Citrus Sinensis ID: 035877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLSI
Secondary Structure (PSIPRED)
cEEEHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHEEHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccEEcccHHHHHHEEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFghniwagffaDSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTnvdiavsrekevplsi
Flexible Loop (DISEMBL)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTnvdiavsrekevplsi
Low Complexity Region (SEG)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMavtlklvvllaliidlaltFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLSI
Disordered region (IsUnstruct)
**FSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAV**********
Disordered Region (DISOPRED)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVP***
Disordered Region (DISEMBL)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSR********
Disordered Region (DISPRO)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEV*L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9LUH2	477	MATE efflux family protei	yes	no	0.907	0.308	0.476	7e-37
Q9LUH3	469	MATE efflux family protei	no	no	0.907	0.313	0.470	5e-36
Q8RWF5	483	MATE efflux family protei	no	no	0.716	0.240	0.335	6e-15
Q9SIA1	477	MATE efflux family protei	no	no	0.716	0.243	0.328	1e-13
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.895	0.285	0.319	1e-13
Q9SIA3	476	MATE efflux family protei	no	no	0.796	0.271	0.296	1e-12
Q9SIA5	476	MATE efflux family protei	no	no	0.790	0.268	0.298	1e-12
Q8GXM8	476	MATE efflux family protei	no	no	0.759	0.258	0.301	7e-12
Q9SIA4	476	MATE efflux family protei	no	no	0.722	0.245	0.307	7e-11
A1L1P9	590	Multidrug and toxin extru	yes	no	0.882	0.242	0.271	6e-09

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  152 bits (385), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 23/170 (13%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I++  +YGLSAA   +VSNELGAG +  AK A +V++KL ++LAL + + L  GH
Sbjct: 306 VNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVGH 365

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           + W G F+DS  I+                       +GVARGCGWQ L   +NLATFY 
Sbjct: 366 DGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLATFYL 425

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIA 151
           IGMP+A   GFKL  +AKGLWIGLICG+  Q+SSL L+ + RK+T +++A
Sbjct: 426 IGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNVA 475

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 109/170 (64%), Gaps = 23/170 (13%)

Query: 5   VNTHVITFNFSYGLSAAH--KVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I++  + GLSAA   +VSNELGAG +  AK A +V++KL ++LAL + +A+  GH
Sbjct: 298 VNTESISYMLTCGLSAATSTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIAILVGH 357

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           + W G F++S  I+                       +GVARGCGWQ LA  +NL TFY 
Sbjct: 358 DAWVGLFSNSHVIKEGFASLRFFLAASITLDSIQGVLSGVARGCGWQRLATVINLGTFYL 417

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIA 151
           IGMP+++L GFKL LHAKGLWIGLICG+  Q++SL L+ + RK+T +  A
Sbjct: 418 IGMPISVLCGFKLKLHAKGLWIGLICGMFCQSASLLLMTIFRKWTKLTAA 467

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 21/137 (15%)

Query: 17  GLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR 76
           G + + +VSNELGAG  + A+ A+   + L  L A I    L    +I+   F++S+E+ 
Sbjct: 311 GAAGSIRVSNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVV 370

Query: 77  NF---------------------AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLN 115
           ++                      GVARG GWQH+  W N+  +Y +G P+ L  GF  +
Sbjct: 371 DYVTELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCH 430

Query: 116 LHAKGLWIGLICGLAAQ 132
           ++ KGLWIG++ G  AQ
Sbjct: 431 MNGKGLWIGVVVGSTAQ 447

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 21/137 (15%)

Query: 17  GLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR 76
           G + + ++SNELGAG  + A+ A+   + L  L A I    L    NI+   F++S+E+ 
Sbjct: 311 GAAGSTRISNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVV 370

Query: 77  NFA---------------------GVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLN 115
           ++                      GVARG GWQ++  W N+  +Y +G P+    GF  +
Sbjct: 371 DYVTELSSLLCLSFMVDGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGH 430

Query: 116 LHAKGLWIGLICGLAAQ 132
           ++ KGLWIG+I G  AQ
Sbjct: 431 MNGKGLWIGVIVGSTAQ 447

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 24/169 (14%)

Query: 12  FNFSYGLSAA--HKVSNELGAGMIDRAK-NAMAVTLKLVVLLALIIDLALTFGHNIWAGF 68
             F  GLSAA   +VSNELGAG    A  + + V +  V++ +++  + L F   +   F
Sbjct: 325 MQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAF 384

Query: 69  FADSQEIRN--------------------FAGVARGCGWQHLAVWVNLATFYFIGMPLAL 108
            +D++ I                       +GVA G GWQ +  +VNL T+Y IG+P+  
Sbjct: 385 TSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGC 444

Query: 109 LFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTN-VDIAVSREK 156
           + GFK +L   G+W G+I G+  Q  +L ++ L+  +T+ V+ A  R K
Sbjct: 445 VLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRVK 493

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 23/152 (15%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           + T  + +    G++AA   +VSN+LGAG+   A+ ++   L L ++ +    + L    
Sbjct: 294 LTTATLHYVIPVGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESSFFSILLFAFR 353

Query: 63  NIWAGFFADSQEIRNFA---------------------GVARGCGWQHLAVWVNLATFYF 101
           NI    F++S+E+ ++                      GVARGCGWQH+    N+  +Y 
Sbjct: 354 NIIGYAFSNSKEVVDYVADLSPLLCLSFVLDGFTAVLNGVARGCGWQHIGALNNVVAYYL 413

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQA 133
           +G P+ +   F   L+ KGLW G++ G A QA
Sbjct: 414 VGAPVGIYLAFSCELNGKGLWCGVVVGSAVQA 445

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%)

Query: 12  FNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFF 69
           +  S G++AA   +VSN LGAG    A+ ++   L L ++ +    + L    NI    F
Sbjct: 301 YVISAGVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAF 360

Query: 70  ADSQEIRNFA---------------------GVARGCGWQHLAVWVNLATFYFIGMPLAL 108
           ++S+E+ ++                      GVARG GWQH+  W N  ++Y +G P+ +
Sbjct: 361 SNSKEVLDYVADLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGI 420

Query: 109 LFGFKLNLHAKGLWIGLICGLAAQASSLFLI 139
              F   L+ KGLW G++ G   QA+ L ++
Sbjct: 421 YLAFSRELNGKGLWCGVVVGSTVQATILAIV 451

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 23/146 (15%)

Query: 17  GLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQE 74
           G++AA   +VSN+LGAG    A+ ++   L L ++ +      L    NI    F++S+E
Sbjct: 306 GVAAAVSTRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKE 365

Query: 75  IRNFA---------------------GVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK 113
           + ++                      GVARGCGWQH+   +N+  +Y +G P+ +   F 
Sbjct: 366 VVDYVADISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFS 425

Query: 114 LNLHAKGLWIGLICGLAAQASSLFLI 139
              + KGLW G++ G A QA+ L ++
Sbjct: 426 REWNGKGLWCGVMVGSAVQATLLAIV 451

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 23/140 (16%)

Query: 17  GLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQE 74
           G++AA   +VSN+LGAG+   A+ ++   L L ++ +      L    NI    F++S+E
Sbjct: 306 GVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKE 365

Query: 75  IRNFA---------------------GVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK 113
           + ++                      GVARG GWQH+    N+  +Y +G P+ +   F 
Sbjct: 366 VVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFN 425

Query: 114 LNLHAKGLWIGLICGLAAQA 133
             L+ KGLW G++ G A QA
Sbjct: 426 RELNGKGLWCGVVVGSAVQA 445

Arabidopsis thaliana (taxid: 3702)

>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 23/166 (13%)

Query: 1   MIFSVNTHVITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTF 60
           +++ + T    F   + ++A+ +V N LGAG  +RAK +  V L   VL++ ++   +  
Sbjct: 315 VVYELATIAYMFPLGFAVAASVRVGNALGAGNTERAKLSAKVALVCGVLVSCVVATLIGC 374

Query: 61  GHNIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATF 99
             ++ A  F   +EI +                       G+ RG G Q L    N+  +
Sbjct: 375 TKDVIAYIFTTEEEIVSRVSQVMIMYGFFHLFDAIAGITGGIVRGAGKQLLGALCNIVGY 434

Query: 100 YFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKF 145
           YF+G P  +   F L++   GLWIG    +  Q  SLF I+L  K 
Sbjct: 435 YFVGFPTGVSLMFALSMGIIGLWIGFFGCVFLQ--SLFFIILIYKL 478

Solute transporter for tetraethylammonium (TEA), cimetidine, metformin, guanidine, N-methylnicotinamide (NMN) and also the zwitterionic cephalosporin cephalexin. Responsible for the secretion of cationic drugs across the brush border membranes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
225461496	493	PREDICTED: MATE efflux family protein AL	0.956	0.314	0.539	4e-42
302142980	438	unnamed protein product [Vitis vinifera]	0.956	0.353	0.539	4e-42
224114908	485	predicted protein [Populus trichocarpa]	0.975	0.325	0.546	1e-40
302142981	438	unnamed protein product [Vitis vinifera]	0.956	0.353	0.567	5e-40
356549709	491	PREDICTED: MATE efflux family protein AL	0.975	0.321	0.508	7e-40
225461494	487	PREDICTED: MATE efflux family protein AL	0.956	0.318	0.567	8e-40
255574668	484	TRANSPARENT TESTA 12 protein, putative [	0.944	0.316	0.545	3e-39
147858860	1134	hypothetical protein VITISV_039558 [Viti	0.907	0.129	0.535	9e-39
356546866	488	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.969	0.321	0.494	3e-37
356546864	500	PREDICTED: MATE efflux family protein AL	0.975	0.316	0.458	2e-36

>gi|225461496|ref|XP_002282551.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 123/178 (69%), Gaps = 23/178 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I +  +YG SAA   +VSNELGAG  DRAK+AMAVTLK+ + +AL++ L L   H
Sbjct: 312 VNTEAIAYMIAYGFSAAASTRVSNELGAGNPDRAKHAMAVTLKISICVALVVVLLLALCH 371

