Citrus Sinensis ID: 035878

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MASQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccccccEEEEEccccccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEccccccccccccHHHcccccccEEEccccEEcccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHccccccccccccccccccccccEEEEEcccccEEEEEEccccccccccHHHHcccccccEcccEEEEcccccccccccHHHccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccccccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEccccEEEEEccHHHHHcccccEEEccccEEEccccccc
Coil and Loop (DISEMBL)
masqtkypSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQswvipasnssnsttpspcrwsgivcndagsvteinlantglagtlhdldfssfpnllrfdvyeldvsrnnmtggidprlfpddknqpmtgllglknfllqdnmlsgripeeigncKLLTLLALdgnflsgpipsslgnlsDLAVLAVASnqlsgeipanigtlskLTDLHLFINKlsglppqvckggklinftasfnhfsgpiptslkscSSLYRVRLesneltgdleqdfgiypnltyidlsynrlqgevspkwgkcqkltllglagnsiggkipaeiGSLSQLVVLDlssnqlsgeipaqignltelstlslngndisgpiPEEIGALLNldsldlsmnrlsgpipkqigelrDLRSLslsqnnlngtipfqignlvgLQDLLDLsynsltgeipaQLEKLTSLQSMnlshnnlsgeipASLSSMLSLVAVNLSynnlegplpdgs
Flexible Loop (DISEMBL)
MASQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSwvipasnssnsttpspcRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNeltgdleqdfGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYnnlegplpdgs
Low Complexity Region (SEG)
MASQTKYPSlayvaalavllCFCKASSLTETEALLKWKETLVNQSIVQSWVIPAsnssnsttpspCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGslsqlvvldlssnqlsGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAllnldsldlsmnrlsGPIPKQIGELRDLRslslsqnnlnGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPaslssmlslvavnlsYNNLEGPLPDGS
Disordered region (IsUnstruct)
*******PSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVIPA**********PCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFP*****PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM**********IGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL**************************MLSLVAVNLSY***********
Disordered Region (DISOPRED)
******Y*SLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD**
Disordered Region (DISEMBL)
MASQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVIPA**********PCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS
Disordered Region (DISPRO)
**SQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVIP********TPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.764	0.362	0.426	1e-86
Q9LP24	1120	Probable leucine-rich rep	no	no	0.683	0.302	0.482	3e-81
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.802	0.317	0.380	2e-68
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.764	0.344	0.419	9e-65
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.721	0.286	0.420	7e-64
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.754	0.339	0.416	1e-63
O22938	890	Leucine-rich repeat recep	no	no	0.933	0.520	0.359	3e-63
O49318	1124	Probable leucine-rich rep	no	no	0.762	0.336	0.394	3e-61
Q9LHP4	1141	Receptor-like protein kin	no	no	0.760	0.330	0.368	4e-58
C0LGV1	1135	LRR receptor-like serine/	no	no	0.949	0.414	0.33	6e-58

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  320 bits (821), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 252/438 (57%), Gaps = 59/438 (13%)

Query: 108 DVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLT 167
           ++ EL + RNN+TG I P  F + KN  +  +         +N LSG IP EIGN   L 
Sbjct: 239 NLRELCLDRNNLTGKI-PSSFGNLKNVTLLNMF--------ENQLSGEIPPEIGNMTALD 289

Query: 168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG- 226
            L+L  N L+GPIPS+LGN+  LAVL +  NQL+G IP  +G +  + DL +  NKL+G 
Sbjct: 290 TLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGP 349

Query: 227 ------------------------------------------------LPPQVCKGGKLI 238
                                                           LP  +C+GGKL 
Sbjct: 350 VPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLE 409

Query: 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE 298
           N T   NHF GP+P SL+ C SL RVR + N  +GD+ + FG+YP L +IDLS N   G+
Sbjct: 410 NLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQ 469

Query: 299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELS 358
           +S  W + QKL    L+ NSI G IP EI +++QL  LDLSSN+++GE+P  I N+  +S
Sbjct: 470 LSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRIS 529

Query: 359 TLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418
            L LNGN +SG IP  I  L NL+ LDLS NR S  IP  +  L  L  ++LS+N+L+ T
Sbjct: 530 KLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQT 589

Query: 419 IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSL 478
           IP  +  L  LQ +LDLSYN L GEI +Q   L +L+ ++LSHNNLSG+IP S   ML+L
Sbjct: 590 IPEGLTKLSQLQ-MLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLAL 648

Query: 479 VAVNLSYNNLEGPLPDGS 496
             V++S+NNL+GP+PD +
Sbjct: 649 THVDVSHNNLQGPIPDNA 666

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  302 bits (774), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/342 (48%), Positives = 216/342 (63%), Gaps = 3/342 (0%)

Query: 154 GRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSK 213
           G IP+E+GN + +  L L  N L+G +P S GN + L  L +  N LSG IP  +   S 
Sbjct: 404 GVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSH 463

Query: 214 LTDLHLFINKLSGLPPQ-VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT 272
           LT L L  N  +G  P+ VCKG KL N +  +NH  GPIP SL+ C SL R R   N+ T
Sbjct: 464 LTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFT 523

Query: 273 GDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQ 332
           GD+ + FGIYP+L +ID S+N+  GE+S  W K  KL  L ++ N+I G IP EI +++Q
Sbjct: 524 GDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQ 583

Query: 333 LVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392
           LV LDLS+N L GE+P  IGNLT LS L LNGN +SG +P  +  L NL+SLDLS N  S
Sbjct: 584 LVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFS 643

Query: 393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT 452
             IP+       L  ++LS+N  +G+IP ++  L  L   LDLS+N L GEIP+QL  L 
Sbjct: 644 SEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQ-LDLSHNQLDGEIPSQLSSLQ 701

Query: 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
           SL  ++LSHNNLSG IP +   M++L  V++S N LEGPLPD
Sbjct: 702 SLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPD 743

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 176/463 (38%), Positives = 241/463 (52%), Gaps = 65/463 (14%)

Query: 79  VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTG 138
           +T + L N  L GTL     S+  NL  F +Y      NN+ G +   +          G
Sbjct: 387 LTNLYLNNNSLEGTLSS-SISNLTNLQEFTLY-----HNNLEGKVPKEI----------G 430

Query: 139 LLG-LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
            LG L+   L +N  SG +P EIGNC  L  +   GN LSG IPSS+G L DL  L +  
Sbjct: 431 FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRE 490

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ--------------------------- 230
           N+L G IPA++G   ++T + L  N+LSG  P                            
Sbjct: 491 NELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLI 550

Query: 231 ---------------------VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269
                                +C     ++F  + N F G IP  L   ++L R+RL  N
Sbjct: 551 NLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKN 610

Query: 270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGS 329
           + TG + + FG    L+ +D+S N L G +  + G C+KLT + L  N + G IP  +G 
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query: 330 LSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389
           L  L  L LSSN+  G +P +I +LT + TL L+GN ++G IP+EIG L  L++L+L  N
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEEN 730

Query: 390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE 449
           +LSGP+P  IG+L  L  L LS+N L G IP +IG L  LQ  LDLSYN+ TG IP+ + 
Sbjct: 731 QLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTIS 790

Query: 450 KLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 492
            L  L+S++LSHN L GE+P  +  M SL  +NLSYNNLEG L
Sbjct: 791 TLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL 833

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  248 bits (633), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 163/389 (41%), Positives = 225/389 (57%), Gaps = 10/389 (2%)

Query: 107 FDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLL 166
            D  E+D S N +TG I P+ F          +L LK   L +N+L G IP E+G   LL
Sbjct: 307 IDAAEIDFSENQLTGFI-PKEFGH--------ILNLKLLHLFENILLGPIPRELGELTLL 357

Query: 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG 226
             L L  N L+G IP  L  L  L  L +  NQL G+IP  IG  S  + L +  N LSG
Sbjct: 358 EKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSG 417

Query: 227 -LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
            +P   C+   LI  +   N  SG IP  LK+C SL ++ L  N+LTG L  +     NL
Sbjct: 418 PIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNL 477

Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG 345
           T ++L  N L G +S   GK + L  L LA N+  G+IP EIG+L+++V  ++SSNQL+G
Sbjct: 478 TALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTG 537

Query: 346 EIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL 405
            IP ++G+   +  L L+GN  SG I +E+G L+ L+ L LS NRL+G IP   G+L  L
Sbjct: 538 HIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRL 597

Query: 406 RSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465
             L L  N L+  IP ++G L  LQ  L++S+N+L+G IP  L  L  L+ + L+ N LS
Sbjct: 598 MELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLS 657

Query: 466 GEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
           GEIPAS+ +++SL+  N+S NNL G +PD
Sbjct: 658 GEIPASIGNLMSLLICNISNNNLVGTVPD 686

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  245 bits (625), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 151/359 (42%), Positives = 216/359 (60%), Gaps = 1/359 (0%)

Query: 135 PMTGLLGLKNFL-LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVL 193
           P  G L   N L L+ N L G +P  +GNC  L +L L  N LSG IPSS G L  L  L
Sbjct: 474 PSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQL 533

Query: 194 AVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT 253
            + +N L G +P ++ +L  LT ++L  N+L+G    +C     ++F  + N F   IP 
Sbjct: 534 MLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPL 593

Query: 254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLG 313
            L +  +L R+RL  N+LTG +    G    L+ +D+S N L G +  +   C+KLT + 
Sbjct: 594 ELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHID 653

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
           L  N + G IP  +G LSQL  L LSSNQ    +P ++ N T+L  LSL+GN ++G IP+
Sbjct: 654 LNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQ 713

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
           EIG L  L+ L+L  N+ SG +P+ +G+L  L  L LS+N+L G IP +IG L  LQ  L
Sbjct: 714 EIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSAL 773

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 492
           DLSYN+ TG+IP+ +  L+ L++++LSHN L+GE+P S+  M SL  +N+S+NNL G L
Sbjct: 774 DLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  244 bits (623), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 222/384 (57%), Gaps = 10/384 (2%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
           E+D S N +TG I   L           + GL+   L +N L+G IP E+   K L+ L 
Sbjct: 317 EIDFSENALTGEIPLEL---------GNIEGLELLYLFENQLTGTIPVELSTLKNLSKLD 367

Query: 171 LDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPP 229
           L  N L+GPIP     L  L +L +  N LSG IP  +G  S L  L +  N LSG +P 
Sbjct: 368 LSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPS 427

Query: 230 QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID 289
            +C    +I      N+ SG IPT + +C +L ++RL  N L G    +     N+T I+
Sbjct: 428 YLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIE 487

Query: 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA 349
           L  NR +G +  + G C  L  L LA N   G++P EIG LSQL  L++SSN+L+GE+P+
Sbjct: 488 LGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPS 547

Query: 350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS 409
           +I N   L  L +  N+ SG +P E+G+L  L+ L LS N LSG IP  +G L  L  L 
Sbjct: 548 EIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQ 607

Query: 410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
           +  N  NG+IP ++G+L GLQ  L+LSYN LTGEIP +L  L  L+ + L++NNLSGEIP
Sbjct: 608 MGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIP 667

Query: 470 ASLSSMLSLVAVNLSYNNLEGPLP 493
           +S +++ SL+  N SYN+L GP+P
Sbjct: 668 SSFANLSSLLGYNFSYNSLTGPIP 691

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 257/504 (50%), Gaps = 41/504 (8%)

Query: 12  YVAALAVLLCFCKASSLTETEALLKWKETLVNQSI-VQSWVIPASNSSNSTTPSPCRWSG 70
           +  ++ +++ F   S L E +   +     +N+ + V  W      SSN T    C W G
Sbjct: 4   WCMSILLIVGFLSKSELCEAQLSDEATLVAINRELGVPGW------SSNGT--DYCTWVG 55

Query: 71  IVCNDAGSVTEI-NLANTGLAG---------TLHDLDFS----------SFPNLLRFDVY 110
           + C    S  E+ +L+   L G         +L  LD S          SF NL   +  
Sbjct: 56  LKCGVNNSFVEMLDLSGLQLRGNVTLISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEF- 114

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
            LD+S N   G I P  F          L GL+ F + +N+L G IP+E+   + L    
Sbjct: 115 -LDLSLNRFVGAI-PVEFGK--------LRGLRAFNISNNLLVGEIPDELKVLERLEEFQ 164

Query: 171 LDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPP 229
           + GN L+G IP  +GNLS L V     N L GEIP  +G +S+L  L+L  N+L G +P 
Sbjct: 165 VSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPNGLGLVSELELLNLHSNQLEGKIPK 224

Query: 230 QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID 289
            + + GKL     + N  +G +P ++  CS L  +R+ +NEL G + +  G    LTY +
Sbjct: 225 GIFEKGKLKVLVLTQNRLTGELPEAVGICSGLSSIRIGNNELVGVIPRTIGNISGLTYFE 284

Query: 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA 349
              N L GE+  ++ KC  LTLL LA N   G IP E+G L  L  L LS N L GEIP 
Sbjct: 285 ADKNNLSGEIVAEFSKCSNLTLLNLAANGFAGTIPTELGQLINLQELILSGNSLFGEIPK 344

Query: 350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS 409
                  L+ L L+ N ++G IP+E+ ++  L  L L  N + G IP +IG    L  L 
Sbjct: 345 SFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQ 404

Query: 410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
           L +N L GTIP +IG +  LQ  L+LS+N L G +P +L KL  L S+++S+N L+G IP
Sbjct: 405 LGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDKLVSLDVSNNLLTGSIP 464

Query: 470 ASLSSMLSLVAVNLSYNNLEGPLP 493
             L  M+SL+ VN S N L GP+P
Sbjct: 465 PLLKGMMSLIEVNFSNNLLNGPVP 488

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  236 bits (602), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 210/388 (54%), Gaps = 10/388 (2%)

Query: 108 DVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLT 167
            V E+D S N ++G I   L         + +  L+   L  N L+G IP E+   + L 
Sbjct: 326 KVMEIDFSENLLSGEIPVEL---------SKISELRLLYLFQNKLTGIIPNELSKLRNLA 376

Query: 168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG- 226
            L L  N L+GPIP    NL+ +  L +  N LSG IP  +G  S L  +    N+LSG 
Sbjct: 377 KLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGK 436

Query: 227 LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT 286
           +PP +C+   LI      N   G IP  +  C SL ++R+  N LTG    +     NL+
Sbjct: 437 IPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLS 496

Query: 287 YIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGE 346
            I+L  NR  G + P+ G CQKL  L LA N     +P EI  LS LV  ++SSN L+G 
Sbjct: 497 AIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGP 556

Query: 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406
           IP++I N   L  L L+ N   G +P E+G+L  L+ L LS NR SG IP  IG L  L 
Sbjct: 557 IPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLT 616

Query: 407 SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
            L +  N  +G+IP Q+G L  LQ  ++LSYN  +GEIP ++  L  L  ++L++N+LSG
Sbjct: 617 ELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSG 676

Query: 467 EIPASLSSMLSLVAVNLSYNNLEGPLPD 494
           EIP +  ++ SL+  N SYNNL G LP 
Sbjct: 677 EIPTTFENLSSLLGCNFSYNNLTGQLPH 704

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  226 bits (575), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 152/412 (36%), Positives = 224/412 (54%), Gaps = 35/412 (8%)

Query: 108 DVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLT 167
           ++ +L +  N+++G I PR         +  L  L+   L  N L G IPEEIGNC  L 
Sbjct: 275 ELVDLFLYENSLSGSI-PR--------EIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLK 325

Query: 168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL 227
           ++ L  N LSG IPSS+G LS L    ++ N+ SG IP  I   S L  L L  N++SGL
Sbjct: 326 MIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGL 385

Query: 228 -PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE---------- 276
            P ++    KL  F A  N   G IP  L  C+ L  + L  N LTG +           
Sbjct: 386 IPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLT 445

Query: 277 --------------QDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK 322
                         Q+ G   +L  + L +NR+ GE+    G  +K+  L  + N + GK
Sbjct: 446 KLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGK 505

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLD 382
           +P EIGS S+L ++DLS+N L G +P  + +L+ L  L ++ N  SG IP  +G L++L+
Sbjct: 506 VPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLN 565

Query: 383 SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442
            L LS N  SG IP  +G    L+ L L  N L+G IP ++G++  L+  L+LS N LTG
Sbjct: 566 KLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTG 625

Query: 443 EIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
           +IP+++  L  L  ++LSHN L G++ A L+++ +LV++N+SYN+  G LPD
Sbjct: 626 KIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPD 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  225 bits (574), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 198/600 (33%), Positives = 278/600 (46%), Gaps = 129/600 (21%)

Query: 12  YVAALAVLLCF---CKASSLTETEALLKWKETLVNQ--SIVQSWVIPASNSSNSTTPSPC 66
           +   L++ L F     ++S  E  AL+ W  +  +   S+   W        N +   PC
Sbjct: 18  FSITLSLFLAFFISSTSASTNEVSALISWLHSSNSPPPSVFSGW--------NPSDSDPC 69

Query: 67  RWSGIVC--NDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRF----------------D 108
           +W  I C  +D   VTEIN+ +  LA      + SSF +L +                 D
Sbjct: 70  QWPYITCSSSDNKLVTEINVVSVQLALPFPP-NISSFTSLQKLVISNTNLTGAISSEIGD 128

Query: 109 VYEL---DVSRNNMTGGIDPRLFPDDKNQPMT----GLLG-----------LKNFLLQDN 150
             EL   D+S N++ G I   L      Q +     GL G           LKN  + DN
Sbjct: 129 CSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDN 188

Query: 151 M-------------------------LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLG 185
                                     LSG+IPEEIGNC+ L +L L    +SG +P SLG
Sbjct: 189 YLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLG 248

Query: 186 NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA--- 242
            LS L  L+V S  LSGEIP  +G  S+L +L L+ N LSG  P+  + GKL N      
Sbjct: 249 QLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPK--ELGKLQNLEKMLL 306

Query: 243 ------------------------SFNHFSGPIPTS------------------------ 254
                                   S N+FSG IP S                        
Sbjct: 307 WQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSI 366

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           L +C+ L + ++++N+++G +  + G+   L       N+L+G +  +   CQ L  L L
Sbjct: 367 LSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDL 426

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
           + N + G +PA +  L  L  L L SN +SG IP +IGN T L  L L  N I+G IP+ 
Sbjct: 427 SQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKG 486

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           IG L NL  LDLS N LSGP+P +I   R L+ L+LS N L G +P  + +L  LQ +LD
Sbjct: 487 IGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQ-VLD 545

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
           +S N LTG+IP  L  L SL  + LS N+ +GEIP+SL    +L  ++LS NN+ G +P+
Sbjct: 546 VSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPE 605

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
224074641	949	predicted protein [Populus trichocarpa]	0.991	0.518	0.588	1e-173
255539801	949	receptor protein kinase, putative [Ricin	0.955	0.499	0.597	1e-167
356544283	944	PREDICTED: probable LRR receptor-like se	0.985	0.518	0.517	1e-149
356544279	945	PREDICTED: probable LRR receptor-like se	0.985	0.517	0.529	1e-149
449460868	956	PREDICTED: probable LRR receptor-like se	0.975	0.506	0.533	1e-148
449521547	756	PREDICTED: probable LRR receptor-like se	0.975	0.640	0.533	1e-147
449515301	961	PREDICTED: probable LRR receptor-like se	0.991	0.511	0.480	1e-132
449460870	961	PREDICTED: probable LRR receptor-like se	0.991	0.511	0.478	1e-132
449488689	630	PREDICTED: probable leucine-rich repeat	0.991	0.780	0.487	1e-124
449451952	630	PREDICTED: probable leucine-rich repeat	0.991	0.780	0.487	1e-124

>gi|224074641|ref|XP_002304404.1| predicted protein [Populus trichocarpa] gi|222841836|gb|EEE79383.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 333/566 (58%), Positives = 397/566 (70%), Gaps = 74/566 (13%)

Query: 3   SQTKYPSLAYVAALAVLLCFCKASSLT----ETEALLKWKETLVNQSIVQSWVIPASNSS 58
           ++  + SLA +    VLL FC  +SL     E EALL+WK++L NQSI+QSWV PA+  +
Sbjct: 2   ARGSFVSLAILIDWIVLLLFCCKASLASNAAEAEALLRWKDSLGNQSILQSWVAPAN--A 59

Query: 59  NSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDV--------- 109
           NS+TPSPC+W GI C+DAG+VT+INL N GL GTL  LDFSS  NLLR D+         
Sbjct: 60  NSSTPSPCQWRGITCDDAGNVTQINLPNVGLTGTLQYLDFSSLTNLLRLDLRENQLTGTI 119

Query: 110 ----------------------------------YELDVSRNNMTGGIDPRLFPDDKNQP 135
                                             YELD SRNN+TG IDPRLFPD     
Sbjct: 120 PSSIGTLYKLQYLDLATNFLYGTLPLSLANLTQAYELDFSRNNITGIIDPRLFPDGSAAN 179

Query: 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
            TGL+ LKNFLLQ   L GRIPEEIGNCK L+LLALD N   GPIPSSLGN S+L VL +
Sbjct: 180 KTGLVSLKNFLLQTTGLGGRIPEEIGNCKFLSLLALDENRFHGPIPSSLGNSSELTVLRL 239

Query: 196 ASNQLSGEIPANIGTLSKLTDLHLFINKLSG-------------------------LPPQ 230
           ++N LSG IP NIGTLSKLTDL L  N+LSG                         LP Q
Sbjct: 240 SNNLLSGNIPPNIGTLSKLTDLRLLTNQLSGFVPAELGNLSSLTVLHLAENNFTGHLPQQ 299

Query: 231 VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL 290
           VC+GGKL+NF+A+FN+FSGPIP SLK+C +LYRVRLE N+L+G LEQDFG+YPNLTYIDL
Sbjct: 300 VCQGGKLVNFSAAFNNFSGPIPASLKNCHTLYRVRLEHNQLSGFLEQDFGVYPNLTYIDL 359

Query: 291 SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ 350
           S+NR++GE+SPKWG+C+KLT+L +AGN +GGKIP E+  L+QL V+DLSSNQ+ GE+PAQ
Sbjct: 360 SFNRVRGELSPKWGECKKLTVLRVAGNLLGGKIPDEVVLLNQLRVIDLSSNQIFGELPAQ 419

Query: 351 IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSL 410
           +G L+ L  L+L  N +SG +P  I  L +L++LDLS+N LSGPIP QIGE   LR LSL
Sbjct: 420 LGKLSNLLVLNLKDNMLSGQVPVGIDGLSSLENLDLSLNMLSGPIPYQIGECSKLRFLSL 479

Query: 411 SQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA 470
            +N LNGTIP+QIGNLVGL DLLDL YN L+G IP+QL KLTSL  +NLSHNNLSG IPA
Sbjct: 480 GRNRLNGTIPYQIGNLVGLHDLLDLGYNLLSGGIPSQLAKLTSLAQLNLSHNNLSGSIPA 539

Query: 471 SLSSMLSLVAVNLSYNNLEGPLPDGS 496
           SLS+MLSLVAVN SYNNLEGPLPD S
Sbjct: 540 SLSNMLSLVAVNFSYNNLEGPLPDSS 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539801|ref|XP_002510965.1| receptor protein kinase, putative [Ricinus communis] gi|223550080|gb|EEF51567.1| receptor protein kinase, putative [Ricinus communis]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 327/547 (59%), Positives = 392/547 (71%), Gaps = 73/547 (13%)

Query: 18  VLLCFCKASSLTETEAL--LKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCND 75
           VLL  C AS     EAL  LKWK +L NQ I+QSW++ +S  +NS+  + C+W GI C+D
Sbjct: 19  VLLSSCTASFAPNPEALALLKWKASLANQLILQSWLL-SSEIANSSAVAHCKWRGIACDD 77

Query: 76  AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFD--------------------------- 108
           AGSVTEINLA TGL GTL +LDFSSFPNLLR D                           
Sbjct: 78  AGSVTEINLAYTGLTGTLDNLDFSSFPNLLRLDLKVNQLTGTIPSNIGILSKLQFLDLST 137

Query: 109 ----------------VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
                           VYELD SRNN+TG +DPRLFPD   +  TGL+GL+ FLLQ   L
Sbjct: 138 NNLHSTLPLSLANLTQVYELDFSRNNITGVLDPRLFPDSAGK--TGLVGLRKFLLQTTEL 195

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
            GRIPEEIGN K L+LLALD N+  GPIP S+GNLS+L VL ++SN+LSG IP  IGTL+
Sbjct: 196 GGRIPEEIGNLKNLSLLALDENYFHGPIPPSIGNLSELTVLRLSSNRLSGNIPPGIGTLN 255

Query: 213 KLTDLHLFINKLSG-------------------------LPPQVCKGGKLINFTASFNHF 247
           KLTDL LF N+LSG                         LP QVCKGGKL+NFTA+FN+F
Sbjct: 256 KLTDLRLFTNQLSGMVPPELGNLSALTVLHLSENSFTGHLPQQVCKGGKLVNFTAAFNNF 315

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ 307
           SGPIP SLK+C +LYRVRLE+N+LTG L QDFG+YPNLTYIDLS+N+L+GE+  KWG+C+
Sbjct: 316 SGPIPVSLKNCRTLYRVRLENNQLTGILHQDFGVYPNLTYIDLSFNKLRGELPSKWGECR 375

Query: 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDI 367
            LTLL +AGN IGGKI  +I  L+QLVVLDLSSNQ+SGE+PAQ+G L++L  LSL GN +
Sbjct: 376 NLTLLRIAGNMIGGKIAVQISQLNQLVVLDLSSNQISGEMPAQLGKLSKLLFLSLKGNRL 435

Query: 368 SGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLV 427
           SG +P EIG L +L SLDLSMN LSGPIP QIG+   L+ LSL +N LNGTIP+QIGNLV
Sbjct: 436 SGQVPVEIGELSDLQSLDLSMNMLSGPIPYQIGDCSRLQLLSLGKNKLNGTIPYQIGNLV 495

Query: 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
            LQ+LLDLSYN LTG+IP+QL KLTSL+ +NLSHNNLSG +PASLS+MLSL+A+NLSYN+
Sbjct: 496 ALQNLLDLSYNFLTGDIPSQLGKLTSLEQLNLSHNNLSGSVPASLSNMLSLLAINLSYNS 555

Query: 488 LEGPLPD 494
           L+GPLPD
Sbjct: 556 LQGPLPD 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544283|ref|XP_003540583.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/564 (51%), Positives = 378/564 (67%), Gaps = 75/564 (13%)

Query: 1   MASQTKYPSLAYVAALAVLLC-FCKASSLTETEALLKWKETLVNQSIVQSWVIPASNSSN 59
           M +   Y  L  +A L + L  F   S+ T+ +ALL+WK++L  QSI+ SWVI    +S 
Sbjct: 1   MTNHACYSCL--LARLVLFLALFQGTSAQTQAQALLRWKQSLPAQSILDSWVI----NST 54

Query: 60  STTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFD----------- 108
           +TT +PC W GI C+  G+VT INLA TGLAGTL +L+ S FPNLLR D           
Sbjct: 55  ATTLTPCSWRGITCDSQGTVTIINLAYTGLAGTLLNLNLSVFPNLLRLDLKENNLTGHIP 114

Query: 109 --------------------------------VYELDVSRNNMTGGIDPRLFPDDKNQPM 136
                                           V+ELD+SRN++TG +DPRLFPD+ ++P 
Sbjct: 115 QNIGVLSKLQFLDLSTNFLNGTLPLSIANLTQVFELDLSRNDITGILDPRLFPDESDRPQ 174

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
           +GL+G++N L QD +L GRIP EIGN + LTLLALD N   GPIPSSLGN + L++L ++
Sbjct: 175 SGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDANNFFGPIPSSLGNCTHLSILRMS 234

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSG-------------------------LPPQV 231
            NQLSG IP +IG L+ LTD+   IN L+G                         LPPQV
Sbjct: 235 QNQLSGPIPPSIGNLTNLTDVRFQINNLNGTVPRELGNLSSLIVLHLAENNLVGELPPQV 294

Query: 232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLS 291
           CK G+L+NF+A++N F+GPIP SL++C +LYRVRLE N LTG  +QDFG+YPNLTY+D S
Sbjct: 295 CKSGRLVNFSAAYNSFTGPIPRSLRNCPALYRVRLEYNRLTGYADQDFGVYPNLTYMDFS 354

Query: 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI 351
           YNR++G++S  WG C+ L  L +AGN + G IP EI  L QL  LDLSSNQ+SGEIP QI
Sbjct: 355 YNRVEGDLSANWGACKNLQYLNMAGNGVSGNIPGEIFQLDQLRELDLSSNQISGEIPPQI 414

Query: 352 GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS 411
            N + L  LSL+ N +SG +P +IG L NL SLD+SMN L GPIP QIG++ +L++L++S
Sbjct: 415 VNSSNLYELSLSDNKLSGMVPADIGKLSNLRSLDISMNMLLGPIPDQIGDIYNLQNLNMS 474

Query: 412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471
            NN NGTIP+Q+GNL  LQD LDLSYNSL+G+IP+ L KL++L S+N+SHNNLSG IP S
Sbjct: 475 NNNFNGTIPYQVGNLASLQDFLDLSYNSLSGQIPSDLGKLSNLISLNISHNNLSGSIPDS 534

Query: 472 LSSMLSLVAVNLSYNNLEGPLPDG 495
           LS M+SL A+NLSYNNLEGP+P+G
Sbjct: 535 LSEMVSLSAINLSYNNLEGPVPEG 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544279|ref|XP_003540581.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 298/563 (52%), Positives = 378/563 (67%), Gaps = 74/563 (13%)

Query: 1   MASQTKYPSLAYVAALAVLLCFCKASSLTETEA--LLKWKETLVNQSIVQSWVIPASNSS 58
           M + T Y   A  A L ++L      ++ +T+A  LL+WK++L +QSI+ SW+I    +S
Sbjct: 1   MNNHTCYACFAIPATLLLVLMVLFQGTVAQTQAQTLLRWKQSLPHQSILDSWII----NS 56

Query: 59  NSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFD---------- 108
            +TT SPC W GI C+  G+VT INLA TGLAGTL +L+ S FPNLLR D          
Sbjct: 57  TATTLSPCSWRGITCDSKGTVTIINLAYTGLAGTLLNLNLSVFPNLLRLDLKENNLTGHI 116

Query: 109 ---------------------------------VYELDVSRNNMTGGIDPRLFPDDKNQP 135
                                            V+ELD+SRNN+TG +DPRLFPD  ++P
Sbjct: 117 PQNIGVLSKLQFLDLSTNFLNGTLPLSIANLTQVFELDLSRNNITGTLDPRLFPDGSDRP 176

Query: 136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
            +GL+G++N L QD +L GRIP EIGN + LTLLALDGN   GPIPSSLGN + L++L +
Sbjct: 177 QSGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNNFFGPIPSSLGNCTHLSILRM 236

Query: 196 ASNQLSGEIPANIGTLSKLTDLHLFINKLSG-------------------------LPPQ 230
           + NQLSG IP +I  L+ LTD+ LF N L+G                         LPPQ
Sbjct: 237 SENQLSGPIPPSIAKLTNLTDVRLFKNYLNGTVPQEFGNFSSLIVLHLAENNFVGELPPQ 296

Query: 231 VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL 290
           VCK GKL+NF+A++N F+GPIP SL++C +LYRVRLE N+LTG  +QDFG+YPNLTY+DL
Sbjct: 297 VCKSGKLVNFSAAYNSFTGPIPISLRNCPALYRVRLEYNQLTGYADQDFGVYPNLTYMDL 356

Query: 291 SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ 350
           SYNR++G++S  WG C+ L +L +AGN I G IP EI  L QL  LDLSSNQ+SG+IP+Q
Sbjct: 357 SYNRVEGDLSTNWGACKNLQVLNMAGNEISGYIPGEIFQLDQLHKLDLSSNQISGDIPSQ 416

Query: 351 IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSL 410
           IGN   L  L+L+ N +SG IP EIG L NL SLDLSMN+L GPIP QIG++ DL++L+L
Sbjct: 417 IGNSFNLYELNLSDNKLSGIIPAEIGNLSNLHSLDLSMNKLLGPIPNQIGDISDLQNLNL 476

Query: 411 SQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA 470
           S N+LNGTIP+QIGNL  LQ  LDLSYNSL+GEIP  L KL++L S+N+SHNNLSG IP 
Sbjct: 477 SNNDLNGTIPYQIGNLRDLQYFLDLSYNSLSGEIPTDLGKLSNLISLNMSHNNLSGSIPH 536

Query: 471 SLSSMLSLVAVNLSYNNLEGPLP 493
           SLS M SL  +NLSYNNLEG +P
Sbjct: 537 SLSEMFSLSTINLSYNNLEGMVP 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460868|ref|XP_004148166.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cucumis sativus]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 297/557 (53%), Positives = 366/557 (65%), Gaps = 73/557 (13%)

Query: 9   SLAYVAALAVLLCFCKA---SSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSP 65
           S  Y   L  LL F      +  TE EALLKWKE+L  QS++ SWVI ++++S+ + P  
Sbjct: 15  SFTYPVFLTFLLLFSNEPINAIPTEVEALLKWKESLPKQSLLDSWVISSNSTSSVSNP-- 72

Query: 66  CRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFD----------------- 108
           C+W GI CN+  SV +I L NTGL GTL  L+FSS PNLLR D                 
Sbjct: 73  CQWRGISCNNQSSVIQIKLDNTGLIGTLDHLNFSSLPNLLRLDLKINNLTGVIPPSIGVL 132

Query: 109 --------------------------VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGL 142
                                     V+ELDVSRN++ G +DPRLFPD      TGL  L
Sbjct: 133 SKLQFLDLSTNSLNSTLPLSLANLTEVFELDVSRNSIHGSLDPRLFPDGSGNSRTGLKSL 192

Query: 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG 202
           +NFLLQD ML GR+PEEIGN K L L+A D +  SGPIP S+GNLS+L +L +  N  +G
Sbjct: 193 RNFLLQDTMLEGRVPEEIGNVKSLNLIAFDRSQFSGPIPQSIGNLSNLNILRLNDNHFTG 252

Query: 203 EIPANIGTLSKLTDLHLFINKLSG-------------------------LPPQVCKGGKL 237
           EIP +I  L  LTDL LFIN+LSG                         LPP +CKGGKL
Sbjct: 253 EIPRSIANLKNLTDLRLFINELSGEVPQNLGNVSSLTVLHLAENNFIGTLPPNICKGGKL 312

Query: 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297
           +NF+A+FN FSGPIP SLK+CSSLYRV ++SN LTG L+QDFG+YPNL YIDLS N+  G
Sbjct: 313 VNFSAAFNSFSGPIPISLKNCSSLYRVLIQSNNLTGLLDQDFGVYPNLNYIDLSSNQFGG 372

Query: 298 EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTEL 357
            +SP+WG+C+ LTLL L GN + G+IP EI  L  LV L+LSSN LSG IP  IGNL++L
Sbjct: 373 SLSPQWGECKNLTLLRLTGNKVSGEIPNEITQLENLVELELSSNNLSGSIPKSIGNLSKL 432

Query: 358 STLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNG 417
           S LSL  N +SG IP E+G++ NL  LDLSMN LSG IP +IG    L+SLSLS N LNG
Sbjct: 433 SVLSLRNNRLSGSIPVELGSIENLAELDLSMNMLSGSIPSEIGNNVKLQSLSLSMNQLNG 492

Query: 418 TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS 477
           +IPF+IG+LV LQDLLDLS+NSL+GEIP+ L  L SL+++NLS+N+LSG IP SL  M+S
Sbjct: 493 SIPFRIGSLVTLQDLLDLSHNSLSGEIPSLLGNLQSLENLNLSNNDLSGSIPNSLGKMVS 552

Query: 478 LVAVNLSYNNLEGPLPD 494
           LV++NLS NNLEGPLP+
Sbjct: 553 LVSINLSNNNLEGPLPN 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521547|ref|XP_004167791.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like, partial [Cucumis sativus]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 297/557 (53%), Positives = 366/557 (65%), Gaps = 73/557 (13%)

Query: 9   SLAYVAALAVLLCFCKA---SSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSP 65
           S  Y   L  LL F      +  TE EALLKWKE+L  QS++ SWVI ++++S+ + P  
Sbjct: 15  SFTYPVFLTFLLLFSNEPINAIPTEVEALLKWKESLPKQSLLDSWVISSNSTSSVSNP-- 72

Query: 66  CRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFD----------------- 108
           C+W GI CN+  SV +I L NTGL GTL  L+FSS PNLLR D                 
Sbjct: 73  CQWRGISCNNQSSVIQIKLDNTGLIGTLDHLNFSSLPNLLRLDLKINNLTGVIPPSIGVL 132

Query: 109 --------------------------VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGL 142
                                     V+ELDVSRN++ G +DPRLFPD      TGL  L
Sbjct: 133 SKLQFLDLSTNSLNSTLPLSLANLTEVFELDVSRNSIHGSLDPRLFPDGSGNSRTGLKSL 192

Query: 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG 202
           +NFLLQD ML GR+PEEIGN K L L+A D +  SGPIP S+GNLS+L +L +  N  +G
Sbjct: 193 RNFLLQDTMLEGRVPEEIGNVKSLNLIAFDRSQFSGPIPQSIGNLSNLNILRLNDNHFTG 252

Query: 203 EIPANIGTLSKLTDLHLFINKLSG-------------------------LPPQVCKGGKL 237
           EIP +I  L  LTDL LFIN+LSG                         LPP +CKGGKL
Sbjct: 253 EIPRSIANLKNLTDLRLFINELSGEVPQNLGNVSSLTVLHLAENNFIGTLPPNICKGGKL 312

Query: 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297
           +NF+A+FN FSGPIP SLK+CSSLYRV ++SN LTG L+QDFG+YPNL YIDLS N+  G
Sbjct: 313 VNFSAAFNSFSGPIPISLKNCSSLYRVLIQSNNLTGLLDQDFGVYPNLNYIDLSSNQFGG 372

Query: 298 EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTEL 357
            +SP+WG+C+ LTLL L GN + G+IP EI  L  LV L+LSSN LSG IP  IGNL++L
Sbjct: 373 SLSPQWGECKNLTLLRLTGNKVSGEIPNEITQLENLVELELSSNNLSGSIPKSIGNLSKL 432

Query: 358 STLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNG 417
           S LSL  N +SG IP E+G++ NL  LDLSMN LSG IP +IG    L+SLSLS N LNG
Sbjct: 433 SVLSLRNNRLSGSIPVELGSIENLAELDLSMNMLSGSIPSEIGNNVKLQSLSLSMNQLNG 492

Query: 418 TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS 477
           +IPF+IG+LV LQDLLDLS+NSL+GEIP+ L  L SL+++NLS+N+LSG IP SL  M+S
Sbjct: 493 SIPFRIGSLVTLQDLLDLSHNSLSGEIPSLLGNLQSLENLNLSNNDLSGSIPNSLGKMVS 552

Query: 478 LVAVNLSYNNLEGPLPD 494
           LV++NLS NNLEGPLP+
Sbjct: 553 LVSINLSNNNLEGPLPN 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515301|ref|XP_004164688.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cucumis sativus]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 273/568 (48%), Positives = 357/568 (62%), Gaps = 76/568 (13%)

Query: 1   MASQTKYPSLAYVAALAV---LLCFCKASSLTETEALLKWKETLVNQ--SIVQSWVIPAS 55
           MA+Q K     +V +L V   LL      S  E EALL+WK++L  Q  SI+ SWV  +S
Sbjct: 1   MATQKK--DFLFVFSLTVTFLLLVKVIEGSSMEAEALLRWKQSLPPQESSILDSWVDESS 58

Query: 56  NSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDV------ 109
           + +++   +PC+W+GI+C + G V+EI+LA +GL GTL  L+FS F +L+  D+      
Sbjct: 59  SHNSTFLNNPCQWNGIICTNEGHVSEIDLAYSGLRGTLEKLNFSCFSSLIVLDLKVNKFS 118

Query: 110 -------------------------------------YELDVSRNNMTGGIDPRLFPDD- 131
                                                 ELD+SRN +TG +D RLFP+  
Sbjct: 119 GAIPSSIGALSNLQYLDLSTNFFNSTIPLSLSNLTQLLELDLSRNFITGVLDSRLFPNGF 178

Query: 132 KNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLA 191
            ++   GL  L+NFLLQD +L G++PEEIGN K L L+A D +  SG IP S+GNL+ L 
Sbjct: 179 SSKSNLGLRNLRNFLLQDTLLEGKLPEEIGNVKFLNLIAFDRSQFSGEIPQSIGNLTYLN 238

Query: 192 VLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG------------------------- 226
            L + SN   GEIP +IG L  LTDL LFIN LSG                         
Sbjct: 239 ALRLNSNYFYGEIPKSIGNLKHLTDLRLFINYLSGEVPQNLGNVSSFEVLHLAQNFFTGH 298

Query: 227 LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT 286
           LPPQVCKGGKL+NF+ + N FSGPIP+SLK+C+SL+RV +++N LTG L++DFGIYPNL 
Sbjct: 299 LPPQVCKGGKLLNFSTAHNSFSGPIPSSLKNCASLFRVLMQNNSLTGSLDRDFGIYPNLN 358

Query: 287 YIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGE 346
           YIDLS+N+L+G++SP WG+C+ LT L +  N + GKIP EI  L  LV L+LS N LSG 
Sbjct: 359 YIDLSFNKLEGKLSPNWGECKNLTHLRIDNNKVSGKIPEEIIKLKNLVELELSYNNLSGS 418

Query: 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406
           IP  I NL++LS L L  N  SG +P EIG+L NL  LD+S N LSG IP +IG+L  L+
Sbjct: 419 IPKSIRNLSKLSMLGLRDNRFSGSLPIEIGSLENLKCLDISKNMLSGSIPSEIGDLSRLQ 478

Query: 407 SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
            L L  N LNG+IPF IG L  +Q ++DLS NSL+GEIP+    L SL+++NLSHNNLSG
Sbjct: 479 FLGLRGNQLNGSIPFNIGLLDSIQIMIDLSNNSLSGEIPSSFGNLKSLENLNLSHNNLSG 538

Query: 467 EIPASLSSMLSLVAVNLSYNNLEGPLPD 494
            +P SL +M SLV+V+LSYN+LEGPLPD
Sbjct: 539 SVPNSLGTMFSLVSVDLSYNSLEGPLPD 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460870|ref|XP_004148167.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cucumis sativus]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/568 (47%), Positives = 357/568 (62%), Gaps = 76/568 (13%)

Query: 1   MASQTKYPSLAYVAALAV---LLCFCKASSLTETEALLKWKETLVNQ--SIVQSWVIPAS 55
           MA+Q K     +V +L V   LL      S  E EALL+WK++L  Q  SI+ SWV  +S
Sbjct: 1   MATQKK--DFLFVFSLTVTFLLLVKVIEGSSMEAEALLRWKQSLPPQESSILDSWVDESS 58

Query: 56  NSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDV------ 109
           + +++   +PC+W+GI+C + G V+EI+LA +GL GT+  L+FS F +L+  D+      
Sbjct: 59  SHNSTFLNNPCQWNGIICTNEGHVSEIDLAYSGLRGTIEKLNFSCFSSLIVLDLKVNKFS 118

Query: 110 -------------------------------------YELDVSRNNMTGGIDPRLFPDD- 131
                                                 ELD+SRN +TG +D RLFP+  
Sbjct: 119 GAIPSSIGALSNLQYLDLSTNFFNSTIPLSLSNLTQLLELDLSRNFITGVLDSRLFPNGF 178

Query: 132 KNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLA 191
            ++   GL  L+NFLLQD +L G++PEEIGN K L L+A D +  SG IP S+GNL+ L 
Sbjct: 179 SSKSNLGLRNLRNFLLQDTLLEGKLPEEIGNVKFLNLIAFDRSQFSGEIPQSIGNLTYLN 238

Query: 192 VLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG------------------------- 226
            L + SN   GEIP +IG L  LTDL LFIN LSG                         
Sbjct: 239 ALRLNSNYFYGEIPKSIGNLKHLTDLRLFINYLSGEVPQNLGNVSSFEVLHLAQNFFTGH 298

Query: 227 LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT 286
           LPPQVCKGGKL+NF+ + N FSGPIP+SLK+C+SL+RV +++N LTG L++DFGIYPNL 
Sbjct: 299 LPPQVCKGGKLLNFSTAHNSFSGPIPSSLKNCASLFRVLMQNNSLTGSLDRDFGIYPNLN 358

Query: 287 YIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGE 346
           YIDLS+N+L+G++SP WG+C+ LT L +  N + GKIP EI  L  LV L+LS N LSG 
Sbjct: 359 YIDLSFNKLEGKLSPNWGECKNLTHLRIDNNKVSGKIPEEIIKLKNLVELELSYNNLSGS 418

Query: 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406
           IP  I NL++LS L L  N  SG +P EIG+L NL  LD+S N LSG IP +IG+L  L+
Sbjct: 419 IPKSIRNLSKLSMLGLRDNRFSGSLPIEIGSLENLKCLDISKNMLSGSIPSEIGDLSRLQ 478

Query: 407 SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
            L L  N LNG+IPF IG L  +Q ++DLS NSL+GEIP+    L SL+++NLSHNNLSG
Sbjct: 479 FLGLRGNQLNGSIPFNIGLLDSIQIMIDLSNNSLSGEIPSSFGNLKSLENLNLSHNNLSG 538

Query: 467 EIPASLSSMLSLVAVNLSYNNLEGPLPD 494
            +P SL +M SLV+V+LSYN+LEGPLPD
Sbjct: 539 SVPNSLGTMFSLVSVDLSYNSLEGPLPD 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488689|ref|XP_004158143.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 279/572 (48%), Positives = 360/572 (62%), Gaps = 80/572 (13%)

Query: 1   MASQTKYP----SLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVI--PA 54
           M +Q K+P     +  +     +LC  +AS  TETEALLKWK +L  QSI+ +WV+    
Sbjct: 1   MTNQVKHPIPLPVVVVLLLFLTILCKTRASITTETEALLKWKASLPKQSILDTWVVLPSN 60

Query: 55  SNSSNSTTPSPCRWSGIVCNDAGS-VTEINLANTGLAGTLHDLDFSSFPNLLRFD----- 108
           S+SS+S   +PC+W GI CN+  + V EINLA+TGL GT+  LDFSSFPNLLR D     
Sbjct: 61  SSSSSSKASNPCQWKGITCNNESTHVIEINLAHTGLNGTIESLDFSSFPNLLRLDLKLNN 120

Query: 109 --------------------------------------VYELDVSRNNMTGGIDPRLFPD 130
                                                 VYELDVSRN++TGG+ P  FP 
Sbjct: 121 LNGSIPPSIGLLSKLQFFDLSTNSFNSTLPSSLANFTEVYELDVSRNHITGGLHPSFFPT 180

Query: 131 DKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL 190
           + ++   G   +++ ++QD M+ G +PEE GN K L+++ALD     G IP S+GNL +L
Sbjct: 181 EDSK--FGWKSMQHLVMQDTMVEGELPEEFGNMKSLSIIALDRCKFYGSIPKSIGNLENL 238

Query: 191 AVLAV-ASNQLSGEIPANIGTLSKLTDLHLFINKLSG----------------------- 226
             L +      SGEIP  IG L+KL DL LF NKLSG                       
Sbjct: 239 TKLRLNGIGNFSGEIPEGIGKLTKLVDLRLFGNKLSGALPQDLGIYSPLVDVQIFENNFT 298

Query: 227 --LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
             LPP +C  G+L+N TA  N F+GPIP S K+C  LYR+RLE N+LTG++E+ FG+YPN
Sbjct: 299 GPLPPGLCTHGQLVNLTAFSNSFTGPIP-SFKNCPKLYRLRLEHNQLTGNVEEAFGVYPN 357

Query: 285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS 344
           LTYIDLS N+L G +SP WGKC+ LT L +A N I G+IP EI  L  LVVLDLS N  S
Sbjct: 358 LTYIDLSDNKLTGNLSPNWGKCKNLTKLSIATNMITGEIPKEITQLKNLVVLDLSFNNFS 417

Query: 345 GEIPAQIGNLTELSTLSLNGN-DISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELR 403
           G IP  IG+L+ LS+L L GN  +SG IP +IG+L NL+SLDLSMN++ G IPKQIG+  
Sbjct: 418 GLIPENIGDLSSLSSLQLQGNRQLSGNIPLDIGSLSNLESLDLSMNKIEGSIPKQIGDCS 477

Query: 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNN 463
            LR+LSLS N LNG+IP+++GN++ L+DLLDLS NSL GEIP+ L  L  L+ ++LSHN+
Sbjct: 478 RLRNLSLSTNRLNGSIPYELGNILSLEDLLDLSNNSLVGEIPSSLGNLMHLERLSLSHNH 537

Query: 464 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495
           LSGEIP SL  M+ LV++NLS+NNL GPLP G
Sbjct: 538 LSGEIPNSLKDMMGLVSINLSFNNLSGPLPSG 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451952|ref|XP_004143724.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cucumis sativus]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 279/572 (48%), Positives = 360/572 (62%), Gaps = 80/572 (13%)

Query: 1   MASQTKYP----SLAYVAALAVLLCFCKASSLTETEALLKWKETLVNQSIVQSWVI--PA 54
           M +Q K+P     +  +     +LC  +AS  TETEALLKWK +L  QSI+ +WV+    
Sbjct: 1   MTNQVKHPIPLPVVVVLLLFLTILCKTRASITTETEALLKWKASLPKQSILDTWVVLPSN 60

Query: 55  SNSSNSTTPSPCRWSGIVCNDAGS-VTEINLANTGLAGTLHDLDFSSFPNLLRFD----- 108
           S+SS+S   +PC+W GI CN+  + V EINLA+TGL GT+  LDFSSFPNLLR D     
Sbjct: 61  SSSSSSKASNPCQWKGITCNNESTHVIEINLAHTGLNGTIESLDFSSFPNLLRLDLKLNN 120

