a~~~l~n 398 (503)
T d1wa5b_ 379 KLLE-VAEYKTKKEACWAISN 398 (503)
T ss_dssp HHHH-HSCHHHHHHHHHHHHH
T ss_pred Hhcc-cCChhHHHHHHHHHHH
Confidence 8885 5789999999999974
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=3.6e-08 Score=103.20 Aligned_cols=219 Identities=17% Similarity=0.107 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHH----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEF----IISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHA 843 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~a 843 (1127)
...|..|+++|+.+-... +..+.+ -+..++..+++++++.||..|+++||.++....-......-...++.
T Consensus 31 ~~~~~~Al~~L~~L~~~~-----d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~ 105 (264)
T d1xqra1 31 QQEREGALELLADLCENM-----DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 105 (264)
T ss_dssp HHHHHHHHHHHHHHHTSH-----HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCH-----HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 356777777777753211 111111 12224445678899999999999999997432111111112355778
Q ss_pred HHHhc-CCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhh
Q 035871 844 VEINT-HDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSR 922 (1127)
Q Consensus 844 Ll~~l-~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~ 922 (1127)
|+..+ +|++..||.+|+|||+|++..-..+... ......+..|++.+ ..++++++.+|+++|+|++.
T Consensus 106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~---------~~~~~gi~~L~~lL---~~~~~~~~~~a~~~L~~l~~ 173 (264)
T d1xqra1 106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ---------FLRLDGFSVLMRAM---QQQVQKLKVKSAFLLQNLLV 173 (264)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH---------HHHTTHHHHHHHHH---HSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHH---------HHHhhhhhHHHHHH---hcCchHHHHHHHHHHHHHHh
Confidence 88777 4788899999999999998542111100 00111233333321 24556899999999999974
Q ss_pred ccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhcccccc--c--cCCCchhHHHHHHHHHHhcC
Q 035871 923 FVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETIN--L--EDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 923 ~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~--~--~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
.-+.. .....-..+++.|+..+++++.+||=+|+.||+++..+..-. . ...--...+...+++.+.+.
T Consensus 174 ~~~~~--------~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~ 245 (264)
T d1xqra1 174 GHPEH--------KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245 (264)
T ss_dssp HCGGG--------HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred ccHHH--------HHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccch
Confidence 32211 011122347899999999999999999999999997542110 0 00011233445556666666
Q ss_pred CChHHHHHHHHHh
Q 035871 999 SNFKIRIQAAAAL 1011 (1127)
Q Consensus 999 ~NFKVRi~AA~AL 1011 (1127)
++++.++..+..|
T Consensus 246 ~~~~e~~~~~~~l 258 (264)
T d1xqra1 246 EEYQEELEFCEKL 258 (264)
T ss_dssp GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.3e-08 Score=110.20 Aligned_cols=229 Identities=14% Similarity=0.014 Sum_probs=146.2
Q ss_pred HHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 759 MPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 759 Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
|..++.+++..+|..|+.+++++.........--.-..++..++-.+-+.+++.++..|+++|+.++..+..+. ..+-.
T Consensus 22 L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~~~ 100 (529)
T d1jdha_ 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKS 100 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH-HHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH-HHHHC
Confidence 55778899999999999999998643321111111123455454333345778999999999999864333221 11223
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhhHHHHH
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSNAVRGL 917 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsnAvRAL 917 (1127)
..++.|+..+.+++..|+..|+|+|+|++..-..... .......+..|++ ..+ ++++++..|+++|
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~---------~~~~~g~i~~Lv~----lL~~~~~~~~~~a~~~L 167 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM---------AVRLAGGLQKMVA----LLNKTNVKFLAITTDCL 167 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH---------HHHHHTHHHHHHH----GGGCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh---------HHHhcCCchHHHH----HHHccChHHHHHHHHHH
Confidence 4578888899999999999999999999853110000 0001122344433 344 4458999999999
Q ss_pred hhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccC-CccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHh
Q 035871 918 GNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTG-NVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLR 996 (1127)