Query: 63  NIWAGFFADSQEI-RNFA--------------------GVARGCGWQHLAVWVNLATFYF 101
           NIWA FF+DS  I ++FA                    GVARGCGWQH+A+++NLATFY 
Sbjct: 372 NIWASFFSDSTVIIKDFAYMTPLLVASILLDSAQGVLSGVARGCGWQHIAMYINLATFYL 431

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVP 159
           IGMP+++L  FKL L+AKGLWIGLICGL+ QA+SL  I LR  +T++ ++VS EKE P
Sbjct: 432 IGMPISVLLAFKLKLYAKGLWIGLICGLSCQAASLLFITLRTNWTSIKLSVSCEKENP 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142980|emb|CBI20275.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 123/178 (69%), Gaps = 23/178 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I +  +YG SAA   +VSNELGAG  DRAK+AMAVTLK+ + +AL++ L L   H
Sbjct: 257 VNTEAIAYMIAYGFSAAASTRVSNELGAGNPDRAKHAMAVTLKISICVALVVVLLLALCH 316

Query: 63  NIWAGFFADSQEI-RNFA--------------------GVARGCGWQHLAVWVNLATFYF 101
           NIWA FF+DS  I ++FA                    GVARGCGWQH+A+++NLATFY 
Sbjct: 317 NIWASFFSDSTVIIKDFAYMTPLLVASILLDSAQGVLSGVARGCGWQHIAMYINLATFYL 376

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVP 159
           IGMP+++L  FKL L+AKGLWIGLICGL+ QA+SL  I LR  +T++ ++VS EKE P
Sbjct: 377 IGMPISVLLAFKLKLYAKGLWIGLICGLSCQAASLLFITLRTNWTSIKLSVSCEKENP 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114908|ref|XP_002316890.1| predicted protein [Populus trichocarpa] gi|222859955|gb|EEE97502.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 122/181 (67%), Gaps = 23/181 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  + +  +YGLSAA   +VSNELG G  +RAKNAMAVTLKL VLLAL++ LAL FGH
Sbjct: 305 VNTETVAYMLTYGLSAAASTRVSNELGEGNPERAKNAMAVTLKLSVLLALLVVLALAFGH 364

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           NIWAG F+ S  I                       F+GVARGCGWQHLAV+ NLATFY 
Sbjct: 365 NIWAGLFSSSPTIAKEFASMAPFLAISITLDSVQGVFSGVARGCGWQHLAVYANLATFYC 424

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLS 161
           IGMP+A + GFKL L+ KGLWIGLI GL  QA +L LI +R  +T  D+++++EKE P+ 
Sbjct: 425 IGMPVACVLGFKLKLYVKGLWIGLISGLCCQAGTLLLITIRTNWTATDLSITKEKENPIV 484

Query: 162 I 162
           +
Sbjct: 485 V 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142981|emb|CBI20276.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 124/178 (69%), Gaps = 23/178 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I +  SYGLSAA   +VSNELGA   +RAK AMAVTLKL +LLA+++ + L  GH
Sbjct: 257 VNTENIAYMISYGLSAAASTRVSNELGACNPNRAKTAMAVTLKLALLLAVLVVVVLALGH 316

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           NIWA FF+DS+ I                       F+GVARGCGWQHLAV++NLATFY 
Sbjct: 317 NIWASFFSDSRVIIKDYASMVPLLAISILIDYAQGVFSGVARGCGWQHLAVYINLATFYC 376

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVP 159
           IG+P+A+L GFKL LH KGLWIGLICGL+ QA SL LI L  K+T V+++V++EKE P
Sbjct: 377 IGVPIAILLGFKLELHVKGLWIGLICGLSCQAGSLMLITLHTKWTRVELSVNQEKENP 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549709|ref|XP_003543234.1| PREDICTED: MATE efflux family protein ALF5-like [Glycine max]

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 118/181 (65%), Gaps = 23/181 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           +NT  I +  +YGLSAA   +VSNELGAG  +RAK+AM+VTLKL +LL L   LAL FGH
Sbjct: 311 INTEFIAYMITYGLSAAASTRVSNELGAGNPERAKHAMSVTLKLSLLLGLCFVLALGFGH 370

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           NIW  FF+DS  I+                       +GV+RGCGWQHLA ++NLATFY 
Sbjct: 371 NIWIQFFSDSSTIKKEFASVTPLLAISILLDAIQGVLSGVSRGCGWQHLAAYINLATFYL 430

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLS 161
           IG+P++   GFK NL  KGLWIGLICGL  Q+ +LFL + R K+T +D++   +KE PL 
Sbjct: 431 IGLPISCFLGFKTNLQYKGLWIGLICGLLCQSGTLFLFIRRAKWTKLDLSRDNDKERPLV 490

Query: 162 I 162
           +
Sbjct: 491 V 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461494|ref|XP_002282547.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 124/178 (69%), Gaps = 23/178 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I +  SYGLSAA   +VSNELGA   +RAK AMAVTLKL +LLA+++ + L  GH
Sbjct: 306 VNTENIAYMISYGLSAAASTRVSNELGACNPNRAKTAMAVTLKLALLLAVLVVVVLALGH 365

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           NIWA FF+DS+ I                       F+GVARGCGWQHLAV++NLATFY 
Sbjct: 366 NIWASFFSDSRVIIKDYASMVPLLAISILIDYAQGVFSGVARGCGWQHLAVYINLATFYC 425

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVP 159
           IG+P+A+L GFKL LH KGLWIGLICGL+ QA SL LI L  K+T V+++V++EKE P
Sbjct: 426 IGVPIAILLGFKLELHVKGLWIGLICGLSCQAGSLMLITLHTKWTRVELSVNQEKENP 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574668|ref|XP_002528243.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532329|gb|EEF34128.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 118/176 (67%), Gaps = 23/176 (13%)

Query: 5   VNTHVITFNFSYGLSA--AHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  + +  +YGLSA  + +VSNELGA    RAK++M VTLKL + LAL+I LAL FGH
Sbjct: 304 VNTEAVAYMCTYGLSAVASTRVSNELGADNPGRAKSSMLVTLKLSIFLALVIVLALLFGH 363

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           N+WAG F++S  I                        +GVARGCGWQHLAV+ NLATFYF
Sbjct: 364 NLWAGLFSNSSSIIEAFASVTPLLAVSITLDAVQGILSGVARGCGWQHLAVYANLATFYF 423

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKE 157
           IGMP+A L GFK  L+AKGLWIGLICGL  QA +L LI LR K+T + ++ +REKE
Sbjct: 424 IGMPIAALLGFKFKLYAKGLWIGLICGLFCQAFTLLLISLRIKWTKIALSGAREKE 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858860|emb|CAN78689.1| hypothetical protein VITISV_039558 [Vitis vinifera]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 118/170 (69%), Gaps = 23/170 (13%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           VNT  I +  +YGLSAA   +VSNELGAG  DRAK+AMAVTLK+ + +AL++ L L   H
Sbjct: 361 VNTEAIAYMIAYGLSAAASTRVSNELGAGNPDRAKHAMAVTLKISICVALVVVLLLALCH 420

Query: 63  NIWAGFFADSQEI-RNFA--------------------GVARGCGWQHLAVWVNLATFYF 101
           NIWA FF+DS  I ++FA                    GVARGCGWQH+A+++NLATFY 
Sbjct: 421 NIWASFFSDSTVIIKDFAYMTPLLVASILLDSAQGVLSGVARGCGWQHIAMYINLATFYL 480

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIA 151
           IGMP+++L  FKL L+AKGLWIGLICGL+ QA+SL  I LR  +T++ ++
Sbjct: 481 IGMPISVLLAFKLKLYAKGLWIGLICGLSCQAASLLFITLRTNWTSLKLS 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546866|ref|XP_003541843.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein ALF5-like [Glycine max]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 116/180 (64%), Gaps = 23/180 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
            NT +I +  +YGLSAA   +VSNELG+G +DRAK+AM V+LKL +LL L   LAL FGH
Sbjct: 308 TNTELIAYLITYGLSAAASTRVSNELGSGHLDRAKHAMGVSLKLSLLLGLCFVLALAFGH 367

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           NIW   F+DS +I+                       +GV RGCGWQHLA +VNLATFY 
Sbjct: 368 NIWIQMFSDSSKIKEELASLTPFLSISILLDSVQGVLSGVIRGCGWQHLAAYVNLATFYL 427

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLS 161
           IG+P++ L GFK NL  KGLWIGLICGLA Q  +L  +  R K+T +++++ R++  P S
Sbjct: 428 IGLPISGLLGFKFNLQVKGLWIGLICGLACQTGTLSFLAWRAKWTKLNVSLDRDEIQPPS 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546864|ref|XP_003541842.1| PREDICTED: MATE efflux family protein ALF5-like [Glycine max]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 110/181 (60%), Gaps = 23/181 (12%)

Query: 5   VNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           +NT  I +    GL AA   +VSNELGAG  ++AK+AM VT+KL  L +    LAL FGH
Sbjct: 320 LNTQFIAYMVPVGLGAAGSTRVSNELGAGNPEQAKHAMNVTVKLSFLFSFCFALALGFGH 379

Query: 63  NIWAGFFADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYF 101
           NIW   F+ S +I+                        GVARGCGWQH  V++NLATFY 
Sbjct: 380 NIWIQLFSGSAKIKEEFASMIPLLAISIVLDAVQGVMQGVARGCGWQHSTVYINLATFYL 439

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRKFTNVDIAVSREKEVPLS 161
           +G+P++ L GFK NLH KGLWIGLICGL  Q  +LFL +   K+T +D++  ++K+ PL 
Sbjct: 440 VGLPISCLLGFKTNLHYKGLWIGLICGLLCQVVTLFLFLRLAKWTKLDLSGDKDKDHPLV 499