Query: 109 --------------------------------------VYELDVSRNNMTGGIDPRLFPD 130
                                                 VYELDVSRN++TGG+ P  FP 
Sbjct: 121 LNGSIPPSIGLLSKLQFFDLSTNSFNSTLPSSLANFTEVYELDVSRNHITGGLHPSFFPT 180

Query: 131 DKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL 190
           + ++   G   +++ ++QD M+ G +PEE GN K L+++ALD     G IP S+GNL +L
Sbjct: 181 EDSK--FGWKSMQHLVMQDTMVEGELPEEFGNMKSLSIIALDRCKFYGSIPKSIGNLENL 238

Query: 191 AVLAV-ASNQLSGEIPANIGTLSKLTDLHLFINKLSG----------------------- 226
             L +      SGEIP  IG L+KL DL LF NKLSG                       
Sbjct: 239 TKLRLNGIGNFSGEIPEGIGKLTKLVDLRLFGNKLSGPLPQDLGISSPLVDVHIFENNFT 298

Query: 227 --LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
             LPP +C  G+L+N TA  N F+GPIP S K+C  LYR+RLE N+LTG++E+ FG+YPN
Sbjct: 299 GPLPPGLCTHGQLVNLTAFSNSFTGPIP-SFKNCPKLYRLRLEHNQLTGNVEEAFGVYPN 357

Query: 285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS 344
           LTYIDLS N+L G +SP WGKC+ LT L +A N I G+IP EI  L  LVVLDLS N  S
Sbjct: 358 LTYIDLSDNKLTGNLSPNWGKCKSLTKLSIATNMITGEIPKEITQLKNLVVLDLSFNNFS 417

Query: 345 GEIPAQIGNLTELSTLSLNGN-DISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELR 403
           G IP  IG+L+ LS+L L GN  +SG IP +IG+L NL+SLDLSMN++ G IPKQIG+  
Sbjct: 418 GLIPENIGDLSSLSSLQLQGNRQLSGNIPLDIGSLSNLESLDLSMNKIEGSIPKQIGDCS 477

Query: 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNN 463
            LR+LSLS N LNG+IP+++GN++ L+DLLDLS NSL GEIP+ L KL  L+ ++LSHN+
Sbjct: 478 RLRNLSLSTNRLNGSIPYELGNILSLEDLLDLSNNSLVGEIPSSLGKLMHLERLSLSHNH 537

Query: 464 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495
           LSGEIP SL  M+ LV++NLS+NNL G LP G
Sbjct: 538 LSGEIPNSLKDMMGLVSINLSFNNLSGSLPSG 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.858	0.407	0.359	8.2e-64
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.824	0.365	0.378	2e-63
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.713	0.282	0.358	2.6e-54
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.814	0.366	0.342	3.2e-52
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.721	0.286	0.345	4.9e-50
TAIR|locus:2054421	890	AT2G41820 [Arabidopsis thalian	0.816	0.455	0.330	7.1e-50
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.768	0.346	0.356	4.2e-49
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.758	0.334	0.347	4.1e-48
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.764	0.533	0.329	4.8e-48
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.792	0.406	0.332	3.1e-47

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 8.2e-64, P = 8.2e-64
 Identities = 159/442 (35%), Positives = 218/442 (49%)

Query:    69 SGIVCNDAGSVT---EINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRN------NM 119
             SG + ++ G++    E+ L    L G +    F +  N+   +++E  +S        NM
Sbjct:   227 SGSIPSEIGNLPNLRELCLDRNNLTGKIPS-SFGNLKNVTLLNMFENQLSGEIPPEIGNM 285

Query:   120 TGGIDPRLFPDDKNQPMTGLLG-LKNFL---LQDNMLSGRIPEEIGNCKLLTLLALDGNF 175
             T      L  +    P+   LG +K      L  N L+G IP E+G  + +  L +  N 
Sbjct:   286 TALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENK 345

Query:   176 LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKG 234
             L+GP+P S G L+ L  L +  NQLSG IP  I   ++LT L L  N  +G LP  +C+G
Sbjct:   346 LTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRG 405

Query:   235 GKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNR 294
             GKL N T   NHF GP+P SL+ C SL RVR + N  +GD+ + FG+YP L +IDLS N 
Sbjct:   406 GKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNN 465

Query:   295 LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNL 354
               G++S  W + QKL    L+ NSI G IP EI                 GE+P  I N+
Sbjct:   466 FHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNI 525

Query:   355 TELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXX 414
               +S L LNGN +SG IP  I                   IP  +  L  L         
Sbjct:   526 NRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 585

Query:   415 XXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXX 474
                TIP  +  L  LQ +LDLSYN L GEI +Q   L +L+ ++LSHNNLSG+IP     
Sbjct:   586 LDQTIPEGLTKLSQLQ-MLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKD 644

Query:   475 XXXXXXXXXXYNNLEGPLPDGS 496
                       +NNL+GP+PD +
Sbjct:   645 MLALTHVDVSHNNLQGPIPDNA 666

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 164/433 (37%), Positives = 215/433 (49%)

Query:    78 SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDK----- 132
             S+ ++ L+N  L G++      +  NL    +YE     N +TG I P L   +      
Sbjct:   319 SMIDLELSNNKLTGSIPS-SLGNLKNLTILYLYE-----NYLTGVIPPELGNMESMIDLQ 372

Query:   133 --NQPMTGLL-----GLKN--FL-LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPS 182
               N  +TG +      LKN  +L L  N L+G IP+E+GN + +  L L  N L+G +P 
Sbjct:   373 LNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPD 432

Query:   183 SLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ-VCKGGKLINFT 241
             S GN + L  L +  N LSG IP  +   S LT L L  N  +G  P+ VCKG KL N +
Sbjct:   433 SFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNIS 492

Query:   242 ASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP 301
               +NH  GPIP SL+ C SL R R   N+ TGD+ + FGIYP+L +ID S+N+  GE+S 
Sbjct:   493 LDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISS 552

Query:   302 KWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLS 361
              W K  KL  L ++ N+I G IP EI                 GE+P  IGNLT LS L 
Sbjct:   553 NWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLR 612

Query:   362 LNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGTIPF 421
             LNGN +SG +P  +                   IP+       L           G+IP 
Sbjct:   613 LNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP- 671

Query:   422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXXXXX 481
             ++  L  L  L DLS+N L GEIP+QL  L SL  ++LSHNNLSG IP            
Sbjct:   672 RLSKLTQLTQL-DLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNV 730

Query:   482 XXXYNNLEGPLPD 494
                 N LEGPLPD
Sbjct:   731 DISNNKLEGPLPD 743

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 127/354 (35%), Positives = 180/354 (50%)

Query:   139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASN 198
             L  L    L++N L G IP  +GNC  +T++ L  N LSG IPSS G L+ L +  + +N
Sbjct:   480 LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNN 539

Query:   199 QLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSC 258
              L G +P ++  L  LT ++   NK +G    +C     ++F  + N F G IP  L   
Sbjct:   540 SLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKS 599

Query:   259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS 318
             ++L R+RL  N+ TG + + FG    L+ +D+S N L G +  + G C+KLT + L  N 
Sbjct:   600 TNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNY 659

Query:   319 IGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAX 378
             + G IP  +G                G +P +I +LT + TL L+GN ++G IP+EIG  
Sbjct:   660 LSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNL 719

Query:   379 XXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYN 438
                           GP+P  IG+L  L           G IP +IG L  LQ  LDLSYN
Sbjct:   720 QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYN 779

Query:   439 SLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPL 492
             + TG IP+ +  L  L+S++LSHN L GE+P               YNNLEG L
Sbjct:   780 NFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL 833

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.2e-52, P = 3.2e-52
 Identities = 144/420 (34%), Positives = 200/420 (47%)

Query:    75 DAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQ 134
             D  S+  + L   GL GT+         NL  + + E+D S N +TG I   L       
Sbjct:   287 DLQSLEFLYLYRNGLNGTIP----REIGNL-SYAI-EIDFSENALTGEIPLEL------- 333

Query:   135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
                 + GL+   L +N L+G IP E+   K L+ L L  N L+GPIP     L  L +L 
Sbjct:   334 --GNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQ 391

Query:   195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPT 253
             +  N LSG IP  +G  S L  L +  N LSG +P  +C    +I      N+ SG IPT
Sbjct:   392 LFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPT 451

Query:   254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLG 313
              + +C +L ++RL  N L G    +     N+T I+L  NR +G +  + G C  L  L 
Sbjct:   452 GITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQ 511

Query:   314 LAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
             LA N   G++P EIG                GE+P++I N   L  L +  N+ SG +P 
Sbjct:   512 LADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPS 571

Query:   374 EIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLL 433
             E+G+               G IP  +G L  L           G+IP ++G+L GLQ  L
Sbjct:   572 EVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIAL 631

Query:   434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLP 493
             +LSYN LTGEIP +L  L  L+ + L++NNLSGEIP               YN+L GP+P
Sbjct:   632 NLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP 691

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 4.9e-50, P = 4.9e-50
 Identities = 124/359 (34%), Positives = 181/359 (50%)

Query:   135 PMTGLLGLKNFL-LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVL 193
             P  G L   N L L+ N L G +P  +GNC  L +L L  N LSG IPSS G L  L  L
Sbjct:   474 PSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQL 533

Query:   194 AVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT 253
              + +N L G +P ++ +L  LT ++L  N+L+G    +C     ++F  + N F   IP 
Sbjct:   534 MLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPL 593

Query:   254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLG 313
              L +  +L R+RL  N+LTG +    G    L+ +D+S N L G +  +   C+KLT + 
Sbjct:   594 ELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHID 653

Query:   314 LAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
             L  N + G IP  +G                  +P ++ N T+L  LSL+GN ++G IP+
Sbjct:   654 LNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQ 713

Query:   374 EIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLL 433
             EIG                G +P+ +G+L  L           G IP +IG L  LQ  L
Sbjct:   714 EIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSAL 773

Query:   434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPL 492
             DLSYN+ TG+IP+ +  L+ L++++LSHN L+GE+P               +NNL G L
Sbjct:   774 DLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 7.1e-50, P = 7.1e-50
 Identities = 139/421 (33%), Positives = 201/421 (47%)

Query:    74 NDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKN 133
             +D  S+  ++L+     G +     +SF NL   +   LD+S N   G I P  F     
Sbjct:    83 SDLRSLKHLDLSGNNFNGRIP----TSFGNLSELEF--LDLSLNRFVGAI-PVEFGK--- 132

Query:   134 QPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVL 193
                  L GL+ F + +N+L G IP+E+   + L    + GN L+G IP  +GNLS L V 
Sbjct:   133 -----LRGLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVF 187

Query:   194 AVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIP 252
                 N L GEIP  +G +S+L  L+L  N+L G +P  + + GKL     + N  +G +P
Sbjct:   188 TAYENDLVGEIPNGLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELP 247

Query:   253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLL 312
              ++  CS L  +R+ +NEL G + +  G    LTY +   N L GE+  ++ KC  LTLL
Sbjct:   248 EAVGICSGLSSIRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCSNLTLL 307

Query:   313 GLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIP 372
              LA N   G IP E+G                GEIP        L+ L L+ N ++G IP
Sbjct:   308 NLAANGFAGTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIP 367

Query:   373 EEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDL 432
             +E+ +               G IP +IG    L           GTIP +IG +  LQ  
Sbjct:   368 KELCSMPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIA 427

Query:   433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPL 492
             L+LS+N L G +P +L KL  L S+++S+N L+G IP                N L GP+
Sbjct:   428 LNLSFNHLHGSLPPELGKLDKLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPV 487

Query:   493 P 493
             P
Sbjct:   488 P 488

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 4.2e-49, P = 4.2e-49
 Identities = 140/393 (35%), Positives = 186/393 (47%)

Query:   103 NLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGN 162
             NL+  D  E+D S N +TG I P+ F          +L LK   L +N+L G IP E+G 
Sbjct:   305 NLI--DAAEIDFSENQLTGFI-PKEFGH--------ILNLKLLHLFENILLGPIPRELGE 353

Query:   163 CKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN 222
               LL  L L  N L+G IP  L  L  L  L +  NQL G+IP  IG  S  + L +  N
Sbjct:   354 LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSAN 413

Query:   223 KLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGI 281
              LSG +P   C+   LI  +   N  SG IP  LK+C SL ++ L  N+LTG L  +   
Sbjct:   414 SLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFN 473

Query:   282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXX 341
               NLT ++L  N L G +S   GK + L  L LA N+  G+IP EIG             
Sbjct:   474 LQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSN 533

Query:   342 XXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGE 401
                G IP ++G+   +  L L+GN  SG I +E+G                G IP   G+
Sbjct:   534 QLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGD 593

Query:   402 LRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461
             L  L             IP ++G L  LQ  L++S+N+L+G IP  L  L  L+ + L+ 
Sbjct:   594 LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLND 653

Query:   462 NNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLPD 494
             N LSGEIP                NNL G +PD
Sbjct:   654 NKLSGEIPASIGNLMSLLICNISNNNLVGTVPD 686

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 4.1e-48, P = 4.1e-48
 Identities = 134/386 (34%), Positives = 180/386 (46%)

Query:   109 VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTL 168
             V E+D S N ++G I   L    K   +  LL    +L Q N L+G IP E+   + L  
Sbjct:   327 VMEIDFSENLLSGEIPVEL---SKISELR-LL----YLFQ-NKLTGIIPNELSKLRNLAK 377

Query:   169 LALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-L 227
             L L  N L+GPIP    NL+ +  L +  N LSG IP  +G  S L  +    N+LSG +
Sbjct:   378 LDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKI 437

Query:   228 PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTY 287
             PP +C+   LI      N   G IP  +  C SL ++R+  N LTG    +     NL+ 
Sbjct:   438 PPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSA 497

Query:   288 IDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEI 347
             I+L  NR  G + P+ G CQKL  L LA N     +P EI                 G I
Sbjct:   498 IELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPI 557

Query:   348 PAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRX 407
             P++I N   L  L L+ N   G +P E+G+               G IP  IG L  L  
Sbjct:   558 PSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTE 617

Query:   408 XXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467
                      G+IP Q+G L  LQ  ++LSYN  +GEIP ++  L  L  ++L++N+LSGE
Sbjct:   618 LQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGE 677

Query:   468 IPXXXXXXXXXXXXXXXYNNLEGPLP 493
             IP               YNNL G LP
Sbjct:   678 IPTTFENLSSLLGCNFSYNNLTGQLP 703

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
 Identities = 136/413 (32%), Positives = 197/413 (47%)

Query:    66 CRWSGIVCN-DAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGID 124
             C W G+ CN  +G V E++L+ + L G  H    SS  NL  F +  LD+S         
Sbjct:    83 CNWEGVTCNAKSGEVIELDLSCSYLHGRFHSN--SSIRNL-HF-LTTLDLS--------- 129

Query:   125 PRLFPDDKNQPMTGLLGLKNFLLQD---NMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP 181
                F D K Q M+ +  L +    D   N  SG++P  IGN   LT L L  N  SG +P
Sbjct:   130 ---FNDFKGQIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVP 186

Query:   182 SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINF 240
             SS+GNLS L  L ++ N+  G+ P++IG LS LT L+LF+N   G +P  +   G L N 
Sbjct:   187 SSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSI---GNLSNL 243

Query:   241 TASF---NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297
             T+ +   N+FSG IP+ + + S L R+ L SN   G++       PNL Y++LSYN   G
Sbjct:   244 TSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVNLSYNTFIG 303

Query:   298 EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNL-TE 356
                P   +     LLG + N+  GKIP+ I                 G IP  +GNL + 
Sbjct:   304 FQRPNKPEPSMGHLLG-SNNNFTGKIPSFICELRSLETLDLSDNNFSGLIPRCMGNLKSN 362

Query:   357 LSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXX 416
             LS L+L  N++SG +P+ I                 G +P+ +     L           
Sbjct:   363 LSHLNLRQNNLSGGLPKHI--FEILRSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRIN 420

Query:   417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
              T PF + +L  LQ L+ L  N+  G  P        L+ +++SHN+ +G +P
Sbjct:   421 DTFPFWLTSLPKLQVLV-LRSNAFHG--PIHEASFLKLRIIDISHNHFNGTLP 470

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.1e-47, P = 3.1e-47
 Identities = 138/415 (33%), Positives = 206/415 (49%)

Query:    82 INLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLG 141
             +NL N  L G +     +  PNL       LD++RN +TG I PRL     N+ +   LG
Sbjct:   150 LNLKNNQLTGPI-PATLTQIPNLKT-----LDLARNQLTGEI-PRLLY--WNEVLQ-YLG 199

Query:   142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALD--GNFLSGPIPSSLGNLSDLAVLAVASNQ 199
             L+      NML+G +  ++  C+L  L   D  GN L+G IP S+GN +   +L V+ NQ
Sbjct:   200 LRG-----NMLTGTLSPDM--CQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQ 252

Query:   200 LSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGK-LINFTASFNHFSGPIPTSLKSC 258
             ++G IP NIG L   T L L  NKL+G  P+V    + L     S N  +GPIP  L + 
Sbjct:   253 ITGVIPYNIGFLQVAT-LSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNL 311

Query:   259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS 318
             S   ++ L  N+LTG +  + G    L+Y+ L+ N L G++ P+ GK ++L  L LA N+
Sbjct:   312 SFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNN 371

Query:   319 IGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAX 378
             + G IP+ I                 G +P +  NL  L+ L+L+ N   G IP E+G  
Sbjct:   372 LVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHI 431

Query:   379 XXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYN 438
                           G IP  +G+L  L           GT+P + GNL  +Q ++D+S+N
Sbjct:   432 INLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQ-IIDVSFN 490

Query:   439 SLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLP 493
              L G IP +L +L ++ S+ L++N + G+IP               +NNL G +P
Sbjct:   491 FLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIP 545

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-68
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-63
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  236 bits (603), Expect = 2e-68
 Identities = 157/454 (34%), Positives = 237/454 (52%), Gaps = 23/454 (5%)

Query: 57  SSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSR 116
           S+ +++   C W GI CN++  V  I+L+   ++G +    F   P +       +++S 
Sbjct: 49  SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFR-LPYI-----QTINLSN 102

Query: 117 NNMTGGIDPRLFPDD--------KNQPMTG------LLGLKNFLLQDNMLSGRIPEEIGN 162
           N ++G I   +F            N   TG      +  L+   L +NMLSG IP +IG+
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162

Query: 163 CKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN 222
              L +L L GN L G IP+SL NL+ L  L +ASNQL G+IP  +G +  L  ++L  N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 223 KLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGI 281
            LSG +P ++     L +    +N+ +GPIP+SL +  +L  + L  N+L+G +      
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341
              L  +DLS N L GE+     + Q L +L L  N+  GKIP  + SL +L VL L SN
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401
           + SGEIP  +G    L+ L L+ N+++G IPE + +  NL  L L  N L G IPK +G 
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 402 LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461
            R LR + L  N+ +G +P +   L  L   LD+S N+L G I ++   + SLQ ++L+ 
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 462 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495
           N   G +P S  S   L  ++LS N   G +P  
Sbjct: 462 NKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  222 bits (567), Expect = 2e-63
 Identities = 154/424 (36%), Positives = 218/424 (51%), Gaps = 46/424 (10%)

Query: 69  SGIVCNDAGSVTEIN---LANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDP 125
           SG +  + G +T +N   L    L G +     SS  NL   ++  L + +N ++G I P
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIP----SSLGNLK--NLQYLFLYQNKLSGPIPP 278

Query: 126 RLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLG 185
            +F          L  L +  L DN LSG IPE +   + L +L L  N  +G IP +L 
Sbjct: 279 SIF---------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 186 NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASF 244
           +L  L VL + SN+ SGEIP N+G  + LT L L  N L+G +P  +C  G L       
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 245 NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWG 304
           N   G IP SL +C SL RVRL+ N  +G+L  +F   P + ++D+S N LQG ++ +  
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449

Query: 305 KCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364
               L +L LA N   G +P   GS  +L  LDLS NQ SG +P ++G+L+EL  L L+ 
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIG 424
           N +SG IP+E+ +   L SLDLS N+LSG IP    E+  L                   
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL------------------- 549

Query: 425 NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484
                   LDLS N L+GEIP  L  + SL  +N+SHN+L G +P S  + L++ A  ++
Sbjct: 550 ------SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STGAFLAINASAVA 602

Query: 485 YNNL 488
            N  
Sbjct: 603 GNID 606

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 95.3 bits (237), Expect = 8e-21
 Identities = 45/96 (46%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL 440
           +D L L    L G IP  I +LR L+S++LS N++ G IP  +G++  L+ +LDLSYNS 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-VLDLSYNSF 478

Query: 441 TGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML 476
            G IP  L +LTSL+ +NL+ N+LSG +PA+L   L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 39/92 (42%), Positives = 54/92 (58%)

Query: 288 IDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI 347
           + L    L+G +     K + L  + L+GNSI G IP  +GS++ L VLDLS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 348 PAQIGNLTELSTLSLNGNDISGPIPEEIGALL 379
           P  +G LT L  L+LNGN +SG +P  +G  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 37/89 (41%), Positives = 57/89 (64%)

Query: 336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPI 395
           L L +  L G IP  I  L  L +++L+GN I G IP  +G++ +L+ LDLS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 396 PKQIGELRDLRSLSLSQNNLNGTIPFQIG 424
           P+ +G+L  LR L+L+ N+L+G +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
           +  L L+   + G IP +I  L +L S++LS N + G IP  +G +  L  L LS N+ N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL-EKLTSLQSMNLSHN 462
           G+IP  +G L  L+ +L+L+ NSL+G +PA L  +L    S N + N
Sbjct: 480 GSIPESLGQLTSLR-ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 36/89 (40%), Positives = 52/89 (58%)

Query: 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPI 371
           LGL    + G IP +I  L  L  ++LS N + G IP  +G++T L  L L+ N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIG 400
           PE +G L +L  L+L+ N LSG +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 408 LSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467
           L L    L G IP  I  L  LQ + +LS NS+ G IP  L  +TSL+ ++LS+N+ +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 468 IPASLSSMLSLVAVNLSYNNLEGPLP 493
           IP SL  + SL  +NL+ N+L G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
           L +  L G IP +I   + L  + L GN + G IP SLG+++ L VL ++ N  +G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 207 NIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFN 245
           ++G L+ L  L+L  N LSG +P  +  GG+L++  ASFN
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAAL--GGRLLH-RASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
           D L L    L G IP  + KL  LQS+NLS N++ G IP SL S+ SL  ++LSYN+  G
Sbjct: 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 491 PLPD 494
            +P+
Sbjct: 481 SIPE 484

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query: 264 VRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI 323
           + L++  L G +  D     +L  I+LS N ++G + P  G    L +L L+ NS  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIG 352
           P  +G L+ L +L+L+ N LSG +PA +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 128 FPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNL 187
            P+D    ++ L  L++  L  N + G IP  +G+   L +L L  N  +G IP SLG L
Sbjct: 434 IPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 188 SDLAVLAVASNQLSGEIPANIG 209
           + L +L +  N LSG +PA +G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 10/188 (5%)

Query: 308 KLTLLGLAGNSIGGKIPAEIGSL-SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND 366
            LT L L  N+I   IP  IG L S L  LDLS N++   +P+ + NL  L  L L+ ND
Sbjct: 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174

Query: 367 ISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL 426
           +S  +P+ +  L NL++LDLS N++S  +P +I  L  L  L LS N++   +   + NL
Sbjct: 175 LSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL 231

Query: 427 VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
             L   L+LS N L  ++P  +  L++L++++LS+N +S    +SL S+ +L  ++LS N
Sbjct: 232 KNLS-GLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGN 287

Query: 487 NLEGPLPD 494
           +L   LP 
Sbjct: 288 SLSNALPL 295

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 11/206 (5%)

Query: 283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ 342
            NL  +DLS N+++   SP       L  L L+ N +   +P  + +LS L  LDLS N+
Sbjct: 140 SNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 343 LSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGEL 402
           +S ++P +I  L+ L  L L+ N I   +   +  L NL  L+LS N+L   +P+ IG L
Sbjct: 198 IS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN 462
            +L +L LS N +  +    +G+L  L+  LDLS NSL+  +P     L  L+ +     
Sbjct: 255 SNLETLDLSNNQI--SSISSLGSLTNLR-ELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Query: 463 NLSGEIPASLSSMLSLVAVNLSYNNL 488
            L       L     L+  N+  N  
Sbjct: 312 TL---KALELKLNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 26/82 (31%), Positives = 40/82 (48%)

Query: 249 GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK 308
           G IP  +     L  + L  N + G++    G   +L  +DLSYN   G +    G+   
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 309 LTLLGLAGNSIGGKIPAEIGSL 330
           L +L L GNS+ G++PA +G  
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 24/186 (12%)

Query: 328 GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL---SLNGNDIS-GPIPEEIGAL----L 379
                L  LDLS N L  +    + +L   S+L    LN N +    +      L     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 380 NLDSLDLSMNRLSGPIPKQIGEL----RDLRSLSLSQNNLNG---TIPFQIGNLVGLQDL 432
            L+ L L  NRL G   + + +     RDL+ L+L+ N +         +        ++
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 433 LDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNL 483
           LDL+ N LT E    +   L  L SL+ +NL  NNL+    A+L+S L     SL+ ++L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 484 SYNNLE 489
           S N++ 
Sbjct: 258 SCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLS-SMLSLVAVNLSYNNLEGP 491
           +DLS  +++G+I + + +L  +Q++NLS+N LSG IP  +  +  SL  +NLS NN  G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 492 LPDGS 496
           +P GS
Sbjct: 134 IPRGS 138

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 23/112 (20%)

Query: 169 LALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP 228
           L LD   L G IP+ +  L  L  + ++ N + G IP ++G+++ L  L L         
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL--------- 473

Query: 229 PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFG 280
                         S+N F+G IP SL   +SL  + L  N L+G +    G
Sbjct: 474 --------------SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
           LDLS N LT       + L +L+ ++LS NNL+   P + S + SL +++LS NNL
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 90/390 (23%), Positives = 157/390 (40%), Gaps = 24/390 (6%)

Query: 43  NQSIVQSWVIPASNSSNSTTPSPCRWSGIV-----CNDAGSVTEINLANTGLAGTLHDLD 97
            +S + S  +    SSN+   +P   +         + A +   +NL++  L      L 
Sbjct: 8   LKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLS 67

Query: 98  FSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQ------PMTGLLGLKNFLLQDNM 151
                +LL            N+   +       + N+       +  L  L +  L +N 
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN 127

Query: 152 LSGRIPEEIGNCKL-LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
           ++  IP  IG  K  L  L L  N +   +PS L NL +L  L ++ N LS ++P  +  
Sbjct: 128 IT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN 184

Query: 211 LSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270
           LS L +L L  NK+S LPP++     L     S N     + +SL +  +L  + L +N+
Sbjct: 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243

Query: 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330
           L  DL +  G   NL  +DLS N++        G    L  L L+GNS+   +P     L
Sbjct: 244 LE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIA--L 298

Query: 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR 390
             L++  L +  L+ +      N   L+   L+  + S   PE +  L +L++L    N 
Sbjct: 299 LLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETS--SPEALSILESLNNLWTLDN- 355

Query: 391 LSGPIPKQIGELRDLRSLSLSQNNLNGTIP 420
                      +++  ++    + +   + 
Sbjct: 356 ALDESNLNRYIVKNPNAIGSLLDLVKKHVN 385

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 10/48 (20%)

Query: 29 TETEALLKWKETLVN--QSIVQSWVIPASNSSNSTTPSPCRWSGIVCN 74
           + +ALL +K +L       + SW        N ++  PC W+G+ C+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSW--------NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 284 NLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ 342
           NL  +DLS NRL   +          L +L L+GN++    P     L  L  LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 343 L 343
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.63
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
PLN03150	623	hypothetical protein; Provisional	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.68
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
KOG4341	483	consensus F-box protein containing LRR [General fu	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG4341	483	consensus F-box protein containing LRR [General fu	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.22
KOG4308	478	consensus LRR-containing protein [Function unknown	96.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.24
KOG4308	478	consensus LRR-containing protein [Function unknown	95.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.31
smart00370	26	LRR Leucine-rich repeats, outliers.	91.63
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.1
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.21
smart00370	26	LRR Leucine-rich repeats, outliers.	88.21
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.8

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8e-62  Score=546.05  Aligned_cols=467  Identities=33%  Similarity=0.529  Sum_probs=277.0

Q ss_pred             CCCCCCchhHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCE
Q 035878            1 MASQTKYPSLAYVAALAVLLCFCKASSLTETEALLKWKETLVN-QSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSV   79 (496)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~k~~~~~-~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~~~~~v   79 (496)
                      ||...+..+.++++.+++++...+...++|++||++||+++.+ .+.+.+|...         .|||.|.||+|+..++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~---------~~~c~w~gv~c~~~~~v   71 (968)
T PLN00113          1 MAKKGPQHCPYLIFMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSS---------ADVCLWQGITCNNSSRV   71 (968)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHccCCCHHHHHHHHHHHHhCCCCcccCCCCCCC---------CCCCcCcceecCCCCcE
Confidence            7776666666655544433333333355899999999999976 5678899642         68999999999988899


Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878           80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE  159 (496)
Q Consensus        80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~  159 (496)
                      ++|+|++++++|.+++ .+..+++|+     +|+|++|.++|.+|..++        .++++|++|+|++|.+++.+|. 
T Consensus        72 ~~L~L~~~~i~~~~~~-~~~~l~~L~-----~L~Ls~n~~~~~ip~~~~--------~~l~~L~~L~Ls~n~l~~~~p~-  136 (968)
T PLN00113         72 VSIDLSGKNISGKISS-AIFRLPYIQ-----TINLSNNQLSGPIPDDIF--------TTSSSLRYLNLSNNNFTGSIPR-  136 (968)
T ss_pred             EEEEecCCCccccCCh-HHhCCCCCC-----EEECCCCccCCcCChHHh--------ccCCCCCEEECcCCccccccCc-
Confidence            9999999999999887 899999999     678888988888887753        3455555555555555554443 


Q ss_pred             CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc-ccccccCCCCCc
Q 035878          160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLI  238 (496)
Q Consensus       160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~  238 (496)
                       +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+ +|..+..+++|+
T Consensus       137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence             334555555555555555555555555555555555555555555555555555555555555554 455555555555


Q ss_pred             EEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc
Q 035878          239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS  318 (496)
Q Consensus       239 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  318 (496)
                      .|++++|++++.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878          319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ  398 (496)
Q Consensus       319 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  398 (496)
                      +.+.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCC
Q 035878          399 IGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSL  478 (496)
Q Consensus       399 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  478 (496)
                      +..+++|+.|++++|++.+.+|..+..+++|+.+ ++++|++++.+|..+.+++.|++|++++|++++.+|..+..+++|
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV-RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE-ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence            5444555555555555555555555555555554 555555554444445555555555555555554444444444444


Q ss_pred             CEEeCcCCCCcccCC
Q 035878          479 VAVNLSYNNLEGPLP  493 (496)
Q Consensus       479 ~~L~ls~N~l~g~ip  493 (496)
                      +.|++++|++.|.+|
T Consensus       455 ~~L~L~~n~~~~~~p  469 (968)
T PLN00113        455 QMLSLARNKFFGGLP  469 (968)
T ss_pred             cEEECcCceeeeecC
Confidence            444444444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.4e-52  Score=469.37  Aligned_cols=407  Identities=39%  Similarity=0.593  Sum_probs=291.3

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCceeccc-------------------eEEccCCcccccCCCCCCCCCCCCCCC
Q 035878           77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVY-------------------ELDVSRNNMTGGIDPRLFPDDKNQPMT  137 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~-------------------~L~Ls~n~l~~~ip~~~~~~~~n~~l~  137 (496)
                      .++++|+|++|.+.+.++. .++.+++|++|+++                   +|++++|.+.+.+|..         ++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---------l~  209 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE---------LG  209 (968)
T ss_pred             CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH---------Hc
Confidence            4678888888888887777 78888888865553                   5555666665555554         55


Q ss_pred             CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878          138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL  217 (496)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (496)
                      ++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+.++++|++|
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            66677777777777776777777777777777777777766677677777777777777777666666666666677777


Q ss_pred             ECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc
Q 035878          218 HLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ  296 (496)
Q Consensus       218 ~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  296 (496)
                      ++++|.+.+ +|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.
T Consensus       290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence            777666665 5666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             ccCCcCcCC------------------------CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhc
Q 035878          297 GEVSPKWGK------------------------CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIG  352 (496)
Q Consensus       297 ~~~~~~~~~------------------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~  352 (496)
                      +.+|..+..                        +++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+.
T Consensus       370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence            555554444                        44455555555555544454555555555555555555555555555


Q ss_pred             CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccc
Q 035878          353 NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL  432 (496)
Q Consensus       353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  432 (496)
                      .+++|++|++++|++.+.+|..+ ..++|++|++++|++++.+|..+.++++|++|++++|++.+.+|..+.++++|++|
T Consensus       450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence            55555555555555555555443 34677788888888888888888889999999999999999999999999999999


Q ss_pred             ccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCCC
Q 035878          433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG  495 (496)
Q Consensus       433 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  495 (496)
                       ++++|+++|.+|..+.++++|++|+|++|+++|.+|..+..+++|+++++++|+++|.||..
T Consensus       529 -~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        529 -DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             -ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence             99999999999999999999999999999999999999999999999999999999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-39  Score=315.66  Aligned_cols=390  Identities=22%  Similarity=0.226  Sum_probs=291.8

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 035878           79 VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPE  158 (496)
Q Consensus        79 v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~  158 (496)
                      ..-+|++++.+...    +-..++..-..+-..||+|+|.++..-+..         |.++++|+.+++.+|.++ .+|.
T Consensus        54 ~~lldcs~~~lea~----~~~~l~g~lp~~t~~LdlsnNkl~~id~~~---------f~nl~nLq~v~l~~N~Lt-~IP~  119 (873)
T KOG4194|consen   54 TRLLDCSDRELEAI----DKSRLKGFLPSQTQTLDLSNNKLSHIDFEF---------FYNLPNLQEVNLNKNELT-RIPR  119 (873)
T ss_pred             ceeeecCccccccc----cccccCCcCccceeeeeccccccccCcHHH---------HhcCCcceeeeeccchhh-hccc
Confidence            34455665555421    223333333334446888888887333322         677888888888888887 6777


Q ss_pred             CCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccc-cccCCCCC
Q 035878          159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP-QVCKGGKL  237 (496)
Q Consensus       159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L  237 (496)
                      ..+...+|+.|+|.+|.|+..-.+++..++.|+.|||+.|.++...-..|..=.++++|+|++|.|+.+-. .+..+.+|
T Consensus       120 f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  120 FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence            66666678888888888877777778888888888888888875444566666788888888888887543 34456788


Q ss_pred             cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878          238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN  317 (496)
Q Consensus       238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  317 (496)
                      ..|.|+.|+++...+..|+++++|+.|+|..|++.-.--..|..+++|+.|.+..|.+...-...|..+.++++|+|..|
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N  279 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN  279 (873)
T ss_pred             eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence            88888888888766677777888888888888876544556778888888888888887777777888888888888888


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChh
Q 035878          318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK  397 (496)
Q Consensus       318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  397 (496)
                      +++..-..++.++++|+.|++|+|.|...-+..+..+++|++|+|++|+++...+.+|..+..|++|.|++|.+...-..
T Consensus       280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~  359 (873)
T KOG4194|consen  280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG  359 (873)
T ss_pred             hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence            88877777888888888888888888877777778888888888888888877777788888888888888888766666


Q ss_pred             hhhCCCCCCEEeccCccCCccCC---hhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhc
Q 035878          398 QIGELRDLRSLSLSQNNLNGTIP---FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSS  474 (496)
Q Consensus       398 ~l~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  474 (496)
                      .|..+++|++|||++|.++..|-   ..|..+++|+.| ++.+|++....-..|.++..|++|||.+|.+-.+.|++|..
T Consensus       360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL-~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL-RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe-eecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence            77788888888888888776554   336667888888 88888888444467888888888888888888777888887


Q ss_pred             CCCCCEEeCc
Q 035878          475 MLSLVAVNLS  484 (496)
Q Consensus       475 l~~L~~L~ls  484 (496)
                      + .|+.|.+.
T Consensus       439 m-~Lk~Lv~n  447 (873)
T KOG4194|consen  439 M-ELKELVMN  447 (873)
T ss_pred             c-hhhhhhhc
Confidence            7 77777654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-39  Score=314.48  Aligned_cols=364  Identities=25%  Similarity=0.269  Sum_probs=188.3

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 035878           79 VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPE  158 (496)
Q Consensus        79 v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~  158 (496)
                      ++.||+++|.+. .+....|.++++|+     .+++..|.++ .||..         .....+|+.|+|.+|.|+..-.+
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq-----~v~l~~N~Lt-~IP~f---------~~~sghl~~L~L~~N~I~sv~se  143 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQ-----EVNLNKNELT-RIPRF---------GHESGHLEKLDLRHNLISSVTSE  143 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcce-----eeeeccchhh-hcccc---------cccccceeEEeeeccccccccHH
Confidence            444555555554 22221344455555     4445555554 45543         12233455555555555554445


Q ss_pred             CCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccC-CCCC
Q 035878          159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCK-GGKL  237 (496)
Q Consensus       159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~-l~~L  237 (496)
                      ++..++.|+.||||.|.|+..--..|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++.+|...++ +++|
T Consensus       144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL  223 (873)
T ss_pred             HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence            555555555555555555533333344444555555555555554455555555555555555555555554444 5555


Q ss_pred             cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878          238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN  317 (496)
Q Consensus       238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  317 (496)
                      +.|+|..|++.-.---.|.++++|+.|.|..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|+++.|
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            55555555554322334455555555555555555444455555555555555555555444455555555555555555


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCCh-
Q 035878          318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIP-  396 (496)
Q Consensus       318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-  396 (496)
                      .|...-++.+..+++|++|+|++|+++..-+..|..+..|++|+|++|.++..-...|..+++|++|||++|.++..+. 
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            5555555555555555555555555554444455555555555555555554333444455555555555555543322 


Q ss_pred             --hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcc
Q 035878          397 --KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLS  460 (496)
Q Consensus       397 --~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  460 (496)
                        ..|..+++|+.|++.+|++....-..|..+.+|++| ||.+|.|...-|+.|..+ .|++|.++
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L-dL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL-DLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCccccee-cCCCCcceeecccccccc-hhhhhhhc
Confidence              234445555555555555553223445555555555 555555555555555555 55555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-38  Score=298.92  Aligned_cols=357  Identities=27%  Similarity=0.403  Sum_probs=261.4

Q ss_pred             eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878          111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL  190 (496)
Q Consensus       111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  190 (496)
                      .++.|+|.++ .+|..         ++.+..|+.+++++|.+. .+|+.++.+..|+.++..+|+++ ..|..+.++.+|
T Consensus        95 ~l~vs~n~ls-~lp~~---------i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l  162 (565)
T KOG0472|consen   95 SLNVSHNKLS-ELPEQ---------IGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKL  162 (565)
T ss_pred             HhhcccchHh-hccHH---------Hhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHH
Confidence            4455555555 55554         567778888888888887 66777888888888888888887 677778888888


Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE  270 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  270 (496)
                      ..+++.+|++....|..+ +++.|++||...|-++.+|+.++.+.+|+.|++..|++. .+| .|..|..|+++++..|+
T Consensus       163 ~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQ  239 (565)
T ss_pred             HHhhccccchhhCCHHHH-HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccH
Confidence            888888888874444444 488888888888888889999888899999999999887 455 68888899999999888


Q ss_pred             CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc---
Q 035878          271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI---  347 (496)
Q Consensus       271 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---  347 (496)
                      +.-...+....++++..||+.+|++. +.|..+..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+...-   
T Consensus       240 i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI  316 (565)
T ss_pred             HHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence            87443344558889999999999987 67888888889999999999998 567788888 8999999888763110   


Q ss_pred             ----------------------------------ch----hhcCCCC--------------------------CCEEecc
Q 035878          348 ----------------------------------PA----QIGNLTE--------------------------LSTLSLN  363 (496)
Q Consensus       348 ----------------------------------~~----~l~~l~~--------------------------L~~L~Ls  363 (496)
                                                        +.    ......+                          .+..+++
T Consensus       317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs  396 (565)
T KOG0472|consen  317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS  396 (565)
T ss_pred             HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence                                              00    0011122                          3334444


Q ss_pred             CCcCc-----------------------cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCC
Q 035878          364 GNDIS-----------------------GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP  420 (496)
Q Consensus       364 ~n~l~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p  420 (496)
                      .|++.                       +.+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|
T Consensus       397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP  474 (565)
T KOG0472|consen  397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP  474 (565)
T ss_pred             cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence            44442                       122333445556666666666665 55666666666666666666665 666


Q ss_pred             hhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878          421 FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       421 ~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  489 (496)
                      .++..+..++.+ -.++|++....|+.+.++.+|..|||.+|.+. .||..+++|++|++|++++|+|.
T Consensus       475 ~~~y~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  475 ECLYELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHhhHHHHHHH-HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            665555555555 55556666555666899999999999999998 88999999999999999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=1.1e-37  Score=305.81  Aligned_cols=342  Identities=27%  Similarity=0.373  Sum_probs=166.3

Q ss_pred             CCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCC-cccCccCCCCCCCC
Q 035878          137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS-GEIPANIGTLSKLT  215 (496)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~  215 (496)
                      ..+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..+..++.|+.+++.+|++. ..+|..+..+..|+
T Consensus        29 ~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt  106 (1255)
T KOG0444|consen   29 EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT  106 (1255)
T ss_pred             HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence            34444555555544444 44555555555555555555544 23333444555555555555442 22344444455555


Q ss_pred             EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878          216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL  295 (496)
Q Consensus       216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  295 (496)
                      .|||++|++..+|..+...+++..|++++|++.....+.+.++..|-.|+|++|++. .+|..+..+..|++|++++|.+
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            555555555555555555555555555555554322233344445555555555554 2333344445555555555544


Q ss_pred             cccCCcCcCCCCCCCEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878          296 QGEVSPKWGKCQKLTLLGLAGNSIG-GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE  374 (496)
Q Consensus       296 ~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  374 (496)
                      .-..-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|+.+..+++|+.|+||+|+++ .+.-.
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~  263 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT  263 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence            4332233334444555555544322 234445555555555555555554 44555555555555555555554 22223


Q ss_pred             hcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCc-cCChhccCCccccccccccCCcCCccchhhhcCCCC
Q 035878          375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNG-TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS  453 (496)
Q Consensus       375 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~  453 (496)
                      .+...+|++|++|+|+++ .+|.+++.++.|+.|.+.+|+++- -||..++.+..|+.+ ...+|.+. .+|+.+..|.+
T Consensus       264 ~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf-~aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  264 EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF-HAANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH-Hhhccccc-cCchhhhhhHH
Confidence            333445555555555555 455555555555555555554431 245555555555555 55555554 45555555555


Q ss_pred             CCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878          454 LQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN  487 (496)
Q Consensus       454 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  487 (496)
                      |+.|.|++|++. ..|+.+.-++.|+.||+..|+
T Consensus       341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            555555555554 345555555555555555553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=8.2e-37  Score=299.80  Aligned_cols=393  Identities=23%  Similarity=0.366  Sum_probs=333.6

Q ss_pred             CCEEEEEcCCCCCccc-cCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           77 GSVTEINLANTGLAGT-LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~-~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      .-|+.+|+++|.++|. +|. +...+++++.     |.|....+. .+|..         ++.+.+|++|.+++|++. .
T Consensus         7 pFVrGvDfsgNDFsg~~FP~-~v~qMt~~~W-----LkLnrt~L~-~vPeE---------L~~lqkLEHLs~~HN~L~-~   69 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPH-DVEQMTQMTW-----LKLNRTKLE-QVPEE---------LSRLQKLEHLSMAHNQLI-S   69 (1255)
T ss_pred             ceeecccccCCcCCCCcCch-hHHHhhheeE-----EEechhhhh-hChHH---------HHHHhhhhhhhhhhhhhH-h
Confidence            4589999999999965 555 7888888884     555666665 78877         788999999999999998 5


Q ss_pred             CCcCCCCCCCCCEEEccCCCCc-ccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccccc-C
Q 035878          156 IPEEIGNCKLLTLLALDGNFLS-GPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVC-K  233 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~-~  233 (496)
                      +...+..++.|+.+++..|++. .-+|..+..+..|++|||++|++. ..|..+..-+++-+|+|++|+|..||..++ +
T Consensus        70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin  148 (1255)
T KOG0444|consen   70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN  148 (1255)
T ss_pred             hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence            5566889999999999999884 458889999999999999999998 889999999999999999999999998765 6


Q ss_pred             CCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc-ccCCcCcCCCCCCCEE
Q 035878          234 GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLL  312 (496)
Q Consensus       234 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L  312 (496)
                      +..|-.|++++|++. .+|+.+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+
T Consensus       149 LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  149 LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence            788999999999997 57888999999999999999887554455667788889999886533 4678899999999999


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878          313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS  392 (496)
Q Consensus       313 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  392 (496)
                      |++.|.+. ..|..+-.+++|+.|+||+|+++ .+....+...+|++|++|.|+++ .+|..+++++.|+.|.+.+|++.
T Consensus       228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             cccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            99999998 78999999999999999999998 55566777899999999999999 89999999999999999999986


Q ss_pred             -CCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878          393 -GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       393 -~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  471 (496)
                       ..+|+.++.+.+|+.+..++|.+. .+|+.++.|..|+.| .|++|++. .+|+.+.-++.|+.||+..|.-.-..|.-
T Consensus       305 FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL-~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  305 FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL-KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh-ccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence             348999999999999999999997 999999999999999 99999998 79999999999999999999765333322


Q ss_pred             hhcCCCCCEEeCcCC-----CCcccCCC
Q 035878          472 LSSMLSLVAVNLSYN-----NLEGPLPD  494 (496)
Q Consensus       472 l~~l~~L~~L~ls~N-----~l~g~ip~  494 (496)
                      -..-++|+.-++.+-     ++.|..|.
T Consensus       382 ~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  382 NDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             chhhhcceeeecceehhhHHhhccCCcc
Confidence            222245555444432     35665554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=9.4e-36  Score=279.03  Aligned_cols=364  Identities=29%  Similarity=0.454  Sum_probs=304.7

Q ss_pred             CEEEEEcCCCCCccccCCCCCCCCCCCceeccc------------------eEEccCCcccccCCCCCCCCCCCCCCCCC
Q 035878           78 SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVY------------------ELDVSRNNMTGGIDPRLFPDDKNQPMTGL  139 (496)
Q Consensus        78 ~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~------------------~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l  139 (496)
                      .++.+++..+.++ +.|+ +++.+..++.++.+                  .++.++|.+. ++|++         ++.+
T Consensus        69 ~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~---------i~~~  136 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDS---------IGRL  136 (565)
T ss_pred             ceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCch---------HHHH
Confidence            4777888888776 5555 67777777777666                  7899999998 67766         6778


Q ss_pred             CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      ..|+.++..+|+++ ..|+.++++.+|..+++.+|.++...|..+ +++.|++||...|.++ .+|+.++.+.+|+.|++
T Consensus       137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  137 LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence            89999999999998 778889999999999999999995555444 5999999999999887 78999999999999999


Q ss_pred             CCCCCccccccccCCCCCcEEecCCCcccCCCCcc-cCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc
Q 035878          220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS-LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      ..|++..+| .+..+..|++++++.|.+. .+|.. ...++++.+||+..|++. ..|+.+..+.+|.+||+++|.++ .
T Consensus       214 ~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~  289 (565)
T KOG0472|consen  214 RRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-S  289 (565)
T ss_pred             hhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-c
Confidence            999999999 7888999999999999998 45544 458999999999999998 56888889999999999999998 5


Q ss_pred             CCcCcCCCCCCCEEEccCCcccc-------------------------------------cCCc-ccC---CCC------
Q 035878          299 VSPKWGKCQKLTLLGLAGNSIGG-------------------------------------KIPA-EIG---SLS------  331 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~~n~l~~-------------------------------------~~~~-~l~---~l~------  331 (496)
                      .|..++++ .|+.|-+.+|.+..                                     ..|. .+.   .+.      
T Consensus       290 Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~  368 (565)
T KOG0472|consen  290 LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD  368 (565)
T ss_pred             CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence            67789999 99999999996530                                     0000 000   000      


Q ss_pred             --------------------CCCEEEccCCcCc-----------------------cccchhhcCCCCCCEEeccCCcCc
Q 035878          332 --------------------QLVVLDLSSNQLS-----------------------GEIPAQIGNLTELSTLSLNGNDIS  368 (496)
Q Consensus       332 --------------------~L~~L~Ls~n~l~-----------------------~~~~~~l~~l~~L~~L~Ls~n~l~  368 (496)
                                          -...++++.|++.                       +.+|..++.+++|..|++++|.+.
T Consensus       369 ~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln  448 (565)
T KOG0472|consen  369 VSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN  448 (565)
T ss_pred             ccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence                                1445666666553                       134455677899999999999998


Q ss_pred             cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhh
Q 035878          369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL  448 (496)
Q Consensus       369 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l  448 (496)
                       .+|..++.+..|+.|+++.|+|. .+|..+.....++.+-.++|++....|..+.++.+|..| ||.+|.+. .+|..+
T Consensus       449 -~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL-DL~nNdlq-~IPp~L  524 (565)
T KOG0472|consen  449 -DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL-DLQNNDLQ-QIPPIL  524 (565)
T ss_pred             -hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee-ccCCCchh-hCChhh
Confidence             78999999999999999999999 899998888889998889999985556669999999999 99999999 899999


Q ss_pred             cCCCCCCEEEcccCcCC
Q 035878          449 EKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       449 ~~l~~L~~L~Ls~N~l~  465 (496)
                      ++|++|++|++++|+|.
T Consensus       525 gnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  525 GNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccceeEEEecCCccC
Confidence            99999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=2.3e-31  Score=272.68  Aligned_cols=375  Identities=27%  Similarity=0.372  Sum_probs=241.9