Q Consensus 918 GnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~-n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~ 996 (1127)
+++...-... .........+..|++.+... +.+++|+++.+++++..++.....- -...+++.|..++
T Consensus 168 ~~l~~~~~~~--------~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~--~~~g~~~~L~~ll- 236 (529)
T d1jdha_ 168 QILAYGNQES--------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI--VEAGGMQALGLHL- 236 (529)
T ss_dssp HHHHTTCHHH--------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH--HHTTHHHHHHTTT-
T ss_pred HHHhhhhhHH--------HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchh--hhhhhhhhHHHHh-
Confidence 9996321110 00112234578888888654 4789999999999997665432100 0112567888888
Q ss_pred cCCChHHHHHHHHHhc
Q 035871 997 DSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 997 ~~~NFKVRi~AA~AL~ 1012 (1127)
.+++.+++.+|+.+|+
T Consensus 237 ~~~~~~~~~~a~~~l~ 252 (529)
T d1jdha_ 237 TDPSQRLVQNCLWTLR 252 (529)
T ss_dssp TSSCHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhHHH
Confidence 4688899999999985
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=1.1e-07 Score=106.86 Aligned_cols=222 Identities=17% Similarity=0.173 Sum_probs=142.0
Q ss_pred HHc-cCChhHHHHHHHHHhccchhHHhhcchhHHHH-----HHHHHHhhhccCCCHhHHHHHHHHHhhhhcc-cccccch
Q 035871 762 ILQ-HISSMVRTAAVTCFAGITSSVFFSLLKETQEF-----IISSLIDSALHDDVASVRSAACRAIGVISCF-PQVSQSA 834 (1127)
Q Consensus 762 ~l~-d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~-----~i~~Lll~~~~De~~~VRaAA~RALGvlv~~-p~L~~d~ 834 (1127)
.++ +.++.++..|+.||++|.... .+.... ++. ++...+.+++..|+..|+++||+++.. +..+. .
T Consensus 127 ~l~~~~~~~iq~~a~~~L~ni~~~~-----~~~~~~~~~~g~i~-~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~-~ 199 (503)
T d1wa5b_ 127 FMRENQPEMLQLEAAWALTNIASGT-----SAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD-Y 199 (503)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTCHH-HHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHhCCChH-HHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHH-H
Confidence 444 446789999999999986432 111111 233 345667888999999999999998632 22211 1
Q ss_pred HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhcc-CCchhhhhH
Q 035871 835 EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTK-DGDKIKSNA 913 (1127)
Q Consensus 835 ~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~-D~DKVRsnA 913 (1127)
..-...++.++..+.+.+..++..++|+|.|++..-.. ......+..++...++... +++.++.+|
T Consensus 200 l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~-------------~~~~~~~~~~l~~l~~~l~~~d~~~~~~~ 266 (503)
T d1wa5b_ 200 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP-------------QPDWSVVSQALPTLAKLIYSMDTETLVDA 266 (503)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-------------CCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred HHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc-------------chHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 11123467788888999999999999999999953110 0001111122222233344 445799999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHH
Q 035871 914 VRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLL 993 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ 993 (1127)
+.+|+++...-... -....-..+++.|+..+.+++.+|+.+|+.+|||+..+..-... .-....+++.|..
T Consensus 267 ~~~l~~l~~~~~~~--------~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~-~~~~~~~l~~l~~ 337 (503)
T d1wa5b_ 267 CWAISYLSDGPQEA--------IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ-VVINAGVLPALRL 337 (503)
T ss_dssp HHHHHHHHSSCHHH--------HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHH
T ss_pred HHHHHhhccCCchh--------hhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHH-hhhccchHHHHHH
Confidence 99999996211100 00011124567889999999999999999999999865422100 0011235678888
Q ss_pred HHhcCCChHHHHHHHHHhcC
Q 035871 994 LLRDSSNFKIRIQAAAALAV 1013 (1127)
Q Consensus 994 ll~~~~NFKVRi~AA~AL~~ 1013 (1127)
++. +++-.||..|+.+|+.
T Consensus 338 ll~-~~~~~i~~~~~~~l~n 356 (503)
T d1wa5b_ 338 LLS-SPKENIKKEACWTISN 356 (503)
T ss_dssp HTT-CSCHHHHHHHHHHHHH
T ss_pred Hhc-CCCHHHHHHHHHHHHH
Confidence 884 5788999999999974
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.6e-07 Score=103.20 Aligned_cols=227 Identities=16% Similarity=-0.010 Sum_probs=149.7
Q ss_pred HHHHccC-ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHH
Q 035871 760 PLILQHI-SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIID 838 (1127)
Q Consensus 760 p~~l~d~-~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~ 838 (1127)
...+.++ ++.++..|+.+|.++....-..- .--....+..| ..+++++++.|+..|+++|++++....-......-.