Query: 162 I 162
           +
Sbjct: 500 V 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2088020	477	ALF5 "AT3G23560" [Arabidopsis	0.450	0.153	0.616	1.3e-31
TAIR|locus:2088010	469	AT3G23550 "AT3G23550" [Arabido	0.450	0.155	0.630	5.7e-31
TAIR|locus:2027834	476	AT1G73700 "AT1G73700" [Arabido	0.487	0.165	0.421	1.7e-17
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.487	0.162	0.421	1.9e-17
TAIR|locus:2040839	480	AT2G34360 "AT2G34360" [Arabido	0.450	0.152	0.460	2.1e-17
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.487	0.162	0.357	1.7e-15
TAIR|locus:2050230	483	AT2G04100 "AT2G04100" [Arabido	0.481	0.161	0.392	1.9e-15
TAIR|locus:2077725	507	TT12 "AT3G59030" [Arabidopsis	0.481	0.153	0.405	3.8e-15
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.407	0.136	0.434	4.3e-15
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.376	0.126	0.442	1.9e-14

TAIR|locus:2088020 ALF5 "AT3G23560" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +GVARGCGWQ L   +NLATFY IGMP+A   GFKL  +AKGLWIGLICG+  Q+SSL L
Sbjct:   403 SGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLL 462

Query:   139 IVLRRKFTNVDIA 151
             + + RK+T +++A
Sbjct:   463 MTIFRKWTKLNVA 475

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISS

TAIR|locus:2088010 AT3G23550 "AT3G23550" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +GVARGCGWQ LA  +NL TFY IGMP+++L GFKL LHAKGLWIGLICG+  Q++SL L
Sbjct:   395 SGVARGCGWQRLATVINLGTFYLIGMPISVLCGFKLKLHAKGLWIGLICGMFCQSASLLL 454

Query:   139 IVLRRKFTNVDIA 151
             + + RK+T +  A
Sbjct:   455 MTIFRKWTKLTAA 467

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
 Identities = 35/83 (42%), Positives = 51/83 (61%)

Query:    67 GFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLI 126
             G F D  +    +GVARGCGWQ +   VNL ++Y +G+PL LL GF  ++  +GLW+G++
Sbjct:   377 GNFLDGLQCV-LSGVARGCGWQKIGACVNLGSYYLVGVPLGLLLGFHFHIGGRGLWLGIV 435

Query:   127 CGLAAQASSLFLIVLRRKFTNVD 149
               L+ Q   L L+ +   FTN D
Sbjct:   436 TALSVQVLCLSLVTI---FTNWD 455

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 35/83 (42%), Positives = 50/83 (60%)

Query:    67 GFFADSQEIRNFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLI 126
             G F DS +    +GVARGCGWQ +   +NL ++Y +G+P  LL  F  ++  +GLW+G+I
Sbjct:   379 GNFLDSLQCV-LSGVARGCGWQKIGAIINLGSYYLVGVPSGLLLAFHFHVGGRGLWLGII 437

Query:   127 CGLAAQASSLFLIVLRRKFTNVD 149
             C L  Q   L L+ +   FTN D
Sbjct:   438 CALVVQVFGLGLVTI---FTNWD 457

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +GVARGCGWQ +  +VNL ++Y +G+P  LL GF  ++  +GLW+G+IC L  Q   L L
Sbjct:   385 SGVARGCGWQKIGAFVNLGSYYLVGVPFGLLLGFHFHVGGRGLWLGIICALIVQGVCLSL 444

Query:   139 IVLRRKFTNVDIAVSR 154
             I     FTN D  V +
Sbjct:   445 ITF---FTNWDEEVKK 457

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +GVARG GWQH+  + N+ ++Y +G+P+  +  F + L  KGLWIG++ G   Q   L L
Sbjct:   399 SGVARGTGWQHIGAYANIGSYYLVGIPVGSILCFVVKLRGKGLWIGILVGSTLQTIVLAL 458

Query:   139 IVLRRKFTN--VDIAVSREKEVPL 160
             +     FTN   ++A +R++ + +
Sbjct:   459 VTF---FTNWEQEVAKARDRVIEM 479

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 31/79 (39%), Positives = 47/79 (59%)

Query:    80 GVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLI 139
             GVARG GWQH+  W N+  +Y +G P+ L  GF  +++ KGLWIG++ G  AQ   L ++
Sbjct:   395 GVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGVVVGSTAQGIILAIV 454

Query:   140 VLRRKFTNVDIAVSREKEV 158
                  + N   A +R++ V
Sbjct:   455 TACMSW-NEQAAKARQRIV 472

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
 Identities = 32/79 (40%), Positives = 50/79 (63%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +GVA G GWQ +  +VNL T+Y IG+P+  + GFK +L   G+W G+I G+  Q  +L +
Sbjct:   415 SGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIV 474

Query:   139 IVLRRKFTN-VDIAVSREK 156
             + L+  +T+ V+ A  R K
Sbjct:   475 LTLKTNWTSEVENAAQRVK 493

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010231 "maintenance of seed dormancy" evidence=IMP

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +G+ RG GWQ +  +VN+ ++Y IG+P+ LL  F L+ + KGLW GL+ G   Q   LFL
Sbjct:   392 SGIVRGTGWQKIGAYVNITSYYVIGIPVGLLLCFHLHFNGKGLWAGLVTGSTLQTLILFL 451

Query:   139 IVLRRKFTN 147
             ++    FTN
Sbjct:   452 VI---GFTN 457

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query:    79 AGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
             +G+ARGCGWQH+  ++NL  FY  G+P+A    F ++L   GLWIG+  G   Q   L L
Sbjct:   399 SGIARGCGWQHIGAYINLGAFYLWGIPIAASLAFWIHLKGVGLWIGIQAGAVLQTLLLTL 458

Query:   139 I 139
             +
Sbjct:   459 V 459

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	1e-32
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	3e-08
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	1e-07
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-07
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	6e-07
pfam01554	161	pfam01554, MatE, MatE	7e-05
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	2e-04
PRK00187	464	PRK00187, PRK00187, multidrug efflux protein NorA;	2e-04
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	3e-04
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	4e-04

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  119 bits (301), Expect = 1e-32
 Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 23/162 (14%)

Query: 5   VNTHVITFNFSYGLSAAH--KVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGH 62
           + T  + +    G+S A   +V NELGAG   RAK A  V L L +++ +++ + L    
Sbjct: 267 LTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLR 326

Query: 63  NIWAGFFADSQEIRNFA---------------------GVARGCGWQHLAVWVNLATFYF 101
           ++WA  F   +E+                         GV RGCG Q L  +VNL  +Y 
Sbjct: 327 DVWAYLFTSDEEVIALVADLLPILALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYL 386

Query: 102 IGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143
           IG+P+ LL  F L L  KGLWIGLI GL  QA  L LI+LR 
Sbjct: 387 IGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAVILLLIILRT 428

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 24/158 (15%)

Query: 10  ITFNFSYGLSAAH--KVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAG 67
           + F    G+S A   +V   LGAG    A+ A  V L L V  A +  L L       AG
Sbjct: 276 LLFMVPLGISMAATVRVGFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAG 335

Query: 68  FFADSQEIRNFA---------------------GVARGCGWQHLAVWVNLATFYFIGMPL 106
            + +   +   A                     G  RG     +   + L +++ IG+PL
Sbjct: 336 LYTNDPAVIALAASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPL 395

Query: 107 ALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRK 144
             L  F   L A G+WIGLI GLA  A+ L L   RR 
Sbjct: 396 GYLLAFTTGLGAFGVWIGLIIGLAL-AAILLLWRFRRL 432

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 21/152 (13%)

Query: 14  FSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQ 73
           F + ++A+  V   LGAG  D A+      L+L VL   ++ L L       A  F    
Sbjct: 279 FGFSMAASTLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDP 338

Query: 74  EIRN---------------------FAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF 112
           E+                        +G  RG G     + +NL + + + +PLA L GF
Sbjct: 339 EVIELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGF 398

Query: 113 KLNLHAKGLWIGLICGLAAQASSLFLIVLRRK 144
            L L   G+W+ +      +A  L     + K
Sbjct: 399 VLGLGLTGIWLAMFVDTIVRAILLLYRFRKGK 430

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 22/142 (15%)

Query: 24  VSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFA---- 79
           V   LGAG   RA+ A  + LKL +L+AL+I L L          F    E+   A    
Sbjct: 304 VGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILL 363

Query: 80  -----------------GVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLW 122
                            GV RG G   +   ++L +++   +PLA L GF   L   G+W
Sbjct: 364 LIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGF-FFLGLAGVW 422

Query: 123 IGLICGLAAQASSLFLIVLRRK 144
           IG    L  +A  L L + R +
Sbjct: 423 IGFPLSLILRAILLLLRLRRGR 444

Length = 455

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 32/181 (17%)

Query: 5   VNTHVITFNF---------SYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIID 55
           V  H I  NF         S  ++   +V  ELGAG    A+    + L + + +AL+  
Sbjct: 274 VAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTA 333

Query: 56  LALTFGHNIWAGFFADSQEIRNFA---------------------GVARGCGWQHLAVWV 94
           + L       A  + D  E+   A                     G  RG     +  ++
Sbjct: 334 IFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFI 393

Query: 95  NLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF--LIVLRRKFTNVDIAV 152
               ++ +G+PL  +      +   G WIGLI GL A A  L   L  L+R+ + + +  
Sbjct: 394 TFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQPSAIILQR 453

Query: 153 S 153
           +
Sbjct: 454 A 454

Length = 456

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 24/123 (19%)

Query: 10  ITFNFSYGLSAAHK--VSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAG 67
           + F F  GLS A    V   LGAG   RA  A+   L L +L++L I L +         
Sbjct: 40  LIFMFLLGLSTALTTLVGQALGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILS 99

Query: 68  FFADSQEIRNFA---------------------GVARGCGWQHLAVWVNLATFYFIGMPL 106
            F   +E+   A                     G  RG G     +++NL +   + +PL
Sbjct: 100 LFTQDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLIS-LLLNIPL 158

Query: 107 ALL 109
             L
Sbjct: 159 NYL 161

The MatE domain. Length = 161

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 23/140 (16%)

Query: 9   VITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVL-LALIIDLALTFGHNIWAG 67
           V    F    + +  V   LGAG IDRA+  +     L+ L L +   LA  F   I   
Sbjct: 285 VFLPAFGLARATSTMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPI-VR 343

Query: 68  FFADSQEI---------------------RNFAGVARGCGWQHLAVWVNLATFYFIGMPL 106
            F +  E+                     +   G  RG G    A+ +++   + I +PL
Sbjct: 344 VFINDPEVIKEGADFLRIVAPSFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPL 403