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 035878           79 VTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPE  158 (496)
Q Consensus        79 v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~  158 (496)
                      +..||++++.+. .+|. .+..+.+|+     .|+++.|.+. .+|.+         ..++.+|+++.|.+|.+. ..|.
T Consensus        47 L~~l~lsnn~~~-~fp~-~it~l~~L~-----~ln~s~n~i~-~vp~s---------~~~~~~l~~lnL~~n~l~-~lP~  108 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPI-QITLLSHLR-----QLNLSRNYIR-SVPSS---------CSNMRNLQYLNLKNNRLQ-SLPA  108 (1081)
T ss_pred             eEEeeccccccc-cCCc-hhhhHHHHh-----hcccchhhHh-hCchh---------hhhhhcchhheeccchhh-cCch
Confidence            788889888775 5555 677777887     5677788777 66654         567777888888887776 6777


Q ss_pred             CCCCCCCCCEEEccCCCCcccCCccccCCCCC-------------------ceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL-------------------AVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      .+..+++|++||+++|.+. .+|.-+..+..+                   +.+++..|.+.+.++..+..++.  .|||
T Consensus       109 ~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldL  185 (1081)
T KOG0618|consen  109 SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDL  185 (1081)
T ss_pred             hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeec
Confidence            7888888888888888776 455444433333                   33333334444444444433333  4666


Q ss_pred             CCCCCccccccccC--------------------CCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcccccc
Q 035878          220 FINKLSGLPPQVCK--------------------GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDF  279 (496)
Q Consensus       220 ~~n~l~~lp~~l~~--------------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  279 (496)
                      .+|.+..+  .+..                    .++++.|+.+.|.++...+.  ..-.+|+.++++.|++++. |+++
T Consensus       186 r~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi  260 (1081)
T KOG0618|consen  186 RYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWI  260 (1081)
T ss_pred             ccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc-hHHH
Confidence            66655420  1111                    13344444444444321111  1124566666666666643 4666


Q ss_pred             CCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhh--------
Q 035878          280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI--------  351 (496)
Q Consensus       280 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--------  351 (496)
                      +.+.+|+.++..+|+++ .+|..+...++|+.|++..|.+. -+|......+.|++|+|..|.+. ..|..+        
T Consensus       261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l  337 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASL  337 (1081)
T ss_pred             HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHH
Confidence            66677777777766664 44555555566666666666665 34445555666666666666654 222211        


Q ss_pred             ------------------cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCc
Q 035878          352 ------------------GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQN  413 (496)
Q Consensus       352 ------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n  413 (496)
                                        ...+.|+.|.+.+|.++...-..+....+|+.|+|++|++.......+.+++.|++|+||+|
T Consensus       338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence                              12345778888888888776667777888888888888888544456778888888888888


Q ss_pred             cCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc-chhhhcCCCCCEEeCcCCC
Q 035878          414 NLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI-PASLSSMLSLVAVNLSYNN  487 (496)
Q Consensus       414 ~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~  487 (496)
                      +++ .+|.++.++..|+.| ...+|++. ..| .+.+++.|+.+|+|.|+++... |.... -++|++||+++|.
T Consensus       418 kL~-~Lp~tva~~~~L~tL-~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLGRLHTL-RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhh-hhhHHHHhhhhhHHH-hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            887 788888888888888 88888887 667 6788888888888888887443 33332 2788888888886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-30  Score=264.51  Aligned_cols=388  Identities=26%  Similarity=0.291  Sum_probs=271.8

Q ss_pred             CCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCC--------CCC---CCCCCCCCc
Q 035878           75 DAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDD--------KNQ---PMTGLLGLK  143 (496)
Q Consensus        75 ~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~--------~n~---~l~~l~~L~  143 (496)
                      ...+++.+.|.++.+. ..|. .+..+.+|+     +||+|.|.|. .+|..+..+.        +|.   .++... .+
T Consensus        89 ~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~-----~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-ik  159 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQ-SLPA-SISELKNLQ-----YLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS-IK  159 (1081)
T ss_pred             hhhcchhheeccchhh-cCch-hHHhhhccc-----ccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc-ch
Confidence            3455666777766654 3444 666677776     6788888887 7777654443        221   122222 66


Q ss_pred             EEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCC--------------------CCceEecccCcCCcc
Q 035878          144 NFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLS--------------------DLAVLAVASNQLSGE  203 (496)
Q Consensus       144 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--------------------~L~~L~L~~n~l~~~  203 (496)
                      .+++..|.+.+.++..+..+..  .|||.+|.+..   ..+..+.                    +|+.|+.++|.++..
T Consensus       160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             hhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee
Confidence            6777777777766666666655  67777776651   1123333                    444444444544422


Q ss_pred             cCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCC
Q 035878          204 IPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYP  283 (496)
Q Consensus       204 ~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  283 (496)
                      .+.  ..-.+|+++++++|+++.+|++++.+.+|+.+...+|+++ .+|..+....+|+.|....|.+. .+|......+
T Consensus       235 ~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~  310 (1081)
T KOG0618|consen  235 DVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLK  310 (1081)
T ss_pred             ccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccc
Confidence            111  1234677777777777777777777777777777777774 56666677777777777777776 3455556677


Q ss_pred             CccEEEcccCcccccCCcCcCCCC-CCCEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878          284 NLTYIDLSYNRLQGEVSPKWGKCQ-KLTLLGLAGNSIGGKIPA-EIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS  361 (496)
Q Consensus       284 ~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  361 (496)
                      .|++|++..|++....+..+.... .++.|..+.|++.. .|. .=...+.|+.|++.+|.++...-+.+.+.++|+.|+
T Consensus       311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            777777777777643333333332 25666666666652 221 112356799999999999988777889999999999


Q ss_pred             ccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC
Q 035878          362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT  441 (496)
Q Consensus       362 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~  441 (496)
                      |++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+.+++.|+.+ |+|.|+++
T Consensus       390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l-DlS~N~L~  465 (1081)
T KOG0618|consen  390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL-DLSCNNLS  465 (1081)
T ss_pred             ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE-ecccchhh
Confidence            9999998555556788999999999999999 78999999999999999999998 778 88999999999 99999998


Q ss_pred             cc-chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCC
Q 035878          442 GE-IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN  486 (496)
Q Consensus       442 ~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  486 (496)
                      .. +|.... -++|++||+++|.-.......|..++++...++.-|
T Consensus       466 ~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  466 EVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            54 444333 389999999999854455667888888888888777

>PLN03210 Resistant to P

Probab=99.94  E-value=1.3e-25  Score=254.04  Aligned_cols=335  Identities=21%  Similarity=0.237  Sum_probs=169.6

Q ss_pred             CCCCCCCcEEEccCCc------CcccCCcCCCCCC-CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccC
Q 035878          136 MTGLLGLKNFLLQDNM------LSGRIPEEIGNCK-LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI  208 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  208 (496)
                      |.++++|++|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..| ...+|++|++.+|++. .++..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence            4455555555554332      2223444444432 3555555555544 444444 3455555555555554 344445


Q ss_pred             CCCCCCCEEECCCCC-CccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccE
Q 035878          209 GTLSKLTDLHLFINK-LSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTY  287 (496)
Q Consensus       209 ~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  287 (496)
                      ..+++|++|+++++. +..+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|..-+.+|..+ .+++|++
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence            555555555555543 22244 24445555555555554444555555555555555555554333444333 4555555


Q ss_pred             EEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc-------cccchhhcCCCCCCEE
Q 035878          288 IDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS-------GEIPAQIGNLTELSTL  360 (496)
Q Consensus       288 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-------~~~~~~l~~l~~L~~L  360 (496)
                      |++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|++|++.++...       ...+......++|+.|
T Consensus       709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence            555555443333322   234555555555554 334332 3455555555443211       0111112233556666


Q ss_pred             eccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcC
Q 035878          361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL  440 (496)
Q Consensus       361 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l  440 (496)
                      ++++|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|++|++++|.....+|..   .+++++| +|++|.+
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L-~Ls~n~i  858 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL-NLSRTGI  858 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe-ECCCCCC
Confidence            666665555566666666666666666654333455443 4556666666665443344432   2345555 6666666


Q ss_pred             CccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCC
Q 035878          441 TGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN  486 (496)
Q Consensus       441 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  486 (496)
                      + .+|.++..+++|++|++++|+--..+|..+..+++|+.+++++|
T Consensus       859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            5 45666666666666666664333345555555666666666655

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.93  E-value=1.7e-24  Score=244.84  Aligned_cols=324  Identities=22%  Similarity=0.200  Sum_probs=265.6

Q ss_pred             CCcCCCCCCCCCEEEccCCC------CcccCCccccCCC-CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc
Q 035878          156 IPEEIGNCKLLTLLALDGNF------LSGPIPSSLGNLS-DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP  228 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp  228 (496)
                      .+.+|.++++|+.|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|++..++
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc
Confidence            34568899999999997653      3345777777765 6999999999887 678777 5789999999999999999


Q ss_pred             ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCC
Q 035878          229 PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK  308 (496)
Q Consensus       229 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  308 (496)
                      ..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            9999999999999998876666774 8889999999999998777889999999999999999987666777665 7899


Q ss_pred             CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCc-------cccchhhcCCCCC
Q 035878          309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS-------GPIPEEIGALLNL  381 (496)
Q Consensus       309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L  381 (496)
                      |+.|++++|...+.+|..   .++|++|++++|.+. .+|..+ .+++|++|++.++...       ...+......++|
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            999999999766666643   468999999999987 667655 5789999999874321       1122223345789


Q ss_pred             CEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878          382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH  461 (496)
Q Consensus       382 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  461 (496)
                      +.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.| ++++|.....+|..   .++|++|+|++
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L-~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL-DLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE-ECCCCCcccccccc---ccccCEeECCC
Confidence            999999999888899999999999999999987666888766 78999999 99998765566653   36899999999


Q ss_pred             CcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          462 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       462 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      |.++ .+|.++..+++|+.|++++|+--..+|.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            9998 7899999999999999999653334553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=8.3e-27  Score=218.85  Aligned_cols=343  Identities=24%  Similarity=0.251  Sum_probs=189.0

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccC-CCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDG-NFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL  214 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (496)
                      |+.+++||.|||++|.|+.+-|.+|..++.|..|-+.+ |+|+..-...|+++..|+.|.+.-|++.-...+.|..+++|
T Consensus        87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l  166 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL  166 (498)
T ss_pred             ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence            44455555555555555545555555554444443333 44543333344455555555555555444444444455555


Q ss_pred             CEEECCCCCCccccc-cccCCCCCcEEecCCCcccC------------CCCcccCCCCC---------------------
Q 035878          215 TDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSG------------PIPTSLKSCSS---------------------  260 (496)
Q Consensus       215 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~------------~~p~~l~~l~~---------------------  260 (496)
                      ..|.+.+|.+..++. .+..+..++.+.+..|.+..            ..|..++...-                     
T Consensus       167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c  246 (498)
T KOG4237|consen  167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC  246 (498)
T ss_pred             chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence            555555555444444 23334444444444433110            01111111111                     


Q ss_pred             -CcEE--E-ccCCCCCCccc-cccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 035878          261 -LYRV--R-LESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVV  335 (496)
Q Consensus       261 -L~~L--~-L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  335 (496)
                       ++.+  . .+.+...+..| ..|..+++|++|++++|.++++-+.+|.+...+++|.|..|++...-...|.++..|+.
T Consensus       247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence             1111  1 11222222333 35677788888888888888777777777888888888888777666667777778888


Q ss_pred             EEccCCcCccccchhhcCCCCCCEEeccCCcCccc-----cchhh-----------cCCCCCCEEEccCCcCCC---CCh
Q 035878          336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP-----IPEEI-----------GALLNLDSLDLSMNRLSG---PIP  396 (496)
Q Consensus       336 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~-----------~~l~~L~~L~Ls~n~l~~---~~~  396 (496)
                      |+|.+|+|+...|..|..+..|.+|++-.|.+.-.     ..+|+           ++...++.++++...+..   ..|
T Consensus       327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~  406 (498)
T KOG4237|consen  327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGP  406 (498)
T ss_pred             eeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCc
Confidence            88888888777777777777788887777665310     11111           112245555555554431   111


Q ss_pred             hhh---------hCCCCCCE-EeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          397 KQI---------GELRDLRS-LSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       397 ~~l---------~~~~~L~~-L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      +..         ..++.+.+ ...|+..+. .+|..+.  ..-.++ .+.+|.++ .+|..  .+.+| .+|+++|+++.
T Consensus       407 ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tel-yl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  407 EELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTEL-YLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             cccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHH-hcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence            111         12233332 223333332 4443322  123456 89999998 77876  66788 89999999986


Q ss_pred             ccchhhhcCCCCCEEeCcCC
Q 035878          467 EIPASLSSMLSLVAVNLSYN  486 (496)
Q Consensus       467 ~~p~~l~~l~~L~~L~ls~N  486 (496)
                      .--..|.++++|.+|-+|||
T Consensus       479 Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  479 LSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhcccccchhhhheeEEecC
Confidence            66678899999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=2.5e-23  Score=220.01  Aligned_cols=265  Identities=29%  Similarity=0.398  Sum_probs=149.7

Q ss_pred             CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878          142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI  221 (496)
Q Consensus       142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (496)
                      -..|+++++.++ .+|..+.  ++|+.|++++|+++ .+|.   ..++|++|++++|+++ .+|..   .++|+.|++++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence            445555555555 3444443  24555555555555 2332   1244555555555554 23321   23445555555


Q ss_pred             CCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCc
Q 035878          222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP  301 (496)
Q Consensus       222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  301 (496)
                      |.++.+|..                           .++|+.|++++|+++. +|.   ..++|+.|++++|.+++ +|.
T Consensus       272 N~L~~Lp~l---------------------------p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~  319 (788)
T PRK15387        272 NPLTHLPAL---------------------------PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA  319 (788)
T ss_pred             Cchhhhhhc---------------------------hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC
Confidence            554444331                           1344455555555542 222   12456666666666553 232


Q ss_pred             CcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCC
Q 035878          302 KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL  381 (496)
Q Consensus       302 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  381 (496)
                      .   ..+|+.|++++|.+++ +|..   ..+|++|++++|++++ +|..   .++|+.|++++|+++ .+|..   ..+|
T Consensus       320 l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L  384 (788)
T PRK15387        320 L---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGL  384 (788)
T ss_pred             C---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---cccc
Confidence            1   1345566666666653 3321   1356777777777763 4432   245667777777776 34543   2467


Q ss_pred             CEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878          382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH  461 (496)
Q Consensus       382 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  461 (496)
                      +.|++++|++++ +|..   .++|+.|++++|+++ .+|...   .+|+.| ++++|+++ .+|..+.++++|+.|+|++
T Consensus       385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L-~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSL-SVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhh-hhccCccc-ccChHHhhccCCCeEECCC
Confidence            777777777773 4432   256778888888877 456432   356666 88888887 6788788888888888888


Q ss_pred             CcCCcccchhhhc
Q 035878          462 NNLSGEIPASLSS  474 (496)
Q Consensus       462 N~l~~~~p~~l~~  474 (496)
                      |++++.+|..+..
T Consensus       455 N~Ls~~~~~~L~~  467 (788)
T PRK15387        455 NPLSERTLQALRE  467 (788)
T ss_pred             CCCCchHHHHHHH
Confidence            8888877776643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=3.8e-23  Score=218.69  Aligned_cols=261  Identities=28%  Similarity=0.336  Sum_probs=194.2

Q ss_pred             CceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCC
Q 035878          190 LAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN  269 (496)
Q Consensus       190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  269 (496)
                      -..|+++.+.++ .+|+.+.  ++|+.|++.+|+++.+|..   .++|++|++++|+++. +|..   .++|+.|++++|
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence            445556665555 4454443  2566666666666665542   3566666666666663 3432   357888999999


Q ss_pred             CCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch
Q 035878          270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA  349 (496)
Q Consensus       270 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  349 (496)
                      .++. +|..   .++|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+++ +|.
T Consensus       273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             chhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence            8874 3432   3679999999999984 454   24789999999999985 4442   2468899999999984 554


Q ss_pred             hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccc
Q 035878          350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL  429 (496)
Q Consensus       350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  429 (496)
                      .   ..+|++|++++|++++ +|..   ..+|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|...   ++|
T Consensus       340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s~L  404 (788)
T PRK15387        340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP---SEL  404 (788)
T ss_pred             c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc---cCC
Confidence            2   2589999999999994 5643   3578899999999994 6653   357999999999998 466543   568


Q ss_pred             cccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       430 ~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      +.| ++++|+++ .+|...   .+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|.
T Consensus       405 ~~L-dLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        405 KEL-MVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CEE-EccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            888 99999999 477643   46889999999998 7899999999999999999999998764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=2.5e-25  Score=208.92  Aligned_cols=341  Identities=20%  Similarity=0.207  Sum_probs=254.2

Q ss_pred             CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEeccc-CcCCcccCccCCCCCCCCEEECC
Q 035878          142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS-NQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      -..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|++|..+++|..|.+.+ |+|+..-...|+++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            56789999999988889999999999999999999999999999999999888877 89986666789999999999999


Q ss_pred             CCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCC------------CccccccCCCC----
Q 035878          221 INKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT------------GDLEQDFGIYP----  283 (496)
Q Consensus       221 ~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~----  283 (496)
                      -|++.-++ +.+..++++..|.+..|.+...-...+..+..++.+.+..|.+.            ...|..++...    
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            99998844 45677899999999999987544457888999999999888732            11111222111    


Q ss_pred             ------------------CccEE--Ec-ccCcccccCC-cCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878          284 ------------------NLTYI--DL-SYNRLQGEVS-PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN  341 (496)
Q Consensus       284 ------------------~L~~L--~l-s~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  341 (496)
                                        .++.+  .+ +.+...+..| ..|..+++|++|++++|+++++-+.+|.+...+++|.|..|
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence                              11111  11 1122222323 24778899999999999999999999999999999999999


Q ss_pred             cCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCC-----Chhhh-----------hCCCCC
Q 035878          342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-----IPKQI-----------GELRDL  405 (496)
Q Consensus       342 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~l-----------~~~~~L  405 (496)
                      ++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|.+-.|.+.-.     +-+++           +....+
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~  388 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFV  388 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchh
Confidence            99866666788999999999999999988899999999999999988875311     01111           122346


Q ss_pred             CEEeccCccCCc---cCChh---------ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhh
Q 035878          406 RSLSLSQNNLNG---TIPFQ---------IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLS  473 (496)
Q Consensus       406 ~~L~Ls~n~l~~---~~p~~---------~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  473 (496)
                      +.+.+++..+..   ..|++         -..++-+..+...|+..+. .+|..+.  ..-.+|.+.+|.++ .+|..  
T Consensus       389 ~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--  462 (498)
T KOG4237|consen  389 RQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--  462 (498)
T ss_pred             ccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--
Confidence            677777664431   12222         2234555555466666665 5665543  24568999999998 77776  


Q ss_pred             cCCCCCEEeCcCCCCc
Q 035878          474 SMLSLVAVNLSYNNLE  489 (496)
Q Consensus       474 ~l~~L~~L~ls~N~l~  489 (496)
                      .+.+| .+|+|+|+++
T Consensus       463 ~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  463 LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             HHhhh-hcccccCcee
Confidence            56778 9999999975

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=1.3e-21  Score=208.36  Aligned_cols=203  Identities=25%  Similarity=0.416  Sum_probs=112.9

Q ss_pred             CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878          164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS  243 (496)
Q Consensus       164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~  243 (496)
                      .+...|+++++.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+++.+|..+.  .+|+.|+++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            35678888888877 4666553  57888888888887 4565443  578888888888887776543  367777777


Q ss_pred             CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC
Q 035878          244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI  323 (496)
Q Consensus       244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  323 (496)
                      +|++. .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            77766 4555443  356666666666663 344332  356666666666553 232221  245555555555542 2


Q ss_pred             CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878          324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS  392 (496)
Q Consensus       324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  392 (496)
                      |..+  .++|++|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+++
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            3222  1345555555555442 333321  34444444444444 2333321  34444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=9.4e-22  Score=209.36  Aligned_cols=279  Identities=24%  Similarity=0.385  Sum_probs=205.0

Q ss_pred             CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      .+...|+++++.++ .+|..+.  +.|+.|+|++|.++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            35788999999888 4666553  57999999999998 5676654  58999999999988 5676553  47999999


Q ss_pred             CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878          220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      ++|++..+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +
T Consensus       249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        249 SINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             cCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            9999999888764  58999999999988 4676554  589999999999885 444332  578999999999884 4


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL  379 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  379 (496)
                      |..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.  .
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~  388 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A  388 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence            5433  3689999999999885 565553  68999999999988 5666553  68999999999998 5666654  3


Q ss_pred             CCCEEEccCCcCCCCChhhh----hCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc-cchhhhcCCCCC
Q 035878          380 NLDSLDLSMNRLSGPIPKQI----GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG-EIPAQLEKLTSL  454 (496)
Q Consensus       380 ~L~~L~Ls~n~l~~~~~~~l----~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~-~~p~~l~~l~~L  454 (496)
                      .|+.|++++|++. .+|..+    ..++.+..|++.+|+++.      ..+..++.+  ++.+.+.| .++..++.+.++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L--l~s~~~~gp~i~~~~~~~~~l  459 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL--MSSVGYQGPRVLFAMGDFSIV  459 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh--hhcccccCCcccccccccccc
Confidence            6889999999988 455443    445778889999998862      334445444  23344443 334444444444


Q ss_pred             CE
Q 035878          455 QS  456 (496)
Q Consensus       455 ~~  456 (496)
                      +.
T Consensus       460 ~~  461 (754)
T PRK15370        460 RV  461 (754)
T ss_pred             cc
Confidence            43

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.83  E-value=6.8e-22  Score=194.62  Aligned_cols=278  Identities=26%  Similarity=0.303  Sum_probs=167.5

Q ss_pred             eEecccCcCC-cccCccCCCCCCCCEEECCCCCCcc-----ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEE
Q 035878          192 VLAVASNQLS-GEIPANIGTLSKLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR  265 (496)
Q Consensus       192 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  265 (496)
                      .|+|..+.++ ...+..+..++.|++++++++.++.     ++..+...+.+++++++++.+.+ .+..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence            4666667666 3344455566778888888887744     45455555666666666655542 00000          


Q ss_pred             ccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCC---CCCEEEccCCcccc----cCCcccCCC-CCCCEEE
Q 035878          266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ---KLTLLGLAGNSIGG----KIPAEIGSL-SQLVVLD  337 (496)
Q Consensus       266 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~---~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~  337 (496)
                             ..++..+..+++|++|++++|.+.+..+..+..+.   +|++|++++|++++    .+...+..+ ++|++|+
T Consensus        71 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~  143 (319)
T cd00116          71 -------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV  143 (319)
T ss_pred             -------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence                   01122333344555555555554433333332222   36666666665552    122233444 6777777


Q ss_pred             ccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCC
Q 035878          338 LSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDL  405 (496)
Q Consensus       338 Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L  405 (496)
                      +++|.+++.    ++..+..+++|++|++++|.+++.    ++..+...++|++|++++|.+.+.    +...+..+++|
T Consensus       144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            777777632    334455667788888887777642    233344556788888888877643    23345567788


Q ss_pred             CEEeccCccCCccCChhccC-----CccccccccccCCcCCc----cchhhhcCCCCCCEEEcccCcCCcc----cchhh
Q 035878          406 RSLSLSQNNLNGTIPFQIGN-----LVGLQDLLDLSYNSLTG----EIPAQLEKLTSLQSMNLSHNNLSGE----IPASL  472 (496)
Q Consensus       406 ~~L~Ls~n~l~~~~p~~~~~-----l~~L~~LL~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l  472 (496)
                      ++|++++|.+++.....+..     .+.|+++ ++++|.+++    .+...+..+++|+++++++|.++..    +...+
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L-~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTL-SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEE-EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            88888888877533333322     3678888 888888872    3455667778899999999999855    44455


Q ss_pred             hcC-CCCCEEeCcCCCC
Q 035878          473 SSM-LSLVAVNLSYNNL  488 (496)
Q Consensus       473 ~~l-~~L~~L~ls~N~l  488 (496)
                      ... +.|+.+|+.+|++
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            555 6889999988875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.83  E-value=8.2e-22  Score=194.05  Aligned_cols=275  Identities=23%  Similarity=0.289  Sum_probs=167.6

Q ss_pred             EEEccCCCCc-ccCCccccCCCCCceEecccCcCCcc----cCccCCCCCCCCEEECCCCCCcc-------ccccccCCC
Q 035878          168 LLALDGNFLS-GPIPSSLGNLSDLAVLAVASNQLSGE----IPANIGTLSKLTDLHLFINKLSG-------LPPQVCKGG  235 (496)
Q Consensus       168 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~-------lp~~l~~l~  235 (496)
                      .|+|..+.++ ...+..+..+.+|++|+++++.++..    ++..+...+++++++++++.+.+       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            5788888887 44556667788899999999998642    55667778899999999988763       223334445


Q ss_pred             CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc----cCCcCcCCC-CCCC
Q 035878          236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG----EVSPKWGKC-QKLT  310 (496)
Q Consensus       236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~~-~~L~  310 (496)
                      +|++|++++|.+.+..+..+..+..                    . ++|++|++++|.+.+    .+...+..+ ++|+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~  140 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE  140 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence            5555555555554333333322222                    1 225555555554442    111223333 5566


Q ss_pred             EEEccCCccccc----CCcccCCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCC
Q 035878          311 LLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGAL  378 (496)
Q Consensus       311 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l  378 (496)
                      .|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~  220 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL  220 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence            666666665532    233445556677777777776632    233445556777777777777533    23345566


Q ss_pred             CCCCEEEccCCcCCCCChhhhhC-----CCCCCEEeccCccCCc----cCChhccCCccccccccccCCcCCcc----ch
Q 035878          379 LNLDSLDLSMNRLSGPIPKQIGE-----LRDLRSLSLSQNNLNG----TIPFQIGNLVGLQDLLDLSYNSLTGE----IP  445 (496)
Q Consensus       379 ~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~LL~Ls~N~l~~~----~p  445 (496)
                      ++|++|++++|.+++.....+..     .+.|++|++++|.+++    .+...+..++.|+++ ++++|.++..    +.
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l-~l~~N~l~~~~~~~~~  299 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL-DLRGNKFGEEGAQLLA  299 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE-ECCCCCCcHHHHHHHH
Confidence            77888888887777532222221     3678888888887762    233445566778888 8888888754    44


Q ss_pred             hhhcCC-CCCCEEEcccCcC
Q 035878          446 AQLEKL-TSLQSMNLSHNNL  464 (496)
Q Consensus       446 ~~l~~l-~~L~~L~Ls~N~l  464 (496)
                      ..+... +.|+++++.+|++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         300 ESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhhcCCchhhcccCCCCC
Confidence            444444 6788888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-19  Score=152.67  Aligned_cols=184  Identities=31%  Similarity=0.512  Sum_probs=124.0

Q ss_pred             CCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEE
Q 035878          281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL  360 (496)
Q Consensus       281 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  360 (496)
                      .+.+++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4456667777777776 45566777777777777777776 56667777777777777777776 667777777777777


Q ss_pred             eccCCcCcc-ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCc
Q 035878          361 SLNGNDISG-PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS  439 (496)
Q Consensus       361 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~  439 (496)
                      |+.+|++.. ..|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+- +.|..++.++.|+++ .+++|+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel-hiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL-HIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH-hcccce
Confidence            777776653 35666666677777777777776 56666777777777777777765 667777777777777 777777


Q ss_pred             CCccchhhhcCCCC---CCEEEcccCcCCcccchh
Q 035878          440 LTGEIPAQLEKLTS---LQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       440 l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~~p~~  471 (496)
                      ++ .+|..++++.-   =+.+.+.+|.....|.+.
T Consensus       185 l~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  185 LT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             ee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence            77 55655555332   234445556555444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=3.4e-19  Score=149.71  Aligned_cols=154  Identities=27%  Similarity=0.420  Sum_probs=96.5

Q ss_pred             CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878          138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL  217 (496)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (496)
                      ++.+.+.|.|++|.++ .+|..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4455666667777776 55556777777777777777776 56777777777777777777766 667777777777777


Q ss_pred             ECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878          218 HLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL  295 (496)
Q Consensus       218 ~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  295 (496)
                      |+.+|++..  +|..++.+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            777777665  6665655566666666666554 34555555555555555555443 2344444455555555555554


Q ss_pred             c
Q 035878          296 Q  296 (496)
Q Consensus       296 ~  296 (496)
                      +
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>PLN03150 hypothetical protein; Provisional

Probab=99.63  E-value=1.5e-15  Score=161.33  Aligned_cols=150  Identities=31%  Similarity=0.481  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC-CCCccccceeeCC---C--CCEEEEEcCCCCCccccCCCCCCC
Q 035878           27 SLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTT-PSPCRWSGIVCND---A--GSVTEINLANTGLAGTLHDLDFSS  100 (496)
Q Consensus        27 ~~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~-~~~C~w~gv~c~~---~--~~v~~L~L~~~~l~g~~~~~~l~~  100 (496)
                      ..+|.+||+++|+++.+.. ..+|.++       .| +.+|.|.||.|..   .  ..|+.|+|+++++.|.++. .++.
T Consensus       370 ~~~~~~aL~~~k~~~~~~~-~~~W~g~-------~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~  440 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPL-RFGWNGD-------PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISK  440 (623)
T ss_pred             CchHHHHHHHHHHhcCCcc-cCCCCCC-------CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhC
Confidence            3478999999999986532 2478641       01 1123799999952   1  2477777777777777766 5666


Q ss_pred             CCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccC
Q 035878          101 FPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPI  180 (496)
Q Consensus       101 l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  180 (496)
                      +++|+     +|+|++|.+.|.+|..         ++++++|++|+|++|.++|.+|+.++++++|++|+|++|.++|.+
T Consensus       441 L~~L~-----~L~Ls~N~l~g~iP~~---------~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i  506 (623)
T PLN03150        441 LRHLQ-----SINLSGNSIRGNIPPS---------LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV  506 (623)
T ss_pred             CCCCC-----EEECCCCcccCcCChH---------HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence            66655     4555666666555554         455555555555555555555555555555555555555555555


Q ss_pred             CccccCC-CCCceEecccCc
Q 035878          181 PSSLGNL-SDLAVLAVASNQ  199 (496)
Q Consensus       181 p~~l~~l-~~L~~L~L~~n~  199 (496)
                      |..+..+ .++..+++.+|.
T Consensus       507 P~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        507 PAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ChHHhhccccCceEEecCCc
Confidence            5555432 234445555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=4.1e-13  Score=136.18  Aligned_cols=199  Identities=38%  Similarity=0.593  Sum_probs=115.8

Q ss_pred             EEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCC-CCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878          263 RVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ-KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN  341 (496)
Q Consensus       263 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  341 (496)
                      .+++..+.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666532222 2333456777777777766 3344444443 6777777777666 34445566666777777777


Q ss_pred             cCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCCh
Q 035878          342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF  421 (496)
Q Consensus       342 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~  421 (496)
                      ++. .+|...+..++|+.|++++|+++ .+|........|+++.+++|++. .++..+..+..+..+.+.+|++. ..+.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            666 44444445666666666666666 45554444555666666666433 34444556666666666666654 3345


Q ss_pred             hccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878          422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       422 ~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  471 (496)
                      .++.++.++.+ ++++|.++ .++. ++.+.++++|++++|.++...|..
T Consensus       250 ~~~~l~~l~~L-~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETL-DLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhcccccccee-cccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            55666666666 66666666 3333 566666666666666666554443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=1.1e-14  Score=143.58  Aligned_cols=192  Identities=34%  Similarity=0.508  Sum_probs=132.2

Q ss_pred             CccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEecc
Q 035878          284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLN  363 (496)
Q Consensus       284 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  363 (496)
                      .-...|++.|++. ++|..+..+-.|+.+.+..|.+. .+|..+.++..|+++|++.|+++ ..|..+..++ |+.|.++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3344566666665 55666666666777777777666 56667777777777777777776 5666666665 7777777


Q ss_pred             CCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCcc
Q 035878          364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE  443 (496)
Q Consensus       364 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~  443 (496)
                      +|+++ .+|..++....|..||.+.|++. .+|..++.+.+|+.|++..|++. .+|..++. -.|..| |+|+|+++ .
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~l-DfScNkis-~  225 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRL-DFSCNKIS-Y  225 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeee-ecccCcee-e
Confidence            77776 66777777777777788877777 56667777777788888877776 66666663 346667 88888877 6


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhhcCC---CCCEEeCcCC
Q 035878          444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML---SLVAVNLSYN  486 (496)
Q Consensus       444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N  486 (496)
                      ||..|.+|+.|++|-|.+|.++ ..|..+...-   =.++|+..-+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            7777888888888888888877 4455443322   2355555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.38  E-value=1.1e-12  Score=132.96  Aligned_cols=199  Identities=33%  Similarity=0.473  Sum_probs=134.3

Q ss_pred             eEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCC-CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC
Q 035878          192 VLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGG-KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE  270 (496)
Q Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  270 (496)
                      .+.+..+.+... ...+..++.++.|++.+|.++.+|....... +|+.|+++.|++. .+|..+..+++|+.|+++.|+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            577777776422 3334456788899999999888888877774 8888888888877 344567778888888888888


Q ss_pred             CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchh
Q 035878          271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ  350 (496)
Q Consensus       271 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  350 (496)
                      ++.. |...+..++|+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..
T Consensus       175 l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         175 LSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence            7743 333335677777888877776 44444445555777777777533 34455666677777777777765 33556


Q ss_pred             hcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878          351 IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ  398 (496)
Q Consensus       351 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  398 (496)
                      ++.++++++|++++|.++. ++. ++...+++.|++++|.+....|..
T Consensus       251 ~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         251 IGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence            6666777777777777763 333 666677777777777776555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=3.9e-14  Score=139.84  Aligned_cols=175  Identities=31%  Similarity=0.512  Sum_probs=157.9

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEE
Q 035878          306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLD  385 (496)
Q Consensus       306 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  385 (496)
                      +.--...|++.|++. ++|..+..+-.|+.+.++.|.+. .+|..+.++..|++++|+.|+++ ..|..++.+ -|+.|.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence            344456789999998 78888888889999999999998 88999999999999999999998 788888876 589999


Q ss_pred             ccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       386 Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      +++|+++ .+|..++....|..||.+.|++. .+|..++.+.+|+.+ .+..|++. .+|..+..+ .|..||+|.|+++
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l-~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL-NVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH-HHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            9999999 78888998999999999999997 889999999999999 99999999 678888855 4899999999999


Q ss_pred             cccchhhhcCCCCCEEeCcCCCCcc
Q 035878          466 GEIPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       466 ~~~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                       .+|..|..|..|++|-|.+|+|..
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCC
Confidence             899999999999999999999974

>PLN03150 hypothetical protein; Provisional

Probab=99.31  E-value=4.8e-12  Score=134.66  Aligned_cols=113  Identities=42%  Similarity=0.661  Sum_probs=98.4

Q ss_pred             CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878          380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL  459 (496)
Q Consensus       380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L  459 (496)
                      .++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.| +|++|+++|.+|..++++++|++|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L-dLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE-ECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            36788999999999999999999999999999999999999989999999998 99999999999999999999999999


Q ss_pred             ccCcCCcccchhhhcC-CCCCEEeCcCCCCcccCC
Q 035878          460 SHNNLSGEIPASLSSM-LSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       460 s~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip  493 (496)
                      ++|+++|.+|..+... .++..+++++|...+.+|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999888764 467788999887555455

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=1.2e-12  Score=122.45  Aligned_cols=198  Identities=22%  Similarity=0.294  Sum_probs=87.5

Q ss_pred             cCCCCCCcEEEccCCCCCCccccc----cCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCC
Q 035878          255 LKSCSSLYRVRLESNELTGDLEQD----FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL  330 (496)
Q Consensus       255 l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  330 (496)
                      +..+++|+.++|+.|-+....+..    +..+..|++|.|.+|.+...--..++.  .|..|.         ...-.+.-
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~  156 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASK  156 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCC
Confidence            445556666666666665433332    334566667777666654211111100  000000         00111223


Q ss_pred             CCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC----Chhh
Q 035878          331 SQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQ  398 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~  398 (496)
                      ++|+++....|++...    +...|...+.|+.+.++.|.+...    +...+..+++|+.|||.+|.++..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4455555555554421    222344445555555555544311    112334455555555555555422    2233


Q ss_pred             hhCCCCCCEEeccCccCCccCChhcc-----CCccccccccccCCcCCcc----chhhhcCCCCCCEEEcccCcC
Q 035878          399 IGELRDLRSLSLSQNNLNGTIPFQIG-----NLVGLQDLLDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNL  464 (496)
Q Consensus       399 l~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~LL~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l  464 (496)
                      ++.+++|++|++++|.+...-...+.     ..+.|+.+ .+.+|.++..    +-..+...+.|+.|+|++|++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl-~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL-ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCcee-ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            44455555555555555433222221     23445555 5555555421    222333455555566666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=4.7e-12  Score=116.06  Aligned_cols=128  Identities=31%  Similarity=0.374  Sum_probs=57.4

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEc
Q 035878          307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL  386 (496)
Q Consensus       307 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  386 (496)
                      +.|+++|+++|.++ .+.....-.|.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+..+-.++-++++|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            34444455544444 222333334455555555555441 1 12444455555555555544 22333334444555555


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCccCCcc-CChhccCCccccccccccCCcCC
Q 035878          387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT-IPFQIGNLVGLQDLLDLSYNSLT  441 (496)
Q Consensus       387 s~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~LL~Ls~N~l~  441 (496)
                      ++|.+...  ..+..+-+|..||+++|++... --..+++++-|+.+ .|.+|.+.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l-~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL-RLTGNPLA  412 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH-hhcCCCcc
Confidence            55554321  2244444555555555544321 11234555555555 55555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=5.2e-12  Score=118.30  Aligned_cols=66  Identities=27%  Similarity=0.365  Sum_probs=38.9

Q ss_pred             CCCCCCCCCEEEccCCCCccc----CCccccCCCCCceEecccCcCCcc----cCc-------cCCCCCCCCEEECCCCC
Q 035878          159 EIGNCKLLTLLALDGNFLSGP----IPSSLGNLSDLAVLAVASNQLSGE----IPA-------NIGTLSKLTDLHLFINK  223 (496)
Q Consensus       159 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~-------~l~~l~~L~~L~L~~n~  223 (496)
                      .+.....+++++|++|.|.-.    +...+.+.++|+..++++ .++|.    +|+       .+..+++|+++|||+|-
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            345567788888888877532    334455667777777765 33332    232       23345566666666665


Q ss_pred             Cc
Q 035878          224 LS  225 (496)
Q Consensus       224 l~  225 (496)
                      +.
T Consensus       104 ~G  105 (382)
T KOG1909|consen  104 FG  105 (382)
T ss_pred             cC
Confidence            54

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.7e-11  Score=112.42  Aligned_cols=132  Identities=29%  Similarity=0.383  Sum_probs=97.6

Q ss_pred             CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEE
Q 035878          329 SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSL  408 (496)
Q Consensus       329 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L  408 (496)
                      ..+.|+++|+++|.|+ .+.++..-.|.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+..+-..+-++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3457888888888887 667777778888888888888873 2 34777888888888888887 455555667788888


Q ss_pred             eccCccCCccCChhccCCccccccccccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcc
Q 035878          409 SLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       409 ~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      .|++|.+..  -..++.+-+|..| |+++|+|... -...+++++-|+.+.|.+|++.+.
T Consensus       358 ~La~N~iE~--LSGL~KLYSLvnL-Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIET--LSGLRKLYSLVNL-DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHhh--hhhhHhhhhheec-cccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            888887752  2245666677777 8888887742 224577888888888888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.10  E-value=7.8e-11  Score=128.27  Aligned_cols=290  Identities=23%  Similarity=0.224  Sum_probs=167.2

Q ss_pred             CCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC--CcccCCccccCCCCCceEecccCcCCcccCccCCCCCCC
Q 035878          137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF--LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL  214 (496)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (496)
                      .+....|...+-+|.+. .++... .+++|++|-+..|.  +.......|..++.|++|||++|.--+.+|..++.+-+|
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            34456677777777665 223222 34478888887775  443334446678888888888876556788888888888


Q ss_pred             CEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCC--CccccccCCCCCccEEEccc
Q 035878          215 TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT--GDLEQDFGIYPNLTYIDLSY  292 (496)
Q Consensus       215 ~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~  292 (496)
                      ++|+++++.+..+|..+.++.+|.+|++..+.....+|.....+++|++|.+......  ...-..+..+.+|+.+....
T Consensus       598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            8888888888888888888888888888877655555666666888888887765422  11222333444454444433


Q ss_pred             CcccccCCcCcCCCCCCC----EEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcC------CCCCCEEec
Q 035878          293 NRLQGEVSPKWGKCQKLT----LLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGN------LTELSTLSL  362 (496)
Q Consensus       293 n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L  362 (496)
                      ...  .+-..+..+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+..........      ++++..+.+
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            222  1111122222222    2222222222 33445667778888888887775322211111      222333333


Q ss_pred             cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCcc-CChhccCCcccccc
Q 035878          363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT-IPFQIGNLVGLQDL  432 (496)
Q Consensus       363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L  432 (496)
                      .++..- ..+.+....++|+.|.+..+.....+......+..+..+.+..+.+.+. .-...+.++++..+
T Consensus       755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~  824 (889)
T KOG4658|consen  755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL  824 (889)
T ss_pred             hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec
Confidence            333222 2233344567888888887776655555566666666666666666655 33344455554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.1e-11  Score=117.29  Aligned_cols=208  Identities=23%  Similarity=0.162  Sum_probs=120.7

Q ss_pred             CCCCCCcEEEccCCcCcccCC-cCCCCCCCCCEEEccCCCCcc--cCCccccCCCCCceEecccCcCCcccCccC-CCCC
Q 035878          137 TGLLGLKNFLLQDNMLSGRIP-EEIGNCKLLTLLALDGNFLSG--PIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLS  212 (496)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~  212 (496)
                      .++.+|+.+.|.++.+..... .....|++++.|||+.|-|..  .+......+++|+.|+++.|++........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456778888888887763221 355678888888888887652  223334578888888888888763322221 2467


Q ss_pred             CCCEEECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcc-ccccCCCCCccEEE
Q 035878          213 KLTDLHLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL-EQDFGIYPNLTYID  289 (496)
Q Consensus       213 ~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  289 (496)
                      +|+.|.++.|.++.  +...+..+|+|+.|++..|...+........++.|++|+|++|++-... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            78888888888775  4444555677777777777432222333445566777777777664321 12345566666666


Q ss_pred             cccCcccccC-CcC-----cCCCCCCCEEEccCCccccc-CCcccCCCCCCCEEEccCCcCc
Q 035878          290 LSYNRLQGEV-SPK-----WGKCQKLTLLGLAGNSIGGK-IPAEIGSLSQLVVLDLSSNQLS  344 (496)
Q Consensus       290 ls~n~l~~~~-~~~-----~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~  344 (496)
                      ++.+.+...- |+.     ....++|++|++..|++... .-..+..+++|+.|.+..|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            6666655321 111     13345555555555555321 0112223344444454444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.3e-10  Score=102.18  Aligned_cols=126  Identities=30%  Similarity=0.395  Sum_probs=33.1

Q ss_pred             CCCCCCEEEccCCcCccccchhhc-CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhh-hCCCCCC
Q 035878          329 SLSQLVVLDLSSNQLSGEIPAQIG-NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI-GELRDLR  406 (496)
Q Consensus       329 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~  406 (496)
                      +..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+++. +...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            33455555555555552 2 2233 345555555555555522  234445555555555555553 22222 2345555


Q ss_pred             EEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc---chhhhcCCCCCEEeC
Q 035878          407 SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI---PASLSSMLSLVAVNL  483 (496)
Q Consensus       407 ~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~l  483 (496)
                      +|++++|++...-                        .-..+..+++|++|+|.+|+++..-   ...+..+++|+.||-
T Consensus        92 ~L~L~~N~I~~l~------------------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLN------------------------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCC------------------------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChH------------------------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            5555555553210                        1133455666666666666665321   123455666666653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.7e-11  Score=116.60  Aligned_cols=65  Identities=23%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             CCCCCCEEEccCCCCcccCC-ccccCCCCCceEecccCcCCccc--CccCCCCCCCCEEECCCCCCcc
Q 035878          162 NCKLLTLLALDGNFLSGPIP-SSLGNLSDLAVLAVASNQLSGEI--PANIGTLSKLTDLHLFINKLSG  226 (496)
Q Consensus       162 ~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~  226 (496)
                      ++.+|+.+.|.++......- .....|++++.|||+.|-+....  -.....+++|+.|+++.|++..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence            45556666666555431110 23445556666666665544211  1223345556666665555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=3.9e-10  Score=99.12  Aligned_cols=110  Identities=38%  Similarity=0.480  Sum_probs=43.0

Q ss_pred             cCCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhh-cCCCC
Q 035878          303 WGKCQKLTLLGLAGNSIGGKIPAEIG-SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLN  380 (496)
Q Consensus       303 ~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  380 (496)
                      +.++.++++|+|.+|.|+..  +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+++. +...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            45566899999999999843  3455 578999999999999843  357789999999999999984 44444 46899


Q ss_pred             CCEEEccCCcCCCC-ChhhhhCCCCCCEEeccCccCCc
Q 035878          381 LDSLDLSMNRLSGP-IPKQIGELRDLRSLSLSQNNLNG  417 (496)
Q Consensus       381 L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~  417 (496)
                      |++|++++|++... .-..+..+++|+.|++.+|+++.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            99999999999743 12457789999999999998873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.97  E-value=4.3e-11  Score=121.88  Aligned_cols=263  Identities=26%  Similarity=0.264  Sum_probs=128.5

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      .++.++...+...+.--. ...+..++.+++..|.+.. +-..+..+.+|+.|++.+|.+.. +...+..+++|++|+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecc
Confidence            345555555443321111 1345566666677776652 33345666777777777777763 23225567777777777


Q ss_pred             CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccEEEcccCcccccC
Q 035878          221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      +|.|+.+. .+..++.|+.|++.+|.++..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+... 
T Consensus       127 ~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-  201 (414)
T KOG0531|consen  127 FNKITKLE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-  201 (414)
T ss_pred             cccccccc-chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-
Confidence            77776642 233444566666666666532  234445566666666666554332 1 24455555556665555422 


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCC--CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLS--QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA  377 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  377 (496)
                       ..+..+..+..+++..|.++..-+  +..+.  +|+.+++++|++. ..+..+..+.++..+++.+|++...  ..+..
T Consensus       202 -~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~  275 (414)
T KOG0531|consen  202 -EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLER  275 (414)
T ss_pred             -cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccc
Confidence             222233333444555555542211  11112  2555566666554 2223344555555555555555422  12223


Q ss_pred             CCCCCEEEccCCcCCCC---Chhh-hhCCCCCCEEeccCccCCc
Q 035878          378 LLNLDSLDLSMNRLSGP---IPKQ-IGELRDLRSLSLSQNNLNG  417 (496)
Q Consensus       378 l~~L~~L~Ls~n~l~~~---~~~~-l~~~~~L~~L~Ls~n~l~~  417 (496)
                      ...+..+....|.+...   .... ....+.++.+.+..|.+..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            33444444444444311   0010 2334455555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1e-10  Score=119.16  Aligned_cols=196  Identities=27%  Similarity=0.267  Sum_probs=94.9

Q ss_pred             CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEE
Q 035878          210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID  289 (496)
Q Consensus       210 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  289 (496)
                      .+..++.+.+..|.+..+-..+..+.+|+.+++..|++... ...+..+++|++|++++|.++...  .+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            45566666677777666444455566666666666666532 111445556666666666655432  233444455566


Q ss_pred             cccCcccccCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCc
Q 035878          290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS  368 (496)
Q Consensus       290 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  368 (496)
                      +++|.++..  ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence            666555532  233335555555555555543322 1 23445555555555554411  12222333333355555444


Q ss_pred             cccchhhcCCC--CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878          369 GPIPEEIGALL--NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       369 ~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      ..-+  +..+.  .|+.+++++|++. ..+..+..+..+..+++.+|++.
T Consensus       222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            2211  11111  1455555555554 22233444455555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=4.3e-10  Score=122.56  Aligned_cols=269  Identities=23%  Similarity=0.242  Sum_probs=161.6

Q ss_pred             CCCCCcEEEccCCc--CcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          138 GLLGLKNFLLQDNM--LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       138 ~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      .+++|++|-+.+|.  +....++.|..++.|++|||++|.=-+.+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            44578888888886  44344455777888999999888766688888888889999999988887 7888888888899


Q ss_pred             EEECCCCCCcc-ccccccCCCCCcEEecCCCccc--CCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCcc----EE
Q 035878          216 DLHLFINKLSG-LPPQVCKGGKLINFTASFNHFS--GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT----YI  288 (496)
Q Consensus       216 ~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L  288 (496)
                      +|++..+.-.. +|.....+.+|++|.+......  ...-..+.++.+|+.+.......  .+-..+..++.|.    .+
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l  699 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL  699 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence            99888876544 5455555888888888665421  12223344555555555533322  1111222233333    22


Q ss_pred             EcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCC------CCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878          289 DLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL------SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL  362 (496)
Q Consensus       289 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  362 (496)
                      .+.++... ..+..+..+.+|+.|.+.++.+......+....      +++..+...++..- ..+.+....++|+.|.+
T Consensus       700 ~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l  777 (889)
T KOG4658|consen  700 SIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSL  777 (889)
T ss_pred             hhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEE
Confidence            22222222 334556778888888888887764332222211      12222222222211 12233345588999999