T Consensus 65 ~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~~~g~i~~L-i~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 142 (529)
T d1jdha_ 65 VRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPAL-VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 142 (529)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCchhHH-HHHHCCCHHHH-HHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhc
Confidence 3566654 58899999999999864331110 00011234544 477899999999999999999975433322221234
Q ss_pred HHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCchhhhhHHHHHh
Q 035871 839 KFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGDKIKSNAVRGLG 918 (1127)
Q Consensus 839 ~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALG 918 (1127)
..++.|...+++++..||..|+|+|++++..-...... ......+..|+... ...+.++++.+++++++
T Consensus 143 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~---------~~~~~~~~~L~~ll--~~~~~~~~~~~~~~~l~ 211 (529)
T d1jdha_ 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI---------ILASGGPQALVNIM--RTYTYEKLLWTTSRVLK 211 (529)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH---------HHHTTHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHH---------HHhcccchHHHHHH--HhhhhHHHHHHHHHHHh
Confidence 57888999999999999999999999998431100000 00001122232221 12456689999999999
Q ss_pred hhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHHHhcC
Q 035871 919 NLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 919 nLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
++... .+. .....-..+++.|++.+.+++.+++-||+.+|+++-.... .......+++.|..++. +
T Consensus 212 ~ls~~--~~~-------~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~----~~~~~~~~i~~Lv~ll~-~ 277 (529)
T d1jdha_ 212 VLSVC--SSN-------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLG-S 277 (529)
T ss_dssp HHTTS--TTH-------HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT----TCSCCHHHHHHHHHHTT-C
T ss_pred hhhcc--ccc-------cchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc----chhhhhhcchhhhhhcc-c
Confidence 98511 000 0011123467889999999999999999999999854322 22344678999999995 5
Q ss_pred CChHHHHHHHHHhcC
Q 035871 999 SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~ 1013 (1127)
.+..||..|+.+|+.
T Consensus 278 ~~~~~~~~a~~~L~~ 292 (529)
T d1jdha_ 278 DDINVVTCAAGILSN 292 (529)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 788999999999974
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.8e-05 Score=83.57 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=97.7
Q ss_pred hccCCCHhHHHHHHHHHhhhhcccccccc-----hHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCC
Q 035871 805 ALHDDVASVRSAACRAIGVISCFPQVSQS-----AEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAF 879 (1127)
Q Consensus 805 ~~~De~~~VRaAA~RALGvlv~~p~L~~d-----~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~ 879 (1127)
.....++.++..++++++.++........ ...-+..++.|...+.+++..||..|+|+|+|++..-..
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~------- 364 (457)
T d1xm9a1 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL------- 364 (457)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-------
T ss_pred HhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH-------
Confidence 34567889999999999998632221110 000123467888889999999999999999999853110
Q ss_pred CCCCcccccHHHHHHHHHHHHhhcc---CCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-C
Q 035871 880 KPSIDSNANSHLMASLTESALNLTK---DGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-G 955 (1127)
Q Consensus 880 ~~~~~~~is~~lL~~L~e~aL~a~~---D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-~ 955 (1127)
.+.+....+..+++....... ..+.|+.+|+.+|+||...- +.. ....+-..+|+.|++.+.+ +
T Consensus 365 ----~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~-------~~~-~~~l~~~g~i~~L~~l~~~~~ 432 (457)
T d1xm9a1 365 ----HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-------PQL-AKQYFSSSMLNNIINLCRSSA 432 (457)
T ss_dssp ----HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-------THH-HHHHCCHHHHHHHHHHHHCTT
T ss_pred ----HHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCC-------HHH-HHHHHHCCCHHHHHHHHhCCC
Confidence 001222223344432211111 22369999999999996210 000 0001224678999998865 6
Q ss_pred CccchhhHHHHHHhhhcccccc
Q 035871 956 NVKVQWNVCRALSNLFLNETIN 977 (1127)
Q Consensus 956 n~KVRWNAc~ALGnl~~n~~i~ 977 (1127)
+.+|+..||.+|+++++++.+.