Query: 107 ALLFGFKLNLHAKGLWIGLI 126
           A L  + L L   G+WI + 
Sbjct: 404 AYLLAYVLGLGVTGIWIAMA 423

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 26  NELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIRNFAGVARGC 85
             +    +DR   A A  ++L V L  +           W   F  +Q I    G  RG 
Sbjct: 338 EAIIGLFLDRNDPAFAEIVQLAVSLLAVA---------AWFELFDGTQTI--AMGAIRGL 386

Query: 86  GWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL 138
                   + LA ++ +G PLA L  F L   A G+W GL  GLA  A +L L
Sbjct: 387 KDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTL 439

Length = 464

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 24/152 (15%)

Query: 15  SYGLS--AAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADS 72
           ++GLS  AA  V   LGAG  DRA+ ++    K  ++   I+ L           FF   
Sbjct: 291 AWGLSNAAATLVGQNLGAGQPDRAEKSVWRAGKYNMVFLGIVSLVFFLFAEPLVSFFTTD 350

Query: 73  QEIRNFAGVA---------------------RGCGWQHLAVWVNLATFYFIGMPLALLFG 111
            E+   A  A                      G G       +NL  F+   +PLA L  
Sbjct: 351 PEVIAIAVEALRIISLGYIFYGYGMVLSQAFNGAGDTKTPTLINLVGFWLFQIPLAYLLA 410

Query: 112 FKLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143
             LNL  KG++I  I       +   +I+ RR
Sbjct: 411 RHLNLGPKGVFIA-IPIAETVLAIAAIILFRR 441

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 9   VITFNFSYGLSAAHKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGF 68
           V  F+ + G +    V + +GAG  D A   +  +LK+ +L++L + L L        G 
Sbjct: 276 VFLFSLAIGQATQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGL 335

Query: 69  FADSQEIRN---------------------FAGVARGCGWQHLAVWVNLATFYFIGMPLA 107
           F D  EI                         G  R  G     V + + + + I +PLA
Sbjct: 336 FTDDPEIIALGKTLLLISILLEPGRAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPLA 395

Query: 108 LLFGFKLNLHAKGLWIGLIC 127
            L G  L L   G+WI    
Sbjct: 396 YLLGIVLGLGLLGVWIAFAA 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PRK10189	478	MATE family multidrug exporter; Provisional	99.95
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.94
PRK01766	456	multidrug efflux protein; Reviewed	99.92
PRK00187	464	multidrug efflux protein NorA; Provisional	99.91
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.88
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.85
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.85
PRK10189	478	MATE family multidrug exporter; Provisional	99.84
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.84
PRK00187	464	multidrug efflux protein NorA; Provisional	99.83
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.82
PRK01766	456	multidrug efflux protein; Reviewed	99.77
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.69
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.68
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.68
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.59
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.55
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.21
PRK15099	416	O-antigen translocase; Provisional	99.17
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.04
PRK15099	416	O-antigen translocase; Provisional	98.94
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.88
KOG1347	473	consensus Uncharacterized membrane protein, predic	98.85
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.81
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.68
COG2244	480	RfbX Membrane protein involved in the export of O-	98.55
PRK10459	492	colanic acid exporter; Provisional	98.46
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	98.43
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	97.72
PRK10459	492	colanic acid exporter; Provisional	96.91
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.81
COG0728	518	MviN Uncharacterized membrane protein, putative vi	96.66
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	96.6
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	94.58
COG2244	480	RfbX Membrane protein involved in the export of O-	92.72
PF04505	82	Dispanin: Interferon-induced transmembrane protein	88.7
COG4267	467	Predicted membrane protein [Function unknown]	86.82

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.95  E-value=1.1e-26  Score=189.76  Aligned_cols=148  Identities=15%  Similarity=0.257  Sum_probs=141.4

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      +++.+++.+.+++..|+++|  +++||++||||+|++|+..+.+..+++.++.+.+++.+++++++..+|++|+|+.   
T Consensus       298 ~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~  377 (478)
T PRK10189        298 FIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVV  377 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            56789999999999999999  9999999999999999999999999999999999999999999999999999988   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL  138 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~  138 (162)
                                        +..+.+||.||++.++++++.++|++.+|+.|++.+..++|+.|+|++..+++.+++++..+
T Consensus       378 ~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~  457 (478)
T PRK10189        378 KILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYW  457 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                              67899999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHhcCchhHH
Q 035877          139 IVLRRKFTNVD  149 (162)
Q Consensus       139 ~~~~~~~~~~~  149 (162)
                      ++++++|++..
T Consensus       458 r~~~~~W~~~~  468 (478)
T PRK10189        458 RMVSGRWLWKY  468 (478)
T ss_pred             HHHcCccccCC
Confidence            99999998843

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.94  E-value=8.7e-26  Score=183.54  Aligned_cols=151  Identities=30%  Similarity=0.489  Sum_probs=144.0

Q ss_pred             CEeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH--
Q 035877            1 MIFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--   76 (162)
Q Consensus         1 ~~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--   76 (162)
                      |+++.++.++.+++++|+++|  +++||++||||+|++|+..+.+..++...+.+..++.+++++++.++|++|+|+.  
T Consensus       279 ~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~  358 (455)
T COG0534         279 YGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIAL  358 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            467889999999999999999  9999999999999999999999999999999999999999999999999999988  


Q ss_pred             -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877           77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF  137 (162)
Q Consensus        77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~  137 (162)
                                         +..+++||.||++.+++.++.++|++.+|+.|++.+.. +|..|+|+++..++.++++...
T Consensus       359 ~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~  437 (455)
T COG0534         359 AVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLL  437 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHH
Confidence                               89999999999999999999999999999999999877 9999999999999999999999


Q ss_pred             HHHHhcCchhHHHHh
Q 035877          138 LIVLRRKFTNVDIAV  152 (162)
Q Consensus       138 ~~~~~~~~~~~~~~~  152 (162)
                      +++++.+|++...++
T Consensus       438 ~~~~~~~~~~~~~~~  452 (455)
T COG0534         438 LRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHHHhhhhhhhhhc
Confidence            999999998876544

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.92  E-value=7.7e-24  Score=171.89  Aligned_cols=153  Identities=25%  Similarity=0.389  Sum_probs=141.2

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      +++.++.++.+.++.|++.|  +.+||++|+||++++|+..+.++.++..++.+.+++++.+++++.++|++|+|+.   
T Consensus       278 ~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~  357 (456)
T PRK01766        278 QIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALA  357 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            45678889999999999999  9999999999999999999999999999999999999999999999999999976   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL  138 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~  138 (162)
                                        +..+++||.||++.++..++.+.|++++|..|++.+.+++|+.|+|+++.+++.+.+++..+
T Consensus       358 ~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~  437 (456)
T PRK01766        358 SHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLL  437 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHH
Confidence                              78999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHHhcCchhHHHHhhh
Q 035877          139 IVLRRKFTNVDIAVSR  154 (162)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (162)
                      ++.+.+|+...+..+|
T Consensus       438 ~~~~~~~~~~~~~~~~  453 (456)
T PRK01766        438 RLRKLQRQPSAIILQR  453 (456)
T ss_pred             HHHHHHHHHhHHHhhh
Confidence            9888887765444443

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.91  E-value=1.3e-23  Score=171.25  Aligned_cols=145  Identities=28%  Similarity=0.406  Sum_probs=132.0

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--ch---h
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD--SQ---E   74 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~   74 (162)
                      +++.++..+.+.+..|++.|  +++||++|+||+|++++..+.++.++..++++.+++.+++++++.++|++  |+   |
T Consensus       275 ~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~  354 (464)
T PRK00187        275 QIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAE  354 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHH
Confidence            46778999999999999999  99999999999999999999999999999999999999999999999974  44   4


Q ss_pred             HH---------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q 035877           75 IR---------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQA  133 (162)
Q Consensus        75 v~---------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~  133 (162)
                      +.                     ++.+++||.||++.+++.++.++|++++|++|++.+.+++|+.|+|+++.+++.+..
T Consensus       355 v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~  434 (464)
T PRK00187        355 IVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAA  434 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHH
Confidence            44                     678999999999999999999999999999999999889999999999999999999


Q ss_pred             HHHHHHHHhcCch
Q 035877          134 SSLFLIVLRRKFT  146 (162)
Q Consensus       134 ~~~~~~~~~~~~~  146 (162)
                      +....+++.++|+
T Consensus       435 ~~~~~~~~~~~~~  447 (464)
T PRK00187        435 VALTLAFEWKTAR  447 (464)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877766554443

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.88  E-value=1.1e-21  Score=159.41  Aligned_cols=138  Identities=17%  Similarity=0.241  Sum_probs=124.7

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-chhHH--
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD-SQEIR--   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~--   76 (162)
                      +++.++..+.+++..|+++|  +++||++|+||+||+|+..+.++.+++..+++.+++++++++++..+|++ |+|+.  
T Consensus       274 ~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~  353 (453)
T PRK09575        274 AIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAE  353 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHH
Confidence            45678899999999999999  99999999999999999999999999999999999999999999999995 78876  


Q ss_pred             -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877           77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF  137 (162)
Q Consensus        77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~  137 (162)
                                         +..+++||.||++.++..++.+ +++++|+.|++...  +|+.|+|+++.+++.+..+...
T Consensus       354 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~  430 (453)
T PRK09575        354 TIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVA  430 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHH
Confidence                               6788999999999999999877 47899999888643  7999999999999999988877


Q ss_pred             HHHHh
Q 035877          138 LIVLR  142 (162)
Q Consensus       138 ~~~~~  142 (162)
                      .++++
T Consensus       431 ~~~~~  435 (453)
T PRK09575        431 PMLWR  435 (453)
T ss_pred             HHHHH
Confidence            66554

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.85  E-value=8.9e-21  Score=153.76  Aligned_cols=139  Identities=19%  Similarity=0.180  Sum_probs=118.6