Q ss_pred             cCCcCccccchhhcCCCCCCEEEccCCcCCCC-ChhhhhCCCCCCEEecc
Q 035878          363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGELRDLRSLSLS  411 (496)
Q Consensus       363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~Ls  411 (496)
                      ..+.....+......+..+..+.+..+.+.+. .-...+.++++..+.++
T Consensus       778 ~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~  827 (889)
T KOG4658|consen  778 VSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS  827 (889)
T ss_pred             ecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence            88877666666666666777666666666654 23334444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=3.1e-09  Score=76.76  Aligned_cols=59  Identities=29%  Similarity=0.411  Sum_probs=33.7

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCc
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQ  199 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  199 (496)
                      +|++|++++|.++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555566555554444555555666666666555555555555555555555555554

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.83  E-value=3.9e-09  Score=69.98  Aligned_cols=40  Identities=33%  Similarity=0.859  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHhcCC-C-CCCCCCCCCCCCCCCCCCCCCCccccceeeC
Q 035878           28 LTETEALLKWKETLV-N-QSIVQSWVIPASNSSNSTTPSPCRWSGIVCN   74 (496)
Q Consensus        28 ~~~~~~ll~~k~~~~-~-~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~   74 (496)
                      .+|++||++||+++. + .+.+.+|+..+       .++||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-------~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-------DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---------S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-------CCCCeeeccEEeC
Confidence            469999999999998 4 58899998641       1699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=1.8e-09  Score=77.97  Aligned_cols=60  Identities=40%  Similarity=0.572  Sum_probs=43.5

Q ss_pred             cccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCC
Q 035878          428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL  488 (496)
Q Consensus       428 ~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  488 (496)
                      +|+++ ++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L-~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESL-DLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEE-EETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEE-ECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45666 7777777755456777777777777777777766667777777777777777764

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=3.2e-09  Score=108.32  Aligned_cols=178  Identities=31%  Similarity=0.330  Sum_probs=120.2

Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCC-CCCCEEEccCCcCc----------cccchhhcCCCCCCEEeccCCcCc
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL-SQLVVLDLSSNQLS----------GEIPAQIGNLTELSTLSLNGNDIS  368 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~----------~~~~~~l~~l~~L~~L~Ls~n~l~  368 (496)
                      |-.+..+.+|+.|.+.++.+...  ..+..+ .+|+.|-- .|.+.          |.+...+ ....|...+.++|.++
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            55667788999999999887631  111111 13333322 22221          1111111 1245778888888887


Q ss_pred             cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCCh-hccCCccccccccccCCcCCccchhh
Q 035878          369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF-QIGNLVGLQDLLDLSYNSLTGEIPAQ  447 (496)
Q Consensus       369 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~LL~Ls~N~l~~~~p~~  447 (496)
                       .+..++.-++.++.|+|++|+++..  ..+..++.|++|||++|++. .+|. ....+. |+.| .+++|.++..  ..
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L-~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL-NLRNNALTTL--RG  249 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heee-eecccHHHhh--hh
Confidence             5666777788899999999999843  36888999999999999987 4553 233344 7777 9999988732  45


Q ss_pred             hcCCCCCCEEEcccCcCCcccc-hhhhcCCCCCEEeCcCCCCc
Q 035878          448 LEKLTSLQSMNLSHNNLSGEIP-ASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       448 l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~  489 (496)
                      +.++++|+.||+++|-+.+.-- .-+..+..|+.|+|.+|++.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7888999999999998876421 33566778889999999875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.1e-09  Score=98.85  Aligned_cols=84  Identities=21%  Similarity=0.235  Sum_probs=44.1

Q ss_pred             CCCEEECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC-CCCcc-ccccCCCCCccEE
Q 035878          213 KLTDLHLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE-LTGDL-EQDFGIYPNLTYI  288 (496)
Q Consensus       213 ~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L  288 (496)
                      .|+++||+...++.  +-.-+..+.+|+.|.+.++++...+...++.-.+|+.++++.+. ++... .-.+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46666666666554  33334445566666666666655555555555666666665542 22111 1123445555555


Q ss_pred             EcccCccc
Q 035878          289 DLSYNRLQ  296 (496)
Q Consensus       289 ~ls~n~l~  296 (496)
                      ++++|.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            55555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.45  E-value=1.8e-08  Score=82.39  Aligned_cols=134  Identities=31%  Similarity=0.394  Sum_probs=72.1

Q ss_pred             CCEEEccCCcCccccchh---hcCCCCCCEEeccCCcCccccchhhc-CCCCCCEEEccCCcCCCCChhhhhCCCCCCEE
Q 035878          333 LVVLDLSSNQLSGEIPAQ---IGNLTELSTLSLNGNDISGPIPEEIG-ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSL  408 (496)
Q Consensus       333 L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L  408 (496)
                      +..++|+.|++. .++..   +.....|+..+|++|.+. .+|..|. ..+.++.|++++|.++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            445566666554 23322   333345555566666666 3344333 3346666666666666 455556666666666


Q ss_pred             eccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhh
Q 035878          409 SLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASL  472 (496)
Q Consensus       409 ~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  472 (496)
                      +++.|.+. ..|..+..+.++-.| |..+|.+. .||..+-.-+..-..++.++.+.+.-+..+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~L-ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDML-DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHh-cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            66666665 455555556666666 66666665 444443322333334445555555544433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=9.3e-09  Score=94.67  Aligned_cols=58  Identities=21%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             CCcEEEccCCCCCCc-cccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878          260 SLYRVRLESNELTGD-LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN  317 (496)
Q Consensus       260 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  317 (496)
                      .|+++||++..++.. ....+..|.+|+.|.+.++++.+.+...++.-.+|+.++++.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            355555555544321 1112233444555555555554444444444445555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=4.7e-08  Score=80.03  Aligned_cols=133  Identities=22%  Similarity=0.330  Sum_probs=102.8

Q ss_pred             CCCCEEeccCCcCccccchhh---cCCCCCCEEEccCCcCCCCChhhh-hCCCCCCEEeccCccCCccCChhccCCcccc
Q 035878          355 TELSTLSLNGNDISGPIPEEI---GALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ  430 (496)
Q Consensus       355 ~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  430 (496)
                      ..+..++|+.|++- .+++..   .....|+..+|++|.+.. +|..| ..++.++.+++++|.++ .+|..+..++.|+
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            34667888888875 455544   445667788999999994 55545 45678999999999998 8899999999999


Q ss_pred             ccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878          431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       431 ~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                      .+ +++.|.+. ..|+.+..+.++-+||..+|.+. ++|..+-.-+..-..++.++.+.|.-|
T Consensus       104 ~l-Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  104 SL-NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             hc-ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            99 99999999 67888888999999999999987 566554444444555667777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=7.1e-08  Score=98.70  Aligned_cols=156  Identities=31%  Similarity=0.403  Sum_probs=111.4

Q ss_pred             CcccCCCCCCCEEEccCCcCccccchhhcC-CCCCCEEeccCCcCc----------cccchhhcCCCCCCEEEccCCcCC
Q 035878          324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGN-LTELSTLSLNGNDIS----------GPIPEEIGALLNLDSLDLSMNRLS  392 (496)
Q Consensus       324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~  392 (496)
                      |-.+....+|+.|.+.++.+...  ..+.. -.+|+.|.- .|.++          |.+...+. ...|.+.+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence            55566778899999999887631  11111 123444422 22222          11111111 236788899999998


Q ss_pred             CCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchh-hhcCCCCCCEEEcccCcCCcccchh
Q 035878          393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPA-QLEKLTSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       393 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~  471 (496)
                       .+..++.-++.++.|+|++|+++..  +.+..|+.|++| ||++|.+. .+|. ....+. |+.|.+++|.++..  ..
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhL-DlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHL-DLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhccccccc-ccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence             6777888889999999999999743  378889999999 99999999 5554 344555 99999999999843  56


Q ss_pred             hhcCCCCCEEeCcCCCCccc
Q 035878          472 LSSMLSLVAVNLSYNNLEGP  491 (496)
Q Consensus       472 l~~l~~L~~L~ls~N~l~g~  491 (496)
                      +.++.+|..||+++|-|+|.
T Consensus       250 ie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcc
Confidence            88999999999999988763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.6e-07  Score=86.70  Aligned_cols=83  Identities=19%  Similarity=0.186  Sum_probs=35.8

Q ss_pred             CCCCCEEECCCCCCcc---ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcc-ccccCCCCCcc
Q 035878          211 LSKLTDLHLFINKLSG---LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL-EQDFGIYPNLT  286 (496)
Q Consensus       211 l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  286 (496)
                      ++.++++||.+|.++.   |..-+.++|.|+.|+++.|.+...|...-....+|+.|-|.+..+.-.. ...+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3444445555544444   3333334444555555555444322211123345555555554443211 12233445555


Q ss_pred             EEEcccC
Q 035878          287 YIDLSYN  293 (496)
Q Consensus       287 ~L~ls~n  293 (496)
                      .|+++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            5555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=4.6e-07  Score=82.64  Aligned_cols=224  Identities=21%  Similarity=0.183  Sum_probs=103.8

Q ss_pred             ccCCCCCceEecccCcCCcccC----ccCCCCCCCCEEECCCCCCcc----cc-------ccccCCCCCcEEecCCCccc
Q 035878          184 LGNLSDLAVLAVASNQLSGEIP----ANIGTLSKLTDLHLFINKLSG----LP-------PQVCKGGKLINFTASFNHFS  248 (496)
Q Consensus       184 l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~----lp-------~~l~~l~~L~~L~l~~n~l~  248 (496)
                      +.-+..++.++|++|.|...-.    ..+.+-.+|+..+++.-....    ++       +.+.++++|+..+++.|.|.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3346677778888887764333    334455667776665532211    22       23445566666666666555


Q ss_pred             CCCCcc----cCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC
Q 035878          249 GPIPTS----LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP  324 (496)
Q Consensus       249 ~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  324 (496)
                      ...|+.    ++.-+.|++|.+++|.+....-..++.  .|.+  +.+|       .-...-+.|+.+....|++.....
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcH
Confidence            444432    234455555555555543221111110  0000  0000       011223455555555555432110


Q ss_pred             ----cccCCCCCCCEEEccCCcCccc-----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcC
Q 035878          325 ----AEIGSLSQLVVLDLSSNQLSGE-----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRL  391 (496)
Q Consensus       325 ----~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l  391 (496)
                          ..+..-..|+++.+..|.|.-.     +-..+..+.+|+.||+.+|-++-.    ....+...+.|+.|.+.+|-+
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence                1112223566666666655422     111233456666666666665522    122333445566666666666


Q ss_pred             CCCChhhh------hCCCCCCEEeccCccCCcc
Q 035878          392 SGPIPKQI------GELRDLRSLSLSQNNLNGT  418 (496)
Q Consensus       392 ~~~~~~~l------~~~~~L~~L~Ls~n~l~~~  418 (496)
                      +..-...+      ...++|..|...+|...+.
T Consensus       255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             ccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            53322211      1235666666666655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=1.5e-07  Score=85.76  Aligned_cols=223  Identities=19%  Similarity=0.211  Sum_probs=126.0

Q ss_pred             CCCCCCCCEEEccCCCCcccCC----ccccCCCCCceEecccCcCCcc----cC-------ccCCCCCCCCEEECCCCCC
Q 035878          160 IGNCKLLTLLALDGNFLSGPIP----SSLGNLSDLAVLAVASNQLSGE----IP-------ANIGTLSKLTDLHLFINKL  224 (496)
Q Consensus       160 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~l  224 (496)
                      +..+..++.++||+|.|.-.-.    ..+++-.+|+..++++- ++|.    ++       +.+.+||+|+..+|+.|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            4457889999999999864433    33456678998888763 3332    22       3457899999999999998


Q ss_pred             cc-ccc----cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878          225 SG-LPP----QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       225 ~~-lp~----~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      .. .|+    .+.+.+.|++|.+++|.+.-.-...++  +.|.+  |..|+       -...-|.|+.+....|++..-.
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~--la~nK-------Kaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFH--LAYNK-------KAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHH--HHHHh-------hhccCCCceEEEeccchhccCc
Confidence            76 443    355678999999999987521111111  00000  01110       1122244455555544443211


Q ss_pred             C----cCcCCCCCCCEEEccCCcccccCC-----cccCCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCc
Q 035878          300 S----PKWGKCQKLTLLGLAGNSIGGKIP-----AEIGSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGND  366 (496)
Q Consensus       300 ~----~~~~~~~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~  366 (496)
                      .    ..+..-..|+.+.+..|.|.-...     ..+..+.+|+.||+.+|.++-.    +...+..++.|+.|.+.+|-
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            0    011222455556665555442211     1223456777777777776522    23344556677777777776


Q ss_pred             Cccccchhh----c--CCCCCCEEEccCCcCCCC
Q 035878          367 ISGPIPEEI----G--ALLNLDSLDLSMNRLSGP  394 (496)
Q Consensus       367 l~~~~~~~~----~--~l~~L~~L~Ls~n~l~~~  394 (496)
                      ++......+    .  ..++|..|-..+|...+.
T Consensus       254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            654332222    1  246677777777776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=7.7e-07  Score=82.25  Aligned_cols=229  Identities=18%  Similarity=0.167  Sum_probs=130.6

Q ss_pred             cCCCCCCcEEEccCCCCCCccc-ccc-CCCCCccEEEcccCcccc--cCCcCcCCCCCCCEEEccCCcccccCCcccCCC
Q 035878          255 LKSCSSLYRVRLESNELTGDLE-QDF-GIYPNLTYIDLSYNRLQG--EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL  330 (496)
Q Consensus       255 l~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  330 (496)
                      +.....++.+.+.++.+...-. ..| ..++.++.+|+.+|.++.  ++-..+.+++.|+.|+++.|.+...+-..-...
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~  120 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL  120 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence            3334445556666665543221 112 235678888888888763  333445677888888888887765443221345


Q ss_pred             CCCCEEEccCCcCcc-ccchhhcCCCCCCEEeccCCcCccc--cchhhcC-CCCCCEEEccCCcCCC--CChhhhhCCCC
Q 035878          331 SQLVVLDLSSNQLSG-EIPAQIGNLTELSTLSLNGNDISGP--IPEEIGA-LLNLDSLDLSMNRLSG--PIPKQIGELRD  404 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~~l~~~~~  404 (496)
                      .+|++|-|.+..+.- .....+..+|.+++|+++.|.+...  ..+.... -+.+++|....|...-  .+-..-..+++
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            577777777766542 2334456677777777777743211  0011111 1234444444443210  00001123567


Q ss_pred             CCEEeccCccCCccC-ChhccCCccccccccccCCcCCc-cchhhhcCCCCCCEEEcccCcCCcccc----h--hhhcCC
Q 035878          405 LRSLSLSQNNLNGTI-PFQIGNLVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSMNLSHNNLSGEIP----A--SLSSML  476 (496)
Q Consensus       405 L~~L~Ls~n~l~~~~-p~~~~~l~~L~~LL~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~--~l~~l~  476 (496)
                      +..+.+..|.+...- ......++.+..| +|+.|+|.. ..-+.+.++++|.-|.+++|++.....    .  -++.++
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~L-nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~  279 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCL-NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT  279 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhh-hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence            778888888775322 1234455666666 999998874 234667889999999999998864332    2  246777


Q ss_pred             CCCEEeCc
Q 035878          477 SLVAVNLS  484 (496)
Q Consensus       477 ~L~~L~ls  484 (496)
                      +++.|+=+
T Consensus       280 ~v~vLNGs  287 (418)
T KOG2982|consen  280 KVQVLNGS  287 (418)
T ss_pred             ceEEecCc
Confidence            77777644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=7.4e-06  Score=54.32  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=15.1

Q ss_pred             CCCEEEccCCCCcccCCccccCCCCCceEecccCcCC
Q 035878          165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS  201 (496)
Q Consensus       165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  201 (496)
                      +|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=8.7e-06  Score=53.98  Aligned_cols=36  Identities=33%  Similarity=0.640  Sum_probs=16.5

Q ss_pred             CCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878          453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  489 (496)
                      +|++|++++|+++ .+|..+..|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 33434455555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=7.3e-05  Score=74.07  Aligned_cols=136  Identities=24%  Similarity=0.292  Sum_probs=85.3

Q ss_pred             cCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCC-cCccccchhhcCCCCC
Q 035878          303 WGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN-DISGPIPEEIGALLNL  381 (496)
Q Consensus       303 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  381 (496)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.++++.--..+|..+  .++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            345688999999999887 4452   23479999998855434666554  368999999998 544 4443      57


Q ss_pred             CEEEccCCcCCC--CChhhhhCCCCCCEEeccCccCC--ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEE
Q 035878          382 DSLDLSMNRLSG--PIPKQIGELRDLRSLSLSQNNLN--GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM  457 (496)
Q Consensus       382 ~~L~Ls~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L  457 (496)
                      +.|+++.+....  .+|.      +|+.|.+.+++..  ..+|..  --++|++| ++++|... ..|..+.  .+|++|
T Consensus       115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L-~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTL-SLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEE-EecCCCcc-cCccccc--ccCcEE
Confidence            778887766531  2333      4566666443211  011111  11567778 88888765 4454443  578888


Q ss_pred             EcccCc
Q 035878          458 NLSHNN  463 (496)
Q Consensus       458 ~Ls~N~  463 (496)
                      +++.|.
T Consensus       183 ~ls~n~  188 (426)
T PRK15386        183 TLHIEQ  188 (426)
T ss_pred             Eecccc
Confidence            888763

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00012  Score=72.58  Aligned_cols=136  Identities=20%  Similarity=0.318  Sum_probs=89.6

Q ss_pred             cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC-cCCCCChhhhhCCCCC
Q 035878          327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN-RLSGPIPKQIGELRDL  405 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~~~~L  405 (496)
                      +..+.+++.|++++|.++ .+|.   -.++|++|.++++.--..+|..+  .++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            445689999999999887 5562   23479999998854334667655  358999999998 554 4553      57


Q ss_pred             CEEeccCccCC--ccCChhccCCccccccccccCCc-CC-ccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEE
Q 035878          406 RSLSLSQNNLN--GTIPFQIGNLVGLQDLLDLSYNS-LT-GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAV  481 (496)
Q Consensus       406 ~~L~Ls~n~l~--~~~p~~~~~l~~L~~LL~Ls~N~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  481 (496)
                      +.|+++.+...  +.+|.      +|+.| .+.+++ .. ..+|..+  -++|++|++++|... ..|..+.  .+|++|
T Consensus       115 e~L~L~~n~~~~L~~LPs------sLk~L-~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN------GLTSL-SINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             ceEEeCCCCCcccccCcc------hHhhe-ecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence            78888776543  23443      45556 664332 11 1122211  158999999999876 4455444  589999


Q ss_pred             eCcCCC
Q 035878          482 NLSYNN  487 (496)
Q Consensus       482 ~ls~N~  487 (496)
                      +++.|.
T Consensus       183 ~ls~n~  188 (426)
T PRK15386        183 TLHIEQ  188 (426)
T ss_pred             Eecccc
Confidence            998873

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=2.2e-05  Score=84.09  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccC-CCCcccCCCCCCcEEEccCCCCCCcc--c----cccCCC
Q 035878          210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSG-PIPTSLKSCSSLYRVRLESNELTGDL--E----QDFGIY  282 (496)
Q Consensus       210 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--~----~~~~~l  282 (496)
                      ++|+|..||+++++++.+ .++.++++|+.|.+.+=.+.. ..-..+.++++|++||++........  .    +.-..+
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L  249 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL  249 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence            344444444444444443 333444444444443333321 11123444555555555544332211  0    111235


Q ss_pred             CCccEEEcccCcccc
Q 035878          283 PNLTYIDLSYNRLQG  297 (496)
Q Consensus       283 ~~L~~L~ls~n~l~~  297 (496)
                      |+|+.||.|+..+.+
T Consensus       250 peLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  250 PELRFLDCSGTDINE  264 (699)
T ss_pred             ccccEEecCCcchhH
Confidence            666666666665554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.58  E-value=0.00032  Score=58.71  Aligned_cols=104  Identities=12%  Similarity=0.181  Sum_probs=50.4

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      |.++++|+.+.+.. .+.......|.++++|+.+++..+ +.......|..+++|+.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            56677777777764 455555566777777777777664 5434445566666777777755 33333345566677777


Q ss_pred             EEECCCCCCccccccccCCCCCcEEecC
Q 035878          216 DLHLFINKLSGLPPQVCKGGKLINFTAS  243 (496)
Q Consensus       216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~  243 (496)
                      .+++..+ +..++...+.-.+++.+.+.
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~~l~~i~~~  111 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNCNLKEINIP  111 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT-T--EEE-T
T ss_pred             ccccCcc-ccEEchhhhcCCCceEEEEC
Confidence            7777554 44444433333345544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=6.8e-05  Score=80.35  Aligned_cols=148  Identities=26%  Similarity=0.316  Sum_probs=95.9

Q ss_pred             CCCCEEEccCCcCc-cccchhh-cCCCCCCEEeccCCcCcc-ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCE
Q 035878          331 SQLVVLDLSSNQLS-GEIPAQI-GNLTELSTLSLNGNDISG-PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRS  407 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~  407 (496)
                      .+|+.|++++.... ...|..+ ..+|+|+.|.+++-.+.. .......++++|..||+|+.+++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            47888888886533 2223333 357888888888866642 2233445678888888888888743  56888888888


Q ss_pred             EeccCccCCc-cCChhccCCccccccccccCCcCCcc--ch----hhhcCCCCCCEEEcccCcCCcccchhhh-cCCCCC
Q 035878          408 LSLSQNNLNG-TIPFQIGNLVGLQDLLDLSYNSLTGE--IP----AQLEKLTSLQSMNLSHNNLSGEIPASLS-SMLSLV  479 (496)
Q Consensus       408 L~Ls~n~l~~-~~p~~~~~l~~L~~LL~Ls~N~l~~~--~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~  479 (496)
                      |.+.+=.+.. ..-..+.++++|+.| |+|..+....  +.    +.-..++.|+.||.|+..+.+.+-+.+. .-++|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vL-DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVL-DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCee-eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            8887766653 222356678888888 8887765532  11    1223578888888888888766554432 233444


Q ss_pred             EE
Q 035878          480 AV  481 (496)
Q Consensus       480 ~L  481 (496)
                      .+
T Consensus       279 ~i  280 (699)
T KOG3665|consen  279 QI  280 (699)
T ss_pred             hh
Confidence            43

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.50  E-value=0.00045  Score=57.79  Aligned_cols=37  Identities=11%  Similarity=0.268  Sum_probs=12.7

Q ss_pred             CcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878          302 KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS  339 (496)
Q Consensus       302 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  339 (496)
                      .|..+++|+.+.+..+ +.......|.++++++.+.+.
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             hccccccccccccccc-ccccceeeeeccccccccccc
Confidence            3444444444444332 332222334444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00025  Score=62.47  Aligned_cols=60  Identities=23%  Similarity=0.210  Sum_probs=29.2

Q ss_pred             CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc
Q 035878          165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG  226 (496)
Q Consensus       165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (496)
                      +...+||++|.+.  --..|..++.|.+|.+++|+|+...|.--.-+++|+.|.+.+|.+..
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~  102 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE  102 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence            4445555555543  11224445555555555555554333333334555555555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00033  Score=61.73  Aligned_cols=82  Identities=22%  Similarity=0.185  Sum_probs=38.4

Q ss_pred             cEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCccc-CccCCCCCCCCEEECCC
Q 035878          143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEI-PANIGTLSKLTDLHLFI  221 (496)
Q Consensus       143 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~  221 (496)
                      ..+||++|.+...  ..|..++.|.+|.+++|+|+...|.--..+++|+.|.+.+|.+.... -+.+..||+|++|.+-+
T Consensus        45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            3444444444311  12444555555555555555444433333455555555555544110 12234455555555555


Q ss_pred             CCCcc
Q 035878          222 NKLSG  226 (496)
Q Consensus       222 n~l~~  226 (496)
                      |..+.
T Consensus       123 Npv~~  127 (233)
T KOG1644|consen  123 NPVEH  127 (233)
T ss_pred             Cchhc
Confidence            55543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.26  E-value=8.1e-06  Score=79.04  Aligned_cols=85  Identities=18%  Similarity=0.124  Sum_probs=41.2

Q ss_pred             CCCCCCcEEEccCCc-CcccCCcCC-CCCCCCCEEEccCC-CCcccCCccc-cCCCCCceEecccC-cCCcccC-ccCCC
Q 035878          137 TGLLGLKNFLLQDNM-LSGRIPEEI-GNCKLLTLLALDGN-FLSGPIPSSL-GNLSDLAVLAVASN-QLSGEIP-ANIGT  210 (496)
Q Consensus       137 ~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~Ls~n-~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p-~~l~~  210 (496)
                      .+++++++|++.++. +++..-..+ ..|++|++|++..| .++...-..+ ..+++|++|+++.+ .+++.-- ....+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            456666666666654 222222222 34667777777663 3443333322 25666777777665 2333111 12234


Q ss_pred             CCCCCEEECCC
Q 035878          211 LSKLTDLHLFI  221 (496)
Q Consensus       211 l~~L~~L~L~~  221 (496)
                      +..++.+.+.+
T Consensus       241 ~~~l~~~~~kG  251 (483)
T KOG4341|consen  241 CKELEKLSLKG  251 (483)
T ss_pred             chhhhhhhhcc
Confidence            44555554444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00051  Score=63.00  Aligned_cols=82  Identities=30%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             cCCCCCCCEEEccCC--cCccccchhhcCCCCCCEEeccCCcCccccchh---hcCCCCCCEEEccCCcCCCCC---hhh
Q 035878          327 IGSLSQLVVLDLSSN--QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE---IGALLNLDSLDLSMNRLSGPI---PKQ  398 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~---~~~  398 (496)
                      +..+++|++|.++.|  ++.+.++.....+|+|+++++++|++..  +..   +..+.+|..|++.+|..+...   -..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence            334555566666665  4444444444445666666666665541  222   233445556666665544321   122


Q ss_pred             hhCCCCCCEEec
Q 035878          399 IGELRDLRSLSL  410 (496)
Q Consensus       399 l~~~~~L~~L~L  410 (496)
                      |.-+++|++|+-
T Consensus       139 f~ll~~L~~LD~  150 (260)
T KOG2739|consen  139 FLLLPSLKYLDG  150 (260)
T ss_pred             HHHhhhhccccc
Confidence            334455555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.00  E-value=3.3e-05  Score=74.96  Aligned_cols=274  Identities=19%  Similarity=0.105  Sum_probs=119.0

Q ss_pred             CCCceEecccCcCCcccC--ccCCCCCCCCEEECCCCCCcc---ccccccCCCCCcEEecCCC-cccCCCCc-ccCCCCC
Q 035878          188 SDLAVLAVASNQLSGEIP--ANIGTLSKLTDLHLFINKLSG---LPPQVCKGGKLINFTASFN-HFSGPIPT-SLKSCSS  260 (496)
Q Consensus       188 ~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~l~~n-~l~~~~p~-~l~~l~~  260 (496)
                      ..|+.|.+.++.=.+.-+  ....+++++++|++.++...+   .-..-..+++|+++++..+ .++...-. ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            357777777765433222  233568888888887765322   2222234566666666653 23322111 1234566


Q ss_pred             CcEEEccCCC-CCCc-cccccCCCCCccEEEcccCcccccCCcCc----CCCCCCCEEEccCCc-ccccCCccc-CCCCC
Q 035878          261 LYRVRLESNE-LTGD-LEQDFGIYPNLTYIDLSYNRLQGEVSPKW----GKCQKLTLLGLAGNS-IGGKIPAEI-GSLSQ  332 (496)
Q Consensus       261 L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~L~~L~L~~n~-l~~~~~~~l-~~l~~  332 (496)
                      |++++++.+. +++. +...+.++..++.+.+.+|.=.+  .+.+    ..+..+.++++..+. ++...-..+ ..+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            6666666553 2221 11122233344444444332110  0011    122333444433332 222111011 23455


Q ss_pred             CCEEEccCCcCccc-c-chhhcCCCCCCEEeccCCc-Cccccchhh-cCCCCCCEEEccCCcCCC--CChhhhhCCCCCC
Q 035878          333 LVVLDLSSNQLSGE-I-PAQIGNLTELSTLSLNGND-ISGPIPEEI-GALLNLDSLDLSMNRLSG--PIPKQIGELRDLR  406 (496)
Q Consensus       333 L~~L~Ls~n~l~~~-~-~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~l~~~~~L~  406 (496)
                      |++++.+++.-.+. . -.--.++++|+.+-++.++ |+..--..+ .+++.|+.+++.++....  .+...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            66666665543211 1 1112345666666666653 221111111 234556666666554321  1112223456666


Q ss_pred             EEeccCccCC-cc--C--ChhccCCccccccccccCCcCC-ccchhhhcCCCCCCEEEcccCcC
Q 035878          407 SLSLSQNNLN-GT--I--PFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEKLTSLQSMNLSHNNL  464 (496)
Q Consensus       407 ~L~Ls~n~l~-~~--~--p~~~~~l~~L~~LL~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l  464 (496)
                      .+.++++... ++  .  ...-.....+..+ .|+++... ...-+.+..+++|+.+++-+++-
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~l-EL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVL-ELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhcccccccccee-eecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            6666655332 11  0  1111233445555 55555433 22333445556666666655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.00043  Score=63.47  Aligned_cols=109  Identities=26%  Similarity=0.273  Sum_probs=63.7

Q ss_pred             cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC--cCCCCChhhhhCCCCCCEEeccCccCCccCChh--
Q 035878          347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN--RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ--  422 (496)
Q Consensus       347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~--  422 (496)
                      +......+..|+.+++.+..++..  ..+..+++|++|.++.|  ++.+.++.....+++|+++++++|++..  +..  
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence            333344556677777777766632  24556778888888888  5555555555566888888888887752  222  


Q ss_pred             -ccCCccccccccccCCcCCccc---hhhhcCCCCCCEEEcc
Q 035878          423 -IGNLVGLQDLLDLSYNSLTGEI---PAQLEKLTSLQSMNLS  460 (496)
Q Consensus       423 -~~~l~~L~~LL~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls  460 (496)
                       +..+.+|..| |+.+|.-+..-   ...|.-+++|++||-.
T Consensus       111 pl~~l~nL~~L-dl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  111 PLKELENLKSL-DLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcchhhh-hcccCCccccccHHHHHHHHhhhhcccccc
Confidence             2334445555 66666554321   1234445555555433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.67  E-value=0.00011  Score=76.57  Aligned_cols=184  Identities=23%  Similarity=0.188  Sum_probs=76.8

Q ss_pred             CCCCCEEECCCCC-Ccc--ccccccCCCCCcEEecCCCc-ccCC-CCcccCCCCCCcEEEccCCCCCCc--cccccCCCC
Q 035878          211 LSKLTDLHLFINK-LSG--LPPQVCKGGKLINFTASFNH-FSGP-IPTSLKSCSSLYRVRLESNELTGD--LEQDFGIYP  283 (496)
Q Consensus       211 l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~  283 (496)
                      +++|+.|+++.+. ++.  +......+++|+.|.+..+. ++.. +-.....++.|++|+++.+.....  +......++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~  321 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP  321 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence            4555555555554 333  21111224555555544443 3321 112223455666666665544211  112223345


Q ss_pred             CccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc---ccCCcccCCCCCCCEEEccCCcCcccc-chhhcCCCCCCE
Q 035878          284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG---GKIPAEIGSLSQLVVLDLSSNQLSGEI-PAQIGNLTELST  359 (496)
Q Consensus       284 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~  359 (496)
                      +++.|.+....          .+..++.+.+.+..-.   .........+++++.+.+..+...... ...+.+++.|+ 
T Consensus       322 ~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-  390 (482)
T KOG1947|consen  322 NLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-  390 (482)
T ss_pred             chhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-
Confidence            55554432211          1333444443332211   112223455666777766666633221 23444555552 


Q ss_pred             EeccCCcCccccchhhcCCCCCCEEEccCCcCCCC-ChhhhhC-CCCCCEEeccCcc
Q 035878          360 LSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGE-LRDLRSLSLSQNN  414 (496)
Q Consensus       360 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~-~~~L~~L~Ls~n~  414 (496)
                      ..+...         ......++.|+++.+..... .-..... +..++.+++.++.
T Consensus       391 ~~l~~~---------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  391 ESLELR---------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             hHHHHH---------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            211111         11111266666666654311 1111111 4556666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00058  Score=63.07  Aligned_cols=99  Identities=24%  Similarity=0.248  Sum_probs=60.6

Q ss_pred             CCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccc-hhhhcCCCCCCEE
Q 035878          379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI-PAQLEKLTSLQSM  457 (496)
Q Consensus       379 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~-p~~l~~l~~L~~L  457 (496)
                      .+.+.|+.-+|.+.+.  .....++.|+.|.||-|+++..-|  +..|+.|++| .|..|.|.... -..+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkEl-YLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKEL-YLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHH-HHHhcccccHHHHHHHhcCchhhhH
Confidence            3455566666666532  234456667777777776653332  4566777777 77777666421 1345677888888


Q ss_pred             EcccCcCCcccch-----hhhcCCCCCEEe
Q 035878          458 NLSHNNLSGEIPA-----SLSSMLSLVAVN  482 (496)
Q Consensus       458 ~Ls~N~l~~~~p~-----~l~~l~~L~~L~  482 (496)
                      .|..|+-.|.-+.     .+.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877766543     244566676664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.28  E-value=0.0013  Score=68.46  Aligned_cols=111  Identities=28%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CCCCCcEEEccCCCCCCc--cccccCCCCCccEEEcccC-cccccC----CcCcCCCCCCCEEEccCCc-ccccCCcccC
Q 035878          257 SCSSLYRVRLESNELTGD--LEQDFGIYPNLTYIDLSYN-RLQGEV----SPKWGKCQKLTLLGLAGNS-IGGKIPAEIG  328 (496)
Q Consensus       257 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n-~l~~~~----~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~  328 (496)
                      .++.|+.+.+..+.-...  .......++.|+.|+++++ ......    ......+++|+.++++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356777777776643222  2234455677777777763 111111    1123445666667766665 4433322332


Q ss_pred             C-CCCCCEEEccCCc-Cccc-cchhhcCCCCCCEEeccCCcC
Q 035878          329 S-LSQLVVLDLSSNQ-LSGE-IPAQIGNLTELSTLSLNGNDI  367 (496)
Q Consensus       329 ~-l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l  367 (496)
                      . +++|++|.+..+. +++. +-.....+++|++|+++++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            2 5666666655555 3422 222234556666666665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.00022  Score=65.74  Aligned_cols=64  Identities=30%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc-chhhcCCCCCCEEeccCCcCccc
Q 035878          305 KCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI-PAQIGNLTELSTLSLNGNDISGP  370 (496)
Q Consensus       305 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~  370 (496)
                      .++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|...- -..+.++|+|+.|.|..|.-.|.
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence            344444444444444422  12334444444444444444210 11234455555555555544433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.08  E-value=0.00012  Score=75.03  Aligned_cols=83  Identities=27%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             ccEEEcccCcccccCC----cCcCCCCCCCEEEccCCcccccCCc----ccCCC-CCCCEEEccCCcCccc----cchhh
Q 035878          285 LTYIDLSYNRLQGEVS----PKWGKCQKLTLLGLAGNSIGGKIPA----EIGSL-SQLVVLDLSSNQLSGE----IPAQI  351 (496)
Q Consensus       285 L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~Ls~n~l~~~----~~~~l  351 (496)
                      +..+.+.+|.+.....    ..+.....|+.|++++|.+.+..-.    .+... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6666777776654322    2234456666666666666532111    11121 3455566666655532    33344


Q ss_pred             cCCCCCCEEeccCCcC
Q 035878          352 GNLTELSTLSLNGNDI  367 (496)
Q Consensus       352 ~~l~~L~~L~Ls~n~l  367 (496)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            4455566666666655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0031  Score=34.77  Aligned_cols=21  Identities=48%  Similarity=0.759  Sum_probs=13.7

Q ss_pred             CCCEEEcccCcCCcccchhhhc
Q 035878          453 SLQSMNLSHNNLSGEIPASLSS  474 (496)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~~l~~  474 (496)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3667777777777 66665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.24  E-value=0.0079  Score=33.13  Aligned_cols=12  Identities=33%  Similarity=0.368  Sum_probs=5.1

Q ss_pred             CcEEEccCCcCc
Q 035878          142 LKNFLLQDNMLS  153 (496)
Q Consensus       142 L~~L~L~~n~l~  153 (496)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.15  E-value=0.00024  Score=72.97  Aligned_cols=183  Identities=28%  Similarity=0.284  Sum_probs=110.6

Q ss_pred             CCCcEEEccCCCCCCcccc----ccCCCCCccEEEcccCcccccCCc----CcCCC-CCCCEEEccCCccccc----CCc
Q 035878          259 SSLYRVRLESNELTGDLEQ----DFGIYPNLTYIDLSYNRLQGEVSP----KWGKC-QKLTLLGLAGNSIGGK----IPA  325 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~L~~n~l~~~----~~~  325 (496)
                      ..+.++.|.+|.+......    .+...+.|+.|++++|.+.+..-.    .+... ..+++|++..|.+++.    +..
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            3477888888888754332    345678889999999988743211    22222 4677788888887754    344


Q ss_pred             ccCCCCCCCEEEccCCcCcc----ccchhhc----CCCCCCEEeccCCcCcccc----chhhcCCCC-CCEEEccCCcCC
Q 035878          326 EIGSLSQLVVLDLSSNQLSG----EIPAQIG----NLTELSTLSLNGNDISGPI----PEEIGALLN-LDSLDLSMNRLS  392 (496)
Q Consensus       326 ~l~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~l~  392 (496)
                      .+.....++.++++.|.+..    .++..+.    ...++++|.+.+|.++...    ...+...+. +..+++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            55667888999999988741    1222333    4667778888877776321    112233334 555777777766


Q ss_pred             CCC----hhhhhCC-CCCCEEeccCccCCccCC----hhccCCccccccccccCCcCCc
Q 035878          393 GPI----PKQIGEL-RDLRSLSLSQNNLNGTIP----FQIGNLVGLQDLLDLSYNSLTG  442 (496)
Q Consensus       393 ~~~----~~~l~~~-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~LL~Ls~N~l~~  442 (496)
                      +..    ...+..+ ..+++++++.|.++..-.    ..+..+..++++ .+++|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l-~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEEL-SLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHh-hcccCcccc
Confidence            431    2233334 556677777777664433    233445566666 677776664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.09  E-value=0.057  Score=27.56  Aligned_cols=14  Identities=36%  Similarity=0.472  Sum_probs=5.0

Q ss_pred             CCCEEECCCCCCcc
Q 035878          213 KLTDLHLFINKLSG  226 (496)
Q Consensus       213 ~L~~L~L~~n~l~~  226 (496)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.31  E-value=0.006  Score=55.12  Aligned_cols=88  Identities=23%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             hhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCC
Q 035878          374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS  453 (496)
Q Consensus       374 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~  453 (496)
                      .+......+.||++.|++. ..-..|+.++.+..++++.|++. ..|..+++...+..+ ++-.|..+ ..|.+++..+.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~-~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNA-ASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHH-Hhhccchh-hCCccccccCC
Confidence            3455567788888888876 23344666677788888888876 778888888888877 88777777 67888888888


Q ss_pred             CCEEEcccCcCC
Q 035878          454 LQSMNLSHNNLS  465 (496)
Q Consensus       454 L~~L~Ls~N~l~  465 (496)
                      ++++++.+|.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            888888888865

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.63  E-value=0.15  Score=29.13  Aligned_cols=22  Identities=45%  Similarity=0.665  Sum_probs=13.8

Q ss_pred             CCCCCEEECCCCCCcccccccc
Q 035878          211 LSKLTDLHLFINKLSGLPPQVC  232 (496)
Q Consensus       211 l~~L~~L~L~~n~l~~lp~~l~  232 (496)
                      +++|++|++++|+++.+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777766665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.63  E-value=0.15  Score=29.13  Aligned_cols=22  Identities=45%  Similarity=0.665  Sum_probs=13.8

Q ss_pred             CCCCCEEECCCCCCcccccccc
Q 035878          211 LSKLTDLHLFINKLSGLPPQVC  232 (496)
Q Consensus       211 l~~L~~L~L~~n~l~~lp~~l~  232 (496)
                      +++|++|++++|+++.+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777766665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.10  E-value=0.0092  Score=53.94  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=66.0

Q ss_pred             hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccc
Q 035878          350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL  429 (496)
Q Consensus       350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  429 (496)
                      .+......+.||++.|++. .....|+.++.+..||++.|++. ..|..+.....++.+++..|+.+ ..|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3556677788888888776 34455666777888888888877 66777777777788888888776 677788888888


Q ss_pred             cccccccCCcCC
Q 035878          430 QDLLDLSYNSLT  441 (496)
Q Consensus       430 ~~LL~Ls~N~l~  441 (496)
                      +++ ++-.|.+.
T Consensus       114 k~~-e~k~~~~~  124 (326)
T KOG0473|consen  114 KKN-EQKKTEFF  124 (326)
T ss_pred             chh-hhccCcch
Confidence            888 88877765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.18  E-value=0.13  Score=28.83  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=10.2

Q ss_pred             CCCCEEEcccCcCCcccchh
Q 035878          452 TSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       452 ~~L~~L~Ls~N~l~~~~p~~  471 (496)
                      ++|++|+|++|++++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45666666666665544443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.21  E-value=0.46  Score=27.09  Aligned_cols=17  Identities=41%  Similarity=0.616  Sum_probs=12.0

Q ss_pred             CCCCCEEEcccCcCCcc
Q 035878          451 LTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       451 l~~L~~L~Ls~N~l~~~  467 (496)
                      +++|++|+|++|+++..
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            35677888888887743

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.21  E-value=0.46  Score=27.09  Aligned_cols=17  Identities=41%  Similarity=0.616  Sum_probs=12.0

Q ss_pred             CCCCCEEEcccCcCCcc
Q 035878          451 LTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       451 l~~L~~L~Ls~N~l~~~  467 (496)
                      +++|++|+|++|+++..
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            35677888888887743

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.07  E-value=0.22  Score=44.34  Aligned_cols=32  Identities=16%  Similarity=0.107  Sum_probs=12.5

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878          310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN  341 (496)
Q Consensus       310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  341 (496)
                      +.+|-++..|..+.-..+.+++.++.|.+.++
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            33444444333333333333444444444433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.80  E-value=0.15  Score=45.29  Aligned_cols=81  Identities=21%  Similarity=0.149  Sum_probs=46.3

Q ss_pred             CccEEEcccCcccccCCcCcCCCCCCCEEEccCCccccc-CCcccC-CCCCCCEEEccCCc-CccccchhhcCCCCCCEE
Q 035878          284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK-IPAEIG-SLSQLVVLDLSSNQ-LSGEIPAQIGNLTELSTL  360 (496)
Q Consensus       284 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L  360 (496)
                      .++.+|-++..+..+.-+.+..++.++.|.+.+|.--+. --+.++ -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            466677777777666556666777777777766643211 001111 23567777777654 554444455666666666


Q ss_pred             eccC
Q 035878          361 SLNG  364 (496)
Q Consensus       361 ~Ls~  364 (496)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		6e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		6e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		7e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 158/385 (41%), Gaps = 37/385 (9%)
Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLAL 171
           LD+S NN +G I P L  + KN        L+   LQ+N  +G+IP  + NC  L  L L
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNT-------LQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 172 DGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV 231
             N+LSG IPSSLG+LS L  L +  N L GEIP  +  +  L  L L            
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL------------ 470
Query: 232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLS 291
                       FN  +G IP+ L +C++L  + L +N LTG++ +  G   NL  + LS
Sbjct: 471 -----------DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQI 351
            N   G +  + G C+ L  L L  N   G IPA +                 G+    I
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYI 575
Query: 352 GNLTELSTLSLNGN--DISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXX 409
            N          GN  +  G   E++                 G           +    
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 410 XXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
                  G IP +IG++  L  +L+L +N ++G IP ++  L  L  ++LS N L G IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 470 XXXXXXXXXXXXXXXYNNLEGPLPD 494
                           NNL GP+P+
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPE 719

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 158/385 (41%), Gaps = 37/385 (9%)
Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLAL 171
           LD+S NN +G I P L  + KN        L+   LQ+N  +G+IP  + NC  L  L L
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNT-------LQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 172 DGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV 231
             N+LSG IPSSLG+LS L  L +  N L GEIP  +  +  L  L L            
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL------------ 473
Query: 232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLS 291
                       FN  +G IP+ L +C++L  + L +N LTG++ +  G   NL  + LS
Sbjct: 474 -----------DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXXXXXXXGEIPAQI 351
            N   G +  + G C+ L  L L  N   G IPA +                 G+    I
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYI 578
Query: 352 GNLTELSTLSLNGN--DISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXX 409
            N          GN  +  G   E++                 G           +    
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 410 XXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
                  G IP +IG++  L  +L+L +N ++G IP ++  L  L  ++LS N L G IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 470 XXXXXXXXXXXXXXXYNNLEGPLPD 494
                           NNL GP+P+
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPE 722

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 24/299 (8%)
Query: 30  ETEALLKWKETLVNQSIVQSWVIPAXXXXXXXXXXXCRWSGIVCNDAGSVTEINLANTGL 89
           + +ALL+ K+ L N + + SW +P              W G++C+       +N  N  L
Sbjct: 7   DKQALLQIKKDLGNPTTLSSW-LPTTDCCNRT------WLGVLCDTDTQTYRVN--NLDL 57
Query: 90  AGTLHDLDF---SSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFL 146
           +G      +   SS  NL   +   +    NN+ G I P          +  L  L    
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPA---------IAKLTQLHYLY 107
Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
           +    +SG IP+ +   K L  L    N LSG +P S+ +L +L  +    N++SG IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 207 NIGTLSKL-TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR 265
           + G+ SKL T + +  N+L+G  P       L     S N   G       S  +  ++ 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP 324
           L  N L  DL +  G+  NL  +DL  NR+ G +     + + L  L ++ N++ G+IP
Sbjct: 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 34/234 (14%)
Query: 240 FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV 299
           +    N+  GPIP ++   + L+ + +    ++G +         L  +D SYN L G +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXX-XXXXXXXXXXXXGEIPAQIGNLTELS 358
            P       L  +   GN I G IP   G                 G+IP    NL  L+
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 359 TLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXXXGPIPKQIGELRDLRXXXXXXXXXXGT 418
            + L+ N + G      G+                   ++I   ++             +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNT---------------QKIHLAKN-------------S 232
Query: 419 IPFQIGNLVGLQ---DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
           + F +G  VGL    + LDL  N + G +P  L +L  L S+N+S NNL GEIP
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 81/217 (37%), Gaps = 8/217 (3%)
Query: 284 NLTYIDLSY----NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGXXXXXXXXXXX 339
           NL Y++  Y    N L G + P   K  +L  L +   ++ G IP  +            
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 340 XXXXXGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAXXXXXXXXXXXXXX-XGPIPKQ 398
                G +P  I +L  L  ++ +GN ISG IP+  G+                G IP  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 399 IGELRDLRXXXXXXXXXXGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMN 458
              L +L           G      G+    Q +  L+ NSL  ++  ++    +L  ++
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI-HLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 459 LSHNNLSGEIPXXXXXXXXXXXXXXXYNNLEGPLPDG 495
           L +N + G +P               +NNL G +P G
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 34/75 (45%)
Query: 419 IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPXXXXXXXXX 478
           IP  + NL  L  L     N+L G IP  + KLT L  + ++H N+SG IP         
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 479 XXXXXXYNNLEGPLP 493
                 YN L G LP
Sbjct: 128 VTLDFSYNALSGTLP 142

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 91  GTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN 150
             L  +D ++F  L R     LD       G   P LF         GL  L+   LQDN
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELG---PGLF--------RGLAALQYLYLQDN 139
Query: 151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
            L     +   +   LT L L GN +S     +   L  L  L +  N+++   P     
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 211 LSKLTDLHLFINKLSGLPPQV--------------------CKGGKLINFTASFNHFSGP 250
           L +L  L+LF N LS LP +                     C+   L  +   F   S  
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259
Query: 251 IPTSL-KSCSSLYRVRLESNELTG 273
           +P SL +  +     RL +N+L G
Sbjct: 260 VPCSLPQRLAGRDLKRLAANDLQG 283

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 91  GTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN 150
             L  +D ++F  L R     LD       G   P LF         GL  L+   LQDN
Sbjct: 90  AQLRSVDPATFHGLGRLHTLHLDRCGLQELG---PGLF--------RGLAALQYLYLQDN 138
Query: 151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
            L     +   +   LT L L GN +S     +   L  L  L +  N+++   P     
Sbjct: 139 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 211 LSKLTDLHLFINKLSGLPPQV--------------------CKGGKLINFTASFNHFSGP 250
           L +L  L+LF N LS LP +                     C+   L  +   F   S  
Sbjct: 199 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 258
Query: 251 IPTSL-KSCSSLYRVRLESNELTG 273
           +P SL +  +     RL +N+L G
Sbjct: 259 VPCSLPQRLAGRDLKRLAANDLQG 282

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           +  E+ +C  L L           +P  L   +++ VL +  NQL     AN    S+LT
Sbjct: 4   VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLT 52
Query: 216 DLHLFINKLSGLPPQVCKGGKLIN-FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
            L +  N +S L P++C+   ++       N  S     +   C++L  + L SN +   
Sbjct: 53  SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Query: 275 LEQDFGIYPNLTYIDLSYNRL 295
               F    NL  +DLS+N L
Sbjct: 113 KNNPFVKQKNLITLDLSHNGL 133