T Consensus 433 ~~~~~~aA~~~L~~L~~~~~~~ 454 (457)
T d1xm9a1 433 SPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp CHHHHHHHHHHHHTTSSSTTCS
T ss_pred CHHHHHHHHHHHHHHHcCHhhH
Confidence 7899999999999999987654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5.7e-08 Score=101.67 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=98.5
Q ss_pred HHHHH-hcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhh
Q 035871 842 HAVEI-NTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKD-GDKIKSNAVRGLGN 919 (1127)
Q Consensus 842 ~aLl~-~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGn 919 (1127)
+.++. .+++++..||..|+|+|||++..-...... ......+..|++.. .++ ++.||.+|+.||++
T Consensus 61 ~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~---------~~~~~~i~~Lv~lL---~~~~~~~v~~~a~~aL~~ 128 (264)
T d1xqra1 61 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ---------VLGLGALRKLLRLL---DRDACDTVRVKALFAISC 128 (264)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH---------HHHTTHHHHHHHHH---HHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHcCchHHHHHHh---hcCCCHHHHHHHHHHHHH
Confidence 44443 578899999999999999999631110000 11112344444421 233 45799999999999
Q ss_pred hhhccccCCCCCCCCCCChhHHHHHHHHHHHhhccCCccchhhHHHHHHhhhccc-cccccCCCchhHHHHHHHHHHhcC
Q 035871 920 LSRFVKYTSSSHPASLGDSRWLERIVQALVSCVTTGNVKVQWNVCRALSNLFLNE-TINLEDMDWAPSVFSILLLLLRDS 998 (1127)
Q Consensus 920 Ll~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~~n~KVRWNAc~ALGnl~~n~-~i~~~~~~wa~~v~~~Ll~ll~~~ 998 (1127)
+.+.-+... ........++.|++.+.+++.+++.+||.+|+++.... .... .-....+++.|+.++. +
T Consensus 129 l~~~~~~~~--------~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~v~~L~~lL~-~ 197 (264)
T d1xqra1 129 LVREQEAGL--------LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG--TLCSMGMVQQLVALVR-T 197 (264)
T ss_dssp HHTTCHHHH--------HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHTTHHHHHHHHHT-S
T ss_pred HhccchhhH--------HHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHH--HHHHhhhHHHHHHHHc-C
Confidence 973322100 00112446889999999999999999999999997542 2210 0112236899999995 5
Q ss_pred CChHHHHHHHHHhcC
Q 035871 999 SNFKIRIQAAAALAV 1013 (1127)
Q Consensus 999 ~NFKVRi~AA~AL~~ 1013 (1127)
.+-+||.+|+.||+.
T Consensus 198 ~~~~~~~~a~~aL~~ 212 (264)
T d1xqra1 198 EHSPFHEHVLGALCS 212 (264)
T ss_dssp CCSTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 788999999999973
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.09 E-value=0.0033 Score=74.38 Aligned_cols=225 Identities=8% Similarity=0.050 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhh--ccCCCHhHHHHHHHHHhhhhccccccc-----------ch
Q 035871 768 SMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSA--LHDDVASVRSAACRAIGVISCFPQVSQ-----------SA 834 (1127)
Q Consensus 768 ~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~--~~De~~~VRaAA~RALGvlv~~p~L~~-----------d~ 834 (1127)
...|.+|.+++..+....-......-..++.. .+... ..+.++..|-+|..++|.+....+... -.
T Consensus 375 ~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 453 (959)
T d1wa5c_ 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKG-FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (959)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHH
Confidence 46789998888876543211111111111111 11111 234677889999999998864443321 12
Q ss_pred HHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhH
Q 035871 835 EIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNA 913 (1127)
Q Consensus 835 ~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnA 913 (1127)
.|+...+...+....++...+|.+|.|.+|..++.+. ++.+..+++.+++...|.+ .||..|
T Consensus 454 ~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~-----------------~~~~~~~~~~l~~~L~~~~~~V~~~a 516 (959)
T d1wa5c_ 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-----------------KAQLIELMPILATFLQTDEYVVYTYA 516 (959)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-----------------HHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc-----------------HHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 2223333344445567778899999999999986421 2234455566666667666 799999
Q ss_pred HHHHhhhhhccccCCCCCCCCC--CChhHHHHHHHHHHHhhccCC-----ccchhhHHHHHHhhhccccccccCCCchhH
Q 035871 914 VRGLGNLSRFVKYTSSSHPASL--GDSRWLERIVQALVSCVTTGN-----VKVQWNVCRALSNLFLNETINLEDMDWAPS 986 (1127)
Q Consensus 914 vRALGnLl~~l~~~~~~~~~~~--g~~~~~E~~i~aLlk~l~~~n-----~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~ 986 (1127)
++|++.+............... .-...++.+++.|+..+...+ ..+.+....+++.+...- ...-.+.+..