Q ss_pred             CEeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH--
Q 035877            1 MIFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--   76 (162)
Q Consensus         1 ~~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--   76 (162)
                      ++++.++..+.+++.+|+++|  +++||++|+||+|++|+..+.++.++...+.+.+++.+.+++++..+|++|+|++  
T Consensus       270 ~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~  349 (441)
T PRK10367        270 NAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQL  349 (441)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            357789999999999999999  9999999999999999999999999999999999999999999999999999988  


Q ss_pred             -------------------HHhhHHhhcC---chhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q 035877           77 -------------------NFAGVARGCG---WQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQAS  134 (162)
Q Consensus        77 -------------------~~~~~l~g~g---~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~  134 (162)
                                         ++.++++|.+   |++.++..++++.|++.++.       +++|+.|+|++..+++.++++
T Consensus       350 ~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i  422 (441)
T PRK10367        350 ADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGL  422 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHH
Confidence                               1133444444   69999999999987533322       357999999999999999999


Q ss_pred             HHHHHHHhcCchh
Q 035877          135 SLFLIVLRRKFTN  147 (162)
Q Consensus       135 ~~~~~~~~~~~~~  147 (162)
                      .+..+++++ |++
T Consensus       423 ~~~~~~~~~-~~~  434 (441)
T PRK10367        423 SLAAIWRRH-WRN  434 (441)
T ss_pred             HHHHHHHHH-Hhc
Confidence            888765544 744

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.85  E-value=3.1e-20  Score=150.60  Aligned_cols=139  Identities=15%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----
Q 035877            3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR----   76 (162)
Q Consensus         3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~----   76 (162)
                      ++.++..+.+.+..+++.+  +++||++|+||+|++++..++++.+++..+++..++...+.+++..++++|+|+.    
T Consensus        50 l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~  129 (441)
T PRK10367         50 VGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQAR  129 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4567788888888999998  9999999999999999999999999999999999888999999999999999987    


Q ss_pred             -----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH
Q 035877           77 -----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLI  139 (162)
Q Consensus        77 -----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~  139 (162)
                                       ++.+++||.||++.+++.++++. ++++++++++.+.+++|+.|+|+++.+++.+..++..++
T Consensus       130 ~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~  208 (441)
T PRK10367        130 RFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLM  208 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence                             78999999999999999999996 889999999999889999999999999999998877666


Q ss_pred             HHh
Q 035877          140 VLR  142 (162)
Q Consensus       140 ~~~  142 (162)
                      +.+
T Consensus       209 ~~~  211 (441)
T PRK10367        209 VRK  211 (441)
T ss_pred             HHH
Confidence            654

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.84  E-value=8e-20  Score=149.56  Aligned_cols=140  Identities=16%  Similarity=0.240  Sum_probs=127.0

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cchhHH-
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA--DSQEIR-   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~v~-   76 (162)
                      +++.++.++.+.+..|++++  +++||++|+||+|++++..++++.+++.++++.+++.+.+++++..+|+  +|+|+. 
T Consensus        68 ~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~  147 (478)
T PRK10189         68 GLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKA  147 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHH
Confidence            46778888999999999999  9999999999999999999999999999999999999999999999995  688877 


Q ss_pred             --------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHH
Q 035877           77 --------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQ  132 (162)
Q Consensus        77 --------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~  132 (162)
                                          ++++++||.||++.++..++.+ +++++++++.+.+.    +++|+.|+|+++.+++.+.
T Consensus       148 ~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~  226 (478)
T PRK10189        148 LALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIG  226 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence                                6889999999999999999987 48999999999875    4899999999999999999


Q ss_pred             HHHHHHHHHh
Q 035877          133 ASSLFLIVLR  142 (162)
Q Consensus       133 ~~~~~~~~~~  142 (162)
                      .++..+++.+
T Consensus       227 ~~~~~~~~~~  236 (478)
T PRK10189        227 AVAIIWVLMI  236 (478)
T ss_pred             HHHHHHHHHh
Confidence            8877665543

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.84  E-value=7.8e-20  Score=148.75  Aligned_cols=143  Identities=22%  Similarity=0.307  Sum_probs=133.9

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      ++++++..+.+.+..|++.|  +++||++|+||++++++...+++++++.++++..++.+.+++++..++++++|+.   
T Consensus        56 ~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a  135 (455)
T COG0534          56 GLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELA  135 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHH
Confidence            45678889999999999999  9999999999999999999999999999999999999999999999999988766   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh-hC-CchhHHHHHHHHHHHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK-LN-LHAKGLWIGLICGLAAQASSL  136 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~-~~-~g~~G~~~~~~~~~~~~~~~~  136 (162)
                                        ++.+++|+.||+|.+|+++++++ ++|+.+++++.+. ++ ||+.|..+|+.+++.+..+..
T Consensus       136 ~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~  214 (455)
T COG0534         136 AEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLL  214 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence                              89999999999999999999996 9999999999998 57 999999999999999999999


Q ss_pred             HHHHHhcCc
Q 035877          137 FLIVLRRKF  145 (162)
Q Consensus       137 ~~~~~~~~~  145 (162)
                      ..++.+.+.
T Consensus       215 ~~~~~~~~~  223 (455)
T COG0534         215 LIYLLRKKR  223 (455)
T ss_pred             HHHHHhcch
Confidence            888877663

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.83  E-value=1e-19  Score=148.33  Aligned_cols=140  Identities=21%  Similarity=0.147  Sum_probs=123.9

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      +++.++..+.+.+..|++.|  +++||++|+||+|++++..++++.+++.++++..++.+ +.+++..+|++|+|+.   
T Consensus        49 ~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~  127 (464)
T PRK00187         49 GLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAA  127 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHH
Confidence            35567888888999999999  99999999999999999999999999999998887765 6789999999999988   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQAS  134 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~~~  134 (162)
                                        .+++++||.||++.+++.++++. +++++++|++.+.    +++|+.|+++++.+++....+
T Consensus       128 ~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~  206 (464)
T PRK00187        128 MQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMAL  206 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHH
Confidence                              78999999999999999999996 7799999998875    369999999999999988887


Q ss_pred             HHHHHHHhc
Q 035877          135 SLFLIVLRR  143 (162)
Q Consensus       135 ~~~~~~~~~  143 (162)
                      .+..+++++
T Consensus       207 ~~~~~~~~~  215 (464)
T PRK00187        207 ALALYIRRH  215 (464)
T ss_pred             HHHHHHHhc
Confidence            766666543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.82  E-value=5.4e-19  Score=143.74  Aligned_cols=140  Identities=16%  Similarity=0.086  Sum_probs=126.8

Q ss_pred             eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----
Q 035877            3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR----   76 (162)
Q Consensus         3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~----   76 (162)
                      ++.++..+.+.+..+++.+  +++||++|+||+|++++..++++.+++.++++.+++.+.+.+++..+|+.|+|+.    
T Consensus        53 ~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~  132 (453)
T PRK09575         53 MAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELAL  132 (453)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence            3456777777788888887  9999999999999999999999999999999999999999999999999888776    


Q ss_pred             -----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH
Q 035877           77 -----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLI  139 (162)
Q Consensus        77 -----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~  139 (162)
                                       .+.+++|+.||++.+++.++.+. ++++++++++.+.+++|+.|+|+++.+++.+..++..++
T Consensus       133 ~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~  211 (453)
T PRK09575        133 QYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGY  211 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence                             67789999999999999999995 899999999999889999999999999999999887776


Q ss_pred             HHhc
Q 035877          140 VLRR  143 (162)
Q Consensus       140 ~~~~  143 (162)
                      ++++
T Consensus       212 ~~~~  215 (453)
T PRK09575        212 FFSS  215 (453)
T ss_pred             HHCC
Confidence            6544

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.77  E-value=1.5e-17  Score=135.12  Aligned_cols=140  Identities=18%  Similarity=0.215  Sum_probs=124.4

Q ss_pred             eehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH-----
Q 035877            4 SVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-----   76 (162)
Q Consensus         4 ~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-----   76 (162)
                      +.++..+.+.+..|++.+  +.+||++|+||+|++++..++++.+++..+++.+++.+.+++++..+|+.|+|+.     
T Consensus        53 ~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~  132 (456)
T PRK01766         53 GTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVG  132 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHH
Confidence            345566677788888888  9999999999999999999999999999999999999999999999999998865     


Q ss_pred             ----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHHHHHH
Q 035877           77 ----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQASSL  136 (162)
Q Consensus        77 ----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~~~~~  136 (162)
                                      ++.+++||.||++.+++.++++. ++++++++++.+.    +++|+.|+++++.+++.+..++.
T Consensus       133 yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~  211 (456)
T PRK01766        133 YLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAM  211 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHH
Confidence                            68899999999999999999996 7899999998864    57899999999999999999988


Q ss_pred             HHHHHhcC
Q 035877          137 FLIVLRRK  144 (162)
Q Consensus       137 ~~~~~~~~  144 (162)
                      .++.++.+
T Consensus       212 ~~~~~~~~  219 (456)
T PRK01766        212 LIYIKRAR  219 (456)
T ss_pred             HHHHHhCh
Confidence            77765543

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.69  E-value=4e-15  Score=116.25  Aligned_cols=139  Identities=21%  Similarity=0.270  Sum_probs=124.1

Q ss_pred             eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----
Q 035877            3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR----   76 (162)
Q Consensus         3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~----   76 (162)
                      ++.++..+...+..|++++  +.+++++|++|+|++++..+.++.+.+..+++++++.+++++++..+++.|+|..    
T Consensus        33 ~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  112 (342)
T TIGR00797        33 LGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQ  112 (342)
T ss_pred             HhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHH
Confidence            4567788888899999999  9999999999999999999999999999999999999999999999998666543    


Q ss_pred             -----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHH-hhC-CchhHHHHHHHHHHHHHHHHHH
Q 035877           77 -----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-KLN-LHAKGLWIGLICGLAAQASSLF  137 (162)
Q Consensus        77 -----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~-~~~-~g~~G~~~~~~~~~~~~~~~~~  137 (162)
                                       +..+++|+.||++.+++.++.+. ++++++++.+.+ ..+ +|..|+++++.+++.+..++..
T Consensus       113 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~  191 (342)
T TIGR00797       113 DYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLL  191 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence                             77889999999999999999986 788899888887 567 8899999999999999988877