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 67/176 (38%), Gaps = 1/176 (0%)
Query: 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG 202
           K   LQ N LS    +       L LL L+ N L          L +L  L V  N+L  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSL 261
                   L  L +L L  N+L  LPP+V     KL   +  +N             +SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
             +RL +N+L    E  F     L  + L  N+L+      +   +KL +L L  N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           +  E+ +C  L L           +P  L   +++ VL +  NQL     AN    S+LT
Sbjct: 14  VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLT 62
Query: 216 DLHLFINKLSGLPPQVCKGGKLIN-FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
            L +  N +S L P++C+   ++       N  S     +   C++L  + L SN +   
Sbjct: 63  SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Query: 275 LEQDFGIYPNLTYIDLSYNRL 295
               F    NL  +DLS+N L
Sbjct: 123 KNNPFVKQKNLITLDLSHNGL 143

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           I   I     LT L L+GN L+  +P+ + NLS+L VL ++ N+L+  +PA +G+  +L 
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 216 DLHLFINKLSGLP 228
             + F N ++ LP
Sbjct: 297 YFYFFDNMVTTLP 309

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           +  E+ +C  L L           +P  L   +++ VL +  NQL     AN    S+LT
Sbjct: 9   VSHEVADCSHLKL---------TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLT 57
Query: 216 DLHLFINKLSGLPPQVCKGGKLIN-FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
            L +  N +S L P++C+   ++       N  S     +   C++L  + L SN +   
Sbjct: 58  SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Query: 275 LEQDFGIYPNLTYIDLSYNRL 295
               F    NL  +DLS+N L
Sbjct: 118 KNNPFVKQKNLITLDLSHNGL 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-117
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-70
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-39
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  362 bits (931), Expect = e-117
 Identities = 123/421 (29%), Positives = 196/421 (46%), Gaps = 23/421 (5%)

Query: 80  TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGL 139
             + L++   +G L          L       LD+S N  +G +   L            
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGL-----KVLDLSFNEFSGELPESLT--------NLS 367

Query: 140 LGLKNFLLQDNMLSGRIPEEIGNCKL--LTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
             L    L  N  SG I   +       L  L L  N  +G IP +L N S+L  L ++ 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
           N LSG IP+++G+LSKL DL L++N L G +P ++     L      FN  +G IP+ L 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG 316
           +C++L  + L +N LTG++ +  G   NL  + LS N   G +  + G C+ L  L L  
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDI--SGPIPEE 374
           N   G IPA +   S      +++N ++G+    I N          GN +   G   E+
Sbjct: 548 NLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           +  L   +  +++     G           +  L +S N L+G IP +IG++  L  +L+
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF-ILN 662

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
           L +N ++G IP ++  L  L  ++LS N L G IP ++S++  L  ++LS NNL GP+P+
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

Query: 495 G 495
            
Sbjct: 723 M 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  317 bits (815), Expect = e-100
 Identities = 142/432 (32%), Positives = 206/432 (47%), Gaps = 31/432 (7%)

Query: 68  WSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRL 127
              ++ +  G +  + ++   ++G +   D S   NL       LDVS NN + GI P L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNL-----EFLDVSSNNFSTGI-PFL 219

Query: 128 FPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNL 187
                         L++  +  N LSG     I  C  L LL +  N   GPIP     L
Sbjct: 220 G---------DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268

Query: 188 SDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFN 245
             L  L++A N+ +GEIP  + G    LT L L  N   G +PP       L +   S N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 246 HFSGPIPT-SLKSCSSLYRVRLESNELTGDLEQDFG-IYPNLTYIDLSYNRLQGEVSPKW 303
           +FSG +P  +L     L  + L  NE +G+L +    +  +L  +DLS N   G + P  
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

Query: 304 GKCQK--LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS 361
            +  K  L  L L  N   GKIP  + + S+LV L LS N LSG IP+ +G+L++L  L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF 421
           L  N + G IP+E+  +  L++L L  N L+G IP  +    +L  +SLS N L G IP 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

Query: 422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAV 481
            IG L  L  +L LS NS +G IPA+L    SL  ++L+ N  +G IPA++         
Sbjct: 509 WIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK--- 564

Query: 482 NLSYNNLEGPLP 493
            ++ N + G   
Sbjct: 565 -IAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  311 bits (798), Expect = 6e-98
 Identities = 125/425 (29%), Positives = 194/425 (45%), Gaps = 30/425 (7%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  ++++   L+G       S+   L       L++S N   G I           P  
Sbjct: 224 ALQHLDISGNKLSGDFSR-AISTCTELK-----LLNISSNQFVGPI-----------PPL 266

Query: 138 GLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
            L  L+   L +N  +G IP+ + G C  LT L L GN   G +P   G+ S L  LA++
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 197 SNQLSGEIPAN-IGTLSKLTDLHLFINKLSG-LPPQVCKG-GKLINFTASFNHFSGPIPT 253
           SN  SGE+P + +  +  L  L L  N+ SG LP  +      L+    S N+FSGPI  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 254 SLKSC--SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311
           +L     ++L  + L++N  TG +         L  + LS+N L G +    G   KL  
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPI 371
           L L  N + G+IP E+  +  L  L L  N L+GEIP+ + N T L+ +SL+ N ++G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD 431
           P+ IG L NL  L LS N  SG IP ++G+ R L  L L+ N  NGTIP  +        
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----- 561

Query: 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN--NLSGEIPASLSSMLSLVAVNLSYNNLE 489
              ++ N + G+    ++     +  + + N     G     L+ + +    N++     
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 490 GPLPD 494
           G    
Sbjct: 622 GHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  294 bits (756), Expect = 1e-91
 Identities = 129/483 (26%), Positives = 198/483 (40%), Gaps = 91/483 (18%)

Query: 25  ASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINL 84
            S   E   L+ +K+ L +++++  W         S+  +PC + G+ C D   VT I+L
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPDW---------SSNKNPCTFDGVTCRD-DKVTSIDL 57

Query: 85  ANTGLAGTLHDL--DFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGL 142
           ++  L      +     S   L       L +S +++ G +                  L
Sbjct: 58  SSKPLNVGFSAVSSSLLSLTGLES-----LFLSNSHINGSVS----------GFKCSASL 102

Query: 143 KNFLLQDNMLSGRIPE--EIGNCKLLTLLALDGNFLSGPIPSSLG-NLSDLAVLAVASNQ 199
            +  L  N LSG +     +G+C  L  L +  N L  P   S G  L+ L VL +++N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 200 LSGEIPANI---GTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
           +SG             +L  L +                       S N  SG +     
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAI-----------------------SGNKISGDVD---- 195

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG 316
                                      NL ++D+S N     + P  G C  L  L ++G
Sbjct: 196 ----------------------VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISG 232

Query: 317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI- 375
           N + G     I + ++L +L++SSNQ  G IP     L  L  LSL  N  +G IP+ + 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290

Query: 376 GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ-IGNLVGLQDLLD 434
           GA   L  LDLS N   G +P   G    L SL+LS NN +G +P   +  + GL+  LD
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV-LD 349

Query: 435 LSYNSLTGEIPAQLEKLT-SLQSMNLSHNNLSGEIPASL--SSMLSLVAVNLSYNNLEGP 491
           LS+N  +GE+P  L  L+ SL +++LS NN SG I  +L  +   +L  + L  N   G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 492 LPD 494
           +P 
Sbjct: 410 IPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  276 bits (708), Expect = 9e-85
 Identities = 108/372 (29%), Positives = 165/372 (44%), Gaps = 21/372 (5%)

Query: 77  GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
            S+  ++L++   +G +      +     +  + EL +  N  TG I P L         
Sbjct: 368 ASLLTLDLSSNNFSGPI----LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-------- 415

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
                L +  L  N LSG IP  +G+   L  L L  N L G IP  L  +  L  L + 
Sbjct: 416 -NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSL 255
            N L+GEIP+ +   + L  + L  N+L+G +P  + +   L     S N FSG IP  L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 256 KSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA 315
             C SL  + L +N   G +          +   ++ N + G+                A
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMF---KQS-GKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 316 GN--SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
           GN     G    ++  LS     +++S    G       N   +  L ++ N +SG IP+
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
           EIG++  L  L+L  N +SG IP ++G+LR L  L LS N L+G IP  +  L  L + +
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE-I 709

Query: 434 DLSYNSLTGEIP 445
           DLS N+L+G IP
Sbjct: 710 DLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  208 bits (532), Expect = 1e-59
 Identities = 85/281 (30%), Positives = 124/281 (44%), Gaps = 17/281 (6%)

Query: 112 LDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLAL 171
           L +  N++TG I   L              L    L +N L+G IP+ IG  + L +L L
Sbjct: 471 LILDFNDLTGEIPSGLS---------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 172 DGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ- 230
             N  SG IP+ LG+   L  L + +N  +G IPA +   S      +  N ++G     
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVY 577

Query: 231 --VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYI 288
                  K  +   +   F G     L   S+     + S    G     F    ++ ++
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 289 DLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIP 348
           D+SYN L G +  + G    L +L L  N I G IP E+G L  L +LDLSSN+L G IP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 349 AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389
             +  LT L+ + L+ N++SGPIP E+G            N
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 3e-50
 Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 284 NLTYIDLSYNRLQ---GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS 340
            +T IDLS   L      VS        L  L L+ + I G +       + L  LDLS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 341 NQLSGEIPA--QIGNLTELSTLSLNGNDISGPIPEEIGALL-NLDSLDLSMNRLSGPIPK 397
           N LSG +     +G+ + L  L+++ N +  P     G  L +L+ LDLS N +SG    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 398 QI---GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL 454
                    +L+ L++S N ++G +   +   V L+ L D+S N+ +  IP  L   ++L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL-DVSSNNFSTGIPF-LGDCSAL 225

Query: 455 QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 496
           Q +++S N LSG+   ++S+   L  +N+S N   GP+P   
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (304), Expect = 4e-29
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 352 GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS 411
             +T +   S   N     +   + +L  L+SL LS + ++G +         L SL LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 412 QNNLNGTIP--FQIGNLVGLQDLLDLSYNSLTGEIPAQLE-KLTSLQSMNLSHNNLSGEI 468
           +N+L+G +     +G+  GL+  L++S N+L          KL SL+ ++LS N++SG  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLK-FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 469 PASL---SSMLSLVAVNLSYNNLEGPLPDGS 496
                       L  + +S N + G +    
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSR 198

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  246 bits (631), Expect = 2e-78
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 7/257 (2%)

Query: 243 SFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE--QDFGIYPNLTYIDLS-YNRLQGEV 299
               + G +  +      +  + L    L             P L ++ +   N L G +
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELST 359
            P   K  +L  L +   ++ G IP  +  +  LV LD S N LSG +P  I +L  L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 360 LSLNGNDISGPIPEEIGALLNLD-SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418
           ++ +GN ISG IP+  G+   L  S+ +S NRL+G IP     L +L  + LS+N L G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Query: 419 IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSL 478
                G+    Q +  L+ NSL  ++  ++    +L  ++L +N + G +P  L+ +  L
Sbjct: 213 ASVLFGSDKNTQKI-HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 479 VAVNLSYNNLEGPLPDG 495
            ++N+S+NNL G +P G
Sbjct: 271 HSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  236 bits (605), Expect = 2e-74
 Identities = 96/421 (22%), Positives = 145/421 (34%), Gaps = 122/421 (28%)

Query: 29  TETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAG---SVTEINLA 85
            + +ALL+ K+ L N + + SW         +T      W G++C+       V  ++L+
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSW-------LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 86  NTGLAGTLH-DLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKN 144
              L          ++ P L                                        
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLY------------------------------------ 82

Query: 145 FLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEI 204
            +   N L G IP  I     L  L +    +SG IP  L  +  L  L  + N LSG +
Sbjct: 83  -IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 205 PANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRV 264
           P +I +L  L  +                           N  SG IP S  S S L   
Sbjct: 142 PPSISSLPNLVGITF-----------------------DGNRISGAIPDSYGSFSKL--- 175

Query: 265 RLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP 324
                                T + +S NRL G+                        IP
Sbjct: 176 --------------------FTSMTISRNRLTGK------------------------IP 191

Query: 325 AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSL 384
               +L+ L  +DLS N L G+     G+      + L  N ++  +  ++G   NL+ L
Sbjct: 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249

Query: 385 DLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI 444
           DL  NR+ G +P+ + +L+ L SL++S NNL G IP Q GNL    D+   + N      
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF-DVSAYANNKCLCGS 307

Query: 445 P 445
           P
Sbjct: 308 P 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  214 bits (548), Expect = 4e-66
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 4/209 (1%)

Query: 288 IDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG--KIPAEIGSLSQLVVLDLSS-NQLS 344
            D       G +     +  ++  L L+G ++     IP+ + +L  L  L +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 345 GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRD 404
           G IP  I  LT+L  L +   ++SG IP+ +  +  L +LD S N LSG +P  I  L +
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 405 LRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
           L  ++   N ++G IP   G+   L   + +S N LTG+IP     L +L  ++LS N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209

Query: 465 SGEIPASLSSMLSLVAVNLSYNNLEGPLP 493
            G+      S  +   ++L+ N+L   L 
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (332), Expect = 9e-35
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 346 EIPAQIGNLTELS----TLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG--PIPKQI 399
           +I   +GN T LS    T         G + +       +++LDLS   L    PIP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 400 GELRDLRSLSLS-QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMN 458
             L  L  L +   NNL G IP  I  L  L   L +++ +++G IP  L ++ +L +++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-YLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 459 LSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
            S+N LSG +P S+SS+ +LV +    N + G +PD
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (598), Expect = 6e-70
 Identities = 91/562 (16%), Positives = 176/562 (31%), Gaps = 101/562 (17%)

Query: 24  KASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWS---GIVCNDAGSVT 80
            A  + +  AL +  + L  ++  Q        ++ +       W    G+  N  G VT
Sbjct: 25  TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVT 84

Query: 81  EINLANTGLAGTLHDLDFSSFPNLLRFDVY-----------------------ELDVSRN 117
            ++L   G +G + D        L    +                        +    R 
Sbjct: 85  GLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 118 NMTGGIDPRLFP---------DDKNQPMTG--------LLGLKNFLLQDNMLSGRIPEEI 160
           +                       + P            L         N ++  + + +
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV 202

Query: 161 GNCKLLTLLALDGNFLSGP-------------------IPSSLGNLSDLAVLAVASNQLS 201
                L    +  +                              NL DL  + V +    
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA---------SFNHF-SGPI 251
            ++P  +  L ++  +++  N+             L +             +N+  + P+
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 252 PTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311
            TSL+    L  +    N+L G L   FG    L  ++L+YN++    +   G  +++  
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 312 LGLAGNSIGGKIPA--EIGSLSQLVVLDLSSNQLSG-------EIPAQIGNLTELSTLSL 362
           L  A N +   IP   +  S+S +  +D S N++          +         +S+++L
Sbjct: 382 LSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSG-------PIPKQIGELRDLRSLSLSQNNL 415
           + N IS    E       L S++L  N L+           +       L S+ L  N L
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 416 NGTIP-FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH------NNLSGEI 468
                 F+   L  L   +DLSYNS +   P Q    ++L+   + +      N    E 
Sbjct: 501 TKLSDDFRATTLPYLV-GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 469 PASLSSMLSLVAVNLSYNNLEG 490
           P  ++   SL  + +  N++  
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (574), Expect = 1e-66
 Identities = 59/422 (13%), Positives = 134/422 (31%), Gaps = 50/422 (11%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQ----------PMTGLLGLKNFLLQDNMLSGRIPEEI 160
           +  +  +          + ++ ++              L  L +  + +     ++P  +
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 161 GNCKLLTLLALDGNFL--------SGPIPSSLGNLSDLAVLAVASNQL-SGEIPANIGTL 211
                + L+ +  N               +       + ++ +  N L +  +  ++  +
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 212 SKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNEL 271
            KL  L    N+L G  P      KL +   ++N  +            +  +    N+L
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 272 TGDLEQDFGIY--PNLTYIDLSYNRLQG-------EVSPKWGKCQKLTLLGLAGNSIGGK 322
              +   F       ++ ID SYN +          + P   K   ++ + L+ N I   
Sbjct: 390 KY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 323 IPAEIGSLSQLVVLDLSSNQLSG-------EIPAQIGNLTELSTLSLNGNDISGPIPEEI 375
                 + S L  ++L  N L+        +      N   L+++ L  N ++  + ++ 
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507

Query: 376 GA--LLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQ------NNLNGTIPFQIGNLV 427
            A  L  L  +DLS N  S   P Q      L+   +        N      P  I    
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
            L  L  +  N +   +  ++    ++  +++  N       + +   +      L Y+ 
Sbjct: 567 SLTQL-QIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 488 LE 489
            +
Sbjct: 623 TQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (307), Expect = 1e-29
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 27/204 (13%)

Query: 317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP----IP 372
           +  G +    + S  ++  L L     SG +P  IG LTEL  L+L  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELR--DLRSLSLSQNNLNGTIPFQIGNLVGLQ 430
           + I A ++ +                       DL    ++ +    +I       +   
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE-------------------IPAS 471
             +    N++T  +   + +LT L+   + ++    E                       
Sbjct: 187 Q-IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 472 LSSMLSLVAVNLSYNNLEGPLPDG 495
             ++  L  V +        LP  
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            +T I+L    L     D   ++ P L       +D+S N+ +     +      +  + 
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYL-----VGIDLSYNSFSK-FPTQPL---NSSTLK 539

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
           G         Q N      PE I  C  LT L +  N +   +   +    +++VL +  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKD 596

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLP 228
           N       + +    +     LF +K   + 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (556), Expect = 1e-63
 Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           S+ ++ L++  +        F +   L     + L ++   +   +  +L  +       
Sbjct: 172 SLKKLELSSNQIKE-FSPGCFHAIGRL-----FGLFLNNVQLGPSLTEKLCLEL------ 219

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKL--LTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
               ++N  L ++ LS          K   LT+L L  N L+     S   L  L    +
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 196 ASNQLSGEIPANIGTLSKLTDLHL---------FINKLSGLPPQVCKG-GKLINFTASFN 245
             N +      ++  L  +  L+L          +  L  +     +    L +     N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 246 HFSGPIPTSLKSCSSLYRVRLESN--ELTGDLEQDFG--IYPNLTYIDLSYNRLQGEVSP 301
              G          +L  + L ++   L     + F    +  L  ++L+ N++    S 
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 302 KWGKCQKLTLLGLAGNSIGGKIPA-EIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360
            +     L +L L  N IG ++   E   L  +  + LS N+           +  L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 361 SLNGNDISG--PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN-- 416
            L    +      P     L NL  LDLS N ++      +  L  L  L L  NNL   
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 417 ------GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA 470
                 G   + +  L  L  +L+L  N          + L  L+ ++L  NNL+    +
Sbjct: 520 WKHANPGGPIYFLKGLSHLH-ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 471 SLSSMLSLVAVNLSYNNLEGPLPD 494
             ++ +SL ++NL  N +      
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (551), Expect = 6e-63
 Identities = 82/443 (18%), Positives = 153/443 (34%), Gaps = 39/443 (8%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNL-LRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
            +  + L N  L  +L +       N  +R     L +S + ++       F        
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIR----NLSLSNSQLST-TSNTTFLG------ 244

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
                L    L  N L+    +       L    L+ N +      SL  L ++  L + 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 197 SN---------QLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNH 246
            +          L      +   L  L  L++  N + G+   +  G   L   + S + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 247 FSGPIPTSLK----SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK 302
            S    T+      + S L+ + L  N+++      F    +L  +DL  N +  E++ +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 303 -WGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG--EIPAQIGNLTELST 359
            W   + +  + L+ N            +  L  L L    L      P+    L  L+ 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 360 LSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS--------GPIPKQIGELRDLRSLSLS 411
           L L+ N+I+    + +  L  L+ LDL  N L+        G     +  L  L  L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471
            N  +        +L  L+ ++DL  N+L     +      SL+S+NL  N ++      
Sbjct: 545 SNGFDEIPVEVFKDLFELK-IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 472 LSSML-SLVAVNLSYNNLEGPLP 493
                 +L  +++ +N  +    
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  207 bits (529), Expect = 8e-60
 Identities = 87/425 (20%), Positives = 145/425 (34%), Gaps = 31/425 (7%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
              L  +  P+ L  ++  L+++ N +   +    F        T    L +  +  N +
Sbjct: 11  CSHLKLTQVPDDLPTNITVLNLTHNQLRR-LPAANF--------TRYSQLTSLDVGFNTI 61

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
           S   PE      +L +L L  N LS     +    ++L  L + SN +            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 213 KLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSC--SSLYRVRLESN 269
            L  L L  N LS            L     S N         L     SSL ++ L SN
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ---KLTLLGLAGNSIGGKIPAE 326
           ++       F     L  + L+  +L   ++ K         +  L L+ + +       
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 327 IGSL--SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSL 384
              L  + L +LDLS N L+         L +L    L  N+I       +  L N+  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 385 DL---------SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435
           +L         S+  L          L+ L  L++  N++ G        L+ L+  L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSL 360

Query: 436 SYN--SLTGEIPAQLEKL--TSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 491
           S +  SL          L  + L  +NL+ N +S     + S +  L  ++L  N +   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 492 LPDGS 496
           L    
Sbjct: 421 LTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (445), Expect = 5e-48
 Identities = 78/337 (23%), Positives = 128/337 (37%), Gaps = 32/337 (9%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
             +       L+  +P  L   +++ VL +  NQL     AN    S+LT L +      
Sbjct: 6   HEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV------ 56

Query: 226 GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
                             FN  S   P   +    L  + L+ NEL+   ++ F    NL
Sbjct: 57  -----------------GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG 345
           T + L  N +Q   +  + K + L  L L+ N +          L  L  L LS+N++  
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 346 EIPA--QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE-- 401
                  I   + L  L L+ N I    P    A+  L  L L+  +L   + +++    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 402 -LRDLRSLSLSQNNLNGTIPFQIGNLVGLQ-DLLDLSYNSLTGEIPAQLEKLTSLQSMNL 459
               +R+LSLS + L+ T       L      +LDLSYN+L          L  L+   L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 460 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 496
            +NN+      SL  + ++  +NL  +  +  +   S
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (444), Expect = 6e-48
 Identities = 78/427 (18%), Positives = 143/427 (33%), Gaps = 27/427 (6%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++T ++L+   L   + +  F+  P L         +  NN+       L      + + 
Sbjct: 249 NLTMLDLSYNNLNV-VGNDSFAWLPQLE-----YFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
                    +    L           K L  L ++ N + G   +    L +L  L++++
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 198 NQLSGEIPANIG----TLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIP 252
           +  S     N        S L  L+L  NK+S +        G L       N     + 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 253 -TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG-EVSPKW-GKCQKL 309
               +   +++ + L  N+        F + P+L  + L    L+  + SP      + L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS--------GEIPAQIGNLTELSTLS 361
           T+L L+ N+I       +  L +L +LDL  N L+        G     +  L+ L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF 421
           L  N       E    L  L  +DL +N L+            L+SL+L +N +      
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI----PASLSSMLS 477
             G        LD+ +N       +    +  +   + +   LS       P        
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-P 661

Query: 478 LVAVNLS 484
           +   + S
Sbjct: 662 VRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (376), Expect = 1e-38
 Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 6/214 (2%)

Query: 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343
           +    D S+ +L  +V         +T+L L  N +     A     SQL  LD+  N +
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 344 SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELR 403
           S   P     L  L  L+L  N++S    +      NL  L L  N +         + +
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE--KLTSLQSMNLSH 461
           +L +L LS N L+ T       L  LQ+ L LS N +      +L+    +SL+ + LS 
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQE-LLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 462 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495
           N +    P    ++  L  + L+   L   L + 
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 2e-20
 Identities = 51/346 (14%), Positives = 88/346 (25%), Gaps = 104/346 (30%)

Query: 77  GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
           G +  ++L    +   L   ++    N+     +E+ +S N                   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENI-----FEIYLSYNK------------------ 441

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSG--PIPSSLGNLSDLAVLA 194
                                        L  L L    L      PS    L +L +L 
Sbjct: 442 ---------------YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           +++N ++      +  L KL  L L  N L+ L                 +   G     
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK---------------HANPGGPIYF 531

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           LK  S                        +L  ++L  N                     
Sbjct: 532 LKGLS------------------------HLHILNLESNGFDEI---------------- 551

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
                          L +L ++DL  N L+    +   N   L +L+L  N I+    + 
Sbjct: 552 --------PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 375 IGALL-NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI 419
            G    NL  LD+  N            +  +     +   L+   
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  218 bits (557), Expect = 9e-63
 Identities = 86/502 (17%), Positives = 171/502 (34%), Gaps = 47/502 (9%)

Query: 23  CKASSLTETEALLKWKETL--VNQSIVQSWVIPASNSSN-STTPSPCRWS---GIVCNDA 76
             A  + + +AL    E L   N       +    +S N +       W    G+  ++ 
Sbjct: 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN 322

Query: 77  GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
           G VT ++LA  G  G + D        L       L    ++ T     RLF D++  P 
Sbjct: 323 GRVTGLSLAGFGAKGRVPD-AIGQLTEL-----KVLSFGTHSETVS--GRLFGDEELTPD 374

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
                     +    +     + +    LL         +      S  +L D  +  + 
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL- 433

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
           +N+++  I   I  L+KL  ++   +  +     V       +  + +         S  
Sbjct: 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVD----WEDANSDYAKQYENEELSWS 488

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG---------EVSPKWGKCQ 307
           +   L  V L +      L       P L  ++++ NR             ++       
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 308 KLTLLGLAGNSIGG-KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND 366
           K+ +  +  N++      A +  + +L +LD   N++   + A  G   +L+ L L+ N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQ 606

Query: 367 ISGPIPEEIGALL-NLDSLDLSMNRLSG-PIPKQIGELRDLRSLSLSQNNLNGTIPFQIG 424
           I   IPE+  A    ++ L  S N+L   P       +  + S+  S N +         
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 425 NLVGLQDL----LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS-------GEIPASLS 473
           ++   + +    + LSYN +           + + ++ LS+N ++            +  
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 474 SMLSLVAVNLSYNNLEGPLPDG 495
           +   L  ++L +N L   L D 
Sbjct: 726 NTYLLTTIDLRFNKLTS-LSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (531), Expect = 4e-59
 Identities = 62/416 (14%), Positives = 129/416 (31%), Gaps = 53/416 (12%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
            +  + +  T                   +  ++                 N K LT + 
Sbjct: 452 IIYFANSPFTYDNIA--------------VDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 171 LDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG---------EIPANIGTLSKLTDLHLFI 221
           L        +P  L +L +L  L +A N+             +  +  T  K+   ++  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 222 NKLSGLPPQVCKGG--KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDF 279
           N L   P         KL       N        +  +   L  ++L+ N++    E   
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 280 GIYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGS------LSQ 332
                +  +  S+N+L+             +  +  + N IG      I           
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGIN 674

Query: 333 LVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS-------GPIPEEIGALLNLDSLD 385
              + LS N++           + +ST+ L+ N ++        P          L ++D
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 386 LSMNRLSG-PIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-----LDLSYNS 439
           L  N+L+      +   L  L ++ +S N  + + P Q  N   L+        D   N 
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 440 LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL-EGPLPD 494
           +  + P  +    SL  + +  N++  ++   L+    L  ++++ N      +  
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTP--QLYILDIADNPNISIDVTS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 9e-29
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 13/219 (5%)

Query: 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343
            +T + L+    +G V    G+  +L +L    +S                + +   +++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 344 SGEIP------AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397
                       Q  NL++L   ++N N    PI ++    L    +    NR++  I K
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK 442

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM 457
            I  L  L+ +  + +                    +  Y             L  L  +
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWED------ANSDYAKQYENEELSWSNLKDLTDV 496

Query: 458 NLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 496
            L +     ++P  L  +  L ++N++ N         +
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  194 bits (496), Expect = 1e-55
 Identities = 85/428 (19%), Positives = 144/428 (33%), Gaps = 35/428 (8%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  ++L++  +   ++  D      +       LD+S N M   I P  F         
Sbjct: 150 NLEHLDLSSNKIQS-IYCTDLRVLHQM-PLLNLSLDLSLNPMNF-IQPGAF--------- 197

Query: 138 GLLGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLALDGNFLSG------PIPSSLGNLSDL 190
             + L    L++N  S  + +  I     L +  L                S+L  L +L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 191 AVLAVASNQLS---GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF 247
            +       L     +I      L+ ++   L    +  +           +       F
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ--GEVSPKWGK 305
                  LKS   L     +               P+L ++DLS N L   G  S     
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNG 364
              L  L L+ N +   + +    L QL  LD   + L       +  +L  L  L ++ 
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQI 423
                        L +L+ L ++ N         I  ELR+L  L LSQ  L    P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 424 GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-SLVAVN 482
            +L  LQ +L++S+N+         + L SLQ ++ S N++       L     SL  +N
Sbjct: 491 NSLSSLQ-VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 483 LSYNNLEG 490
           L+ N+   
Sbjct: 550 LTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (465), Expect = 3e-51
 Identities = 55/411 (13%), Positives = 128/411 (31%), Gaps = 15/411 (3%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            + ++ L N   +  +          L         +         +   F     + + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGL-----EVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
            L   +  L   +     I +       ++  +L    +      S         L + +
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVN 313

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
            +        + +L +LT                    + ++ + +   F G    S   
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGLAG 316
            +SL  + L  N +   +  +F     L ++D  ++ L+       +   + L  L ++ 
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI 375
                        LS L VL ++ N         I   L  L+ L L+   +    P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 376 GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435
            +L +L  L++S N            L  L+ L  S N++  +   ++ +       L+L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 436 SYNSLTGEIPAQ--LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484
           + N        Q  L+ +   + + +    +    P+     + ++++N++
Sbjct: 551 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (455), Expect = 7e-50
 Identities = 78/421 (18%), Positives = 134/421 (31%), Gaps = 37/421 (8%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
             +L+F   P+ L F    LD+S N +   +    F             L+   L    +
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSF--------FSFPELQVLDLSRCEI 64

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
                    +   L+ L L GN +      +   LS L  L      L+      IG L 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 213 KLTDLHLFINKLSGL--PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL----YRVRL 266
            L +L++  N +     P        L +   S N       T L+    +      + L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 267 ESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKI-- 323
             N +       F     L  + L  N     V          L +  L       +   
Sbjct: 185 SLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 324 -PAEIGSLSQLVVLDLSSNQLS------GEIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376
              +  +L  L  L +   +L+       +I      LT +S+ SL    I         
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FS 301

Query: 377 ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
                  L+L   +          +L+ L+ L+ + N           +L  L+  LDLS
Sbjct: 302 YNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLE-FLDLS 355

Query: 437 YNSLT--GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
            N L+  G         TSL+ ++LS N +   + ++   +  L  ++  ++NL+     
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 495 G 495
            
Sbjct: 415 S 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (342), Expect = 2e-34
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS 368
              L L+ N +         S  +L VLDLS  ++         +L+ LSTL L GN I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT-IPFQIGNLV 427
                    L +L  L      L+      IG L+ L+ L+++ N +    +P    NL 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQ----SMNLSHNNLSGEIPASLSSMLSLVAVNL 483
            L+  LDLS N +       L  L  +     S++LS N ++   P +    + L  + L
Sbjct: 150 NLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTL 207

Query: 484 SYNNLEGPLPDGS 496
             N     +    
Sbjct: 208 RNNFDSLNVMKTC 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (471), Expect = 5e-52
 Identities = 95/443 (21%), Positives = 157/443 (35%), Gaps = 35/443 (7%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPD------- 130
           S   +  +   L  T+ +  FS   NL       LD++R  +   I    F         
Sbjct: 34  STECLEFSFNVLP-TIQNTTFSRLINLT-----FLDLTRCQIYW-IHEDTFQSQHRLDTL 86

Query: 131 --DKNQ-------PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIP 181
               N         ++G   LK+       +S      + N K L  L L  N +S    
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 182 SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT--DLHLFINKLSGLPPQVCKGGKLIN 239
                   L VL   +N +      ++ +L + T   L+L  N ++G+ P         +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 240 FTASFNHFSGPIPTSLKSCS--SLYRVRLESNELTGDLEQDFGIYP--NLTYIDLSYNRL 295
                      I   LK+ +  SL+    E  +        F      ++  I+L  +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLT 355
               S  +     L  L L    +  ++P+ +  LS L  L LS+N+          N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 356 ELSTLSLNGNDISGPIPEE-IGALLNLDSLDLSMNRL--SGPIPKQIGELRDLRSLSLSQ 412
            L+ LS+ GN     +    +  L NL  LDLS + +  S     Q+  L  L+SL+LS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 413 NNLNGTIPFQIGNLVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471
           N               L+ LLDL++  L   +  +  + L  L+ +NLSH+ L       
Sbjct: 386 NEPLSLKTEAFKECPQLE-LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 472 LSSMLSLVAVNLSYNNLEGPLPD 494
              + +L  +NL  N+       
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (470), Expect = 6e-52
 Identities = 87/427 (20%), Positives = 161/427 (37%), Gaps = 32/427 (7%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  +    TG++  +  +   +   L       L +  N+++  I              
Sbjct: 106 ALKHLFFIQTGISS-IDFIPLHNQKTLE-----SLYLGSNHISS-IKLPKG--------F 150

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALD--GNFLSGPIPSSLGNLSDLAVLAV 195
               LK    Q+N +     E++ + +  T L+L+  GN ++G I     + +    L  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNF 209

Query: 196 ASNQLSGEIPANIG--TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA---SFNHFSGP 250
              Q    I   +   T+  L            + P V +G   ++  +     ++F   
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLT 310
              +    S L  + L +  L+ +L         L  + LS N+ +            LT
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 311 LLGLAGNSIGGKIPAE-IGSLSQLVVLDLSSNQL--SGEIPAQIGNLTELSTLSLNGNDI 367
            L + GN+   ++    + +L  L  LDLS + +  S     Q+ NL+ L +L+L+ N+ 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 368 SGPIPEEIGALLNLDSLDLSMNRLSGPIPK-QIGELRDLRSLSLSQNNLNGTIPFQIGNL 426
                E       L+ LDL+  RL     +     L  L+ L+LS + L+ +       L
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 427 VGLQDLLDLSYNSLTGEI---PAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNL 483
             LQ  L+L  N            L+ L  L+ + LS  +LS     + +S+  +  V+L
Sbjct: 449 PALQ-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 484 SYNNLEG 490
           S+N L  
Sbjct: 508 SHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 1e-50
 Identities = 85/424 (20%), Positives = 153/424 (36%), Gaps = 27/424 (6%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            +  ++  N  +   L   D SS           L+++ N++ G I+P  F         
Sbjct: 154 KLKVLDFQNNAIH-YLSKEDMSSLQQA---TNLSLNLNGNDIAG-IEPGAFD-------- 200

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKL--LTLLALDGNFLSGPIPSSLGNLSDLAV--L 193
                ++           I + + N  +  L L   +        P+    L +++V  +
Sbjct: 201 -SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 194 AVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT 253
            +  +             S L +L L    LS LP  +     L     S N F      
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 254 SLKSCSSLYRVRLESNELTGDL-EQDFGIYPNLTYIDLSYNRLQ--GEVSPKWGKCQKLT 310
           S  +  SL  + ++ N    +L         NL  +DLS++ ++     + +      L 
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 311 LLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG-EIPAQIGNLTELSTLSLNGNDISG 369
            L L+ N              QL +LDL+  +L   +  +   NL  L  L+L+ + +  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 370 PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRS---LSLSQNNLNGTIPFQIGNL 426
              +    L  L  L+L  N       ++   L+ L     L LS  +L+        +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 427 VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
             +   +DLS+N LT      L  L  +  +NL+ N++S  +P+ L  +     +NL  N
Sbjct: 500 KMMN-HVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 487 NLEG 490
            L+ 
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 5e-44
 Identities = 77/381 (20%), Positives = 133/381 (34%), Gaps = 24/381 (6%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
             D+  + F  L    V  +++ ++     I    F            GL+   L    L
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTF--------HCFSGLQELDLTATHL 290

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPAN-IGTL 211
           S  +P  +     L  L L  N        S  N   L  L++  N    E+    +  L
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 212 SKLTDLHLFINKLSGLPPQVCKGGKLINFTA---SFNHFSGPIPTSLKSCSSLYRVRLES 268
             L +L L  + +        +   L +  +   S+N        + K C  L  + L  
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 269 NELTG-DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI 327
             L   D +  F     L  ++LS++ L       +     L  L L GN        + 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 328 GS---LSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSL 384
            S   L +L +L LS   LS        +L  ++ + L+ N ++    E +  L  +  L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528

Query: 385 DLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI 444
           +L+ N +S  +P  +  L   R+++L QN L+ T      + +   +    +   L    
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-----SNIYFLEWYKENMQKLEDTE 583

Query: 445 PAQLEKLTSLQSMNLSHNNLS 465
               E    L+ + LS   LS
Sbjct: 584 DTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (326), Expect = 3e-32
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 4/218 (1%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339
            +  +   ++ S+N L    +  + +   LT L L    I         S  +L  L L+
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI 399
           +N L       +     L  L      IS      +     L+SL L  N +S     + 
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 400 GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-LDLSYNSLTGEIPAQLEKLTSLQSMN 458
                L+ L    N ++      + +L    +L L+L+ N +   I          QS+N
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLN 208

Query: 459 LSHNNLSGEIPASLS--SMLSLVAVNLSYNNLEGPLPD 494
                    I   L   ++ SL        + E   P 
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 21/227 (9%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            +  +NL+      +L    F   P L       LD++   +        F         
Sbjct: 377 HLQSLNLSYNEP-LSLKTEAFKECPQLE-----LLDLAFTRLKVKDAQSPF--------Q 422

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPI---PSSLGNLSDLAVLA 194
            L  LK   L  ++L     +       L  L L GN          +SL  L  L +L 
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           ++   LS        +L  +  + L  N+L+    +     K I    + NH S  +P+ 
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP 301
           L   S    + L  N L             L +   +  +L+     
Sbjct: 543 LPILSQQRTINLRQNPLDCTCS----NIYFLEWYKENMQKLEDTEDT 585

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (425), Expect = 1e-45
 Identities = 80/424 (18%), Positives = 143/424 (33%), Gaps = 33/424 (7%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  ++L+   +   +   D              LD+S N +   I  + F         
Sbjct: 154 NLVHVDLSYNYIQT-ITVNDLQFLREN-PQVNLSLDMSLNPIDF-IQDQAF--------- 201

Query: 138 GLLGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLALDGNFLSG------PIPSSLGNLSDL 190
             + L    L+ N  S  I +  + N   L +  L               PS +  L D+
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 191 AV--LAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFS 248
            +    +       +       L+ ++ + L    +  L   V K  K  + +       
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLK 320

Query: 249 GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ--GEVSPKWGKC 306
                 L     L  + L  N+ +          P+L+Y+DLS N L   G  S      
Sbjct: 321 QFPTLDL---PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ-IGNLTELSTLSLNGN 365
             L  L L+ N     + A    L +L  LD   + L          +L +L  L ++  
Sbjct: 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 366 DISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIG 424
           +           L +L++L ++ N         +     +L  L LS+  L         
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 425 NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484
            L  LQ LL++S+N+L     +   +L SL +++ S N +            SL   NL+
Sbjct: 495 TLHRLQ-LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 485 YNNL 488
            N++
Sbjct: 554 NNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  154 bits (390), Expect = 7e-41
 Identities = 77/449 (17%), Positives = 132/449 (29%), Gaps = 58/449 (12%)

Query: 80  TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGL 139
           + + L    +        FS   +L       L      +   ++              L
Sbjct: 83  SNLILTGNPIQS-FSPGSFSGLTSLE-----NLVAVETKLAS-LESFPI--------GQL 127

Query: 140 LGLKNFLLQDNMLSG-RIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV--- 195
           + LK   +  N +   ++P    N   L  + L  N++     + L  L +   + +   
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 196 -ASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGG--------KLINFTASFNH 246
            + N +   I        KL +L L  N  S    + C            ++       +
Sbjct: 188 MSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 247 FSGPIPTSLKSCSSLYR--VRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWG 304
                P+ ++    +     RL       D    F    N++ + L+   ++        
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVP 304

Query: 305 KCQKLTLLGLAGNSIG-------------------GKIPAEIGSLSQLVVLDLSSNQLS- 344
           K  K   L +    +                    G I  +  +L  L  LDLS N LS 
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364

Query: 345 -GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ-IGEL 402
            G           L  L L+ N     +      L  L  LD   + L           L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQSMNLSH 461
             L  L +S  N           L  L   L ++ NS      +      T+L  ++LS 
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 462 NNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
             L         ++  L  +N+S+NNL  
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  153 bits (389), Expect = 1e-40
 Identities = 70/361 (19%), Positives = 126/361 (34%), Gaps = 16/361 (4%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
           EL +  N  +  I      +     +  L+        +  L    P  +     +T+  
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL--GEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 171 LD--GNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP 228
                             L++++ +++A   +      ++    K   L +   +L   P
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 229 PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGI--YPNLT 286
                  K +    + N  S  I     +  SL  + L  N L+      +      +L 
Sbjct: 324 TLDLPFLKSLTL--TMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 287 YIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE-IGSLSQLVVLDLSSNQLSG 345
           ++DLS+N     +S  +   ++L  L    +++          SL +L+ LD+S      
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 346 EIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL-NLDSLDLSMNRLSGPIPKQIGELRD 404
           +       LT L+TL + GN         + A   NL  LDLS  +L          L  
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 405 LRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
           L+ L++S NNL          L  L  L D S+N +            SL   NL++N++
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTL-DCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 465 S 465
           +
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (379), Expect = 3e-39
 Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 36/421 (8%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
             D   S  P+ +      +D+S N +   +    F        +    L+   L    +
Sbjct: 18  CMDQKLSKVPDDIPSSTKNIDLSFNPLKI-LKSYSF--------SNFSELQWLDLSRCEI 68

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
                +       L+ L L GN +    P S   L+ L  L     +L+      IG L 
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 213 KLTDLHLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSL----KSCSSLYRVRL 266
            L  L++  N +    LP        L++   S+N+        L    ++      + +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 267 ESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGLAGNSIGGKIPA 325
             N +   ++        L  + L  N     +          L +  L       +   
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 326 EIGSLS--------QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA 377
           EI   S         +    L+      +   +   L  +S +SL G  I     E++  
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPK 305

Query: 378 LLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY 437
                SL +   +L          L  L+SL+L+ N    +I F+   L  L   LDLS 
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKG--SISFKKVALPSLS-YLDLSR 359

Query: 438 NSLT--GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495
           N+L+  G          SL+ ++LS N     + A+   +  L  ++  ++ L+      
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 496 S 496
           +
Sbjct: 419 A 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (343), Expect = 2e-34
 Identities = 64/329 (19%), Positives = 106/329 (32%), Gaps = 22/329 (6%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
           L   + S    L    + E  ++  N     D   F          L  +    L    +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFS-DDIVKF--------HCLANVSAMSLAGVSI 297

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
                E++        L++    L       L  L     L +  N+ S  I      L 
Sbjct: 298 KY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK---SLTLTMNKGS--ISFKKVALP 350

Query: 213 KLTDLHLFINKLSGLPPQVCKGGKLINFTA---SFNHFSGPIPTSLKSCSSLYRVRLESN 269
            L+ L L  N LS             +      SFN     +  +      L  +  + +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 270 ELTGDLEQD-FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI- 327
            L    E   F     L Y+D+SY   + +    +     L  L +AGNS      + + 
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 328 GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387
            + + L  LDLS  QL          L  L  L+++ N++          L +L +LD S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 388 MNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
            NR+           + L   +L+ N++ 
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (282), Expect = 1e-26
 Identities = 52/253 (20%), Positives = 91/253 (35%), Gaps = 35/253 (13%)

Query: 249 GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK 308
           G +   ++   ++   +    +L+  +  D  I  +   IDLS+N L+            
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDD--IPSSTKNIDLSFNPLKIL---------- 47

Query: 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS 368
                               + S+L  LDLS  ++          L  LS L L GN I 
Sbjct: 48  --------------KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNG-TIPFQIGNLV 427
              P     L +L++L     +L+      IG+L  L+ L+++ N ++   +P    NL 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSM----NLSHNNLSGEIPASLSSMLSLVAVNL 483
            L   +DLSYN +       L+ L     +    ++S N +   I       + L  + L
Sbjct: 154 NLVH-VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 484 SYNNLEGPLPDGS 496
             N     +    
Sbjct: 212 RGNFNSSNIMKTC 224

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  155 bits (395), Expect = 2e-43
 Identities = 76/355 (21%), Positives = 153/355 (43%), Gaps = 25/355 (7%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
           P   L      +LQ   ++  +       + +T L + G  ++      +  L++L  L 
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLN 72

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           +  NQ++   P  +  L KLT+L++  NK++ +   +     L     + ++ S   P  
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-- 127

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           L + + +Y + L +N    DL         L Y+ ++ ++++            L  L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSL 184

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
             N I    P  + SL+ L       NQ++   P  + N+T L++L +  N I+   P  
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           +  L  L  L++  N++S      + +L  L+ L++  N ++      + NL  L  L  
Sbjct: 239 LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSL-F 293

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           L+ N L  E    +  LT+L ++ LS N+++   P  L+S+  + + + +   ++
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (390), Expect = 1e-42
 Identities = 70/350 (20%), Positives = 143/350 (40%), Gaps = 25/350 (7%)

Query: 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQL 200
           G          ++   P    +        L    ++  +      L  +  L VA  ++
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 201 SGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSS 260
           +  I   I  L+ L  L+L  N+++ + P +    KL N     N  +    ++L++ ++
Sbjct: 57  A-SIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 261 LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320
           L  + L  + ++ D+         +  ++L  N    ++SP       L  L +  + + 
Sbjct: 112 LRELYLNEDNIS-DIS-PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168

Query: 321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380
              P  I +L+ L  L L+ NQ+    P  + +LT L   +   N I+   P  +  +  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL 440
           L+SL +  N+++   P  +  L  L  L +  N ++        +L  L+ L ++  N +
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAV--KDLTKLKML-NVGSNQI 277

Query: 441 TGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
           + +I   L  L+ L S+ L++N L  E    +  + +L  + LS N++  
Sbjct: 278 S-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 8e-35
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 21/308 (6%)

Query: 134 QPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVL 193
           Q +  L  L+   L  N ++      + N   LT L +  N ++    S+L NL++L  L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLREL 115

Query: 194 AVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT 253
            +  + +S   P  +  L+K+  L+L  N        +     L   T + +      P 
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP- 172

Query: 254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLG 313
            + + + LY + L  N++            +L Y     N++            +L  L 
Sbjct: 173 -IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLK 227

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
           +  N I    P  + +LSQL  L++ +NQ+S  I A + +LT+L  L++  N IS     
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQISDI--S 281

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
            +  L  L+SL L+ N+L     + IG L +L +L LSQN++    P    +L  +    
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDS-A 338

Query: 434 DLSYNSLT 441
           D +   + 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 3e-34
 Identities = 52/310 (16%), Positives = 114/310 (36%), Gaps = 45/310 (14%)

Query: 182 SSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFT 241
               +L++     +    ++  +      L  +T L +   K++ +              
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG------------ 61

Query: 242 ASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP 301
                        ++  ++L  + L  N++T            LT + +  N++      
Sbjct: 62  -------------IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDIS 104

Query: 302 KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS 361
                  L  L L  ++I    P  + +L+++  L+L +N    ++   + N+T L+ L+
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLT 161

Query: 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF 421
           +  + +    P  I  L +L SL L+ N++    P  +  L  L   +   N +    P 
Sbjct: 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216

Query: 422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAV 481
            + N+  L  L  +  N +T   P  L  L+ L  + +  N +S     ++  +  L  +
Sbjct: 217 -VANMTRLNSL-KIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 482 NLSYNNLEGP 491
           N+  N +   
Sbjct: 271 NVGSNQISDI 280

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 6e-33
 Identities = 55/281 (19%), Positives = 113/281 (40%), Gaps = 24/281 (8%)

Query: 211 LSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270
            + L  L   IN++           + I         +  +    +   S+ ++ +   +
Sbjct: 2   AATLATLPAPINQIFPDA----DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK 55

Query: 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330
           +   ++       NL Y++L+ N++            KLT L +  N I     + + +L
Sbjct: 56  VA-SIQ-GIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNL 109

Query: 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR 390
           + L  L L+ + +S   P  + NLT++ +L+L  N         +  +  L+ L ++ ++
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESK 166

Query: 391 LSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK 450
           +    P  I  L DL SLSL+ N +    P    +L  L        N +T   P  +  
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYF-TAYVNQITDITP--VAN 219

Query: 451 LTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 491
           +T L S+ + +N ++   P  L+++  L  + +  N +   
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
            +TL+     I+   P     L       L    ++  +     EL  +  L ++   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML 476
            +I   I  L  L+ L +L+ N +T   P  L  L  L ++ +  N ++    ++L ++ 
Sbjct: 58  -SIQG-IEYLTNLEYL-NLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 477 SLVAVNLSYNNLEGPLP 493
           +L  + L+ +N+    P
Sbjct: 111 NLRELYLNEDNISDISP 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (373), Expect = 2e-39
 Identities = 90/360 (25%), Positives = 161/360 (44%), Gaps = 29/360 (8%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
            +  L  L      +N L+   P  + N   L  + ++ N ++   P  L NL++L  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           + +NQ++   P  +  L+ L  L L  N +S +   +     L   +   N  +   P  
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLKP-- 172

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           L + ++L R+ + SN+++ D+        NL  +  + N++        G    L  L L
Sbjct: 173 LANLTTLERLDISSNKVS-DIS-VLAKLTNLESLIATNNQISD--ITPLGILTNLDELSL 228

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
            GN +  K    + SL+ L  LDL++NQ+S   P  +  LT+L+ L L  N IS   P  
Sbjct: 229 NGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           +  L  L +L+L+ N+L    P  I  L++L  L+L  NN++   P  + +L  LQ L  
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-F 337

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
              N ++    + L  LT++  ++  HN +S   P  L+++  +  + L+         +
Sbjct: 338 FYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (370), Expect = 8e-39
 Identities = 83/357 (23%), Positives = 146/357 (40%), Gaps = 29/357 (8%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
             T L      +L    ++  +     +   +T L  D   +       +  L++L  + 
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQIN 74