T Consensus 517 ~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~--~~~~~~~~~~ 594 (959)
T d1wa5c_ 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS--EDSIQPLFPQ 594 (959)
T ss_dssp HHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH--TTTTGGGHHH
T ss_pred HHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 9999999866554332111110 111246788888888875432 335677888888876431 1111245667
Q ss_pred HHHHHHHHHh----cCCChHHHHHHHHHhc
Q 035871 987 VFSILLLLLR----DSSNFKIRIQAAAALA 1012 (1127)
Q Consensus 987 v~~~Ll~ll~----~~~NFKVRi~AA~AL~ 1012 (1127)
+.+.|...+. +..|.+.+...-..|+
T Consensus 595 i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~ 624 (959)
T d1wa5c_ 595 LLAQFIEIVTIMAKNPSNPRFTHYTFESIG 624 (959)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 7777766553 4445666666655554
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=3.3e-06 Score=89.38 Aligned_cols=151 Identities=14% Similarity=0.025 Sum_probs=95.3
Q ss_pred hhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCC
Q 035871 804 SALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSI 883 (1127)
Q Consensus 804 ~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~ 883 (1127)
..+++++|.||..|+++||+++.-..-.....+-...++.|...+++++..||..|+|+|+||+..-..+...
T Consensus 9 ~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~------- 81 (457)
T d1xm9a1 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE------- 81 (457)
T ss_dssp HHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH-------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH-------
Confidence 6678999999999999999996422211222233456888999999999999999999999998311000000
Q ss_pred cccccHHHHHHHHHHHHhhccCCchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhh-----------
Q 035871 884 DSNANSHLMASLTESALNLTKDGDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCV----------- 952 (1127)
Q Consensus 884 ~~~is~~lL~~L~e~aL~a~~D~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l----------- 952 (1127)
......+..+++.. ...+++.+|..|+.+|+++.+.-.. .....+..+..++..+
T Consensus 82 --i~~~g~v~~li~~l--~~~~~~~~~~~a~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~ 147 (457)
T d1xm9a1 82 --TRRQNGIREAVSLL--RRTGNAEIQKQLTGLLWNLSSTDEL----------KEELIADALPVLADRVIIPFSGWCDGN 147 (457)
T ss_dssp --HHHTTCHHHHHHHH--TTCCCHHHHHHHHHHHHHHHTSSST----------HHHHHHHHHHHHHHHTTHHHHTCC---
T ss_pred --HHHCCChHHHHHHH--hccCcHHHHHHHHHHHHHHHhhhhh----------HHHHHhcccHHHHHHHHhhhhhhhcch
Confidence 00000123333321 1234557999999999999732111 1123344444444443
Q ss_pred -----ccCCccchhhHHHHHHhhhcccc
Q 035871 953 -----TTGNVKVQWNVCRALSNLFLNET 975 (1127)
Q Consensus 953 -----~~~n~KVRWNAc~ALGnl~~n~~ 975 (1127)
...+..++.+|+.+|.++..++.
T Consensus 148 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 175 (457)
T d1xm9a1 148 SNMSREVVDPEVFFNATGCLRNLSSADA 175 (457)
T ss_dssp ------CCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhcccccHHHHHHHHHHHHHHhcCch
Confidence 23567899999999998876643
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.88 E-value=8.6e-07 Score=92.99 Aligned_cols=65 Identities=23% Similarity=0.097 Sum_probs=44.7
Q ss_pred HHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHH
Q 035871 762 ILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFI 841 (1127)
Q Consensus 762 ~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai 841 (1127)
.|.|++..||+.|..- .. +| ++..+++|+++.||.+|++.||.-
T Consensus 50 ~l~~p~~e~Ra~Aa~~---a~--~~--------------~L~~Ll~D~d~~VR~~AA~~Lp~~----------------- 93 (233)
T d1lrva_ 50 YLADPFWERRAIAVRY---SP--VE--------------ALTPLIRDSDEVVRRAVAYRLPRE----------------- 93 (233)
T ss_dssp GTTCSSHHHHHHHHTT---SC--GG--------------GGGGGTTCSSHHHHHHHHTTSCSG-----------------
T ss_pred HhcCCcHHHHHHHHhc---CC--HH--------------HHHHHhcCCCHHHHHHHHHHcCHH-----------------
Confidence 4568888999888742 11 11 344778999999999999988742
Q ss_pred HHHHHhcCCCCcchhchHHHHH
Q 035871 842 HAVEINTHDPLVSVRITASWAL 863 (1127)
Q Consensus 842 ~aLl~~l~D~~~~VRikAAWAL 863 (1127)
.+...+.|++..||..++.+|
T Consensus 94 -~L~~L~~D~d~~VR~~aa~~l 114 (233)
T d1lrva_ 94 -QLSALMFDEDREVRITVADRL 114 (233)
T ss_dssp -GGGGTTTCSCHHHHHHHHHHS
T ss_pred -HHHHHhcCCChhHHHHHHhcc
Confidence 133445777777777777543
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.83 E-value=7.3e-06 Score=85.76 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=50.1
Q ss_pred hHHHHHccCChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHH
Q 035871 758 HMPLILQHISSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEII 837 (1127)
Q Consensus 758 ~Lp~~l~d~~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv 837 (1127)
.|+.++.|+++.||.+|+..|+ .+ .+..+.+|+++.||.+++..|+.