Q ss_pred             HHHHh
Q 035877          138 LIVLR  142 (162)
Q Consensus       138 ~~~~~  142 (162)
                      ++.++
T Consensus       192 ~~~~~  196 (342)
T TIGR00797       192 YYIKK  196 (342)
T ss_pred             HHHHh
Confidence            66654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.68  E-value=1.5e-17  Score=117.05  Aligned_cols=108  Identities=28%  Similarity=0.541  Sum_probs=102.1

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      +++.++..+...+..|+++|  +.+||++|+||+|++++..++++.+++.++++.+++.+++++++..+|++|+|+.   
T Consensus        32 ~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~  111 (162)
T PF01554_consen   32 GIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIA  111 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHH
T ss_pred             HHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHh
Confidence            45678888999999999999  9999999999999999999999999999999999999999999999999998766   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALL  109 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~  109 (162)
                                        +..+++||.||++.+++.++.+.|++++|++|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  112 RQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence                              788999999999999999999999999999875

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.68  E-value=3e-18  Score=139.64  Aligned_cols=154  Identities=31%  Similarity=0.540  Sum_probs=143.7

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      +|+.+.....++.+.|++.|  +.+++.+|+||++++|.....++..++..+...+...+..++.+..+|++|+|+.   
T Consensus       288 sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~v  367 (473)
T KOG1347|consen  288 SICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLV  367 (473)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            56778889999999999999  9999999999999999999999999999999999999999999999999999987   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFL  138 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~  138 (162)
                                        +..|..||.|+++...++++.+++++++|...++.+..++|..|+|.++..+..+....+..
T Consensus       368 a~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~  447 (473)
T KOG1347|consen  368 ADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAI  447 (473)
T ss_pred             HHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHH
Confidence                              78888999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHhcCchhHHHHhhhh
Q 035877          139 IVLRRKFTNVDIAVSRE  155 (162)
Q Consensus       139 ~~~~~~~~~~~~~~~~~  155 (162)
                      ...+.||+++..+....
T Consensus       448 ~~~~tdW~~~~~~a~~~  464 (473)
T KOG1347|consen  448 VTARTDWKNQAEKAFAR  464 (473)
T ss_pred             heeeccHHHHHHHHHHH
Confidence            88999999987765443

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.59  E-value=7.9e-14  Score=113.82  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH--------
Q 035877            7 THVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR--------   76 (162)
Q Consensus         7 i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~--------   76 (162)
                      +..+...+..+++.+  |.+|++.|+||+|+.++..++++.++...+.+.++....++|++..+|.++++..        
T Consensus       280 i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~i~~~  359 (488)
T TIGR02900       280 LLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAP  359 (488)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            444455556778888  9999999999999999999999999999999999999999999999887655533        


Q ss_pred             ---------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877           77 ---------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR  143 (162)
Q Consensus        77 ---------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~  143 (162)
                               +..+++++.||++.+++.++.+. ++++++.+.+...+.+|..|+|+++.+++.+..++..++.+|.
T Consensus       360 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       360 SFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     66789999999999999999986 8999998888766789999999999999999998887776553

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.55  E-value=1.5e-13  Score=112.57  Aligned_cols=136  Identities=15%  Similarity=0.174  Sum_probs=115.0

Q ss_pred             ehhhHHHHH-HHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc----chhHH-
Q 035877            5 VNTHVITFN-FSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD----SQEIR-   76 (162)
Q Consensus         5 ~~i~~~~~~-~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~-   76 (162)
                      .++..+... +..+++.+  |.+||+.|+||+|++|+..++++.....++.+.++.++.+++++..+|..    |+|.. 
T Consensus       265 ~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~  344 (502)
T TIGR01695       265 NRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTV  344 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence            344444443 45677877  99999999999999999999999999999999999999999999999865    33332 


Q ss_pred             --------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q 035877           77 --------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSL  136 (162)
Q Consensus        77 --------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~  136 (162)
                                          +..+.+++.||++.+++.++.+. ++++|+++++.  +.+|..|+|+++.+++.+..++.
T Consensus       345 ~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~  421 (502)
T TIGR01695       345 MTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLI--FPLGLVGIALATSAASMVSSVLL  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHH
Confidence                                67889999999999999999985 78999988886  44799999999999999999887


Q ss_pred             HHHHHhc
Q 035877          137 FLIVLRR  143 (162)
Q Consensus       137 ~~~~~~~  143 (162)
                      .++.++.
T Consensus       422 ~~~~~~~  428 (502)
T TIGR01695       422 YLMLNRR  428 (502)
T ss_pred             HHHHHHh
Confidence            7766654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.21  E-value=4e-10  Score=92.04  Aligned_cols=137  Identities=14%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             hhhHHHHHH-HHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH------
Q 035877            6 NTHVITFNF-SYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR------   76 (162)
Q Consensus         6 ~i~~~~~~~-~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~------   76 (162)
                      ++..+...+ ..|++++  ..++|+.|++|+|++++..+.+.++.+..+++.+++.+.+.+++...+.+|++..      
T Consensus        43 ~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~  122 (488)
T TIGR02900        43 PIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVI  122 (488)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHH
Confidence            344444443 3588888  8899999999999999999999999999999999999999999988776665543      


Q ss_pred             -----------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHH-----hhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877           77 -----------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-----KLNLHAKGLWIGLICGLAAQASSLFLIV  140 (162)
Q Consensus        77 -----------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~-----~~~~g~~G~~~~~~~~~~~~~~~~~~~~  140 (162)
                                 +..+++||.+|.+..+..+..+. ++++.+...+.+     ..++++.|..+++.++..+..+....++
T Consensus       123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~  201 (488)
T TIGR02900       123 CPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQ-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFF  201 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       67888999999999999998885 555544433332     2345677888888888888888766555


Q ss_pred             Hhc
Q 035877          141 LRR  143 (162)
Q Consensus       141 ~~~  143 (162)
                      ++.
T Consensus       202 ~~~  204 (488)
T TIGR02900       202 KRK  204 (488)
T ss_pred             HHH
Confidence            443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.17  E-value=7.3e-10  Score=89.22  Aligned_cols=123  Identities=11%  Similarity=0.119  Sum_probs=99.4

Q ss_pred             HHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH----------------
Q 035877           15 SYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR----------------   76 (162)
Q Consensus        15 ~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~----------------   76 (162)
                      ..|++++  ..++|+  ++|+|++++....++.+.+..+.+.+++.+.+.+++...+..|+|..                
T Consensus        55 ~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (416)
T PRK15099         55 GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWA  132 (416)
T ss_pred             cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Confidence            4444444  667877  78999999999999999999999999999999999998887776643                


Q ss_pred             -HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877           77 -NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR  142 (162)
Q Consensus        77 -~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~  142 (162)
                       ...+++||.||++.++..++.+. ++++.+ +++.+.. .|+.|..+++.+++.+..+...+++.+
T Consensus       133 ~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        133 NLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence             57899999999999999998886 677655 3433322 399999999999999988776665544

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.04  E-value=2e-08  Score=82.04  Aligned_cols=135  Identities=15%  Similarity=0.220  Sum_probs=113.0

Q ss_pred             hhhHHHH-HHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----cchhHH-
Q 035877            6 NTHVITF-NFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA-----DSQEIR-   76 (162)
Q Consensus         6 ~i~~~~~-~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~-----~~~~v~-   76 (162)
                      ++..+.. .+..++++.  |..|++.-+||.++.++..++++...+.+.++.++....+++++.+++-     +.+++. 
T Consensus       241 ~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~  320 (451)
T PF03023_consen  241 RLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQL  320 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHH
Confidence            3444433 345566666  9999999999999999999999999999999999999999999988864     223333 


Q ss_pred             -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877           77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF  137 (162)
Q Consensus        77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~  137 (162)
                                         .+...+.+.+|+|.++..+..+. ++++.+++++.  +.+|..|+.+++.++.++..+...
T Consensus       321 ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~  397 (451)
T PF03023_consen  321 TASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATSLSAIISALLLY  397 (451)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               78889999999999999999995 79988886666  568999999999999999999888


Q ss_pred             HHHHhc
Q 035877          138 LIVLRR  143 (162)
Q Consensus       138 ~~~~~~  143 (162)
                      ..++|+
T Consensus       398 ~~l~r~  403 (451)
T PF03023_consen  398 ILLRRR  403 (451)
T ss_pred             HHHHHH
Confidence            777665

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK15099 O-antigen translocase; Provisional

Probab=98.94  E-value=3.2e-08  Score=79.74  Aligned_cols=133  Identities=9%  Similarity=-0.037  Sum_probs=102.6

Q ss_pred             eeehhhH-HHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccch--hHH-
Q 035877            3 FSVNTHV-ITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQ--EIR-   76 (162)
Q Consensus         3 i~~~i~~-~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~--~v~-   76 (162)
                      ++.++.. +...+..+++++  |.++++   +|+||.++..++........+.+.++..++++|++..++..|+  +.. 
T Consensus       256 ~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~  332 (416)
T PRK15099        256 GVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRD  332 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3455645 457889999999  999995   7889999999999999999999999999999999999987654  322 


Q ss_pred             ----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877           77 ----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIV  140 (162)
Q Consensus        77 ----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~  140 (162)
                                      .+...+-..++++.....++.. .++++|+++++.  +.+|..|+++++.+++.+.........
T Consensus       333 ~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~  409 (416)
T PRK15099        333 LFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVF  409 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1222233445666556655554 578999998877  557999999999999999998776554


Q ss_pred             H
Q 035877          141 L  141 (162)
Q Consensus       141 ~  141 (162)
                      .
T Consensus       410 ~  410 (416)
T PRK15099        410 L  410 (416)
T ss_pred             H
Confidence            4

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.88  E-value=1.3e-07  Score=77.94  Aligned_cols=127  Identities=17%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             HHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----cchhHH----------
Q 035877           14 FSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA-----DSQEIR----------   76 (162)
Q Consensus        14 ~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~-----~~~~v~----------   76 (162)
                      +..++++.  |..|++..++|.++.++...+++.++..++++.++.++.+++++.+++-     ++.|+.          
T Consensus       284 fgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~  363 (518)
T COG0728         284 FGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYS  363 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence            44445555  9999999999999999999999999999999999999999999998853     122222          