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
            ++NQL+   P  +  L+KL D+ +  N+++ + P +     L   T   N  +   P  
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-- 129

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           LK+ ++L R+ L SN ++           +L  +                    L  L +
Sbjct: 130 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDI 184

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
           + N +     + +  L+ L  L  ++NQ+S   P  +G LT L  LSLNGN +       
Sbjct: 185 SSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGT 238

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           + +L NL  LDL+ N++S   P  +  L  L  L L  N ++   P  +  L  L + L+
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN-LE 293

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 491
           L+ N L    P  +  L +L  + L  NN+S   P  +SS+  L  +    N +   
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (352), Expect = 2e-36
 Identities = 70/359 (19%), Positives = 127/359 (35%), Gaps = 26/359 (7%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
           P+  L  L    L  N +S      +     L  L+             L NL+ L  L 
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLD 183

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           ++SN++S    + +  L+ L  L    N++S + P +     L   + + N        +
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GT 238

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           L S ++L  + L +N+++            LT + L  N++             LT L L
Sbjct: 239 LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLEL 294

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
             N +    P  I +L  L  L L  N +S   P  + +LT+L  L    N +S      
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           +  L N++ L    N++S   P  +  L  +  L L+             N+     + +
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493
           ++   +    PA +    S    +++ N  S        +    V +        G + 
Sbjct: 407 VTGALIA---PATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 399 IGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMN 458
              L +     L + N+  T+     +L  +  L       +       +E L +L  +N
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTL-QADRLGIK--SIDGVEYLNNLTQIN 74

Query: 459 LSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493
            S+N L+   P  L ++  LV + ++ N +    P
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 37/169 (21%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
            L +  NN++              P++ L  L+     +N +S      + N   +  L+
Sbjct: 313 YLTLYFNNISDIS-----------PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 171 LDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEI----------------------PANI 208
              N +S   P  L NL+ +  L +     +                         PA I
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

Query: 209 GTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
                 T+  +  N  S          + +        FSG +   LK+
Sbjct: 418 SDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  142 bits (360), Expect = 1e-38
 Identities = 56/349 (16%), Positives = 102/349 (29%), Gaps = 46/349 (13%)

Query: 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTD 216
                +      L   G+    P    L                +          +    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQI 60

Query: 217 LHLFINKLSGLPP--QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
                  L       +       +             P      S               
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLS--------------- 104

Query: 275 LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLV 334
                    +L ++ +    L  E+     +   L  L LA N +   +PA I SL++L 
Sbjct: 105 ---------HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 335 VLDLSSNQLSGEIPAQIGN---------LTELSTLSLNGNDISGPIPEEIGALLNLDSLD 385
            L + +     E+P  + +         L  L +L L    I   +P  I  L NL SL 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLK 212

Query: 386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP 445
           +  + LS  +   I  L  L  L L         P   G    L+ L+    ++L   +P
Sbjct: 213 IRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLP 270

Query: 446 AQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
             + +LT L+ ++L        +P+ ++ + +   + +   +L+  L  
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 3e-34
 Identities = 59/342 (17%), Positives = 98/342 (28%), Gaps = 75/342 (21%)

Query: 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALD--GNFLSGPIPSSLGNLSDLAVLAVAS 197
                   +         + + +      +AL+     L    P     LS L  + + +
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDA 113

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
             L  E+P  +   + L  L L  N L  LP  +                          
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARNPLRALPASIAS------------------------ 148

Query: 258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
                        L             L  + +               C +LT L     
Sbjct: 149 -------------LN-----------RLRELSIRA-------------CPELTEL---PE 168

Query: 318 SIG-GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376
            +       E   L  L  L L    +   +PA I NL  L +L +  + +S  +   I 
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 377 ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
            L  L+ LDL         P   G    L+ L L   +   T+P  I  L  L+  LDL 
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK-LDLR 285

Query: 437 YNSLTGEIPAQLEKLTSLQSMNLSHN---NLSGEIPASLSSM 475
                  +P+ + +L +   + +  +    L    P +  + 
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 3e-33
 Identities = 54/256 (21%), Positives = 93/256 (36%), Gaps = 23/256 (8%)

Query: 139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASN 198
             G     L+   L  + P++      L  + +D   L   +P ++   + L  L +A N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARN 137

Query: 199 QLSGEIPANIGTLSKLTDLHLF-INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
            L   +PA+I +L++L +L +    +L+ LP  +                S       + 
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLA---------------STDASGEHQG 181

Query: 258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
             +L  +RLE   +   L        NL  + +  + L   + P      KL  L L G 
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

Query: 318 SIGGKIPAEIGSLSQLVVLDLSS-NQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376
           +     P   G  + L  L L   + L   +P  I  LT+L  L L G      +P  I 
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 377 ALLNLDSLDLSMNRLS 392
            L     + +  +  +
Sbjct: 299 QLPANCIILVPPHLQA 314

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (364), Expect = 6e-38
 Identities = 64/354 (18%), Positives = 130/354 (36%), Gaps = 22/354 (6%)

Query: 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201
            K   + D+ L   +     +   +  L L GN LS    + L   + L +L ++SN L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
                ++ +LS L  L L  N +  L      G  +    A+ N+ S    +  +   ++
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNI 125

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLGLAGNSIG 320
           Y   L +N++T   + D G    + Y+DL  N +     +        L  L L  N I 
Sbjct: 126 Y---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI- 181

Query: 321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380
             +  ++   ++L  LDLSSN+L+  +  +  +   ++ +SL  N +   I + +    N
Sbjct: 182 YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238

Query: 381 LDSLDLSMNRLS-GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS 439
           L+  DL  N    G +     + + +++++         +  Q      +  L       
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYC 295

Query: 440 LTGEIPAQLEKLTSLQSMNLSHNNLSG----EIPASLSSMLSLVAVNLSYNNLE 489
                    ++L +L+    +  +  G     +     +      ++       
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (337), Expect = 3e-34
 Identities = 54/336 (16%), Positives = 111/336 (33%), Gaps = 16/336 (4%)

Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           I E   N     +  +  + L   + S   +  ++  L ++ N LS    A++   +KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL 275
            L+L  N L      +     L     + N+        L    S+  +   +N ++   
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS--- 112

Query: 276 EQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG-KIPAEIGSLSQLV 334
                       I L+ N++        G   ++  L L  N I          S   L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 335 VLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP 394
            L+L  N +  ++  Q+    +L TL L+ N ++  +  E  +   +  + L  N+L   
Sbjct: 173 HLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL- 228

Query: 395 IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL 454
           I K +   ++L    L  N  +             Q +  ++  ++        E+ T  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 455 QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
              +                +++L     +  + +G
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-33
 Identities = 57/406 (14%), Positives = 111/406 (27%), Gaps = 51/406 (12%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
              V+ +++       L              +K   L  N LS     ++     L LL 
Sbjct: 14  IEKVTDSSLKQ-ALASLR--------QSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 171 LDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ 230
           L  N L       L +LS L  L + +N +       +     +  LH   N +S +   
Sbjct: 65  LSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCS 117

Query: 231 VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG-DLEQDFGIYPNLTYID 289
             +G    N   + N  +          S +  + L+ NE+   +  +       L +++
Sbjct: 118 RGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA 349
           L YN +            KL  L L+ N +   +  E  S + +  + L +N+L   I  
Sbjct: 176 LQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 350 QIGNLTELSTLSLNGNDISGPIPEEIGALLN-----------------------LDSLDL 386
            +     L    L GN        +  +                                
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 387 SMNRLSGPIPKQIGELRDLRSLSLS----QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442
                          L  L+    +    Q +    +  +  N    +++ D        
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI-DALKEQYRT 350

Query: 443 EIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            I     +  +  ++      L  ++     +   L          
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.4 bits (227), Expect = 6e-20
 Identities = 59/387 (15%), Positives = 111/387 (28%), Gaps = 50/387 (12%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
            L  + NN++  +                 G KN  L +N ++     + G    +  L 
Sbjct: 103 TLHAANNNISR-VSCSRGQ-----------GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 171 LDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP 229
           L  N +          +   L  L +  N +  ++   +   +KL  L L  NKL+ + P
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGP 208

Query: 230 QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID 289
           +      +   +   N     I  +L+   +L    L  N       +DF    N     
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQT 266

Query: 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG----------------------------G 321
           ++   ++        +C   TL                                      
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
           ++  E  + ++   +D    Q    I           TL      +   +     A   L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 382 DSL---DLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYN 438
           D      +    L     +Q   L+ LR++      +         N +   D+      
Sbjct: 387 DGTLQQAVGQIELQHATEEQ-SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

Query: 439 SLTGEIPAQLEKLTSLQSMNLSHNNLS 465
            L  E  A+L+KL     + L+  N +
Sbjct: 446 QLAEEN-ARLKKLNGEADLALASANAT 471

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (334), Expect = 5e-35
 Identities = 62/329 (18%), Positives = 115/329 (34%), Gaps = 40/329 (12%)

Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           I E   N     +  +  + L   + S   +  ++  L ++ N LS    A++   +KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL 275
            L+L  N L                              L+S S+L  + L +N +    
Sbjct: 62  LLNLSSNVLYETLD-------------------------LESLSTLRTLDLNNNYVQ--- 93

Query: 276 EQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVV 335
             +  + P++  +  + N +   VS    + Q    + LA N I      + G  S++  
Sbjct: 94  --ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 336 LDLSSNQLSG-EIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP 394
           LDL  N++          +   L  L+L  N I   +  ++     L +LDLS N+L+  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAF- 205

Query: 395 IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEKLTS 453
           +  +      +  +SL  N L   I   +     L+   DL  N    G +     K   
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH-FDLRGNGFHCGTLRDFFSKNQR 263

Query: 454 LQSMNLSHNNLSGEIPASLSSMLSLVAVN 482
           +Q++                ++ +L    
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (333), Expect = 6e-35
 Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 16/321 (4%)

Query: 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201
            K   + D+ L   +     +   +  L L GN LS    + L   + L +L ++SN L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
            E    + +LS L  L L  N +  L      G  +    A+ N+ S    +  +   ++
Sbjct: 72  -ETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNI 125

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLGLAGNSIG 320
           Y   L +N++T   + D G    + Y+DL  N +     +        L  L L  N I 
Sbjct: 126 Y---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI- 181

Query: 321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380
             +  ++   ++L  LDLSSN+L+  +  +  +   ++ +SL  N +   I + +    N
Sbjct: 182 YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238

Query: 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL 440
           L+  DL  N        +    ++ R  ++++  +   +  Q      +  L        
Sbjct: 239 LEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCC 296

Query: 441 TGEIPAQLEKLTSLQSMNLSH 461
                   ++L +L   +  H
Sbjct: 297 EDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 5e-32
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 39/280 (13%)

Query: 211 LSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270
            ++     +  + L      +                        +S  ++  + L  N 
Sbjct: 9   GNRYKIEKVTDSSLKQALASL-----------------------RQSAWNVKELDLSGNP 45

Query: 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330
           L+     D   +  L  ++LS N L    +        L  L L  N +      E+   
Sbjct: 46  LSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVG 98

Query: 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR 390
             +  L  ++N +S  +            + L  N I+     + G    +  LDL +N 
Sbjct: 99  PSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 391 LSG-PIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE 449
           +      +       L  L+L  N +   +  Q+     L+ L DLS N L   +  + +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL-DLSSNKLA-FMGPEFQ 211

Query: 450 KLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
               +  ++L +N L   I  +L    +L   +L  N   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 25/167 (14%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLD 382
           I     + ++  +  ++ + L   + +   +   +  L L+GN +S     ++     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 383 SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG 442
            L+LS N L   +   +  L  LR+L L+ N +      ++     ++  L  + N+++ 
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIET-LHAANNNIS- 112

Query: 443 EIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
            +     +    +++ L++N ++            +  ++L  N ++
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 22/235 (9%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
            L  + NN++  +                 G KN  L +N ++     + G    +  L 
Sbjct: 103 TLHAANNNISR-VSCSRGQ-----------GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 171 LDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP 229
           L  N +          +   L  L +  N +  ++   +   +KL  L L  NKL+ + P
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGP 208

Query: 230 QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID 289
           +      +   +   N     I  +L+   +L    L  N       +DF    N     
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQT 266

Query: 290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS 344
           ++   ++        +C   TL              ++ +     ++ L  +   
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCC-----EDLPAPFADRLIALGHHHHH 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (332), Expect = 4e-34
 Identities = 72/373 (19%), Positives = 147/373 (39%), Gaps = 29/373 (7%)

Query: 95  DLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSG 154
             ++    + L++D    DV  +         ++   ++  +     +     +++ +  
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDM----QTQDVYFGFEDITLNNQKIVT---FKNSTMRK 59

Query: 155 RIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSK 213
                + + + + LL L+   +      +      +  L +  N +   +P ++   +  
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPL 118

Query: 214 LTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT 272
           LT L L  N LS LP  +     KL   + S N+       + ++ +SL  ++L SN LT
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 273 GDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQ 332
                D  + P+L + ++SYN L             +  L  + NSI   +        +
Sbjct: 179 ---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG--PVNVE 227

Query: 333 LVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392
           L +L L  N L+ +    + N   L  + L+ N++   +      +  L+ L +S NRL 
Sbjct: 228 LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT 452
             +      +  L+ L LS N+L   +         L++ L L +NS+   +        
Sbjct: 286 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN-LYLDHNSIV-TLKLST--HH 339

Query: 453 SLQSMNLSHNNLS 465
           +L+++ LSHN+  
Sbjct: 340 TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 1e-31
 Identities = 63/367 (17%), Positives = 122/367 (33%), Gaps = 43/367 (11%)

Query: 124 DPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSS 183
            P     D N          +  +           E        ++    + +     + 
Sbjct: 7   QPEYKCIDSNLQY--DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 184 LGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA 242
           L +   + +L +   Q+  EI          +  L++  N +  LPP V           
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----------- 112

Query: 243 SFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK 302
                        ++   L  + LE N+L+      F   P LT + +S N L+      
Sbjct: 113 ------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 303 WGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL 362
           +     L  L L+ N +   +   +  +  L   ++S N LS      +     +  L  
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422
           + N I+  +       + L  L L  N L+      +     L  + LS N L   +   
Sbjct: 213 SHNSINV-VRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVN 482
              +  L+ L  +S N L   +    + + +L+ ++LSHN+L   +  +      L  + 
Sbjct: 268 FVKMQRLERL-YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 483 LSYNNLE 489
           L +N++ 
Sbjct: 325 LDHNSIV 331

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (338), Expect = 4e-34
 Identities = 85/455 (18%), Positives = 157/455 (34%), Gaps = 71/455 (15%)

Query: 80  TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGL 139
             ++L+   +  T+ D  + S  +L       L ++ N +   +    F        +GL
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHL-----STLILTGNPIQS-LALGAF--------SGL 99

Query: 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFL-SGPIPSSLGNLSDLAVLAVASN 198
             L+  +  +  L+      IG+ K L  L +  N + S  +P    NL++L  L ++SN
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 199 QLSGEIPANIGTLSKLT----DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT- 253
           ++      ++  L ++      L L +N ++ + P   K  +L   T   N  S  +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 254 ------------------------------SLKSCSSLYRVRLESNELTG---DLEQDFG 280
                                         +L+   +L         L     D+   F 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 281 IYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339
              N++   L    ++  +        Q L L+                 L  L  L  +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFT 333

Query: 340 SNQLSGEIPAQIGNLTELSTLSLNGNDIS--GPIPEEIGALLNLDSLDLSMNRLSGPIPK 397
           SN+          +L  L  L L+ N +S  G   +      +L  LDLS N +   +  
Sbjct: 334 SNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQ 455
               L  L  L    +NL     F     + L++L  LD+S+             L+SL+
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 456 SMNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLE 489
            + ++ N+        + + L +L  ++LS   LE
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (336), Expect = 1e-33
 Identities = 80/447 (17%), Positives = 138/447 (30%), Gaps = 57/447 (12%)

Query: 80  TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGL 139
            ++    T LA +L +        L      EL+V+ N +     P  F          L
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLK-----ELNVAHNLIQSFKLPEYFS--------NL 148

Query: 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTL----LALDGNFLSGPIPSSLGNLSDLAVLAV 195
             L++  L  N +      ++     + L    L L  N ++   P +   +  L  L +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTL 207

Query: 196 ASNQLSGEIPAN-IGTLSKLTDLHLFI------NKLSGLPPQVCKGGKLINFT----ASF 244
            +N  S  +    I  L+ L    L +        L        +G   +       A  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 245 NHFSGPIPTSLKSCSSLYRVRLESNELTG-------------------DLEQDFGIYPNL 285
           +++   I       +++    L S  +                       +       +L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG--GKIPAEIGSLSQLVVLDLSSNQL 343
             +  + N+     +        L  L L+ N +   G         + L  LDLS N +
Sbjct: 328 KRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 344 SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL-NLDSLDLSMNRLSGPIPKQIGEL 402
              + +    L +L  L    +++       +   L NL  LD+S              L
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 403 RDLRSLSLSQNNLNGTIPFQI-GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461
             L  L ++ N+        I   L  L  L DLS   L    P     L+SLQ +N++ 
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 462 NNLSGEIPASLSSMLSLVAVNLSYNNL 488
           N L          + SL  + L  N  
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (309), Expect = 3e-30
 Identities = 85/403 (21%), Positives = 141/403 (34%), Gaps = 36/403 (8%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  ++L++  +  +++  D      +       LD+S N M   I P  F +       
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQM-PLLNLSLDLSLNPMNF-IQPGAFKE------- 199

Query: 138 GLLGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLAL------DGNFLSGPIPSSLGNLSDL 190
             + L    L++N  S  + +  I     L +  L      +   L     S+L  L +L
Sbjct: 200 --IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 191 AVLAVASNQLSGEIPANIGTLSKLTDLH---LFINKLSGLPPQVCKGGKLINFTASFNHF 247
            +       L   +   I   + LT++    L    +  +       G   +       F
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKF 316

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ--GEVSPKWGK 305
                  LKS   L      SN+            P+L ++DLS N L   G  S     
Sbjct: 317 GQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLN 363
              L  L L+ N +   + +    L QL  LD   + L  ++       +L  L  L ++
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 429

Query: 364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQ 422
                         L +L+ L ++ N         I  ELR+L  L LSQ  L    P  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465
             +L  LQ L +++ N L        ++LTSLQ + L  N   
Sbjct: 490 FNSLSSLQVL-NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 2e-29
 Identities = 78/423 (18%), Positives = 142/423 (33%), Gaps = 40/423 (9%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
             +L+F   P+ L F    LD+S N +   +    F             L+   L    +
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSF--------FSFPELQVLDLSRCEI 64

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
                    +   L+ L L GN +      +   LS L  L      L+      IG L 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 213 KLTDLHLFINKLS--GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL----YRVRL 266
            L +L++  N +    LP        L +   S N       T L+    +      + L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 267 ESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW----GKCQKLTLLGLAGNSIGGK 322
             N +   ++        L  + L  N     V           +   L+     + G  
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 323 IPAEIGSLSQLVVLDLSSNQLSG------EIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376
              +  +L  L  L +   +L+       +I      LT +S+ SL    I         
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 377 ALL-NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435
               +L+ ++    +          +L+ L+ L+ + N           +L  L+  LDL
Sbjct: 304 FGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLE-FLDL 354

Query: 436 SYNSLT--GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 493
           S N L+  G         TSL+ ++LS N +   + ++   +  L  ++  ++NL+  + 
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MS 412

Query: 494 DGS 496
           + S
Sbjct: 413 EFS 415

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 39/201 (19%), Positives = 62/201 (30%), Gaps = 19/201 (9%)

Query: 78  SVTEINLANTGLAG-TLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
           S+  ++L+  GL+             +L       LD+S N +        F        
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLK-----YLDLSFNGVI--TMSSNFL------- 393

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
            GL  L++   Q + L       +  + + L  L +               LS L VL +
Sbjct: 394 -GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 196 ASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPT 253
           A N        +I   L  LT L L   +L  L P        L     + N        
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 254 SLKSCSSLYRVRLESNELTGD 274
                +SL ++ L +N     
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCS 533

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  130 bits (330), Expect = 2e-33
 Identities = 78/352 (22%), Positives = 132/352 (37%), Gaps = 50/352 (14%)

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
               L+  L   + L+  +P E  N K  T      +      P   G   ++AV  +  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
                          +  +L L    LS LP        L +  AS N  +  +P   +S
Sbjct: 68  CL-----------DRQAHELELNNLGLSSLPELP---PHLESLVASCNSLT-ELPELPQS 112

Query: 258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
             SL         L+          P L Y+ +S N+L  E  P+      L ++ +  N
Sbjct: 113 LKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNN 163

Query: 318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA 377
           S+  K+P    SL     +   +NQL  E+P ++ NL  L+ +  + N +   +P+    
Sbjct: 164 SL-KKLPDLPPSLEF---IAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPL- 215

Query: 378 LLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY 437
             +L+S+    N L      ++  L  L ++    N L  T+P    +L    + L++  
Sbjct: 216 --SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL----EALNVRD 266

Query: 438 NSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           N LT ++P   + LT L       + LS   P       +L  +N S N + 
Sbjct: 267 NYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  127 bits (320), Expect = 5e-32
 Identities = 84/392 (21%), Positives = 140/392 (35%), Gaps = 60/392 (15%)

Query: 91  GTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN 150
           G   ++  S   + L    +EL+++   ++        P+           L++ +   N
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLSS------LPEL-------PPHLESLVASCN 101

Query: 151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
            L+  +PE   + K L +   +   LS   P        L  L V++NQL  ++P  +  
Sbjct: 102 SLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQN 151

Query: 211 LSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE 270
            S L  + +  N L  LP        L    A  N         L++   L  +  ++N 
Sbjct: 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS 206

Query: 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330
           L   L        +L  I    N L  E  P+      LT +    N +   +P    SL
Sbjct: 207 LK-KLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLL-KTLPDLPPSL 259

Query: 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR 390
                L++  N L+ ++P    +LT L       + +S   P       NL  L+ S N 
Sbjct: 260 EA---LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNE 308

Query: 391 LSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK 450
           +             L  L++S N L   +P     L      L  S+N L  E+P   + 
Sbjct: 309 IR----SLCDLPPSLEELNVSNNKLI-ELPALPPRLE----RLIASFNHLA-EVPELPQN 358

Query: 451 LTSLQSMNLSHNNLSGEIPASLSSMLSLVAVN 482
           L  L   ++ +N L  E P    S+  L   +
Sbjct: 359 LKQL---HVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (289), Expect = 7e-28
 Identities = 67/353 (18%), Positives = 122/353 (34%), Gaps = 61/353 (17%)

Query: 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201
           L+   + +N L  ++PE + N   L ++ +D N L   +P    +L     +A  +NQL 
Sbjct: 133 LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPSLE---FIAAGNNQLE 186

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
            E+P  +  L  LT ++   N L  LP        L +  A  N         L++   L
Sbjct: 187 -ELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE--ELPELQNLPFL 239

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI-- 319
             +  ++N L   L        +L  +++  N L  ++         L +     + +  
Sbjct: 240 TTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 320 -----------GGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS 368
                        +I +       L  L++S+N+L  E+PA    L  L     + N ++
Sbjct: 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA 350

Query: 369 GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRD----------------LRSLSLSQ 412
             +PE      NL  L +  N L    P     + D                L+ L +  
Sbjct: 351 E-VPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 413 NNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465
           N L    P    ++      L ++   +        E    L+     H++  
Sbjct: 406 NPLR-EFPDIPESVE----DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  106 bits (266), Expect = 6e-25
 Identities = 48/293 (16%), Positives = 104/293 (35%), Gaps = 34/293 (11%)

Query: 205 PANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRV 264
           P N+   + L +     + L+ +P +         +  +++ +    P        +   
Sbjct: 5   PRNVS-NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 265 RLESNELTG---------DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA 315
           RL                 L     + P+L  +  S N L  E+       + L +    
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 316 GNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI 375
             ++    P        L  L +S+NQL  ++P ++ N + L  + ++ N +   +P+  
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP 172

Query: 376 GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435
               +L+ +    N+L      ++  L  L ++    N+L   +P    +L      +  
Sbjct: 173 P---SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLE----SIVA 222

Query: 436 SYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
             N L      +L+ L  L ++   +N L   +P    S+ +L   +    +L
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 39/204 (19%), Positives = 80/204 (39%), Gaps = 33/204 (16%)

Query: 299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTE-- 356
           ++P+      L       +++  ++P E  ++        + ++     P   G   E  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 357 -----------LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL 405
                         L LN   +S  +PE      +L+SL  S N L+  +P+    L+ L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSL 116

Query: 406 RSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465
              + +   L+   P        L+  L +S N L  ++P +L+  + L+ +++ +N+L 
Sbjct: 117 LVDNNNLKALSDLPP-------LLEY-LGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK 166

Query: 466 GEIPASLSSMLSLVAVNLSYNNLE 489
            ++P    S+  +       N LE
Sbjct: 167 -KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 49/304 (16%), Positives = 90/304 (29%), Gaps = 72/304 (23%)

Query: 97  DFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI 156
           +  + P L       +    N++         PD         L L++ +  +N+L    
Sbjct: 190 ELQNLPFLT-----AIYADNNSLKK------LPD-------LPLSLESIVAGNNILE--E 229

Query: 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL-- 214
             E+ N   LT +  D N L   +P    +L  L V     N L+ ++P    +L+ L  
Sbjct: 230 LPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVR---DNYLT-DLPELPQSLTFLDV 284

Query: 215 ---------------TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCS 259
                            L+   N++  L         L     S N     +P       
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLIE-LPALPPRLE 340

Query: 260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ---------------GEVSPKWG 304
            L       N L  ++ +      NL  + + YN L+                 ++    
Sbjct: 341 RLI---ASFNHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 305 KCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364
             Q L  L +  N +  + P    S+  L    ++S ++            +L       
Sbjct: 394 LPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 365 NDIS 368
           +   
Sbjct: 450 HHHH 453

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  132 bits (334), Expect = 2e-33
 Identities = 67/339 (19%), Positives = 124/339 (36%), Gaps = 44/339 (12%)

Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
           + ++ L+  +P+ +     +T L +  N L+  +P+    L     L V+ NQL+  +P 
Sbjct: 47  VGESGLT-TLPDCLPAH--ITTLVIPDNNLTS-LPALPPELR---TLEVSGNQLT-SLPV 98

Query: 207 NIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRL 266
               L +L+     +  L  LP        L       N  +  +P        L    +
Sbjct: 99  LPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTS-LPVLPPGLQELS---V 148

Query: 267 ESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE 326
             N+L   L         L  +    N+L   +         L  L ++ N +   +P  
Sbjct: 149 SDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTL 199

Query: 327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL 386
              L +L      +N+L+  +PA    L EL    ++GN ++  +P        L  L +
Sbjct: 200 PSELYKL---WAYNNRLT-SLPALPSGLKELI---VSGNRLTS-LPVLPS---ELKELMV 248

Query: 387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPA 446
           S NRL+  +P        L SLS+ +N L   +P  + +L     + +L  N L+     
Sbjct: 249 SGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTV-NLEGNPLSERTLQ 302

Query: 447 QLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSY 485
            L ++TS    +           ++     +L      +
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (331), Expect = 5e-33
 Identities = 69/303 (22%), Positives = 113/303 (37%), Gaps = 44/303 (14%)

Query: 187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNH 246
            +  AVL V  + L+  +P  +     +T L +  N L+ LP       +L     S N 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLPALP---PELRTLEVSGNQ 92

Query: 247 FSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKC 306
            +  +P        L         L             L  + +  N+L   +       
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPGL 143

Query: 307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND 366
           Q+L++   + N +   +PA    L +L      +NQL+  +P     L ELS   ++ N 
Sbjct: 144 QELSV---SDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQELS---VSDNQ 192

Query: 367 ISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL 426
           ++  +P     L  L + +  +  L    P     L+    L +S N L  ++P     L
Sbjct: 193 LAS-LPTLPSELYKLWAYNNRLTSL----PALPSGLK---ELIVSGNRLT-SLPVLPSEL 243

Query: 427 VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
                 L +S N LT  +P     L SL   ++  N L+  +P SL  + S   VNL  N
Sbjct: 244 K----ELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 487 NLE 489
            L 
Sbjct: 295 PLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (301), Expect = 4e-29
 Identities = 67/365 (18%), Positives = 119/365 (32%), Gaps = 62/365 (16%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLA 170
            L+V  + +T  +   L              +   ++ DN L+  +P        L  L 
Sbjct: 44  VLNVGESGLTT-LPDCLPAH-----------ITTLVIPDNNLT-SLPALPPE---LRTLE 87

Query: 171 LDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ 230
           + GN L+  +P     L +L++ +     L           S L  L +F N+L+ LP  
Sbjct: 88  VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVL 139

Query: 231 VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL 290
                 L   + S N  +  +P        L+     +N+LT  L         L  + +
Sbjct: 140 P---PGLQELSVSDNQLAS-LPALPSELCKLW---AYNNQLT-SLPMLPS---GLQELSV 188

Query: 291 SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL-----------------SQL 333
           S N+L   +     +  KL        S+    PA    L                 S+L
Sbjct: 189 SDNQLA-SLPTLPSELYKLWAYNNRLTSL----PALPSGLKELIVSGNRLTSLPVLPSEL 243

Query: 334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG 393
             L +S N+L+  +P     L  LS   +  N ++  +PE +  L +  +++L  N LS 
Sbjct: 244 KELMVSGNRLT-SLPMLPSGLLSLS---VYRNQLTR-LPESLIHLSSETTVNLEGNPLSE 298

Query: 394 PIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS 453
              + + E+      S      +            L               PA  ++   
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

Query: 454 LQSMN 458
               +
Sbjct: 359 FGQED 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (332), Expect = 3e-33
 Identities = 81/438 (18%), Positives = 156/438 (35%), Gaps = 46/438 (10%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  ++L+   +   +   D  +  NL       L +  + +   I+   F         
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQ-----VLILKSSRINT-IEGDAF--------Y 71

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVA 196
            L  L++  L DN LS       G    L  L L GN      + S   NL++L  L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 197 SNQLSGEIPAN-IGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTS 254
           + +   EI       L+ L +L +    L     Q  K    + + T   +  +  +   
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKL----- 309
               SS+  + L    L         +    + +     R        + +  KL     
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 310 -----TLLGLAGNSIGGKIPAEIGSLS--------QLVVLDLSSNQLSGEIPAQIGNLTE 356
                       N +G   P+E   +S         +  L +    L  ++      L +
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ---IGELRDLRSLSLSQN 413
           +  +++  + +          L +L+ LDLS N +     K     G    L++L LSQN
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 414 NLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471
           +L  ++      L+ L++L  LD+S N+    +P   +    ++ +NLS   +   +   
Sbjct: 372 HLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428

Query: 472 LSSMLSLVAVNLSYNNLE 489
           +    +L  +++S NNL+
Sbjct: 429 IPQ--TLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (325), Expect = 2e-32
 Identities = 75/436 (17%), Positives = 131/436 (30%), Gaps = 50/436 (11%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           S+  +NL             F +  NL       L +        I    F         
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQ-----TLRIGNVETFSEIRRIDF--------A 145

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
           GL  L    ++   L     + + + + +  L L  +  +  +      LS +  L +  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
             L+    + +      + +     + S L                  +           
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD-----ESFNELLKLLRYILELSEVEFDD 260

Query: 258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
           C+         +E     E        +  + +    L  ++S  +   +K+  + +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 318 SIGGKIPAEIGS-LSQLVVLDLSSNQLSGEI---PAQIGNLTELSTLSLNGNDIS--GPI 371
            +   +P      L  L  LDLS N +  E     A  G    L TL L+ N +      
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD 431
            E +  L NL SLD+S N    P+P        +R L+LS   +   +         L+ 
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLE- 434

Query: 432 LLDLSYNSLTGEIPAQLEKLT-------------------SLQSMNLSHNNLSGEIPASL 472
           +LD+S N+L       L +L                     L  M +S N L        
Sbjct: 435 VLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 473 SSMLSLVAVNLSYNNL 488
             + SL  + L  N  
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (252), Expect = 7e-23
 Identities = 43/312 (13%), Positives = 106/312 (33%), Gaps = 23/312 (7%)

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSL 255
           S   +  IP+ +   + +  L L  NK++ +     +    L       +  +     + 
Sbjct: 14  SRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70

Query: 256 KSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLGL 314
            S  SL  + L  N L+      FG   +L Y++L  N  Q   V+  +     L  L +
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 315 AGNSIGGKIPAE-IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
                  +I       L+ L  L++ +  L       + ++ ++  L+L+ ++ +  +  
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD-- 431
               L ++  L+L    L+      +        +       +         L+ L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 432 -------LLDLSYNSLTGEIPAQLE--------KLTSLQSMNLSHNNLSGEIPASLSSML 476
                    D + N L    P++ +        +  +++ +++    L  ++    S + 
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 477 SLVAVNLSYNNL 488
            +  + +  + +
Sbjct: 311 KVKRITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 60/363 (16%), Positives = 113/363 (31%), Gaps = 37/363 (10%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            +  + L  +  A  L ++      ++       L++   N+         P D+     
Sbjct: 173 DIHHLTLHLSESA-FLLEIFADILSSV-----RYLELRDTNLAR-FQFSPLPVDEVSSPM 225

Query: 138 GLLGLKNFLLQD----------NMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNL 187
             L  +  +L D            +      E  +C L  L   + +             
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA---SF 244
             +  L +    L  ++      L K+  + +  +K+  +P    +   L +      S 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH--LKSLEFLDLSE 343

Query: 245 NHFS---GPIPTSLKSCSSLYRVRLESNELT--GDLEQDFGIYPNLTYIDLSYNRLQGEV 299
           N              +  SL  + L  N L       +      NLT +D+S N     +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402

Query: 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELST 359
                  +K+  L L+   I   +   I     L VLD+S+N L          L  L  
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSL---FLPRLQE 455

Query: 360 LSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI 419
           L ++ N +   +P+       L  + +S N+L          L  L+ + L  N  + + 
Sbjct: 456 LYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513

Query: 420 PFQ 422
           P  
Sbjct: 514 PRI 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (330), Expect = 1e-32
 Identities = 77/352 (21%), Positives = 131/352 (37%), Gaps = 30/352 (8%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
              L L  N++     SS   L  L +L + S      I       L  L  L L  +K+
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 225 SGLPPQVCKG-GKLINFTASFNHFSGPI--PTSLKSCSSLYRVRLESNELTG-DLEQDFG 280
             L P   +G   L      F   S  +      ++  +L R+ L  N++    L   FG
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 281 IYPNLTYIDLSYNRLQGEVSP---KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQ----- 332
              +L  ID S N++   V     +  + + L+   LA NS+  ++  + G         
Sbjct: 146 KLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 333 -LVVLDLSSNQLSGEIPAQIGN------------LTELSTLSLNGNDISGPIPEEIGAL- 378
            L +LD+S N  + +I     N               +       ++I  P       L 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 379 -LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY 437
             ++  LDLS   +     +    L+DL+ L+L+ N +N         L  LQ +L+LSY
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ-VLNLSY 323

Query: 438 NSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           N L     +    L  +  ++L  N+++     +   +  L  ++L  N L 
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (323), Expect = 1e-31
 Identities = 74/446 (16%), Positives = 145/446 (32%), Gaps = 53/446 (11%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           +   + L+   +  T+    F     L       L++        ID   F         
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQ-----LLELGSQYTPLTIDKEAF--------R 70

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPI--PSSLGNLSDLAVLAV 195
            L  L+   L  + +    P+       L  L L    LS  +       NL  L  L +
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 196 ASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA---SFNHFSGPI 251
           + NQ+    +  + G L+ L  +    N++  +     +  +    +    + N     +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 252 PTSLKSCSSLYR------------------VRLESNELTGDLEQDFGIYPNLTYIDLSYN 293
                 C + +R                      SN ++        +  ++      ++
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 294 RLQG-EVSPKWGKCQ-KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI 351
            ++  + +   G  +  +  L L+   +         +L  L VL+L+ N+++       
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 352 GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS 411
             L  L  L+L+ N +          L  +  +DL  N ++    +    L  L++L L 
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT-SLQSMNLSHNNLSG-EIP 469
            N L       I  +  + D + LS N L       L K+  +   ++LS N L   +I 
Sbjct: 371 DNALT-----TIHFIPSIPD-IFLSGNKLV-----TLPKINLTANLIHLSENRLENLDIL 419

Query: 470 ASLSSMLSLVAVNLSYNNLEGPLPDG 495
             L  +  L  + L+ N       D 
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQ 445

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (317), Expect = 6e-31
 Identities = 95/467 (20%), Positives = 157/467 (33%), Gaps = 70/467 (14%)

Query: 78  SVTEINLANTGLA-GTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
            + E+ L   GL+   L D  F +   L       LD+S+N +        F        
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKAL-----TRLDLSKNQIRSLYLHPSFG------- 145

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTL--LALDGNFLSGPIPSSLGNLSD----- 189
             L  LK+     N +      E+   +  TL   +L  N L   +    G   +     
Sbjct: 146 -KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 190 -LAVLAVASNQLSGEIPAN------------IGTLSKLTDLHLFINKLSGLPPQVCKGGK 236
            L +L V+ N  + +I  N            +     +       + +         G  
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 237 LINFTA---SFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYN 293
             +      S            ++   L  + L  N++    ++ F    NL  ++LSYN
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 294 RLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGN 353
            L    S  +    K+  + L  N I          L +L  LDL  N L+      I  
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHF 379

Query: 354 LTELSTLSLNGNDISG---------------------PIPEEIGALLNLDSLDLSMNRLS 392
           +  +  + L+GN +                        I   +  + +L  L L+ NR S
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 393 GPIPKQI-GELRDLRSLSLSQNNLNGTIPFQI--GNLVGLQDL--LDLSYNSLTGEIPAQ 447
                Q   E   L  L L +N L      ++      GL  L  L L++N L    P  
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 448 LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 494
              LT+L+ ++L+ N L+      L + L +  +++S N L  P PD
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPANLEI--LDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (269), Expect = 8e-25
 Identities = 75/415 (18%), Positives = 141/415 (33%), Gaps = 34/415 (8%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGL---KNFL--- 146
           +  +       L    +    ++ N++   +               L  L    N     
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 147 ---LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNL--SDLAVLAVASNQLS 201
                 N +S      +     +       + +  P  ++   L  S +  L ++   + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSS 260
                   TL  L  L+L  NK++ +  +   G   L     S+N       ++      
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 261 LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320
           +  + L+ N +    +Q F     L  +DL  N L             +  + L+GN + 
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

Query: 321 GKIPAEIGSLSQLVVLDLSSNQLSG-EIPAQIGNLTELSTLSLNGNDISGPIPEEI-GAL 378
             +P    + + +    LS N+L   +I   +  +  L  L LN N  S    ++     
Sbjct: 395 -TLPKINLTANLI---HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 379 LNLDSLDLSMNRLSGPIPKQIGE-----LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
            +L+ L L  N L      ++       L  L+ L L+ N LN   P    +L  L+  L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GL 509

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            L+ N LT      L    +L+ +++S N L    P       SL  +++++N  
Sbjct: 510 SLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
             +    + +LT ++P   + L + + + LS N +     +S   +  L  + L      
Sbjct: 6   GRIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 490 GPLPDGS 496
             +   +
Sbjct: 62  LTIDKEA 68

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (324), Expect = 2e-32
 Identities = 72/328 (21%), Positives = 120/328 (36%), Gaps = 34/328 (10%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
             LL L  N +         +   L  L +  N +S  +       L  L  L L  N+L
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL 92

Query: 225 SGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
             +P  V               F+G         S+L ++ +  N++   L+  F    N
Sbjct: 93  KLIPLGV---------------FTGL--------SNLTKLDISENKIVILLDYMFQDLYN 129

Query: 285 LTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQ 342
           L  +++  N L   +S +       L  L L   ++   IP E    L  L+VL L    
Sbjct: 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 343 LSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401
           ++  I       L  L  L ++       +       LNL SL ++   L+      +  
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 402 LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQSMNLS 460
           L  LR L+LS N ++      +  L+ LQ+ + L    L   +       L  L+ +N+S
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQE-IQLVGGQLA-VVEPYAFRGLNYLRVLNVS 304

Query: 461 HNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            N L+    +   S+ +L  + L  N L
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (288), Expect = 1e-27
 Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 12/292 (4%)

Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSL 261
            +P  I   ++   L L  N++  L          L     + N  S   P +  +  +L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIG 320
             + L SN L       F    NLT +D+S N++   +          L  L +  N + 
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 321 GKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGAL 378
             I       L+ L  L L    L+  IP +   +L  L  L L   +I+         L
Sbjct: 142 -YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYN 438
             L  L++S       +        +L SLS++  NL       + +LV L+ L +LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL-NLSYN 258

Query: 439 SLTGEIPAQ-LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
            ++  I    L +L  LQ + L    L+   P +   +  L  +N+S N L 
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 7e-26
 Identities = 57/273 (20%), Positives = 101/273 (36%), Gaps = 13/273 (4%)

Query: 222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQD-FG 280
            +   +P  +    +L++     N           S   L  + L  N ++  +E   F 
Sbjct: 21  KRFVAVPEGIPTETRLLDL--GKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFN 77

Query: 281 IYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDL 338
              NL  + L  NRL+  +          LT L ++ N I   +   +   L  L  L++
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV 135

Query: 339 SSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397
             N L   I  +    L  L  L+L   +++    E +  L  L  L L    ++     
Sbjct: 136 GDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQS 456
               L  L+ L +S      T+       + L  L  +++ +LT  +P   +  L  L+ 
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL-SITHCNLT-AVPYLAVRHLVYLRF 252

Query: 457 MNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           +NLS+N +S    + L  +L L  + L    L 
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 54/272 (19%), Positives = 98/272 (36%), Gaps = 24/272 (8%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  + L +  L   +    F+   NL      +LD+S N +   +   +F         
Sbjct: 81  NLRTLGLRSNRLK-LIPLGVFTGLSNLT-----KLDISENKIVI-LLDYMF--------Q 125

Query: 138 GLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
            L  LK+  + DN L   I          L  L L+   L+     +L +L  L VL + 
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 197 SNQLSGEIPANI-GTLSKLTDLHL-FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
              ++  I       L +L  L +     L  + P    G  L + + +  + +     +
Sbjct: 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLG 313
           ++    L  + L  N ++            L  I L   +L   V P  +     L +L 
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 314 LAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLS 344
           ++GN +   +   +  S+  L  L L SN L+
Sbjct: 303 VSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (319), Expect = 2e-31
 Identities = 73/372 (19%), Positives = 150/372 (40%), Gaps = 31/372 (8%)

Query: 97  DFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI 156
           ++    + L++D    DV  +         ++   ++  +     +     +++ +  ++
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDM----QTQDVYFGFEDITLNNQKIVT---FKNSTMR-KL 66

Query: 157 PEEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKL 214
           P  +  + + + LL L+   +      +      +  L +  N +   +P ++   +  L
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL 125

Query: 215 TDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG 273
           T L L  N LS LP  +     KL   + S N+       + ++ +SL  ++L SN LT 
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT- 184

Query: 274 DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQL 333
               D  + P+L + ++SYN L             +  L  + NSI   +        +L
Sbjct: 185 --HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG--PVNVEL 234

Query: 334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG 393
            +L L  N L+ +    + N   L  + L+ N++   +      +  L+ L +S NRL  
Sbjct: 235 TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 394 PIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS 453
            +      +  L+ L LS N+L   +         L++ L L +NS+   +        +
Sbjct: 293 -LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN-LYLDHNSIV-TLKLST--HHT 346

Query: 454 LQSMNLSHNNLS 465
           L+++ LSHN+  
Sbjct: 347 LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (300), Expect = 5e-29
 Identities = 59/315 (18%), Positives = 121/315 (38%), Gaps = 24/315 (7%)

Query: 180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLI 238
           I S+L        + +              TL+    +    + +  LP  +     ++ 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE 298
               +          +     ++ ++ +  N +       F   P LT + L  N L   
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 137

Query: 299 VSPK-WGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQIGNLTE 356
           +    +    KLT L ++ N++  +I  +   + + L  L LSSN+L+  +   +  +  
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 193

Query: 357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
           L   +++ N +S      +   + ++ LD S N ++  +   +    +L  L L  NNL 
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLT 245

Query: 417 GTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSS 474
                    L+    L  +DLSYN L   +     K+  L+ + +S+N L   +      
Sbjct: 246 -----DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 475 MLSLVAVNLSYNNLE 489
           + +L  ++LS+N+L 
Sbjct: 300 IPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 58/407 (14%), Positives = 126/407 (30%), Gaps = 50/407 (12%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
           L  +D S  P+L     +  +VS N ++               +   + ++      N +
Sbjct: 183 LTHVDLSLIPSL-----FHANVSYNLLST--------------LAIPIAVEELDASHNSI 223

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTL 211
           +  +   +     LT+L L  N L+    + L N   L  + ++ N+L  +I  +    +
Sbjct: 224 N-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKM 277

Query: 212 SKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNEL 271
            +L  L++  N+L  L         L     S NH    +  +      L  + L+ N +
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336

Query: 272 TGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIG--- 328
                     +  L  + LS+N             + +    +       KI  ++    
Sbjct: 337 V---TLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 391

Query: 329 -------SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
                       ++  ++   +  ++    G  +   T++   +       +    L   
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT 441
           + L+  +N L         E++ L +  + Q  L   +  +I   +    L        +
Sbjct: 452 EQLEAEVNELR-------AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSS 504

Query: 442 GEIPAQLEKLTSLQSMNLS-HNNLSGEIPASLSSMLSLVAVNLSYNN 487
             +      L   Q+  L        E  A       L   N++   
Sbjct: 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.9 bits (163), Expect = 6e-12
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 5/154 (3%)

Query: 338 LSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397
                    I + +        + ++          E   L N   +    + +      
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQS 456
            +   R +  L+L+   +     +       +Q  L + +N++   +P    + +  L  
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK-LYMGFNAIR-YLPPHVFQNVPLLTV 127

Query: 457 MNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNLE 489
           + L  N+LS  +P  +  +   L  +++S NNLE
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 1e-25
 Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 45/319 (14%)

Query: 155 RIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT-LSK 213
           ++P+++       LL L  N ++        NL +L  L + +N++S +I       L K
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVK 101

Query: 214 LTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG 273
           L  L+L  N+L  LP ++                    P +L+       +R+  NE+T 
Sbjct: 102 LERLYLSKNQLKELPEKM--------------------PKTLQE------LRVHENEITK 135

Query: 274 DLEQDFGIYPNLTYIDLSYNRLQ-GEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEIGSLS 331
             +  F     +  ++L  N L+   +        +KL+ + +A  +I   IP   G   
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPP 192

Query: 332 QLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR 390
            L  L L  N+++ ++ A     L  L+ L L+ N IS      +    +L  L L+ N+
Sbjct: 193 SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 391 LSGPIPKQIGELRDLRSLSLSQNNL---NGTIPFQIGNLVGLQDL--LDLSYNSLT-GEI 444
           L   +P  + + + ++ + L  NN+           G          + L  N +   EI
Sbjct: 252 LVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 445 PAQL-EKLTSLQSMNLSHN 462
                  +    ++ L + 
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 1e-23
 Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 18/237 (7%)

Query: 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGLAGN 317
                + L++N++T   + DF    NL  + L  N++  ++SP  +    KL  L L+ N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDI-SGPIPEEI 375
            +  ++P        L  L +  N+++ ++   +   L ++  + L  N + S  I    
Sbjct: 111 QL-KELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 376 -GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-- 432
              +  L  + ++   ++  IP+ +     L  L L  N +   +     +L GL +L  
Sbjct: 167 FQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKIT-KVDA--ASLKGLNNLAK 220

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           L LS+NS++      L     L+ ++L++N L  ++P  L+    +  V L  NN+ 
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 17/216 (7%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEIGS-LSQLVVLD 337
            + P+   +DL  N++  E+        + L  L L  N I  KI     + L +L  L 
Sbjct: 49  DLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 106

Query: 338 LSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRL-SGPI 395
           LS NQL  E+P        L  L ++ N+I+  + + +   L  +  ++L  N L S  I
Sbjct: 107 LSKNQLK-ELPE--KMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 396 PKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTS 453
                  ++ L  + ++  N+  TIP   G    L +L  L  N +T ++ A  L+ L +
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTEL-HLDGNKIT-KVDAASLKGLNN 217

Query: 454 LQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           L  + LS N++S     SL++   L  ++L+ N L 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 39/200 (19%)

Query: 98  FSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIP 157
           F     L       + ++  N+T  I   L P            L    L  N ++ ++ 
Sbjct: 167 FQGMKKLS-----YIRIADTNITT-IPQGLPP-----------SLTELHLDGNKIT-KVD 208

Query: 158 EEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTD 216
                    L  L L  N +S     SL N   L  L + +N+L  ++P  +     +  
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT-GDL 275
           ++L  N +S +                F       P      +S   V L SN +   ++
Sbjct: 268 VYLHNNNISAIGSN------------DFCP-----PGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 276 EQD-FGIYPNLTYIDLSYNR 294
           +   F        + L   +
Sbjct: 311 QPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNN 463
            LR +  S   L   +P  +        LLDL  N +T       + L +L ++ L +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 464 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG 495
           +S   P + + ++ L  + LS N L+  LP+ 
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKE-LPEK 118

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 1e-24
 Identities = 67/319 (21%), Positives = 111/319 (34%), Gaps = 46/319 (14%)

Query: 155 RIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSK 213
            +P+EI      TLL L  N +S         L  L  L + +N++S +I       L K
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103

Query: 214 LTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG 273
           L  L++  N L  +PP                     +P+SL        +R+  N +  
Sbjct: 104 LQKLYISKNHLVEIPP--------------------NLPSSLV------ELRIHDNRIRK 137