T Consensus 70 ~L~~Ll~D~d~~VR~~AA~~Lp---~~----------------~L~~L~~D~d~~VR~~aa~~l~~-------------- 116 (233)
T d1lrva_ 70 ALTPLIRDSDEVVRRAVAYRLP---RE----------------QLSALMFDEDREVRITVADRLPL-------------- 116 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSC---SG----------------GGGGTTTCSCHHHHHHHHHHSCT--------------
T ss_pred HHHHHhcCCCHHHHHHHHHHcC---HH----------------HHHHHhcCCChhHHHHHHhccCH--------------
Confidence 5778899999999999987653 21 23466799999999999887642
Q ss_pred HHHHHHHHHhcCCCCcchhchHHH
Q 035871 838 DKFIHAVEINTHDPLVSVRITASW 861 (1127)
Q Consensus 838 ~~ai~aLl~~l~D~~~~VRikAAW 861 (1127)
+.|...++|++..||..++.
T Consensus 117 ----~~L~~Ll~D~d~~VR~~aa~ 136 (233)
T d1lrva_ 117 ----EQLEQMAADRDYLVRAYVVQ 136 (233)
T ss_dssp ----GGGGGGTTCSSHHHHHHHHH
T ss_pred ----HHHHHHhcCCCHHHHHHHHh
Confidence 22445578888889988774
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.68 E-value=0.021 Score=61.80 Aligned_cols=247 Identities=13% Similarity=0.079 Sum_probs=146.9
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhcccccccchHHHHHHHHHHHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQVSQSAEIIDKFIHAVEI 846 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L~~d~~fv~~ai~aLl~ 846 (1127)
.+..|..-.|+|+.+|...- ..++.. +|. .++-.....+....+|+... .| +. ..+..+..
T Consensus 70 ~~~~r~~~lDal~~~GT~~a-------~~~i~~-~I~--~~~ls~~ea~~~l~~l~~~~-~P----t~----~~l~~~~~ 130 (336)
T d1lsha1 70 QKDYRRWILDAVPAMATSEA-------LLFLKR-TLA--SEQLTSAEATQIVASTLSNQ-QA----TR----ESLSYARE 130 (336)
T ss_dssp SHHHHHHHHHHHHHHCSHHH-------HHHHHH-HHH--TTCSCHHHHHHHHHHHHHTC-CC----CH----HHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCCHHH-------HHHHHH-HHH--cCCCCHHHHHHHHHHHhccC-CC----CH----HHHHHHHH
Confidence 35568888899999987541 112222 221 12233332233334444322 23 32 34445554
Q ss_pred hcCC----CCcchhchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc-hhhhhHHHHHhhhh
Q 035871 847 NTHD----PLVSVRITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD-KIKSNAVRGLGNLS 921 (1127)
Q Consensus 847 ~l~D----~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D-KVRsnAvRALGnLl 921 (1127)
.+++ .+..||..+.-++|++......+...- .+.+-+.+...+ . ++.+.+| +-+-=+.+||||++
T Consensus 131 l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~------~~~~~~~l~~~l-~---~~~~~~~~~~~~~~LkaLGN~g 200 (336)
T d1lsha1 131 LLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC------PDELLQPLHDLL-S---QSSDRAKEEEIVLALKALGNAG 200 (336)
T ss_dssp HHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC------CGGGTHHHHHHH-H---HHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHH-H---HhhcccchHHHHHHHHHHhccC
Confidence 4443 468899999999999998765432210 112222222222 2 2223222 45566799999995
Q ss_pred hccccCCCCCCCCCCChhHHHHHHHHHHHhhcc-------CCccchhhHHHHHHhhhccccccccCCCchhHHHHHHHHH
Q 035871 922 RFVKYTSSSHPASLGDSRWLERIVQALVSCVTT-------GNVKVQWNVCRALSNLFLNETINLEDMDWAPSVFSILLLL 994 (1127)
Q Consensus 922 ~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~~-------~n~KVRWNAc~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~l 994 (1127)
. ..+++.|..++.+ .+..||--|.+||.++-.+. ...+.+.|..+