Q ss_pred             ----------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877           77 ----------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR  143 (162)
Q Consensus        77 ----------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~  143 (162)
                                ++...+.+.+|+|.|+++.+++. ++++.++..+.  +.++..|+..++..+.++.+..+.+.++++
T Consensus       364 ~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~  437 (518)
T COG0728         364 LGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR  437 (518)
T ss_pred             HhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      88999999999999999999995 89998884444  557888999999999888888777766654

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=98.85  E-value=5e-08  Score=80.06  Aligned_cols=132  Identities=17%  Similarity=0.175  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH------------
Q 035877           11 TFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR------------   76 (162)
Q Consensus        11 ~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~------------   76 (162)
                      -+.+..|++.+  ++++|++|+++++......+++...-...+.+... ++.+.+++...+++|+++.            
T Consensus        77 ~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip  155 (473)
T KOG1347|consen   77 GVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIP  155 (473)
T ss_pred             chHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcc
Confidence            46678888889  99999999999999999999999999988888885 6668899999999999987            


Q ss_pred             ---------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 035877           77 ---------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRRK  144 (162)
Q Consensus        77 ---------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~~  144 (162)
                               ...-.+|+.++.....+...+.. ++++|++|++.+.+++|..|...+..++++........+.....
T Consensus       156 ~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~  231 (473)
T KOG1347|consen  156 GLFSYAVSFPLAKFLQAQSITLPLLVIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG  231 (473)
T ss_pred             hhhhhHHHHHHHHHHHhccCchHHHHHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence                     67788999999999999999995 89999999999999999999999999999999998887765543

>TIGR01695 mviN integral membrane protein MviN

Probab=98.81  E-value=1.2e-07  Score=77.93  Aligned_cols=119  Identities=20%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             HHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhccccc--cchhHH---------------------
Q 035877           22 HKVSNELGAGMI-DRAKNAMAVTLKLVVLLAL-IIDLALTFGHNIWAGFFA--DSQEIR---------------------   76 (162)
Q Consensus        22 ~~is~~~Ga~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~lf~--~~~~v~---------------------   76 (162)
                      ..+++..|+++. |++++....+.......+. +..++.+++.+++..++.  .|+|..                     
T Consensus        62 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~  141 (502)
T TIGR01695        62 AFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAA  141 (502)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666555 5888888887776665554 457778889999999883  344431                     


Q ss_pred             HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHH--HHHHHHHHHHHHHHHHHHHhc
Q 035877           77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLW--IGLICGLAAQASSLFLIVLRR  143 (162)
Q Consensus        77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~--~~~~~~~~~~~~~~~~~~~~~  143 (162)
                      +..+++|+.||.+.+++.+++.+ ++.+..  .+...+++|..|..  +++.++..+..+....++++.
T Consensus       142 ~~~~~l~~~~~~~~~~~~~i~~~-i~~i~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  207 (502)
T TIGR01695       142 VFGGILNARKRFFIPSFSPILFN-IGVILS--LLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA  207 (502)
T ss_pred             HHHHHHhccCeeHHHHHHHHHHH-HHHHHH--HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            78899999999999999999987 444432  33344678999988  999999998888776665543

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.68  E-value=7.5e-08  Score=75.19  Aligned_cols=74  Identities=31%  Similarity=0.479  Sum_probs=69.1

Q ss_pred             eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH
Q 035877            3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR   76 (162)
Q Consensus         3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~   76 (162)
                      ++.++..+.+.+..+++.+  |.+++++|+||+|++++..++++...+..+.+.++.++++++++.++|++|+|+.
T Consensus       256 ~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~  331 (342)
T TIGR00797       256 IALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVL  331 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            4567778888999999999  9999999999999999999999999999999999999999999999999999976

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.55  E-value=6e-06  Score=67.58  Aligned_cols=120  Identities=17%  Similarity=0.154  Sum_probs=99.8

Q ss_pred             eeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cchh----H
Q 035877            3 FSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA-DSQE----I   75 (162)
Q Consensus         3 i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~-~~~~----v   75 (162)
                      .+.++......+..+++.+  |.+++...+||.++.++..+++......++.+..+....+++++..++. ++.+    +
T Consensus       254 ~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~  333 (480)
T COG2244         254 AAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPI  333 (480)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHH
Confidence            3456667777788888888  9999999999999999999999999999999999999999988777654 4321    1


Q ss_pred             H--------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHH
Q 035877           76 R--------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGL  125 (162)
Q Consensus        76 ~--------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~  125 (162)
                      .              .....+++.|+++..+..+.++. ++++.+.+.+.  +..|..|...++
T Consensus       334 l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li--~~~g~~g~~~a~  394 (480)
T COG2244         334 LQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI--PRFGLIGAAIAT  394 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH--HhhhhhhHHHHH
Confidence            1              67999999999999999999885 67777777766  556788888888

>PRK10459 colanic acid exporter; Provisional

Probab=98.46  E-value=1.4e-05  Score=65.78  Aligned_cols=114  Identities=11%  Similarity=0.127  Sum_probs=91.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-ccc-hhHH-----------------HHhhHH
Q 035877           22 HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFF-ADS-QEIR-----------------NFAGVA   82 (162)
Q Consensus        22 ~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf-~~~-~~v~-----------------~~~~~l   82 (162)
                      |..++.  ++|.++.++..++........+++.++.+.++.|++..++ +++ .+..                 ....++
T Consensus       270 P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l  347 (492)
T PRK10459        270 PVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLL  347 (492)
T ss_pred             HHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777775  6789999999999999999999998888888888877664 443 1111                 556789


Q ss_pred             hhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877           83 RGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIV  140 (162)
Q Consensus        83 ~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~  140 (162)
                      ++.||+|..+..+++.+ .+.+|..+.+.  +.+|..|+.+++.+++.+......++.
T Consensus       348 ~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~  402 (492)
T PRK10459        348 LAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLM  402 (492)
T ss_pred             HHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988875 67777766555  457999999999999998888777666

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=98.43  E-value=1.9e-05  Score=64.60  Aligned_cols=136  Identities=15%  Similarity=0.066  Sum_probs=105.5

Q ss_pred             ehhhHHHHHHHH--HHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--chhHH--
Q 035877            5 VNTHVITFNFSY--GLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFAD--SQEIR--   76 (162)
Q Consensus         5 ~~i~~~~~~~~~--gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~v~--   76 (162)
                      .++-.+.+....  +++++  |...+.. ++++|++++..+...........+++++.+++++++..++..  |+|..  
T Consensus        18 ~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~l   96 (451)
T PF03023_consen   18 FTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIEL   96 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHH
Confidence            344445554443  46666  8888888 999999999999999999999999999999999999999863  44543  


Q ss_pred             -------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHH
Q 035877           77 -------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLH---AKGLWIGLICGLAAQAS  134 (162)
Q Consensus        77 -------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g---~~G~~~~~~~~~~~~~~  134 (162)
                                         ++.+++|+.+|-..+....++.+ +..+...++  .....|   +.++.+|+.++..++.+
T Consensus        97 a~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~--~~~~~~~~~i~~la~g~~~g~~~~~l  173 (451)
T PF03023_consen   97 AVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLL--LSNSWGQENIYALAWGVLIGAIIQFL  173 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHH--HHHhcCchHHHHHHHHHHHHHHHHHH
Confidence                               89999999999999999988887 333322222  223355   88999999999999998


Q ss_pred             HHHHHHHhcC
Q 035877          135 SLFLIVLRRK  144 (162)
Q Consensus       135 ~~~~~~~~~~  144 (162)
                      ......++..
T Consensus       174 ~~l~~~~~~~  183 (451)
T PF03023_consen  174 IQLPYLRRFG  183 (451)
T ss_pred             HHHHHHHHCC
Confidence            8877776654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=97.72  E-value=0.00035  Score=47.94  Aligned_cols=64  Identities=9%  Similarity=0.066  Sum_probs=56.5

Q ss_pred             HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877           77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR  143 (162)
Q Consensus        77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~  143 (162)
                      ....++++.||++..++.++.+. ++++++++.+.  +++|..|+.+++.+++........++.+|.
T Consensus        17 ~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~   80 (146)
T PF14667_consen   17 PLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRKK   80 (146)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999995 89999999885  778999999999999999988877776664

>PRK10459 colanic acid exporter; Provisional

Probab=96.91  E-value=0.037  Score=45.53  Aligned_cols=97  Identities=12%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH-----------------HHhhHHhhcCchhHHHHHHHHHHH
Q 035877           38 NAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-----------------NFAGVARGCGWQHLAVWVNLATFY  100 (162)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-----------------~~~~~l~g~g~~~~~~~~~~~~~~  100 (162)
                      +......++.+..+.+..++.+++.+++..+|.++ +..                 ...+.+|+..|.+.....+.... 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~-  152 (492)
T PRK10459         75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-ELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAV-  152 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHH-
Confidence            33455666777778777788888888888776543 333                 46777788788887777777775 


Q ss_pred             HhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 035877          101 FIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLF  137 (162)
Q Consensus       101 ~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~  137 (162)
                      ++.......+.+ .+.|..+..++..++..+..+...
T Consensus       153 i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~  188 (492)
T PRK10459        153 VAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFG  188 (492)
T ss_pred             HHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHH
Confidence            344444444433 568888888888888887776543

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.81  E-value=0.12  Score=38.05  Aligned_cols=106  Identities=17%  Similarity=0.264  Sum_probs=66.0

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhH--H--------------HHhhHHhhcCchhHHH
Q 035877           29 GAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEI--R--------------NFAGVARGCGWQHLAV   92 (162)
Q Consensus        29 Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v--~--------------~~~~~l~g~g~~~~~~   92 (162)
                      .++++++.++............+++..++......    ++.+++..  .              ...+.+++.+|.+...
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (251)
T PF13440_consen   49 AARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY----FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYA  124 (251)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            44667777777777766666655555443222222    33332211  1              6789999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035877           93 WVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIV  140 (162)
Q Consensus        93 ~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~  140 (162)
                      ..+.... +........+.+ .+.+..+..++..++..+..+......
T Consensus       125 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (251)
T PF13440_consen  125 LIDIVRS-LLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLL  170 (251)
T ss_pred             HHHHHHH-HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9888885 333333333333 333788888888888888777655533