Query: 274 DLEQDFGIYPNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQ 332
             +  F    N+  I++  N L+     P      KL  L ++   +   IP        
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPK--DLPET 194

Query: 333 LVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNR 390
           L  L L  N++   I  +     ++L  L L  N I   I       L  L  L L  N+
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNK 252

Query: 391 LSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG------EI 444
           LS  +P  + +L+ L+ + L  NN+          +         +  SL        E+
Sbjct: 253 LSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 445 PAQL-EKLTSLQSMNLSHN 462
                  +T   ++   + 
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 61/297 (20%), Positives = 107/297 (36%), Gaps = 46/297 (15%)

Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLY 262
            +P  I      T L L  N +S L                            K    LY
Sbjct: 47  AVPKEISP--DTTLLDLQNNDISELRK-----------------------DDFKGLQHLY 81

Query: 263 RVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK 322
            + L +N+++   E+ F     L  + +S N L  E+ P       L  L +  N I  K
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-K 137

Query: 323 IPAEI-GSLSQLVVLDLSSNQL-SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380
           +P  +   L  +  +++  N L +        +  +L+ L ++   ++G IP+       
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPET 194

Query: 381 LDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS 439
           L+ L L  N++   I  +       L  L L  N +       +  L  L++L  L  N 
Sbjct: 195 LNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL-HLDNNK 252

Query: 440 LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS-------LSSMLSLVAVNLSYNNLE 489
           L+  +PA L  L  LQ + L  NN++ ++  +                ++L  N + 
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 54/323 (16%), Positives = 108/323 (33%), Gaps = 50/323 (15%)

Query: 57  SSNSTTPSPCRWSG--IVCNDAG----------SVTEINLANTGLAGTLHDLDFSSFPNL 104
           + ++  P  C      + C+D G            T ++L N  ++  L   DF    +L
Sbjct: 22  TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHL 80

Query: 105 LRFDVYELDVSRNNMTGGIDPRLFPD---------DKNQ----PMTGLLGLKNFLLQDNM 151
                Y L +  N ++  I  + F            KN     P      L    + DN 
Sbjct: 81  -----YALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR 134

Query: 152 LSGRIPEEI-GNCKLLTLLALDGNFL-SGPIPSSLGNLSDLAVLAVASNQLSGEIPANIG 209
           +  ++P+ +    + +  + + GN L +        +   L  L ++  +L+  IP    
Sbjct: 135 IR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--D 190

Query: 210 TLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSLYRVRLES 268
               L +LHL  NK+  +  +      KL       N        SL    +L  + L++
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 269 NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-------WGKCQKLTLLGLAGNSIG- 320
           N+L+  +         L  + L  N +  +V            K      + L  N +  
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 321 GKIPAEI-GSLSQLVVLDLSSNQ 342
            ++       ++  + +   + +
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 4e-24
 Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 12/217 (5%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK--IPAEIGSLSQLVVLD 337
           GI  + T ++L  N+LQ      + K  +LT L L+ N +  K          + L  LD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 338 LSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIP 396
           LS N +   + +    L +L  L    +++       +  +L NL  LD+S         
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AF 142

Query: 397 KQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQ-LEKLT 452
             I   L  L  L ++ N+              L++L  LDLS   L  ++       L+
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199

Query: 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           SLQ +N+SHNN           + SL  ++ S N++ 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (250), Expect = 1e-23
 Identities = 71/275 (25%), Positives = 107/275 (38%), Gaps = 35/275 (12%)

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
           S  L+  +P  I   S  T L L  NKL  LP                            
Sbjct: 16  SKGLT-SVPTGI--PSSATRLELESNKLQSLPH-----------------------GVFD 49

Query: 257 SCSSLYRVRLESNELT--GDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
             + L ++ L SN L+  G   Q      +L Y+DLS+N +   +S  +   ++L  L  
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 315 AGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIP 372
             +++       +  SL  L+ LD+S           I   L+ L  L + GN       
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 373 EEI-GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD 431
            +I   L NL  LDLS  +L    P     L  L+ L++S NN      F    L  LQ 
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ- 226

Query: 432 LLDLSYNSLTGEIPAQLEKL-TSLQSMNLSHNNLS 465
           +LD S N +      +L+   +SL  +NL+ N+ +
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 55/283 (19%), Positives = 94/283 (33%), Gaps = 42/283 (14%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
            +    +S P  +      L++  N +   +   +F          L  L    L  N L
Sbjct: 14  CNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVF--------DKLTQLTKLSLSSNGL 64

Query: 153 SGRIPEEIGNCKL--LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-G 209
           S +      +     L  L L  N +   + S+   L  L  L    + L      ++  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269
           +L  L  L +           +  G                        SSL  +++  N
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNG-----------------------LSSLEVLKMAGN 160

Query: 270 ELTGDLEQD-FGIYPNLTYIDLSYNRLQGEVSPKWGKC-QKLTLLGLAGNSIGGKIPAEI 327
               +   D F    NLT++DLS  +L+ ++SP        L +L ++ N+         
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 328 GSLSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLNGNDIS 368
             L+ L VLD S N +      Q      + L+ L+L  ND +
Sbjct: 220 KCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS--G 393
           +  +S  L+  +P  I   +  + L L  N +          L  L  L LS N LS  G
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 394 PIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ--LEKL 451
              +       L+ L LS N +  T+      L  L+ L D  +++L  ++        L
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL-DFQHSNLK-QMSEFSVFLSL 125

Query: 452 TSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 496
            +L  +++SH +         + + SL  + ++ N+ +       
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            +  ++  ++ L        F S  NL+      LD+S  +        +F         
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIY-----LDISHTHTRV-AFNGIF--------N 147

Query: 138 GLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
           GL  L+   +  N        +I    + LT L L    L    P++  +LS L VL ++
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 197 SNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQV 231
            N     +       L+ L  L   +N +     Q 
Sbjct: 208 HNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (258), Expect = 8e-24
 Identities = 79/420 (18%), Positives = 145/420 (34%), Gaps = 44/420 (10%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
           L  +      NL       LD+S N        + F          +  LK   L    L
Sbjct: 81  LVKISCHPTVNLK-----HLDLSFNAFDALPICKEF--------GNMSQLKFLGLSTTHL 127

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
                  I +  +  +L + G             L D    ++     + +    I  +S
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 213 KLTDLHLFINKLSGLP------------PQVCKGGKLINFTASFNHFSGPIPTSL---KS 257
             T  +L ++ +  +              ++    KL N T +    +      +     
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 258 CSSLYRVRLESNELTGDLEQDFGIYPN-----LTYIDLSYNRLQGEVSPKWGKCQKLTLL 312
            ++++   + + +L G L+     Y       L+   +  +      S  +     + + 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372
               +            +S  + LD S+N L+  +    G+LTEL TL L  N +   + 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LS 364

Query: 373 EEIGA---LLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVG 428
           +       + +L  LD+S N +S    K      + L SL++S N L  TI   +     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 429 LQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
           ++ +LDL  N +   IP Q+ KL +LQ +N++ N L          + SL  + L  N  
Sbjct: 423 IK-VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 2e-20
 Identities = 73/411 (17%), Positives = 144/411 (35%), Gaps = 45/411 (10%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
           ++  ++L+           +F +   L       L +S  ++               P+ 
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQL-----KFLGLSTTHLEKS---------SVLPIA 136

Query: 138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
            L   K  L+          E+    +     +L   F +      + ++S   V  +  
Sbjct: 137 HLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 198 NQLSG-----------EIPANIGTLSKLTDLHLFINKLSGL----PPQVCKGGKLINFTA 242
           + +              I A + T  KL++L L   + +        Q+     +  F+ 
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 243 SFNHFSGPI-----PTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297
           S     G +       S  S  +L   ++ S+         + I+ N+   + + +  + 
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 298 EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIG---NL 354
                  K      L  + N +   +    G L++L  L L  NQL  E+         +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM 373

Query: 355 TELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQN 413
             L  L ++ N +S    +       +L SL++S N L+  I + +     ++ L L  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 414 NLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
            +  +IP Q+  L  LQ+ L+++ N L        ++LTSLQ + L  N  
Sbjct: 432 KIK-SIPKQVVKLEALQE-LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.7 bits (212), Expect = 5e-18
 Identities = 75/424 (17%), Positives = 137/424 (32%), Gaps = 35/424 (8%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
                    P  L      L++S+N ++  +               L  L+  ++  N +
Sbjct: 7   RSKNGLIHVPKDLSQKTTILNISQNYISE-LWTSDI--------LSLSKLRILIISHNRI 57

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQL-SGEIPANIGTL 211
                      + L  L L  N L   I        +L  L ++ N   +  I    G +
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 212 SKLTDLHLFINKLSGLPPQVCKGGKLINFTASF--NHFSGPIPTSLKSC--SSLYRVRLE 267
           S+L  L L    L            +          +     P  L+     SL+ V   
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS------PKWGKCQKLTLLGLAGNSIGG 321
           + E    L+       NL   ++       + S       K     KL+ L L       
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 322 KIPAEIGSL---SQLVVLDLSSNQLSGEIPAQIG-----NLTELSTLSLNGNDISGPIPE 373
                I  L   + +    +S+ +L G++  +       +L  LS   +  +    P   
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
                 N++  + +++           ++     L  S N L  T+    G+L  L+  L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-TL 353

Query: 434 DLSYNSLT--GEIPAQLEKLTSLQSMNLSHNNL-SGEIPASLSSMLSLVAVNLSYNNLEG 490
            L  N L    +I     ++ SLQ +++S N++   E     S   SL+++N+S N L  
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 491 PLPD 494
            +  
Sbjct: 414 TIFR 417

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
            +P ++   +   +L++S N +S    + I +L++L  L ++ N I             L
Sbjct: 14  HVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ--IGNLVGLQDLLDLSYNS 439
           + LDLS N+L   I        +L+ L LS N  +  +P     GN+  L+  L LS   
Sbjct: 72  EYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKF-LGLSTTH 126

Query: 440 LTGEIPAQLEKLTSLQ-SMNLSHNNLSGEIPASLSS-MLSLVAVNLSYNNLEGPLPDGS 496
           L       +  L   +  + L       E P  L       + +    N     + D S
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 16/207 (7%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
                   +      ++    VS   M       L P         +    +    +N+L
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMV----HMLCPS-------KISPFLHLDFSNNLL 336

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLS--GPIPSSLGNLSDLAVLAVASNQLSGEIPANI-G 209
           +  + E  G+   L  L L  N L     I      +  L  L ++ N +S +       
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269
               L  L++  N L+    + C   ++       N     IP  +    +L  + + SN
Sbjct: 397 WTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASN 454

Query: 270 ELTGDLEQDFGIYPNLTYIDLSYNRLQ 296
           +L    +  F    +L  I L  N   
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 5e-23
 Identities = 61/354 (17%), Positives = 122/354 (34%), Gaps = 39/354 (11%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
            +  L GL   +   N ++     ++     LT LA D N L+      +  L+ L  L 
Sbjct: 59  GIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLN 112

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
             +N+L+     ++     LT L+   N L+ +        +L       N     +   
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLTEIDVSHNT--QLTELDCHLNKKITKLD-- 165

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           +   + L  +    N++T     D      L  ++   N +         +  +LT L  
Sbjct: 166 VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDC 219

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
           + N +      ++  L+QL   D S N L+ E+   +  L++L+TL     D+      +
Sbjct: 220 SSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---ID 270

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           +     L        R    +   +     L  L      +   +         L   L 
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDL--SQNPKLVY-LY 324

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
           L+   LT E+   +   T L+S++  + ++  +   S+  + +L     +    
Sbjct: 325 LNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 6e-23
 Identities = 73/414 (17%), Positives = 145/414 (35%), Gaps = 58/414 (14%)

Query: 78  SVTEINLANTGLAGTLHDLD-FSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
           ++T ++  N+ +     D+        L      +L  + NN+T               +
Sbjct: 43  TLTSLDCHNSSIT----DMTGIEKLTGLT-----KLICTSNNIT------------TLDL 81

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVA 196
           +    L       N L+  +   +     LT L  D N L+      +     L  L  A
Sbjct: 82  SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCA 135

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
            N L+ EI   +   ++LT+L   +NK       V    +L     SFN  +      + 
Sbjct: 136 RNTLT-EID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITE---LDVS 188

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG 316
               L R+  ++N +T   + D      LT++D S N+L            +LT    + 
Sbjct: 189 QNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSV 242

Query: 317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376
           N +  ++   + +LS+L  L      L  EI   + + T+L      G      +  ++ 
Sbjct: 243 NPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVT 294

Query: 377 ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
               L  LD     ++  +   + +   L  L L+   L   +   + +   L+ L    
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSL-SCV 347

Query: 437 YNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
              +  +  + + K+ +L +   +          +L++    +AV+    +  G
Sbjct: 348 NAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 64/328 (19%), Positives = 114/328 (34%), Gaps = 36/328 (10%)

Query: 162 NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI 221
           N       A +          S   L+ L  L   ++ ++ ++   I  L+ LT L    
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTS 73

Query: 222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGI 281
           N ++ L         L       N  +      +   + L  +  ++N+LT   + D   
Sbjct: 74  NNITTLDLSQNT--NLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341
            P LTY++ + N L            +LT L    N        ++   +QL  LD S N
Sbjct: 126 NPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFN 180

Query: 342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401
           +++ E+   +     L+ L+ + N+I+     ++   + L  LD S N+L+  I   +  
Sbjct: 181 KIT-ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP 231

Query: 402 LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461
           L  L     S N L   +   +  L  L  L       L  EI   L   T L       
Sbjct: 232 LTQLTYFDCSVNPLT-ELD--VSTLSKLTTL-HCIQTDLL-EID--LTHNTQLIYFQAEG 284

Query: 462 NNLSGEIPASLSSMLSLVAVNLSYNNLE 489
                E+   ++    L  ++     + 
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 60/302 (19%), Positives = 113/302 (37%), Gaps = 52/302 (17%)

Query: 188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF 247
            + A    A+ ++      +   L+ LT L    + ++ +                    
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG------------------ 59

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ 307
                  ++  + L ++   SN +T     D     NLTY+    N+L    +       
Sbjct: 60  -------IEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLT---NLDVTPLT 106

Query: 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDI 367
           KLT L    N +      ++     L  L+ + N L+ EI   + + T+L+ L  + N  
Sbjct: 107 KLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK 160

Query: 368 SGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLV 427
              +   +     L +LD S N+++  +   + + + L  L+   NN+   +       +
Sbjct: 161 ITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT-KLDL--NQNI 212

Query: 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
            L  L D S N LT EI   +  LT L   + S N L+    ++LS + +L   +    +
Sbjct: 213 QLTFL-DCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTD 265

Query: 488 LE 489
           L 
Sbjct: 266 LL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 61/371 (16%), Positives = 120/371 (32%), Gaps = 67/371 (18%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
           L +LD +    L       L+   N +T               ++    L       N L
Sbjct: 97  LTNLDVTPLTKLT-----YLNCDTNKLT------------KLDVSQNPLLTYLNCARNTL 139

Query: 153 SGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS 212
           +     ++ +   LT L    N     +   +   + L  L  + N+++     ++    
Sbjct: 140 T---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNK 191

Query: 213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELT 272
            L  L+   N ++ L        +L     S N  +      +   + L       N LT
Sbjct: 192 LLNRLNCDTNNITKLDLNQNI--QLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT 246

Query: 273 GDLEQDFGIYPNLTYIDLSYNRL-------------------QGEVSPKWGKCQKLTLLG 313
              E D      LT +      L                   +           +L LL 
Sbjct: 247 ---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
                I      ++    +LV L L++ +L+ E+   + + T+L +LS     I      
Sbjct: 304 CQAAGI---TELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FSS 356

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
            +G +  L++   +  +    +PK+      L ++++S + L+     Q GN + ++   
Sbjct: 357 -VGKIPALNNNFEAEGQTIT-MPKETLTNNSL-TIAVSPDLLD-----QFGNPMNIEPGD 408

Query: 434 DLSYNSLTGEI 444
              Y+  T  I
Sbjct: 409 GGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 61/318 (19%), Positives = 103/318 (32%), Gaps = 39/318 (12%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPD------DKNQ----PMTGLLGL 142
           L ++D S    L      ELD   N     +D              N+     ++    L
Sbjct: 139 LTEIDVSHNTQL-----TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLL 193

Query: 143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG 202
                  N ++ ++   +     LT L    N L+      +  L+ L     + N L+ 
Sbjct: 194 NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT- 246

Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLY 262
           E+   + TLSKLT LH     L  +   +    +LI F A        +   +   + LY
Sbjct: 247 ELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLY 300

Query: 263 RVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK 322
            +  ++  +T   E D    P L Y+ L+   L            KL  L      I   
Sbjct: 301 LLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAHIQ-D 353

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG---PIPEEIGALL 379
               +G +  L     +  Q        + N +    +S +  D  G    I    G + 
Sbjct: 354 FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVY 412

Query: 380 NLDSLDLSMNRLSGPIPK 397
           +  +  ++   LS   P 
Sbjct: 413 DQATNTITWENLSTDNPA 430

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 8e-23
 Identities = 86/423 (20%), Positives = 144/423 (34%), Gaps = 58/423 (13%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            V  ++L+   +A  L++  FS   +L       L V +      I    F         
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQ-----FLKVEQQTPGLVIRNNTF--------R 76

Query: 138 GLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLALDGNFL-SGPIPS-SLGNLSDLAVLA 194
           GL  L    L  N    ++          L +L L    L    +       L+ L +L 
Sbjct: 77  GLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 195 VASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT 253
           +  N +    PA+    + +   L L  NK+  +  +               +F G   T
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED------------LLNFQGKHFT 183

Query: 254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLG 313
            L+  S +    +    L  +   +     ++T +DLS N  +   S        +    
Sbjct: 184 LLRLSS-ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK--ESMAKRFFDAIAGT- 239

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNL--TELSTLSLNGNDISGPI 371
                   KI + I S S  +                   L  + + T  L+ + I   +
Sbjct: 240 --------KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-L 290

Query: 372 PEEI-GALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIP---FQIGNL 426
            + +     +L+ L L+ N ++  I       L  L  L+LSQN L G+I    F+  NL
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFE--NL 346

Query: 427 VGLQDLLDLSYNSLTGEIPAQL-EKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSY 485
             L+ L DLSYN +   +  Q    L +L+ + L  N L          + SL  + L  
Sbjct: 347 DKLEVL-DLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

Query: 486 NNL 488
           N  
Sbjct: 405 NPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 68/353 (19%), Positives = 117/353 (33%), Gaps = 40/353 (11%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
           +  + L  N ++    +S   L DL  L V        I  N    LS L  L L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 225 SGLPPQVCKG-GKLINFTASFNHFSGPI--PTSLKSCSSLYRVRLESNELTG-DLEQDFG 280
             L      G   L   T +  +  G +      K  +SL  + L  N +        F 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS 340
                  +DL++N+++          Q      L               LS + + D++ 
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQDMNE 197

Query: 341 NQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSL-------------DLS 387
             L  E        T ++TL L+GN     + +     +    +                
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 388 MNRLSGPIPKQIGELR--DLRSLSLSQNNLNGTIPFQI-GNLVGLQDLLDLSYNSLTGEI 444
                 P       L    +++  LS++ +   +   +  +   L+ L  L+ N +  +I
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL-TLAQNEIN-KI 314

Query: 445 PAQ-LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 496
                  LT L  +NLS N L         ++  L  ++LSYN++   L D S
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA-LLNLDSLDLSMN 389
           + +  +DLS N ++         L +L  L +        I       L +L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 390 RLSGPIPKQI-GELRDLRSLSLSQNNLNGTI----PFQIGNLVGLQDLLDLSYNSLTGEI 444
           +    +       L +L  L+L+Q NL+G +     F+   L  L+  L L  N++    
Sbjct: 90  QFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK--PLTSLEM-LVLRDNNIKKIQ 145

Query: 445 PAQL-EKLTSLQSMNLSHNNLSGEIPASLSSM--LSLVAVNLSYNNL 488
           PA     +     ++L+ N +       L +        + LS   L
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP---FQIGNLVGLQDLLDLS 436
           +++ +DLS+N ++         L+DL+ L + Q      I    F+   L  L   L L 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--GLSSLII-LKLD 87

Query: 437 YNSLTGEIPAQ-LEKLTSLQSMNLSHNNL-SGEIPA-SLSSMLSLVAVNLSYNNLEGPLP 493
           YN    ++       L +L+ + L+  NL    +       + SL  + L  NN++   P
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 494 DG 495
             
Sbjct: 147 AS 148

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 3e-22
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 16/239 (6%)

Query: 257 SCSS-LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGL 314
           SCS+   +V      L+ ++ Q  GI  N  Y++L  N +Q  +          L +L L
Sbjct: 51  SCSNQFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQL 106

Query: 315 AGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIP 372
             NSI  +I       L+ L  L+L  N L+  IP+     L++L  L L  N I   IP
Sbjct: 107 GRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IP 163

Query: 373 EEI-GALLNLDSLDLS-MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430
                 + +L  LDL  + +L          L +L+ L+L   N+   +P  +  LVGL+
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLE 221

Query: 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           +L ++S N      P     L+SL+ + + ++ +S     +   + SLV +NL++NNL 
Sbjct: 222 EL-EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 12/235 (5%)

Query: 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGLAGN 317
           S+   + L  N +       F    +L  + L  N ++ ++    +     L  L L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 318 SIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSL-NGNDISGPIPEE 374
            +   IP+     LS+L  L L +N +   IP+     +  L  L L     +   I E 
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY-ISEG 190

Query: 375 IGA-LLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
               L NL  L+L M  +   +P  +  L  L  L +S N+     P     L  L+ L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL- 247

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            +  + ++       + L SL  +NL+HNNLS       + +  LV ++L +N  
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 12/225 (5%)

Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
           L +N +     +   +   L +L L  N +      +   L+ L  L +  N L+  IP+
Sbjct: 82  LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPS 140

Query: 207 NI-GTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFT-ASFNHFSGPIPTSLKSCSSLYR 263
                LSKL +L L  N +  +P         L+                + +   +L  
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 264 VRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGK 322
           + L    +      +      L  +++S N    E+ P        L  L +  + +   
Sbjct: 201 LNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV-SL 256

Query: 323 IPAE-IGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGN 365
           I       L+ LV L+L+ N LS  +P  +   L  L  L L+ N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 16/239 (6%)

Query: 257 SCSS-LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGL 314
           SCS+   +V      L  ++    GI  N   ++L  N++Q  +        + L +L L
Sbjct: 40  SCSNQFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQL 95

Query: 315 AGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIP 372
           + N I   I       L+ L  L+L  N+L+  IP      L++L  L L  N I   IP
Sbjct: 96  SRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-IP 152

Query: 373 EEI-GALLNLDSLDLS-MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430
                 + +L  LDL  + RLS         L +LR L+L+  NL   IP  +  L+ L 
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210

Query: 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           +L DLS N L+   P   + L  LQ + +  + +      +  ++ SLV +NL++NNL 
Sbjct: 211 EL-DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 12/235 (5%)

Query: 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGN 317
           ++   + L  N++       F    +L  + LS N ++  +          L  L L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 318 SIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSL-NGNDISGPIPEE 374
            +   IP      LS+L  L L +N +   IP+     +  L  L L     +S  I E 
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY-ISEG 179

Query: 375 I-GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
               L NL  L+L+M  L   IP  +  L  L  L LS N+L+   P     L+ LQ L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL- 236

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            +  + +        + L SL  +NL+HNNL+       + +  L  ++L +N  
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 61/255 (23%), Positives = 91/255 (35%), Gaps = 32/255 (12%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
             LL L  N +     +S  +L  L +L ++ N +   I       L+ L  L LF N+L
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRL 124

Query: 225 SGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
           + +P                  F           S L  + L +N +       F   P+
Sbjct: 125 TTIPNGA---------------FVYL--------SKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 285 LTYIDLS-YNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ 342
           L  +DL    RL   +S         L  L LA  ++  +IP  +  L +L  LDLS N 
Sbjct: 162 LRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNH 218

Query: 343 LSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401
           LS  I       L  L  L +  + I          L +L  ++L+ N L+         
Sbjct: 219 LS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 402 LRDLRSLSLSQNNLN 416
           L  L  + L  N  N
Sbjct: 278 LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN 462
                +   + NL   +P  I      + LL+L  N +        + L  L+ + LS N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTR-LLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 463 NLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 496
           ++      + + + +L  + L  N L   +P+G+
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGA 131

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 4e-21
 Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 14/213 (6%)

Query: 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGN 317
           ++  R+ L  N ++      F    NLT + L  N L   +          L  L L+ N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 318 SIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI 375
           +    +       L +L  L L    L  E+   +   L  L  L L  N +   +P++ 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDT 148

Query: 376 -GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-- 432
              L NL  L L  NR+S    +    L  L  L L QN +   +         L  L  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVH--PHAFRDLGRLMT 205

Query: 433 LDLSYNSLTGEIPAQ-LEKLTSLQSMNLSHNNL 464
           L L  N+L+  +P + L  L +LQ + L+ N  
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 55/213 (25%), Positives = 82/213 (38%), Gaps = 8/213 (3%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDL 338
           GI      I L  NR+    +  +  C+ LT+L L  N +  +I A     L+ L  LDL
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 339 SSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIP 396
           S N     +       L  L TL L+   +   +   +   L  L  L L  N L   +P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQA-LP 145

Query: 397 KQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQ 455
                +L +L  L L  N ++         L  L  L  L  N +    P     L  L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLM 204

Query: 456 SMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
           ++ L  NNLS     +L+ + +L  + L+ N  
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 46/185 (24%), Positives = 67/185 (36%), Gaps = 8/185 (4%)

Query: 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDI 367
              + L GN I     A   +   L +L L SN L+  I A     L  L  L L+ N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 368 SGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQI-G 424
              +       L  L +L L    L   +   +   L  L+ L L  N L   +P     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 425 NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484
           +L  L  L  L  N ++         L SL  + L  N ++   P +   +  L+ + L 
Sbjct: 151 DLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 485 YNNLE 489
            NNL 
Sbjct: 210 ANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 55/244 (22%), Positives = 87/244 (35%), Gaps = 38/244 (15%)

Query: 180 IPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQVCKGGKLI 238
           +P  +   +    + +  N++S  +PA        LT L L  N L+ +           
Sbjct: 26  VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA------- 75

Query: 239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQD-FGIYPNLTYIDLSYNRLQG 297
                   F+G     L     L    L  N     ++   F     L  + L    LQ 
Sbjct: 76  --------FTG-----LALLEQLD---LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118

Query: 298 EVSPKW-GKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNL 354
           E+ P        L  L L  N++   +P +    L  L  L L  N++S  +P +    L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 176

Query: 355 TELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQ 412
             L  L L+ N ++  +       L  L +L L  N LS  +P +    LR L+ L L+ 
Sbjct: 177 HSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND 234

Query: 413 NNLN 416
           N   
Sbjct: 235 NPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 8/169 (4%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLD 382
           +P  I   +    + L  N++S    A       L+ L L+ N ++         L  L+
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 383 SLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQI-GNLVGLQDLLDLSYNSL 440
            LDLS N     +       L  L +L L +  L   +   +   L  LQ  L L  N+L
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY-LYLQDNAL 141

Query: 441 TGEIPAQ-LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
              +P      L +L  + L  N +S     +   + SL  + L  N +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 30/229 (13%)

Query: 141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQL 200
             +   L  N +S         C+ LT+L L  N L+    ++   L+ L  L ++ N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 201 SGEIPANI-GTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCS 259
              +       L +L  LHL    L  L P +               F G         +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGL---------------FRG--------LA 129

Query: 260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNS 318
           +L  + L+ N L    +  F    NLT++ L  NR+   V  +       L  L L  N 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR 188

Query: 319 IGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGN 365
           +   +       L +L+ L L +N LS  +P +    L  L  L LN N
Sbjct: 189 V-AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.5 bits (230), Expect = 1e-20
 Identities = 59/302 (19%), Positives = 113/302 (37%), Gaps = 38/302 (12%)

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
           S  L+  IP+ +     +  L L  N+++ +                           L+
Sbjct: 40  SGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSD-----------------------LQ 73

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLA 315
            C +L  + L SN +    E  F    +L ++DLSYN L   +S  W      LT L L 
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132

Query: 316 GNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPE 373
           GN         +   L++L +L + +     +I  +    LT L  L ++ +D+    P+
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI-----GNLVG 428
            + ++ N+  L L M +    +   +     +  L L   +L+     ++      +L+ 
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 429 LQDL--LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
                 + ++  SL  ++   L +++ L  +  S N L          + SL  + L  N
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 487 NL 488
             
Sbjct: 312 PW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 47/249 (18%), Positives = 96/249 (38%), Gaps = 17/249 (6%)

Query: 259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGN 317
            ++  + L +N +T     D     NL  + L+ N +   +          L  L L+ N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 318 SIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI 375
            +   + +     LS L  L+L  N         +  +LT+L  L +   D    I  + 
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 376 -GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
              L  L+ L++  + L    PK +  ++++  L L        +   +     ++  L+
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE-CLE 228

Query: 435 LSYNSLTG----EIPA----QLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
           L    L      E+       L K  + +++ ++  +L  ++   L+ +  L+ +  S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 487 NLEGPLPDG 495
            L+  +PDG
Sbjct: 288 QLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 49/265 (18%), Positives = 92/265 (34%), Gaps = 18/265 (6%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
           +  L L  N ++    S L    +L  L + SN ++  I  +   +L  L  L L  N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 225 SGLPPQVCKG-GKLINFTASFNHFSGPIPTSL-KSCSSLYRVRLESNELTGDLE-QDFGI 281
           S L     K    L       N +     TSL    + L  +R+ + +    ++ +DF  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSS 340
              L  +++  + LQ          Q ++ L L        +        S +  L+L  
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231

Query: 341 NQLSGEIPAQI--------GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS 392
             L     +++                + +    +   + + +  +  L  L+ S N+L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 393 GPIPKQI-GELRDLRSLSLSQNNLN 416
             +P  I   L  L+ + L  N  +
Sbjct: 291 S-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 39/231 (16%), Positives = 70/231 (30%), Gaps = 27/231 (11%)

Query: 77  GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPM 136
           GS+  ++L+   L+  L    F    +L       L++  N      +  LF        
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLT-----FLNLLGNPYKTLGETSLF-------- 145

Query: 137 TGLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
           + L  L+   + +     +I  +       L  L +D + L    P SL ++ +++ L +
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 196 ASNQLSGEIPANI-GTLSKLTDLHLFINKLSGLPPQV---------CKGGKLINFTASFN 245
              Q    +        S +  L L    L                 K     N   +  
Sbjct: 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 246 HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ 296
                +   L   S L  +    N+L    +  F    +L  I L  N   
Sbjct: 265 SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.3 bits (217), Expect = 4e-20
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDI 367
            LT + LA  ++       I     +  L +++   +   P  I  L+ L  L + G D+
Sbjct: 45  SLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDV 100

Query: 368 SGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLV 427
           +      +  L +L  LD+S +     I  +I  L  + S+ LS N     I   +  L 
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLP 159

Query: 428 GLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE 467
            L+  L++ ++ +       +E    L  +      + G+
Sbjct: 160 ELKS-LNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.6 bits (210), Expect = 3e-19
 Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND 366
           +      L  +S      A+   ++ L  + L++  ++      I     +  L++N   
Sbjct: 23  KAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 367 ISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL 426
            +   P  I  L NL+ L +    ++      +  L  L  L +S +  + +I  +I  L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 427 VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
             +   +DLSYN    +I   L+ L  L+S+N+  + +       +     L  +     
Sbjct: 136 PKVNS-IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 487 NL 488
            +
Sbjct: 192 TI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 329 SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM 388
           +    +   L  +  +         +  L+ ++L   +++      I    N+  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL 448
              +   P  I  L +L  L +   ++       +  L  L  L D+S+++    I  ++
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL-DISHSAHDDSILTKI 132

Query: 449 EKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
             L  + S++LS+N    +I   L ++  L ++N+ ++ +
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 5/141 (3%)

Query: 253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLL 312
           T ++   ++  + + +   T +         NL  + +    +  +  P       LTLL
Sbjct: 60  TGIEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372
            ++ ++    I  +I +L ++  +DLS N    +I   +  L EL +L++  + +     
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

Query: 373 EEIGALLNLDSLDLSMNRLSG 393
             I     L+ L      + G
Sbjct: 177 --IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 15/113 (13%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 377 ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
                 +  L  +  +        ++  L  ++L+  N+      +      ++DL  ++
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDL-TIN 74

Query: 437 YNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
               T   P  +  L++L+ + +   +++ +   +LS + SL  +++S++  +
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 30/166 (18%)

Query: 134 QPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVL 193
             +     +K+  + +   +      I     L  L + G  ++     +L  L+ L +L
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 194 AVASNQLSGEIPANIGTLSKLTDLHLFIN-KLSGLPPQVCKGGKLINFTASFNHFSGPIP 252
            ++ +     I   I TL K+  + L  N  ++ + P                       
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP----------------------- 154

Query: 253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE 298
             LK+   L  + ++ + +  D       +P L  +      + G+
Sbjct: 155 --LKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGGK 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 9e-20
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDL 338
            +  +   +DLS+N L+   S  +    +L +L L+   I   I      SLS L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 339 SSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRL-SGPIP 396
           + N +   +       L+ L  L     +++      IG L  L  L+++ N + S  +P
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 397 KQIGELRDLRSLSLSQNNLNGTIPFQI----GNLVGLQDLLDLSYNSLTGEIPAQLEKLT 452
           +    L +L  L LS N +  +I          +  L   LDLS N +   I     K  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
            L+ + L  N L          + SL  + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 20/198 (10%)

Query: 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDI 367
              L L+ N +         S  +L VLDLS  ++   I      +L+ LSTL L GN I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 368 SGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP----FQ 422
              +       L +L  L      L+      IG L+ L+ L+++ N +  +      F 
Sbjct: 89  QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFS 146

Query: 423 IGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQSMN----LSHNNLSGEIPASLSSMLS 477
             NL  L+ L DLS N +   I    L  L  +  +N    LS N ++  I       + 
Sbjct: 147 --NLTNLEHL-DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 478 LVAVNLSYNNLEGPLPDG 495
           L  + L  N L+  +PDG
Sbjct: 202 LKELALDTNQLKS-VPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 51/234 (21%), Positives = 80/234 (34%), Gaps = 39/234 (16%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
              L L  N L      S  +  +L VL ++  ++   I      +LS L+ L L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 225 SGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
             L                   FSG         SSL ++      L        G    
Sbjct: 89  QSLALGA---------------FSG--------LSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 285 LTYIDLSYNRLQGEVSPKWG---KCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVV----L 336
           L  +++++N +Q               L  L L+ N I   I       L Q+ +    L
Sbjct: 126 LKELNVAHNLIQ--SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSL 182

Query: 337 DLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMN 389
           DLS N ++  I         L  L+L+ N +   +P+ I   L +L  + L  N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 1e-19
 Identities = 54/271 (19%), Positives = 112/271 (41%), Gaps = 27/271 (9%)

Query: 221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFG 280
           I ++           + I         +  +       +S+ ++   ++++   ++    
Sbjct: 11  IKQIFPDD--AFA--ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQ 62

Query: 281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS 340
             PN+T + L+ N+L  ++ P     + L  L L  N I   + + +  L +L  L L  
Sbjct: 63  YLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEH 118

Query: 341 NQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG 400
           N +S +I   + +L +L +L L  N I+      +  L  LD+L L  N++S  +P  + 
Sbjct: 119 NGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LA 172

Query: 401 ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMN 458
            L  L++L LS+N+++      +  L GL++L  L+L       +       L    ++ 
Sbjct: 173 GLTKLQNLYLSKNHIS-----DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 459 LSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
            +  +L    P  +S        N+ ++  E
Sbjct: 228 NTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 7e-16
 Identities = 49/275 (17%), Positives = 96/275 (34%), Gaps = 19/275 (6%)

Query: 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201
           +   +     +    P++           L    ++  +      L+ +  +   ++ + 
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
             +   I  L  +T L L  NKL+ + P +     L       N         LK    L
Sbjct: 57  -SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKL 111

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG 321
             + LE N ++ D+       P L  + L  N++  +++    +  KL  L L  N I  
Sbjct: 112 KSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITVL-SRLTKLDTLSLEDNQIS- 166

Query: 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
            I   +  L++L  L LS N +S ++ A +  L  L  L L   +           L+  
Sbjct: 167 DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
           +++  +   L  P    I +  D    ++  +   
Sbjct: 224 NTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
           P           L+   ++  +         +  +  + + +       +  L ++  L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLF 71

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           +  N+L+ +I   +  L  L  L L  NK+  L   +    KL + +   N  S      
Sbjct: 72  LNGNKLT-DIK-PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGIS--DING 126

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           L     L  + L +N++T D+         L  + L  N++  ++ P      KL  L L
Sbjct: 127 LVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 182

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
           + N I       +  L  L VL+L S +   +      NL   +T+      +  P    
Sbjct: 183 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 375 IGALLNLDSLDLSMNRLSGPI 395
                   ++   +   +  +
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 45/271 (16%), Positives = 97/271 (35%), Gaps = 31/271 (11%)

Query: 98  FSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIP 157
             +F   ++      ++ + ++T                  L  +   +  ++ +   + 
Sbjct: 17  DDAFAETIK-----DNLKKKSVT-----------DAVTQNELNSIDQIIANNSDIK-SV- 58

Query: 158 EEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL 217
           + I     +T L L+GN L+  I   L NL +L  L +  N++  ++  ++  L KL  L
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTD-I-KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSL 114

Query: 218 HLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ 277
            L  N +S +   +    +L +     N  +    T L   + L  + LE N+++ D+  
Sbjct: 115 SLEHNGISDING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV- 169

Query: 278 DFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLD 337
                  L  + LS N +  ++       + L +L L       K      +L     + 
Sbjct: 170 PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 338 LSSNQLSGEIPAQIGNLTELSTLSLNGNDIS 368
            +   L    P  I +  +    ++  +   
Sbjct: 228 NTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 66/358 (18%), Positives = 115/358 (32%), Gaps = 36/358 (10%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
               +       L    LS  +P+ +     +T+L +  N L   +P    +L  L    
Sbjct: 54  KECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDAC- 108

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
              N+LS  +P        L  L +  N+L+ LP        L    A  N  +  +P  
Sbjct: 109 --DNRLS-TLPELPA---SLKHLDVDNNQLTMLPELP---ALLEYINADNNQLTM-LPEL 158

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLT---- 310
               +SL  + + +N+LT   E       +L  +D+S N L+  +     +         
Sbjct: 159 P---TSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLE-SLPAVPVRNHHSEETEI 210

Query: 311 LLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP 370
                 N I   IP  I SL     + L  N LS  I   +   T       +G  I   
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD--YHGPRIYFS 267

Query: 371 IPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430
           + +     L+    D             + ++          N  +      +  L    
Sbjct: 268 MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF----LDRLSDTV 323

Query: 431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
              + S      ++ A LEKL++   +      ++ +   S    ++L   NL    L
Sbjct: 324 SARNTS--GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 3e-19
 Identities = 64/276 (23%), Positives = 97/276 (35%), Gaps = 36/276 (13%)

Query: 247 FSGPIPT--SLKSCSSLYRVR-------LESNELTGDLEQDFGIYPN------LTYIDLS 291
           FS P P   S  +C     V        LE      D E D G + +      L  + + 
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 292 YNRLQGEVSP---KWGKCQKLTLLGLAGNSIGGKIPAEIGSLS--QLVVLDLSSNQLSGE 346
             R+   +     +      L  L L    + G  P  +   +   L +L+L +   +  
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 347 IPA----QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI--- 399
                  Q      L  LS+          E++     L +LDLS N   G         
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 400 -GELRDLRSLSLSQNNLN---GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL-EKLTSL 454
             +   L+ L+L    +    G         V LQ  LDLS+NSL     A   +  + L
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ-GLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 455 QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
            S+NLS   L  ++P  L +   L  ++LSYN L+ 
Sbjct: 256 NSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 6e-19
 Identities = 54/227 (23%), Positives = 81/227 (35%), Gaps = 20/227 (8%)

Query: 254 SLKSCSSLYRVRLESNELTGDLEQDFGIY--PNLTYIDLSYNRLQGEVSP----KWGKCQ 307
            +   S L  + LE+ E+TG           P+L  ++L         +     +     
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI-------PAQIGNLTELSTL 360
            L +L +A          ++     L  LDLS N   GE        P +   L  L+  
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE-LRDLRSLSLSQNNLNGTI 419
           +      SG       A + L  LDLS N L         +    L SL+LS   L   +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268

Query: 420 PFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
           P  +     L  +LDLSYN L    P+  E L  + +++L  N    
Sbjct: 269 PKGLPA--KLS-VLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 55/290 (18%), Positives = 92/290 (31%), Gaps = 35/290 (12%)

Query: 89  LAGTLHDLDFSSFPNLLR-FDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLL 147
           L     + D   F ++++   +  L V    +   I            + G+ GL+   L
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR------VLGISGLQELTL 102

Query: 148 QDNMLSGRIPEEIGNCKLLTLLALD-GNFLSGPIPSSLGNLSD-----LAVLAVASNQLS 201
           ++  ++G  P  +       L  L+  N       + L  L       L VL++A     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
                 +     L+ L L  N   G                     S   P    +   L
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVL 206

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIG 320
                     +G           L  +DLS+N L+            +L  L L+   + 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL- 265

Query: 321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP 370
            ++P  +   ++L VLDLS N+L    P     L ++  LSL GN     
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLDS 311

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 17/207 (8%)

Query: 283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ 342
            N   I    + +   V+        +T L   G  +   I   +  L+ L+ L+L  NQ
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQ 74

Query: 343 LSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGEL 402
           ++ ++   + NLT+++ L L+GN +       I  L ++ +LDL+  +++   P  +  L
Sbjct: 75  IT-DLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN 462
            +L+ L L  N +    P  +  L  LQ L  +    ++   P  L  L+ L ++    N
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLTNLQYL-SIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 463 NLSGEIPASLSSMLSLVAVNLSYNNLE 489
            +S +I   L+S+ +L+ V+L  N + 
Sbjct: 184 KIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 19/257 (7%)

Query: 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL 295
             I   A  ++ +  +         +  +      +T  +E       NL  ++L  N++
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLT 355
             +++P      K+T L L+GN +  K  + I  L  +  LDL+S Q++   P  +  L+
Sbjct: 76  T-DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNL 415
            L  L L+ N I+   P  +  L NL  L +   ++S   P  +  L  L +L    N +
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

Query: 416 NGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSM 475
           +   P  + +L  L ++  L  N ++   P  L   ++L  + L++  ++ +     +++
Sbjct: 186 SDISP--LASLPNLIEV-HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 476 LSLVAVNLSYNNLEGPL 492
           +    V         P 
Sbjct: 241 VVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 7e-14
 Identities = 56/285 (19%), Positives = 111/285 (38%), Gaps = 21/285 (7%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
           P   L          + ++        +   +T L+  G  ++      +  L++L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLE 69

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           +  NQ++ ++   +  L+K+T+L L  N L  +   +     +     +    +   P  
Sbjct: 70  LKDNQIT-DLA-PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP-- 124

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           L   S+L  + L+ N++T ++        NL Y+ +   ++  +++P      KLT L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKA 180

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
             N I   I   + SL  L+ + L +NQ+S   P  + N + L  ++L    I+      
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 375 IGALLNLDSLDLSMNRLSGPI-PKQIGELRDLRSLSLSQNNLNGT 418
                NL   ++       PI P  I +     S +L+ N  +  
Sbjct: 237 ---NNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 76/426 (17%), Positives = 139/426 (32%), Gaps = 45/426 (10%)

Query: 92  TLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNM 151
            L   D S    L       L +S N +   +D  +F    NQ +  L       +  N 
Sbjct: 66  ELRMPDISFLSELR-----VLRLSHNRIRS-LDFHVF--LFNQDLEYLD------VSHNR 111

Query: 152 LSGRIPEEIGNCKLLTLLALDGN-FLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGT 210
           L   I         L  L L  N F   P+    GNL+ L  L +++ +        +  
Sbjct: 112 LQN-IS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 211 LSKLTD-LHLFINKLSGLPPQVCKGGKLINFTASFNH---FSGPIPTSLKSCSSLYRVRL 266
           L      L L    + G   +  +          F+    FS  +  S+ +   L    +
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 267 ESNELTGDLEQDFGIYPN---------LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
           + N+        F              L +I+ ++          W +   +  L +   
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP--VEYLNIYNL 286

Query: 318 SIGGKIPAEIG-----SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372
           +I  +I  E       +L  L++  + +        A      E++   L+ +D      
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL 432
               +  +   L+ + N  +  + +    L+ L++L L +N L             +  L
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 433 --LDLSYNSLT-GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
             LD+S NSL             S+  +NLS N L+G +   L     +  ++L  N + 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

Query: 490 GPLPDG 495
             +P  
Sbjct: 464 S-IPKD 468

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 1e-18
 Identities = 72/415 (17%), Positives = 137/415 (33%), Gaps = 38/415 (9%)

Query: 93  LHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNML 152
           L ++      +L       LD+S N+       + F          L  L    L     
Sbjct: 112 LQNISCCPMASLR-----HLDLSFNDFDVLPVCKEF--------GNLTKLTFLGLSAAKF 158

Query: 153 SGRIPEEIGNCKLLTL-LALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTL 211
                  + +  L  + L L    + G    SL   +   +  V        +  N+  +
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-V 217

Query: 212 SKLTDLHLFINKLSGLP--------PQVCKGGKLINFTASFNHFSGPIPTSLKSC---SS 260
           + L  L L   KL+            ++ +G  L+N T      +      L        
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 261 LYRVRLESNELTGDLEQDFGIY-----PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA 315
           +  + + +  +T  ++++   Y      +L    +            +    ++ +  L+
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 316 GNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS--GPIPE 373
            +           S S    L+ + N  +  +      L  L TL L  N +     +  
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 374 EIGALLNLDSLDLSMNRL-SGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL 432
               + +L++LD+S+N L S    +       +  L+LS N L G++      L     +
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKV 454

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
           LDL  N +   IP  +  L +LQ +N++ N L          + SL  + L  N 
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 12/235 (5%)

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG 316
           S      V   +  LT   +    + P    + LS N +     P      +L +L L+ 
Sbjct: 29  SNELESMVDYSNRNLTHVPK---DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSH 85

Query: 317 NSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDI-SGPIPEE 374
           N I   +   +      L  LD+S N+L   I      +  L  L L+ ND    P+ +E
Sbjct: 86  NRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKE 141

Query: 375 IGALLNLDSLDLSMNRL-SGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
            G L  L  L LS  +     +            L L   ++ G     +        +L
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP--NTTVL 199

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            L ++  +         + +L  + LS+  L+ E    L + LS +    +  N+
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 46/322 (14%), Positives = 93/322 (28%), Gaps = 23/322 (7%)

Query: 185 GNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA-- 242
                   L+++ N +S     +I  LS+L  L L  N++  L   V       +     
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLD 106

Query: 243 -SFNHFSGPIPTSLKSCSSLYRVRLESNELTG-DLEQDFGIYPNLTYIDLSYNRLQGEVS 300
            S N         +    SL  + L  N+     + ++FG    LT++ LS  + +    
Sbjct: 107 VSHNRLQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 301 PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360
                     +L    +        E   +    VL L  +  S        ++  L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 361 SLNGNDISG-------PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGEL---RDLRSLSL 410
            L+   ++            E+     L ++ L     +     ++ +    R +  L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 411 SQNNLNGTIPFQIGNLVGLQ----DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
               +   I  +             +  +          A       +    LS ++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 467 EIPASLSSMLSLVAVNLSYNNL 488
                  S  S   +N + N  
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVF 365

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
             + +   +  L+   +T  + Q+     ++  I  + + ++  V         +T L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
            GN +   I   + +L  L  L L  N++  ++ + + +L +L +LSL  N IS      
Sbjct: 76  NGNKLT-DIK-PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DING 129

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLD 434
           +  L  L+SL L  N+++      +  L  L +LSL  N ++  +P     L  LQ+L  
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNL-Y 184

Query: 435 LSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 491
           LS N ++ ++ A L  L +L  + L       +     S+++    V  +  +L  P
Sbjct: 185 LSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 52/256 (20%), Positives = 109/256 (42%), Gaps = 23/256 (8%)

Query: 236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL 295
           + I         +  +       +S+ ++   ++++   ++      PN+T + L+ N+L
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL 80

Query: 296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLT 355
             ++ P     + L  L L  N +   + + +  L +L  L L  N +S +I   + +L 
Sbjct: 81  T-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLP 134

Query: 356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNL 415
           +L +L L  N I+      +  L  LD+L L  N++S  +P  +  L  L++L LS+N++
Sbjct: 135 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 416 NGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLS 473
           +      +  L GL++L  L+L       +       L    ++  +  +L    P  +S
Sbjct: 191 S-----DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 474 SMLSLVAVNLSYNNLE 489
                   N+ ++  E
Sbjct: 244 DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 41/284 (14%)

Query: 135 PMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLA 194
                       L+   ++  +         +  +  + + +       +  L ++  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLF 74

Query: 195 VASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTS 254
           +  N+L+ +I   +  L  L  L L  NK+  L                           
Sbjct: 75  LNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSS------------------------- 107

Query: 255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL 314
           LK    L  + LE N ++ D+       P L  + L  N++  +++    +  KL  L L
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITVL-SRLTKLDTLSL 163

Query: 315 AGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
             N I       +  L++L  L LS N +S ++ A +  L  L  L L   +        
Sbjct: 164 EDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINH 219

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418
              L+  +++  +   L    P+ I +  D    ++  +    T
Sbjct: 220 QSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 19/175 (10%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLNGNDISGPIPEEIGA--- 377
           +P  + S +   +LDLS N LS  + A+     LT L +L L+ N ++  I     A   
Sbjct: 33  VPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISS--EAFVP 86

Query: 378 LLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
           + NL  LDLS N L   + + +  +L+ L  L L  N++         ++  LQ  L LS
Sbjct: 87  VPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-KLYLS 144