T Consensus 201 ---------------~----p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~---------p~~v~~~l~~i 252 (336)
T d1lsha1 201 ---------------Q----PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---------PRKVQEIVLPI 252 (336)
T ss_dssp ---------------C----GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---------HHHHHHHHHHH
T ss_pred ---------------C----HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC---------cHHHHHHHHHH
Confidence 1 2356677777754 24679999999998875432 24577888888
Q ss_pred Hhc-CCChHHHHHHHHHhcCCCcccccCCchHHHHHHHHHHHHHhccCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 035871 995 LRD-SSNFKIRIQAAAALAVPSSVSDYGKSFSDVVQGLEHILENLGADHLSAPSSFKYRVALQKQKSSFLEEWFKVLCSS 1073 (1127)
Q Consensus 995 l~~-~~NFKVRi~AA~AL~~p~~R~~yG~~~~~V~~~L~~aLe~~~s~~~~df~Eykyrd~L~~Q~~~~l~~~l~~~~~~ 1073 (1127)
..| ..+..|||-|..+|.. - +-...++..+...|+. + =..|+++|...+|+.+..+
T Consensus 253 ~~n~~e~~EvRiaA~~~lm~------t-~P~~~~l~~i~~~l~~---E-------------~~~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 253 FLNVAIKSELRIRSCIVFFE------S-KPSVALVSMVAVRLRR---E-------------PNLQVASFVYSQMRSLSRS 309 (336)
T ss_dssp HHCTTSCHHHHHHHHHHHHH------T-CCCHHHHHHHHHHHTT---C-------------SCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCCChHHHHHHHHHHHh------c-CCCHHHHHHHHHHHHh---C-------------cHHHHHHHHHHHHHHHHhC
Confidence 765 3458899999999962 1 1123466666677753 1 1258999999988887654
Q ss_pred ccccccccccccCCCCchhHHHHHHHHHHHHHHHh
Q 035871 1074 LGESTTHLENENNSVGNQKKEMISKAIRSLIEVYE 1108 (1127)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1108 (1127)
.++-++.+.++.+..++++.
T Consensus 310 ---------------~~P~~~~la~~a~~a~~ll~ 329 (336)
T d1lsha1 310 ---------------SNPEFRDVAAACSVAIKMLG 329 (336)
T ss_dssp ---------------CSGGGHHHHHHHHHHHTTSC
T ss_pred ---------------CCcchHHHHHHHHHHHHHhC
Confidence 23356677778777776654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.30 E-value=19 Score=41.15 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHhccchhHHhhcchhHHHHHHHHHHhhhccCCCHhHHHHHHHHHhhhhccccc--------cc--chHH
Q 035871 767 SSMVRTAAVTCFAGITSSVFFSLLKETQEFIISSLIDSALHDDVASVRSAACRAIGVISCFPQV--------SQ--SAEI 836 (1127)
Q Consensus 767 ~~~VRaaAc~cLa~Igs~~f~~Lp~~~q~~~i~~Lll~~~~De~~~VRaAA~RALGvlv~~p~L--------~~--d~~f 836 (1127)
.+.+|+.+|-+++..... ++.+....++..+ ...+.|+++.||..|++|++.++....- .. -..|
T Consensus 471 ~~~lr~~~~~~i~~~~~~----~~~~~~~~~~~~l-~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~ 545 (959)
T d1wa5c_ 471 HIILRVDAIKYIYTFRNQ----LTKAQLIELMPIL-ATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS 545 (959)
T ss_dssp CHHHHHHHHHHHHHTGGG----SCHHHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred hHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhh
Confidence 478999999999987543 2333344455544 4677899999999999999988632111 11 1234
Q ss_pred HHHHHHHHHHhcCCCCcch-----hchHHHHHHhhhhhhhhcccccCCCCCCcccccHHHHHHHHHHHHhhccCCc--hh
Q 035871 837 IDKFIHAVEINTHDPLVSV-----RITASWALANICDSIRHCIDDFAFKPSIDSNANSHLMASLTESALNLTKDGD--KI 909 (1127)
Q Consensus 837 v~~ai~aLl~~l~D~~~~V-----RikAAWALGNL~d~L~~~~~~~~~~~~~~~~is~~lL~~L~e~aL~a~~D~D--KV 909 (1127)
++..+..++..+.+..... +....-+++.+........ . ...+.++..+.+...+..++.. +.