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=96.66  E-value=0.11  Score=43.56  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             HHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cccccc---hhH-H--------------
Q 035877           18 LSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWA-GFFADS---QEI-R--------------   76 (162)
Q Consensus        18 l~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~~---~~v-~--------------   76 (162)
                      ++++  |.-.++..++..|++++..............+++++..++.+++. .++...   ++- .              
T Consensus        66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~  145 (518)
T COG0728          66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF  145 (518)
T ss_pred             HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            4566  888888888888899999888887888888889999999999999 444332   221 1              


Q ss_pred             -----HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 035877           77 -----NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLRR  143 (162)
Q Consensus        77 -----~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~~  143 (162)
                           .+.++++..++-..+.+.-++-+. .-+.....+....+....+..+++.++-..+..+.....++.
T Consensus       146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv-~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~  216 (518)
T COG0728         146 ISLSALFGAILNSRNRFFIPAFAPVLLNV-SVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA  216 (518)
T ss_pred             HHHHHHHHHHHhccCeechhhhhHHHHHH-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 789999999999999888877762 222233333332222467888889999999999988877765

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=96.60  E-value=0.15  Score=37.82  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=45.5

Q ss_pred             HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877           77 NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR  142 (162)
Q Consensus        77 ~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~  142 (162)
                      ...+++|+.++.+.....++... +........+.. .+.+..+...+..++..+..++...+.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (273)
T PF01943_consen  127 VFSGLLQGLQRFKYIAISNIISS-LLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR  190 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888899999998888888875 444434333333 33447888888888888887777666654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=94.58  E-value=1.2  Score=37.87  Aligned_cols=109  Identities=15%  Similarity=0.059  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----cch---hHH--------------HHhhHHhhcCchhHH
Q 035877           33 IDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFA----DSQ---EIR--------------NFAGVARGCGWQHLA   91 (162)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~---~v~--------------~~~~~l~g~g~~~~~   91 (162)
                      .+++.+.....+.+...+|.++..+.....+.+..++.    +|+   ++.              +..++.++..+++..
T Consensus       338 ~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l  417 (549)
T PF04506_consen  338 LKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQL  417 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHH
Confidence            35677788888888888888888877777777877764    122   222              778888888887765


Q ss_pred             HHHHHHHH--HHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877           92 VWVNLATF--YFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR  142 (162)
Q Consensus        92 ~~~~~~~~--~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~  142 (162)
                      ...+-...  .++.+..+|++... ++|..|.-+|-.+.+.++.+.+..++.+
T Consensus       418 ~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~  469 (549)
T PF04506_consen  418 DRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR  469 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433321  24555667777766 8999999999999999999987776654

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=92.72  E-value=4.4  Score=33.16  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             hhHHHHHHH-HHHHHH--HHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH------
Q 035877            7 THVITFNFS-YGLSAA--HKVSNELGAGMIDRAKNA-MAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR------   76 (162)
Q Consensus         7 i~~~~~~~~-~gl~~a--~~is~~~Ga~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~------   76 (162)
                      +..++..+. .|+..+  -.++++...++....+.. ...+.......+.+.........+.       +++..      
T Consensus        51 ~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  123 (480)
T COG2244          51 IIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPVLALLLRIL  123 (480)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ChhhHHHHHHH
Confidence            333433333 566666  446666666666666666 5666666555555555544444332       22211      


Q ss_pred             -----------HHhhHHhhcCchhHHHHHHHHH
Q 035877           77 -----------NFAGVARGCGWQHLAVWVNLAT   98 (162)
Q Consensus        77 -----------~~~~~l~g~g~~~~~~~~~~~~   98 (162)
                                 ...+.+|+.++.+......+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (480)
T COG2244         124 SLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS  156 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence                       7889999999999888874333

>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression []

Probab=88.70  E-value=4.2  Score=25.35  Aligned_cols=41  Identities=24%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             HHHHHHH---HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 035877           15 SYGLSAA---HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIID   55 (162)
Q Consensus        15 ~~gl~~a---~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~   55 (162)
                      ++|+-.=   ..+-..+-+||+++|++..+++-.++.+..++..
T Consensus        32 PlGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~   75 (82)
T PF04505_consen   32 PLGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI   75 (82)
T ss_pred             hHHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4555544   8888999999999999999999888765544433

; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane

>COG4267 Predicted membrane protein [Function unknown]

Probab=86.82  E-value=16  Score=29.87  Aligned_cols=124  Identities=20%  Similarity=0.144  Sum_probs=81.1

Q ss_pred             HHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchh---HH-----HHhhHHhh
Q 035877           15 SYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQE---IR-----NFAGVARG   84 (162)
Q Consensus        15 ~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~---v~-----~~~~~l~g   84 (162)
                      .-|++..  =.+|+.+=++|+++......-...+....+..++.+.++..++..-.+---.-   +.     +....+.|
T Consensus        77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~~~~si~yk~l~~~~FV~m~~~Wi~~iFlS~  156 (467)
T COG4267          77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVNNQYSIVYKILACALFVGMSLVWILMIFLSG  156 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444  67888899999999998888887777777777765333332222111100000   00     56677888


Q ss_pred             cCchhHHHHHHHHHHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 035877           85 CGWQHLAVWVNLATFYFIGMPLALLFGFKLNLHAKGLWIGLICGLAAQASSLFLIVLR  142 (162)
Q Consensus        85 ~g~~~~~~~~~~~~~~~i~i~l~~~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~~  142 (162)
                      +.|-+......++++ .+.+.++.++-.   .++.|.-.+..++..........+..+
T Consensus       157 lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr  210 (467)
T COG4267         157 LKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR  210 (467)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            888888888877775 666666555443   478899999999888887776665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	5e-16

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 36/166 (21%), Positives = 56/166 (33%), Gaps = 28/166 (16%)

Query: 6   NTHVITFNFSYGLSAAH--KVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHN 63
           N   + F F   + AA   +V ++LG      A  A  V L   +  A I  L       
Sbjct: 281 NFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFRE 340

Query: 64  IWAGFFADSQEIRNFA---------------------GVARGCGWQHLAVWVNLATFYFI 102
             A  + ++Q +   A                     G  RG             +++ +
Sbjct: 341 QIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVL 400

Query: 103 GMPLALLFGF-----KLNLHAKGLWIGLICGLAAQASSLFLIVLRR 143
           G+P   + G      +  L AKG W+G I GL+A A  L   +   
Sbjct: 401 GLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.81
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.54

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.81  E-value=7.8e-20  Score=146.11  Aligned_cols=143  Identities=25%  Similarity=0.337  Sum_probs=129.9

Q ss_pred             EeeehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH---
Q 035877            2 IFSVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR---   76 (162)
Q Consensus         2 ~i~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~---   76 (162)
                      +++.++..+.+.+..+++++  |.+|+++|+||+|++++..+++...+..++++.++.++++++++..+|++|+|+.   
T Consensus       277 ~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  356 (460)
T 3mkt_A          277 QVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA  356 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            35678889999999999999  9999999999999999999999999999999999999999999999999887643   


Q ss_pred             ------------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hC-CchhHHHHHHHHHHHHHH
Q 035877           77 ------------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LN-LHAKGLWIGLICGLAAQA  133 (162)
Q Consensus        77 ------------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~-~g~~G~~~~~~~~~~~~~  133 (162)
                                        +..++++|.||++.+++.++++.|++++|+++++...    ++ +|..|+|+++.+++.+..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~  436 (460)
T 3mkt_A          357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAA  436 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHH
Confidence                              6789999999999999999999889999999999987    67 999999999999999998


Q ss_pred             HHHHHHHHhcC
Q 035877          134 SSLFLIVLRRK  144 (162)
Q Consensus       134 ~~~~~~~~~~~  144 (162)
                      ++..+++++..
T Consensus       437 ~~~~~~~~~~~  447 (460)
T 3mkt_A          437 LMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHSSSSSSC
T ss_pred             HHHHHHHHHHH
Confidence            87666555443

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.54  E-value=2.6e-14  Score=113.99  Aligned_cols=139  Identities=17%  Similarity=0.217  Sum_probs=120.8

Q ss_pred             eehhhHHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH-----
Q 035877            4 SVNTHVITFNFSYGLSAA--HKVSNELGAGMIDRAKNAMAVTLKLVVLLALIIDLALTFGHNIWAGFFADSQEIR-----   76 (162)
Q Consensus         4 ~~~i~~~~~~~~~gl~~a--~~is~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~-----   76 (162)
                      +.++..+...+..|++.+  +.++|++|++|+|++++..+.++.+....+++..++ +.+.+++..+++.|+|+.     
T Consensus        53 ~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~  131 (460)
T 3mkt_A           53 AASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVG  131 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHH
Confidence            445666667778888888  999999999999999999999999999999998765 788899999998887654     


Q ss_pred             ----------------HHhhHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHh----hCCchhHHHHHHHHHHHHHHHHH
Q 035877           77 ----------------NFAGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFK----LNLHAKGLWIGLICGLAAQASSL  136 (162)
Q Consensus        77 ----------------~~~~~l~g~g~~~~~~~~~~~~~~~i~i~l~~~~~~~----~~~g~~G~~~~~~~~~~~~~~~~  136 (162)
                                      ...+++||.||++.++..++++. ++++++++++.+.    |++|+.|+.+++.+++.+..++.
T Consensus       132 ~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~  210 (460)
T 3mkt_A          132 YMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLL  210 (460)
T ss_dssp             HHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHH
Confidence                            67889999999999999999996 7899999999875    47999999999999999999887


Q ss_pred             HHHHHhcC
Q 035877          137 FLIVLRRK  144 (162)
Q Consensus       137 ~~~~~~~~  144 (162)
                      ..++++.+
T Consensus       211 ~~~~~~~~  218 (460)
T 3mkt_A          211 LFYIVTSK  218 (460)
T ss_dssp             HHHHHTCS
T ss_pred             HHHHHhCc
Confidence            77766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00