T Consensus 546 l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~-----~-----~~~~~i~~~l~~~~~~~~~~~~~~~~ 615 (959)
T d1wa5c_ 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-----Q-----PLFPQLLAQFIEIVTIMAKNPSNPRF 615 (959)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-----G-----GGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-----H-----HHHHHHHHHHHHHHHHHhcCccchHH
Confidence 6677777777665444332 3335555666555432211 1 2334556666665555555433 56
Q ss_pred hhhHHHHHhhhhhccc
Q 035871 910 KSNAVRGLGNLSRFVK 925 (1127)
Q Consensus 910 RsnAvRALGnLl~~l~ 925 (1127)
.....+.++.+.+...
T Consensus 616 ~~~~~e~l~~l~~~~~ 631 (959)
T d1wa5c_ 616 THYTFESIGAILNYTQ 631 (959)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777888888876543
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=83.09 E-value=2.7 Score=44.51 Aligned_cols=152 Identities=11% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCHhHHHHHHHHHhhhhcccccc---cchHHHHHHHHHHHHhcCCCCcchhchHHHHHHhhhhhhhhcccccCCCCCCcc
Q 035871 809 DVASVRSAACRAIGVISCFPQVS---QSAEIIDKFIHAVEINTHDPLVSVRITASWALANICDSIRHCIDDFAFKPSIDS 885 (1127)
Q Consensus 809 e~~~VRaAA~RALGvlv~~p~L~---~d~~fv~~ai~aLl~~l~D~~~~VRikAAWALGNL~d~L~~~~~~~~~~~~~~~ 885 (1127)
+++.||..|.-++|.++---|.. -...++....+.+....+..+...+.-+--||||++..-.
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~-------------- 204 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNS-------------- 204 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGG--------------
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCHhH--------------
Confidence 58899999999999987211111 1122344444555555566667778888999999994211
Q ss_pred cccHHHHHHHHHHHHhhccC-CchhhhhHHHHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHhhc--cCCccchhh
Q 035871 886 NANSHLMASLTESALNLTKD-GDKIKSNAVRGLGNLSRFVKYTSSSHPASLGDSRWLERIVQALVSCVT--TGNVKVQWN 962 (1127)
Q Consensus 886 ~is~~lL~~L~e~aL~a~~D-~DKVRsnAvRALGnLl~~l~~~~~~~~~~~g~~~~~E~~i~aLlk~l~--~~n~KVRWN 962 (1127)
+ ..+..+++.--....+ ...||.-|+.||.++.. .++ ..+.+.|..... +.+..||--
T Consensus 205 -i--~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~-------------~~p---~~v~~~l~~i~~n~~e~~EvRia 265 (336)
T d1lsha1 205 -I--KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK-------------RDP---RKVQEIVLPIFLNVAIKSELRIR 265 (336)
T ss_dssp -H--HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-------------TCH---HHHHHHHHHHHHCTTSCHHHHHH
T ss_pred -H--HHHHHHhcccccccccccHHHHHHHHHHHHHhhh-------------cCc---HHHHHHHHHHHcCCCCChHHHHH
Confidence 0 1122221100000111 12699999999998841 111 334445555553 457889998
Q ss_pred HHHHHHhhhccccccccCCCchhHHHHHHHHHHhcCCChHHH
Q 035871 963 VCRALSNLFLNETINLEDMDWAPSVFSILLLLLRDSSNFKIR 1004 (1127)
Q Consensus 963 Ac~ALGnl~~n~~i~~~~~~wa~~v~~~Ll~ll~~~~NFKVR 1004 (1127)
|+.+| +-.||. ..++..+...+..++|.-|+
T Consensus 266 A~~~l--m~t~P~---------~~~l~~i~~~l~~E~~~QV~ 296 (336)
T d1lsha1 266 SCIVF--FESKPS---------VALVSMVAVRLRREPNLQVA 296 (336)
T ss_dssp HHHHH--HHTCCC---------HHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHH--HhcCCC---------HHHHHHHHHHHHhCcHHHHH
Confidence 88887 333442 33666777777777776554
|