Query: 437 YNSLTGEIPAQ----LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
            N ++   P +      KL  L  ++LS N L       L  + + V   L  +N
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 9e-15
 Identities = 45/172 (26%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKC--QKLTLLGLAGNSIGGKIPAEI-GSLSQLVVL 336
            +      +DLS+N L   +  +W       L  L L+ N +   I +E    +  L  L
Sbjct: 36  SLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYL 93

Query: 337 DLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGP 394
           DLSSN L   +   +  +L  L  L L  N I   +       +  L  L LS N++S  
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISR- 150

Query: 395 IPKQI----GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-LDLSYNSLT 441
            P ++     +L  L  L LS N L       +  L       L L  N L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 31/156 (19%)

Query: 147 LQDNMLSGRIPEEIGNCKL--LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEI 204
           L  N LS R+  E    +L  L  L L  N L+     +   + +L  L ++SN L   +
Sbjct: 46  LSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TL 103

Query: 205 PANI-GTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYR 263
              +   L  L  L L+ N +  +                   F           + L +
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNA---------------FED--------MAQLQK 140

Query: 264 VRLESNELT---GDLEQDFGIYPNLTYIDLSYNRLQ 296
           + L  N+++    +L +D    P L  +DLS N+L+
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.7 bits (188), Expect = 5e-15
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 43/256 (16%)

Query: 157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEI---PANIGTLSK 213
             +    + L    L     +  + S L +  +L  L   +      I      +  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 214 LTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG 273
             +   + + L  + P      +        + F           + +  + L   +LT 
Sbjct: 401 EKETLQYFSTLKAVDPM-----RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454

Query: 274 DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQL 333
            L         +T++DLS+NRL+                          +P  + +L  L
Sbjct: 455 VLC-HLEQLLLVTHLDLSHNRLR-------------------------ALPPALAALRCL 488

Query: 334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG-PIPEEIGALLNLDSLDLSMNRLS 392
            VL  S N L   +   + NL  L  L L  N +      + + +   L  L+L  N   
Sbjct: 489 EVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN--- 543

Query: 393 GPIPKQIGELRDLRSL 408
             + ++ G    L  +
Sbjct: 544 -SLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.4 bits (182), Expect = 3e-14
 Identities = 46/221 (20%), Positives = 73/221 (33%), Gaps = 27/221 (12%)

Query: 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQG------------EVSPKWGKCQKLTLLG 313
           +   +      +D      L   +LS  +               E+ P+   C    +L 
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 391

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLD--------LSSNQLSGEIPAQIGNLTELSTLSLNGN 365
           +            +   S L  +D           ++   E         ++  L L   
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 366 DISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGN 425
           D++  +   +  LL +  LDLS NRL   +P  +  LR L  L  S N L   +   + N
Sbjct: 452 DLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVAN 506

Query: 426 LVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSMNLSHNNLS 465
           L  LQ+L  L  N L        L     L  +NL  N+L 
Sbjct: 507 LPRLQEL-LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 4e-14
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 28/187 (14%)

Query: 324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS-------------LNGNDISGP 370
             +  +  QL   +LS  + +  + +++ +  EL  L              +   D    
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 371 IPEEIGALLNLDSLD--------LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422
             E +     L ++D           ++          E  D+R L L+  +L   +   
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH- 458

Query: 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVN 482
           +  L+ +  L DLS+N L   +P  L  L  L+ +  S N L   +   ++++  L  + 
Sbjct: 459 LEQLLLVTHL-DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 483 LSYNNLE 489
           L  N L+
Sbjct: 515 LCNNRLQ 521

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 8e-15
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 10/193 (5%)

Query: 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSL-NGND 366
              L      +             L  +++S N +   I A +  NL +L  + +   N+
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 367 ISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP---FQI 423
           +    PE    L NL  L +S   +                L +  N    TI    F  
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV- 150

Query: 424 GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA-SLSSMLSLVAVN 482
             L     +L L+ N +  EI       T L  +NLS NN   E+P          V ++
Sbjct: 151 -GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 483 LSYNNLEGPLPDG 495
           +S   +   LP  
Sbjct: 209 ISRTRIH-SLPSY 220

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 60/273 (21%), Positives = 102/273 (37%), Gaps = 41/273 (15%)

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK 256
            ++++ EIP+++       +L   + KL  +                   FSG       
Sbjct: 18  ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA---------------FSG------- 52

Query: 257 SCSSLYRVRLESNELTGDLEQD-FGIYPNLTYIDLS-YNRLQGEVSPKW-GKCQKLTLLG 313
               L ++ +  N++   +E D F   P L  I +   N L   ++P+       L  L 
Sbjct: 53  -FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL 110

Query: 314 LAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLNGNDISGP 370
           ++   I   +P        Q V+LD+  N     I      G   E   L LN N I   
Sbjct: 111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168

Query: 371 IPEEIGALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGL 429
           I         LD L+LS N     +P  +         L +S+  ++ ++P     L  L
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENL 225

Query: 430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN 462
           + L   S  +L  ++P  LEKL +L   +L++ 
Sbjct: 226 KKLRARSTYNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 58/279 (20%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLF-INK 223
              L      L      +     DL  + ++ N +   I A++   L KL ++ +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 224 LSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYP 283
           L  + P+  +                          +L  + + +  +    +       
Sbjct: 92  LLYINPEAFQN-----------------------LPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343
               +D+  N     +          + +GL+                + V+L L+ N +
Sbjct: 129 QKVLLDIQDNINIHTIERN-------SFVGLS---------------FESVILWLNKNGI 166

Query: 344 SGEIPAQIGNLTELSTLSL-NGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQIGE 401
             EI     N T+L  L+L + N++   +P ++         LD+S  R+   +P     
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIH-SLPSYG-- 221

Query: 402 LRDLRSL-SLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS 439
           L +L+ L + S  NL      +   LV L +   L+Y S
Sbjct: 222 LENLKKLRARSTYNLKKLPTLE--KLVALME-ASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 359 TLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418
                 + ++  IP ++    N   L   + +L            DL  + +SQN++   
Sbjct: 13  VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 419 IPFQI-GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA-SLSSML 476
           I   +  NL  L ++     N+L    P   + L +LQ + +S+  +   +P       L
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 477 SLVAVNLSYNNLEGPLPDGS 496
             V +++  N     +   S
Sbjct: 129 QKVLLDIQDNINIHTIERNS 148

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 20/186 (10%)

Query: 282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341
             N    +L    +   VS K  +   +       ++I  +  A +   + L  L LS N
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHN 73

Query: 342 QLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE 401
           Q+S ++   + +LT+L  LS+N N +             L  L L  N L       +  
Sbjct: 74  QIS-DLSP-LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDTDS--LIH 126

Query: 402 LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMNL 459
           L++L  LS+  N L       I  L  L  L  LDL  N +T      L +L  +  ++L
Sbjct: 127 LKNLEILSIRNNKLK-----SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDL 179

Query: 460 SHNNLS 465
           +     
Sbjct: 180 TGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL 386
              L+  V  +L    ++  +      L+ +   + + ++I       +    NL  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPA 446
           S N++S   P  + +L  L  LS+++N L          L      L L  N L      
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS----RLFLDNNELRDTDS- 123

Query: 447 QLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
            L  L +L+ +++ +N L   I   L  +  L  ++L  N + 
Sbjct: 124 -LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 45/241 (18%), Positives = 88/241 (36%), Gaps = 26/241 (10%)

Query: 253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLL 312
                 ++  +  L    +T DL         +   +   + +Q  ++        L  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372
            L+ N I   +   +  L++L  L ++ N+L   +   I +   LS L L+ N++     
Sbjct: 69  HLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDT-- 121

Query: 373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL 432
           + +  L NL+ L +  N+L   +   +G L  L  L L  N +        G L  L+ +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT-----NTGGLTRLKKV 174

Query: 433 --LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI--PASLSSMLSLVAVNLSYNNL 488
             +DL+      E      +L    ++     +  G    P  +S+  S V   + +   
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTV----KDPDGRWISPYYISNGGSYVDGCVLWELP 230

Query: 489 E 489
            
Sbjct: 231 V 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 42/262 (16%)

Query: 158 EEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL 217
                        L    ++     S   LS +      ++ +   +   +   + L +L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68

Query: 218 HLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ 277
           HL  N++S L P                         LK  + L  + +  N L  +L  
Sbjct: 69  HLSHNQISDLSP-------------------------LKDLTKLEELSVNRNRLK-NLNG 102

Query: 278 DFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLD 337
                  L+ + L  N L+ +        + L +L +  N +  K    +G LS+L VLD
Sbjct: 103 IPS--ACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLD 156

Query: 338 LSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSL-DLSMNRLSGPIP 396
           L  N+++      +  L +++ + L G        +    L   +++ D     +S   P
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS---P 211

Query: 397 KQIGELRDLRSLSLSQNNLNGT 418
             I          +       T
Sbjct: 212 YYISNGGSYVDGCVLWELPVYT 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 41/242 (16%)

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG 316
            C      R+   ++     +   + P+   + L    L+                    
Sbjct: 9   ECHQEEDFRVTCKDIQ----RIPSLPPSTQTLKLIETHLR-------------------- 44

Query: 317 NSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEE 374
                 IP+    +L  +  + +S +    ++ +    NL++++ + +        I  +
Sbjct: 45  -----TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 375 I-GALLNLDSLDLSMNRLSG-PIPKQIGELRDLRSLSLSQNNLNGTIPFQI-GNLVGLQD 431
               L  L  L +    L   P   ++        L ++ N    +IP      L     
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS----LSSMLSLVAVNLSYNN 487
            L L  N  T  +       T L ++ L+ N     I       + S  SL  +++S  +
Sbjct: 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL--LDVSQTS 216

Query: 488 LE 489
           + 
Sbjct: 217 VT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 36/231 (15%)

Query: 214 LTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG 273
              L L    L  +P                + FS           ++ R+ +  +    
Sbjct: 33  TQTLKLIETHLRTIPS---------------HAFSN--------LPNISRIYVSIDVTLQ 69

Query: 274 DLEQD-FGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAE--IGS 329
            LE   F     +T+I++   R    + P    +   L  LG+    +    P    + S
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYS 128

Query: 330 LSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387
                +L+++ N     IP     G   E  TL L  N  +  +         LD++ L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187

Query: 388 MNRLSGPIPKQI--GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
            N+    I K    G       L +SQ ++   +P +   L  L++L+  +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 18/161 (11%)

Query: 78  SVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMT 137
            VT I + NT     +        P L       L +    +       +FPD     + 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLL-----KFLGIFNTGLK------MFPDLTK--VY 127

Query: 138 GLLGLKNFLLQDNMLSGRIPEEI--GNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAV 195
                    + DN     IP     G C     L L  N  +  +     N + L  + +
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYL 186

Query: 196 ASNQLSGEIPANI--GTLSKLTDLHLFINKLSGLPPQVCKG 234
             N+    I  +   G  S  + L +    ++ LP +  + 
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 17/186 (9%)

Query: 309 LTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGND 366
              L L  N +   +P++    L++L +L L+ N+L   +PA I   L  L TL +  N 
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 367 ISGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQI-GELRDLRSLSLSQNNLNGTIP---F 421
           +   +P  +   L+NL  L L  N+L   +P ++   L  L  LSL  N L  ++P   F
Sbjct: 97  LQA-LPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 422 QIGNLVGLQDLLDLSYNSLTGEIPAQL-EKLTSLQSMNLSHNNLSGEIPASLSSMLSLVA 480
               L  L++L  L  N L   +P    +KLT L+++ L +N L      +  S+  L  
Sbjct: 154 D--KLTSLKEL-RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 481 VNLSYN 486
           + L  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 59/207 (28%), Positives = 80/207 (38%), Gaps = 37/207 (17%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
              L L  N LS     +   L+ L +L +  N+L   +PA I   L  L  L +  NKL
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 225 SGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQD-FGIYP 283
             LP  V               F            +L  +RL+ N+L   L    F    
Sbjct: 98  QALPIGV---------------FDQL--------VNLAELRLDRNQLK-SLPPRVFDSLT 133

Query: 284 NLTYIDLSYNRLQGEVSPKWG---KCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLS 339
            LTY+ L YN LQ   S   G   K   L  L L  N +  ++P      L++L  L L 
Sbjct: 134 KLTYLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLD 189

Query: 340 SNQLSGEIPAQI-GNLTELSTLSLNGN 365
           +NQL   +P     +L +L  L L  N
Sbjct: 190 NNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 16/187 (8%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEI-GNCKLLTLL 169
           +LD+  N ++  +  + F          L  L+   L DN L   +P  I    K L  L
Sbjct: 41  KLDLQSNKLSS-LPSKAF--------HRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETL 90

Query: 170 ALDGNFLSGPIPSSL-GNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLSGL 227
            +  N L   +P  +   L +LA L +  NQL   +P  +  +L+KLT L L  N+L  L
Sbjct: 91  WVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL 148

Query: 228 PPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT 286
           P  V      L       N        +    + L  ++L++N+L    E  F     L 
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 287 YIDLSYN 293
            + L  N
Sbjct: 209 MLQLQEN 215

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 7e-14
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLD 382
           +P ++       +L LS N L     A +   T L+ L+L+  +++    +  G L  L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLG 80

Query: 383 SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP---FQIGNLVGLQDLLDLSYNS 439
           +LDLS N+L   +P     L  L  L +S N L  ++P    +   L  LQ+ L L  N 
Sbjct: 81  TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALR--GLGELQE-LYLKGNE 135

Query: 440 LTGEIPAQL-EKLTSLQSMNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNLEGPLPDG 495
           L   +P  L      L+ ++L++NNL+ E+PA L + + +L  + L  N+L   +P G
Sbjct: 136 LK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 53/227 (23%), Positives = 83/227 (36%), Gaps = 36/227 (15%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
              +  D   L+  +P  L    D  +L ++ N L     A +   ++LT L+L   +L+
Sbjct: 12  HLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 226 GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
            L                                 L  + L  N+L   L       P L
Sbjct: 69  KLQV--------------DGTL-----------PVLGTLDLSHNQLQ-SLPLLGQTLPAL 102

Query: 286 TYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQL 343
           T +D+S+NRL   +         +L  L L GN +   +P  +     +L  L L++N L
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNL 160

Query: 344 SGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389
           + E+PA +   L  L TL L  N +   IP+       L    L  N
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 52/226 (23%), Positives = 70/226 (30%), Gaps = 55/226 (24%)

Query: 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201
                L +N+L       +     LT L LD   L+       G L  L  L ++ NQL 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ 90

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
             +P    TL  LT L +  N+L+ LP                    G           L
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLTSLPLGA---------------LRGL--------GEL 126

Query: 262 YRVRLESNELTGDLEQD-FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320
             + L+ NEL   L        P L  + L+ N L                         
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT------------------------ 161

Query: 321 GKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN 365
            ++PA +   L  L  L L  N L   IP        L    L+GN
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 49/255 (19%)

Query: 283 PNLTYIDLSYNRLQGE----VSPKWGKCQKLTLLGLAGNSIG---GKIPAEIGSLS---- 331
            ++  I LS N +  E    +S      + L +   +    G    +IP  +  L     
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 332 ---QLVVLDLSSNQLSGEIPAQIGNL----TELSTLSLNGNDIS-------------GPI 371
              +L  + LS N         + +     T L  L L+ N +                +
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGEL----RDLRSLSLSQNNLN--GTIPFQIGN 425
            ++      L S+    NRL     K+  +     R L ++ + QN +   G     +  
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 426 LVGLQDL--LDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML--- 476
           L   Q+L  LDL  N+ T      +   L+   +L+ + L+   LS    A++       
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 477 ---SLVAVNLSYNNL 488
               L  + L YN +
Sbjct: 272 ENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 53/358 (14%), Positives = 103/358 (28%), Gaps = 79/358 (22%)

Query: 166 LTLLALDGNFLSG----PIPSSLGNLSDLAVLAVASNQLSGE----IPANIGTLSKLTDL 217
           +   +L  + ++      + + L     +  + ++ N +  E    +  NI +   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 218 HLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD--- 274
                    +  ++ +  +L+               +L  C  L+ VRL  N        
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLL-------------QALLKCPKLHTVRLSDNAFGPTAQE 112

Query: 275 -LEQDFGIYPNLTYIDLSYNRL-------------QGEVSPKWGKCQKLTLLGLAGNSIG 320
            L      +  L ++ L  N L             +  V+ K      L  +    N + 
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 321 GK----IPAEIGSLSQLVVLDLSSNQLSGE-----IPAQIGNLTELSTLSLNGNDISGPI 371
                       S   L  + +  N +  E     +   +    EL  L L  N  +   
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 372 PEEIGALL----NLDSLDLSMNRLSGPIPKQIGE-LRDLRSLSLSQNNLNGTIPFQIGNL 426
              +   L    NL  L L+   LS      + +    L ++ L                
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT-------------- 278

Query: 427 VGLQDLLDLSYNSLTGE-----IPAQLEKLTSLQSMNLSHNNLS--GEIPASLSSMLS 477
                 L L YN +  +          EK+  L  + L+ N  S   ++   +  + S
Sbjct: 279 ------LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 72/302 (23%)

Query: 250 PIPTSLKSCSSLYRVRLESNELTGD----LEQDFGIYPNLTYIDLSYNRLQGEVSPKWG- 304
            +   L    S+  + L  N +  +    L ++     +L   + S     G V  +   
Sbjct: 23  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPE 81

Query: 305 ----------KCQKLTLLGLAGNSIGGKIPAEIGSL----SQLVVLDLSSNQLSGE---- 346
                     KC KL  + L+ N+ G      +       + L  L L +N L  +    
Sbjct: 82  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141

Query: 347 ---------IPAQIGNLTELSTLSLNGNDISGPIPEEIGALL----NLDSLDLSMNRLSG 393
                    +  +  N   L ++    N +     +E          L ++ +  N +  
Sbjct: 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 394 P-IPKQIGEL----RDLRSLSLSQNNLNGTIPFQIGN---------LVGLQDL--LDLSY 437
             I   + E     ++L+ L L  N           +         L    +L  L L+ 
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDN--------TFTHLGSSALAIALKSWPNLRELGLND 253

Query: 438 NSLTGE----IPAQLEKL--TSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNLSYN 486
             L+      +     KL    LQ++ L +N +  +   +L +++      L+ + L+ N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 487 NL 488
             
Sbjct: 314 RF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 47/276 (17%), Positives = 74/276 (26%), Gaps = 62/276 (22%)

Query: 142 LKNFLLQDNMLSGR----IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVAS 197
           L    L DN         + + +     L  L L  N            L   A   +A 
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-----------GLGPQAGAKIAR 144

Query: 198 NQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKS 257
                 +         L  +    N+L           K                 + +S
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLEN------GSMKEWA-------------KTFQS 185

Query: 258 CSSLYRVRLESNELTGD-----LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGK----CQK 308
              L+ V++  N +  +     L +       L  +DL  N      S            
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 309 LTLLGLAGNSIGGKIPAEIGSL------SQLVVLDLSSNQLSGE-----IPAQIGNLTEL 357
           L  LGL    +  +  A +           L  L L  N++  +            + +L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 358 STLSLNGNDIS--GPIPEEIGALL------NLDSLD 385
             L LNGN  S    + +EI  +        LD LD
Sbjct: 306 LFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 35/173 (20%)

Query: 351 IGNLTELSTLSLNGNDISG----PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGEL---- 402
           +   + +   SL  + I+      +   +    ++  + LS N +     + + E     
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDL---------LDLSYNSLTGE----IPAQLE 449
           +DL     S              L  L            + LS N+        +   L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 450 KLTSLQSMNLSHNNLSGEIPASLSSML-------------SLVAVNLSYNNLE 489
           K T L+ + L +N L  +  A ++  L              L ++    N LE
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.1 bits (162), Expect = 8e-12
 Identities = 70/422 (16%), Positives = 125/422 (29%), Gaps = 90/422 (21%)

Query: 111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR----IPEEIGNCKLL 166
            LD+    ++      L P  +          +   L D  L+      I   +     L
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQ--------CQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 167 TLLALDGNFLSGPIPSSLGNL-----SDLAVLAVASNQLSGE----IPANIGTLSKLTDL 217
             L L  N L       +          +  L++ +  L+G     + + + TL  L +L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 218 HLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ 277
           HL  N L         G +L+                L     L +++LE   L+    +
Sbjct: 119 HLSDNLLGD------AGLQLL------------CEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 278 DFG----IYPNLTYIDLSYNRLQGEVSPKWGKCQK-----LTLLGLAGNSIGGK----IP 324
                    P+   + +S N +         +  K     L  L L    +       + 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 325 AEIGSLSQLVVLDLSSNQLSGE-----IPAQIGNLTELSTLSLNGNDISGPIPEEIGALL 379
             + S + L  L L SN+L         P  +   + L TL +    I+     ++  +L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 380 ----NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435
               +L  L L+ N L     + + E        L                      L +
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES--------------------LWV 320

Query: 436 SYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNLSYN 486
              S T        + L +   L  + +S+N L       L   L      L  + L+  
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 487 NL 488
           ++
Sbjct: 381 DV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 63/394 (15%), Positives = 119/394 (30%), Gaps = 86/394 (21%)

Query: 142 LKNFLLQDNMLSGR----IPEEIGNCKLLTLLALDGNFLSGPIPSSLG-----NLSDLAV 192
           ++   LQ+  L+G     +   +     L  L L  N L       L          L  
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 193 LAVASNQLSGEIPANIGTL----SKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFS 248
           L +    LS      + ++        +L +  N ++        G +++      +   
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE------AGVRVLCQGLKDSP-- 198

Query: 249 GPIPTSLKSCSSLYRVRLESNELTGD----LEQDFGIYPNLTYIDLSYNRLQGE------ 298
                       L  ++LES  +T D    L        +L  + L  N+L         
Sbjct: 199 ----------CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248

Query: 299 VSPKWGKCQKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGE-----IPA 349
                    +L  L +    I  K    +   + +   L  L L+ N+L  E        
Sbjct: 249 PGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307

Query: 350 QIGNLTELSTLSLNGNDISGPIPEEIGALL----NLDSLDLSMNRLSGPIPKQIGEL--- 402
            +    +L +L +     +        ++L     L  L +S NRL     +++ +    
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 403 --RDLRSLSLSQNNLNGTIPFQIGNLVGLQDL------------LDLSYNSLTGE----I 444
               LR L L+  +++ +             L            LDLS N L       +
Sbjct: 368 PGSVLRVLWLADCDVSDS---------SCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418

Query: 445 PAQLEKLTS-LQSMNLSHNNLSGEIPASLSSMLS 477
              + +    L+ + L     S E+   L ++  
Sbjct: 419 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 56/360 (15%), Positives = 110/360 (30%), Gaps = 76/360 (21%)

Query: 166 LTLLALDGNFLSGP-IPSSLGNLSDLAVLAVASNQLSGE----IPANIGTLSKLTDLHLF 220
           +  L +    LS       L  L    V+ +    L+      I + +     L +L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCS-SLYRVRLESNELT----GDL 275
            N+L         G   +                L++ S  + ++ L++  LT    G L
Sbjct: 65  SNELGD------VGVHCVL-------------QGLQTPSCKIQKLSLQNCCLTGAGCGVL 105

Query: 276 EQDFGIYPNLTYIDLSYNRLQGEVSPKWGK-----CQKLTLLGLAGNSIGGKIPAEIGSL 330
                  P L  + LS N L         +       +L  L L   S+       + S+
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 331 ----SQLVVLDLSSNQLSGE-----IPAQIGNLTELSTLSLNGNDISGPIPEEIGALL-- 379
                    L +S+N ++             +  +L  L L    ++     ++  ++  
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 380 --NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY 437
             +L  L L  N+L             +  L     + +  +             L +  
Sbjct: 226 KASLRELALGSNKLGD---------VGMAELCPGLLHPSSRL-----------RTLWIWE 265

Query: 438 NSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNLSYNNL 488
             +T +    +   L    SL+ ++L+ N L  E    L   L      L ++ +   + 
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 43/228 (18%)

Query: 284 NLTYIDLSYNRLQGEVSPKWGKC-QKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDL 338
           ++  +D+    L      +     Q+  ++ L    +       I + +     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 339 SSNQLSGEIPAQIGNL-----TELSTLSLNGNDISGPIPEEIGALL----NLDSLDLSMN 389
            SN+L       +         ++  LSL    ++G     + + L     L  L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE----IP 445
            L     + + E        L                  L+ L  L Y SL+      + 
Sbjct: 124 LLGDAGLQLLCEG-------LLDPQCR------------LEKL-QLEYCSLSAASCEPLA 163

Query: 446 AQLEKLTSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNLSYNNL 488
           + L      + + +S+N+++      L   L      L A+ L    +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 34/172 (19%)

Query: 331 SQLVVLDLSSNQLSGEIPAQIG-NLTELSTLSLNGNDISGPIPEEIGALL----NLDSLD 385
             +  LD+   +LS    A++   L +   + L+   ++    ++I + L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE-- 443
           L  N L       + +        L   +                  L L    LTG   
Sbjct: 63  LRSNELGDVGVHCVLQ-------GLQTPSCKIQK-------------LSLQNCCLTGAGC 102

Query: 444 --IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNLSYNNL 488
             + + L  L +LQ ++LS N L       L   L      L  + L Y +L
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLD 337
            +   +T I L  N ++  + P  +   +KL  + L+ N I  ++  +    L  L  L 
Sbjct: 29  NLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLV 86

Query: 338 LSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPI 395
           L  N+++ E+P  +   L  L  L LN N I+  +  +    L NL+ L L  N+L    
Sbjct: 87  LYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 396 PKQIGELRDLRSLSLSQN 413
                 LR ++++ L+QN
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKL 309
           +P ++        +RLE N +       F  Y  L  IDLS N++  E++P  +   + L
Sbjct: 30  LPETIT------EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 310 TLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDI 367
             L L GN I  ++P  +   L  L +L L++N+++  +      +L  L+ LSL  N +
Sbjct: 83  NSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

Query: 368 SGPIPEEIGALLNLDSLDLSMN 389
                     L  + ++ L+ N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 36/158 (22%)

Query: 335 VLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGA---LLNLDSLDLSMNR 390
            + L  N +   IP        +L  + L+ N IS  +     A   L +L+SL L  N+
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAP--DAFQGLRSLNSLVLYGNK 91

Query: 391 LSGPIPKQI-GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE 449
           ++  +PK +   L  L+ L L+ N +N  +                             +
Sbjct: 92  ITE-LPKSLFEGLFSLQLLLLNANKIN-CLR------------------------VDAFQ 125

Query: 450 KLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
            L +L  ++L  N L      + S + ++  ++L   N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKLS 225
           T + L+ N +    P +      L  + +++NQ+S E+  +    L  L  L L+ NK++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 226 GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
            LP  +                        +   SL  + L +N++       F    NL
Sbjct: 94  ELPKSL-----------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130

Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN 317
             + L  N+LQ      +   + +  + LA N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 62.3 bits (150), Expect = 1e-10
 Identities = 45/259 (17%), Positives = 82/259 (31%), Gaps = 36/259 (13%)

Query: 249 GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK 308
           G      + CS +    +E+ E     E  F    +    ++S+   Q ++SP       
Sbjct: 115 GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMPL 173

Query: 309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIG-----NLTELSTLSLN 363
           L  L + G +              L  L++ S  L   +   I      NL +L      
Sbjct: 174 LNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI 423
            +            L + D             P        L+ L +        +    
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRF-----------PN-------LKWLGIVDAEEQNVVVEMF 272

Query: 424 GNLVGLQDL--LDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS 477
                L  L  +D+S   LT E    +   ++K+  L+ +N+ +N LS E+   L   L 
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP 332

Query: 478 LVAVNLSYNNLEGPLPDGS 496
              + +  ++ +    D S
Sbjct: 333 ---MKIDVSDSQEYDDDYS 348

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339
             +      +L    +  +   +      +  +    + I   +   I  L  +  L L 
Sbjct: 16  DAFAETIKANLKKKSVT-DAVTQNEL-NSIDQIIANNSDIK-SVQG-IQYLPNVRYLALG 71

Query: 340 SNQLSGEIPAQIG---NLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPI 395
            N+L       I     LT L+ L L GN +   +P  +   L NL  L L  N+L    
Sbjct: 72  GNKLH-----DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLP 125

Query: 396 PKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL-EKLTSL 454
                +L +L  L+L+ N L          L  L +L DLSYN L   +P  + +KLT L
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-DLSYNQLQ-SLPEGVFDKLTQL 183

Query: 455 QSMNLSHNNL 464
           + + L  N L
Sbjct: 184 KDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 49/220 (22%), Positives = 79/220 (35%), Gaps = 36/220 (16%)

Query: 167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG 226
               L    ++  +  +   L+ +  +   ++ +       I  L  +  L L  NKL  
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 227 LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT 286
           +               +    +           +L  + L  N+L       F    NL 
Sbjct: 78  IS--------------ALKELT-----------NLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 287 YIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSG 345
            + L  N+LQ      + K   LT L LA N +   +P  +   L+ L  LDLS NQL  
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ- 170

Query: 346 EIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSL 384
            +P  +   LT+L  L L  N +   +P+  G    L SL
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDRLTSL 207

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 280 GIYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLD 337
            I      + L+ N     E +  + K  +L  +  + N I   I        S +  + 
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEIL 87

Query: 338 LSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPI 395
           L+SN+L   +  ++   L  L TL L  N I+  +  +    L ++  L L  N+++  +
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TV 144

Query: 396 PKQI-GELRDLRSLSLSQN 413
                  L  L +L+L  N
Sbjct: 145 APGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 337 DLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPI 395
           D S+ +L+ +IP  I      + L LN N+ +      I   L  L  ++ S N+++   
Sbjct: 17  DCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE 73

Query: 396 PKQIGELRDLRSLSLSQNNLNGTIPFQI-GNLVGLQDLLDLSYNSLTGEIPAQL-EKLTS 453
                    +  + L+ N L   +  ++   L  L+  L L  N +T  +       L+S
Sbjct: 74  EGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLK-TLMLRSNRIT-CVGNDSFIGLSS 130

Query: 454 LQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
           ++ ++L  N ++   P +  ++ SL  +NL   N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 78/203 (38%)

Query: 167 TLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLSKLTDLHLFINKL 224
             L L+ N  +          L  L  +  ++N+++ +I        S + ++ L  N+L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 225 SGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
             +  ++ KG                                    L            +
Sbjct: 94  ENVQHKMFKG------------------------------------LE-----------S 106

Query: 285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQL 343
           L  + L  NR+                           +  +    LS + +L L  NQ+
Sbjct: 107 LKTLMLRSNRIT-------------------------CVGNDSFIGLSSVRLLSLYDNQI 141

Query: 344 SGEIPAQI-GNLTELSTLSLNGN 365
           +  +       L  LSTL+L  N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 332 QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRL 391
           + V L      +  ++ A +  L     L+L+ N+I   I   +  + NL  L L  N +
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

Query: 392 SGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLT--GEIPAQ 447
              I         L  L +S N +       +  +  L +L  L +S N +T  GEI  +
Sbjct: 83  KK-IENLDAVADTLEELWISYNQIA-----SLSGIEKLVNLRVLYMSNNKITNWGEI-DK 135

Query: 448 LEKLTSLQSMNLSHNNLSGEIPASLS 473
           L  L  L+ + L+ N L  +   + +
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 21/141 (14%)

Query: 353 NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK--QIGELRDLRSLSL 410
              ++  L      I   +   +  L     L LS N     I K   +  + +LR LSL
Sbjct: 24  EAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSL 77

Query: 411 SQNNLNGTIPFQIGNLVGLQDL---LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS-- 465
            +N +      +I NL  + D    L +SYN +   +   +EKL +L+ + +S+N ++  
Sbjct: 78  GRNLIK-----KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNW 130

Query: 466 GEIPASLSSMLSLVAVNLSYN 486
           GEI   L+++  L  + L+ N
Sbjct: 131 GEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 305 KCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364
             +    L L+ N+I  KI + +  +  L +L L  N +  +I         L  L ++ 
Sbjct: 46  TLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIP-KQIGELRDLRSLSLSQN 413
           N I+      I  L+NL  L +S N+++      ++  L  L  L L+ N
Sbjct: 103 NQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 21/113 (18%), Positives = 52/113 (46%), Gaps = 11/113 (9%)

Query: 379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLS 436
                L   +  +   +   +  L+  + L+LS NN+      +I +L G+++L  L L 
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLG 78

Query: 437 YNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
            N +  +I        +L+ + +S+N ++  + + +  +++L  + +S N + 
Sbjct: 79  RNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 42/276 (15%)

Query: 256 KSCSSLYRVRLESNELTGDLEQDFG-----IYPNLTYIDLSYNRLQGEVSPKW------G 304
            + +S+  + L  N L      +       I  N+T ++LS N L    S          
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAA 106

Query: 305 KCQKLTLLGLAGNSIGGKIPAEIGSL-----SQLVVLDLSSNQLSGEIPAQIGNL----- 354
               +T+L L  N    K  +E         + +  L+L  N L  +   ++  +     
Sbjct: 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166

Query: 355 TELSTLSLNGNDISGPIPEEIGALL-----NLDSLDLSMNRLSGPIPKQIGEL-----RD 404
             +++L+L GN+++     E+   L     ++ SLDLS N L      ++  +       
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 405 LRSLSLSQNNLNGTIPFQIGNLVGLQ---DLLDLSYNSLTGEIPAQ-------LEKLTSL 454
           + SL+L  N L+G     +  L         + L Y+ +      Q          +  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 455 QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
             ++ +   +       +S+++  ++      +L  
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 40/246 (16%), Positives = 88/246 (35%), Gaps = 40/246 (16%)

Query: 284 NLTYIDLSYNRLQGEVSPKWGK-----CQKLTLLGLAGNSIGGKIPAEIGSL-----SQL 333
            +T +DL +N    + S ++ +        +T L L GN +G K   E+  +     + +
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 334 VVLDLSSNQLSGEIPAQIGNL-----TELSTLSLNGNDISGPIPEEIGALL-----NLDS 383
             L+L  N L+ +  A++          +++L L+ N +      E+  +      ++ S
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 384 LDLSMNRLSGPIPKQIGELRD----LRSLSLSQNNLNGTIPFQIGNLV-GLQDL-----L 433
           L+L +N L GP  + +  L+D    L+++ L  + +      Q   L     ++     +
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAV----------NL 483
           D +   +       +  L    S      +L  +         + +              
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQ 349

Query: 484 SYNNLE 489
           +   L 
Sbjct: 350 TCKPLL 355

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 305 KCQKLTLLGLAGNSIG-GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLN 363
               +  L L  +    GK+        +L  L   +  L+  I A +  L +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGELRDLRSLSLSQN 413
            N +SG +        NL  L+LS N++      + + +L +L+SL L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 318 SIGGKIPAEIG--SLSQLVVLDLSSNQLS-GEIPAQIGNLTELSTLSLNGNDISGPIPEE 374
            +G +I  E+   + S +  L L +++ + G++        EL  LS     ++      
Sbjct: 2   EMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIAN 59

Query: 375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-- 432
           +  L  L  L+LS NR+SG +     +  +L  L+LS N +       I  L  L++L  
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKS 117

Query: 433 LDLSYNSLT 441
           LDL    +T
Sbjct: 118 LDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 282 YPNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS 340
             ++  + L  +R   G++     + ++L  L      +   I A +  L++L  L+LS 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 341 NQLSGEIPAQIGNLTELSTLSLNGNDISGP-IPEEIGALLNLDSLDLSMN 389
           N++SG +         L+ L+L+GN I      E +  L NL SLDL   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMNLSH 461
           D++ L L  +  N       G     ++L  L      LT  I A L KL  L+ + LS 
Sbjct: 18  DVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 462 NNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           N +SG +        +L  +NLS N ++
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 256 KSCSSLYRVRLESNELT-GDLEQDFGIYPNLTYIDLSYNRLQG-EVSPKWGKCQKLTLLG 313
           ++ S +  + L+++    G LE     +  L ++      L      PK     KL  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK---LNKLKKLE 70

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG-EIPAQIGNLTELSTLSLNGNDIS 368
           L+ N + G +         L  L+LS N++        +  L  L +L L   +++
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 12/142 (8%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDL 338
           GI  +   +DL    L       +    KLT L L  N +   + A +   L++L  L L
Sbjct: 32  GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGL 90

Query: 339 SSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGA---LLNLDSLDLSMNRLSGP 394
           ++NQL+  +P  +  +LT+L  L L GN +   +P   G    L  L  L L+ N+L   
Sbjct: 91  ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPS--GVFDRLTKLKELRLNTNQLQS- 145

Query: 395 IPKQI-GELRDLRSLSLSQNNL 415
           IP     +L +L++LSLS N L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLNL 381
           +P+ I + ++   LDL S  L+    A    LT+L+ L+L+ N +   +   +   L  L
Sbjct: 29  VPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTEL 85

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP---FQIGNLVGLQDLLDLSYN 438
            +L L+ N+L+         L  L  L L  N L  ++P   F    L  L++ L L+ N
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD--RLTKLKE-LRLNTN 141

Query: 439 SLTGEIPAQL-EKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 487
            L   IPA   +KLT+LQ+++LS N L      +   +  L  + L + N
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 50/180 (27%), Positives = 71/180 (39%), Gaps = 27/180 (15%)

Query: 188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF 247
           +D   L + S  L+    A    L+KLT L+L  N+L  L   V            F+  
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDD- 81

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQD-FGIYPNLTYIDLSYNRLQGEVSPKWGKC 306
                T L        + L +N+L   L    F     L  + L  N+L+   S  + + 
Sbjct: 82  ----LTELG------TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130

Query: 307 QKLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN 365
            KL  L L  N +   IPA     L+ L  L LS+NQL          L +L T++L GN
Sbjct: 131 TKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 305 KCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364
              +   L L G  I   I     +L Q   +D S N++  ++      L  L TL +N 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73

Query: 365 NDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGELRDLRSLSLSQN 413
           N I         AL +L  L L+ N L        +  L+ L  L + +N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 325 AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSL 384
           A+  +  +   LDL   ++   I      L +   +  + N+I   + +    L  L +L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 385 DLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI 444
            ++ NR+          L DL  L L+ N+L               +L DL         
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV--------------ELGDLDP------- 108

Query: 445 PAQLEKLTSLQSMNLSHN 462
              L  L SL  + +  N
Sbjct: 109 ---LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 17/142 (11%)

Query: 253 TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLL 312
               +      + L   ++   +E           ID S N +       +   ++L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 69

Query: 313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS--GEIPAQIGNLTELSTLSLNGNDISGP 370
            +  N I         +L  L  L L++N L   G++   + +L  L+ L +  N    P
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN----P 124

Query: 371 IPEE-------IGALLNLDSLD 385
           +  +       I  +  +  LD
Sbjct: 125 VTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ---DLLDLSYNSLTGEIPAQLEKLTSL 454
           Q       R L L    +       I NL       D +D S N +  ++      L  L
Sbjct: 14  QYTNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRL 66

Query: 455 QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           +++ +++N +         ++  L  + L+ N+L 
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 284 NLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL 343
               +DL   ++   +        +   +  + N I  K+      L +L  L +++N++
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI 76

Query: 344 SGEIPAQIGNLTELSTLSLNGNDISGP-IPEEIGALLNLDSLDLSMN 389
                     L +L+ L L  N +      + + +L +L  L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 86/568 (15%), Positives = 165/568 (29%), Gaps = 170/568 (29%)

Query: 1   MASQTKYPSL---AYVAALAVLL----CFCKASSLTETEALLKWKETL----VNQSIV-- 47
           + ++ + PS+    Y+     L      F K  +++  +  LK ++ L      ++++  
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 48  ------QSW-VIPASNSSNSTTPSPCR--WSGI-VCNDAGSVTEINLANTGLAGTLHDLD 97
                 ++W  +    S         +  W  +  CN   +V E+      L   L+ +D
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM------LQKLLYQID 210

Query: 98  FSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNF----LLQDNMLS 153
               PN         D S N        +L        +  LL  K +    L+  N+ +
Sbjct: 211 ----PNWTS----RSDHSSN-------IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 154 GRIPE--EIGNCKLL--TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPAN-- 207
            +      +  CK+L  T                        V    S   +  I  +  
Sbjct: 256 AKAWNAFNLS-CKILLTT--------------------RFKQVTDFLSAATTTHISLDHH 294

Query: 208 IGTLSKLTDLHLFINKL----SGLPPQVCK---------GGKLINFTASFNHF----SGP 250
             TL+      L +  L      LP +V              + +  A+++++       
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYI----------DLSYNRLQGEVS 300
           + T ++S      V LE  E    +     ++P   +I          D+  + +   V+
Sbjct: 355 LTTIIESS---LNV-LEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 301 PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360
               K  K +L+         K P E    S + +  +    L  E+  ++ N   L   
Sbjct: 410 ----KLHKYSLV--------EKQPKE----STISIPSI---YL--ELKVKLENEYALHRS 448

Query: 361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG-------------ELR---- 403
                     I +        DS DL    L       IG               R    
Sbjct: 449 ----------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS-YNS-LTGEIPAQLEKLTSLQS--MNL 459
           D R L   +  +         +   L  L  L  Y   +    P     + ++      +
Sbjct: 499 DFRFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 460 SHNNLSGEIPASLSSMLSLVAVNLSYNN 487
             N +  +          L+ + L   +
Sbjct: 556 EENLICSK-------YTDLLRIALMAED 576

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQ-IGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
               +     L  L + + Q    +  + +  L EL  L++  + +    P+       L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
             L+LS N L   +  +  +   L+ L LS N L+
Sbjct: 83  SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 7e-08
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 388 MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP-FQIGNLVGLQDLLDLSYNSLTGEIPA 446
               +      +    +L  L +        +    +  L  L+  L +  + L   +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLR-FVAP 73

Query: 447 Q-LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
                   L  +NLS N L   +       LSL  + LS N L
Sbjct: 74  DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE-IGALLNLDSLDLSMNRLSGPIPKQ 398
           +   + +    +     L+ L +        +    +  L  L +L +  + L    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 399 IGELRDLRSLSLSQNNL 415
                 L  L+LS N L
Sbjct: 76  FHFTPRLSRLNLSFNAL 92

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 329 SLSQLVVLDLSSNQLS-GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387
           + + +  L L + + + G+I         L  LSL    +       +  L  L  L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79

Query: 388 MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLT 441
            NR+ G +     +L +L  L+LS N L       +  L  L+ L  LDL    +T
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 302 KWGKCQKLTLLGLAGNSIG-GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360
           +      +  L L       GKI         L  L L +  L   + + +  L +L  L
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKL 76

Query: 361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP-IPKQIGELRDLRSLSLSQN 413
            L+ N I G +      L NL  L+LS N+L      + + +L  L+SL L   
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 283 PNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN 341
             +  + L   +   G++     +   L  L L    +   + + +  L +L  L+LS N
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSEN 81

Query: 342 QLSGEIPAQIGNLTELSTLSLNGNDISGP-IPEEIGALLNLDSLDLSMN 389
           ++ G +      L  L+ L+L+GN +      E +  L  L SLDL   
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 401 ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL--LDLSYNSLTGEIPAQLEKLTSLQSMN 458
               +R L L     N       G      +L  L L    L   + + L KL  L+ + 
Sbjct: 22  TPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLE 77

Query: 459 LSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
           LS N + G +      + +L  +NLS N L+
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 6/141 (4%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI-GALLNL 381
           +PA I + +Q  +L L  NQ++   P    +L  L  L L  N +   +P  +  +L  L
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQL 90

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT 441
             LDL  N+L+         L  L+ L +  N L   +P  I  L  L   L L  N L 
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH-LALDQNQLK 148

Query: 442 GEIPAQLEKLTSLQSMNLSHN 462
                  ++L+SL    L  N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 48/178 (26%)

Query: 188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF 247
           ++  +L +  NQ++   P    +L  L +L+L  N+L  LP  V            F+  
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV------------FDSL 87

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ 307
                T L        + L +N+LT      F    +L  + +  N+L            
Sbjct: 88  -----TQLT------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT----------- 125

Query: 308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN 365
                         ++P  I  L+ L  L L  NQL          L+ L+   L GN
Sbjct: 126 --------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406
           +PA I    +   L L+ N I+   P    +L+NL  L L  N+L          L  L 
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91

Query: 407 SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG 466
            L L  N L          LV L++L  +  N LT E+P  +E+LT L  + L  N L  
Sbjct: 92  VLDLGTNQLTVLPSAVFDRLVHLKEL-FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149

Query: 467 EIPASLSSMLSLVAVNLSYNN 487
               +   + SL    L + N
Sbjct: 150 IPHGAFDRLSSLTHAYL-FGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 38/137 (27%)

Query: 251 IPTSLKSCSSLYRVRLESNELTG-DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKL 309
           IP           + L  NEL     +  FG  P+L  ++L  N+L              
Sbjct: 27  IPLHTT------ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT------------- 67

Query: 310 TLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDI 367
                        I        S +  L L  N++  EI  ++   L +L TL+L  N I
Sbjct: 68  ------------GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114

Query: 368 SGPIPEEIGALLNLDSL 384
           S  +    G+  +L+SL
Sbjct: 115 SC-VMP--GSFEHLNSL 128

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 46/193 (23%)

Query: 330 LSQLVVLDLSSNQLSGEIPAQIG-----NLTELSTLSLNGNDISGPIPEEIGALL----N 380
           LS L  L+L+  +++      +          L  ++L    +    P  +  LL     
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLR 127

Query: 381 LDSLDLSMNRLSGPIPKQIGE-LRD----LRSLSLSQNNLNGTIPFQIGNLVGLQDL--- 432
              L L +N L     K + + L      + +L LS N L            G+  L   
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA---------AGVAVLMEG 178

Query: 433 ---------LDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML--- 476
                    L L +  L  E    + AQL++   LQ +N+++N        +L+      
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238

Query: 477 -SLVAVNLSYNNL 488
            SL  ++L +N L
Sbjct: 239 PSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 40/212 (18%), Positives = 69/212 (32%), Gaps = 46/212 (21%)

Query: 307 QKLTLLGLAGNSIGGKIPAEIGSLSQ--------LVVLDLSSNQLSGEIPAQIGN-LTEL 357
             L  L LAG  +    P +   ++         L  ++L+S QL       +       
Sbjct: 72  SSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 358 STLSLNGNDISGPIPEEIGALL-----NLDSLDLSMNRLSGPIPKQIGEL----RDLRSL 408
             L L  N +     +++  LL      + +L LS N L+      + E       +  L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 409 SLSQNNLNGTIPFQIGNLVGLQDL------------LDLSYNSLTGE----IPAQLEKLT 452
           SL            +G+  GL+ L            L+++YN         +     +  
Sbjct: 189 SLLHT--------GLGD-EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484
           SL+ ++L  N LS E    L  +         
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 55/236 (23%)

Query: 284 NLTYIDLSYNRLQGE---------VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGS-LSQL 333
           +L  ++L+  R+             S +      L  + LA   +       +     + 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGR----HALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 334 VVLDLSSNQLSGEIPAQIG-----NLTELSTLSLNGNDISGPIPEEIGALL----NLDSL 384
             L L  N L  E    +      +  +++TL L+ N ++      +   L    ++  L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 385 DLSMNRLSGPIPKQIGE-LRD---LRSLSLSQNNLNGTIPFQIGNLVGLQDL-------- 432
            L    L     + +   L     L+ L+++ N    T             L        
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT---------AALALARAAREHP 239

Query: 433 ----LDLSYNSLT-------GEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS 477
               L L +N L+        ++    E    +         +S      LS +  
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR 295

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDIS 368
           T L L GN     +P E+ +   L ++DLS+N++S  +  Q   N+T+L TL L+ N + 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 369 GPIPEEI-GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS 409
             IP      L +L  L L  N +S  +P+  G   DL +LS
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDISV-VPE--GAFNDLSALS 129

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT 441
             L L  N+ +  +PK++   + L  + LS N ++        N+  L  L  LSYN L 
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL-ILSYNRLR 91

Query: 442 GEIPAQL-EKLTSLQSMNLSHNNLS 465
             IP +  + L SL+ ++L  N++S
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDIS 115

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 59/365 (16%), Positives = 116/365 (31%), Gaps = 39/365 (10%)

Query: 162 NCKLLTLLALDGNFLSGPIPSSLGNLSD----LAVLAVASNQLSGEIPANIGTLSK---- 213
           +C+ +  L ++ +  S      L  L+     L VL     + +   P ++ T+++    
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 214 LTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG 273
           L  + +   ++  L         L  F     +    +P    +     ++        G
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 274 D--LEQDFGIYPNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGK-IPAEIGS 329
              +   F     +  +DL Y  L+ E       KC  L +L    N IG + +      
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQY 340

Query: 330 LSQLVVLDLSSNQLSGEIPAQIGNLTE------------LSTLSLNGNDISGPIPEEIGA 377
             QL  L +        +  + G +++            L  +++  +DI+    E IG 
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400

Query: 378 LL-NLDSLDLSMNRLSGPIPKQIGE---------LRDLRSLSLSQN--NLNGTIPFQIGN 425
            L NL    L +      I     +          + LR  +       L       IG 
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 426 LVGLQDLLDLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGE-IPASLSSMLSLVAVNL 483
                  + L Y   + E +        +LQ + +     S   I A+++ + SL  + +
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520

Query: 484 SYNNL 488
                
Sbjct: 521 QGYRA 525

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLD 382
           +P  I + +    LDL +N L          LT L+ L L GN +          L +L 
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 383 SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI-GNLVGLQDLLDLSYNSLT 441
            L+LS N+L         +L  L+ L+L+ N L  ++P  +   L  L+D L L  N L 
Sbjct: 80  YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKD-LRLYQNQLK 137

Query: 442 GEIPAQLEKLTSLQSMNLSHN 462
                  ++LTSLQ + L  N
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR 406
           +P  I   T    L L  N +          L +L  L L  N+L         +L  L 
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 407 SLSLSQNNLNGTIPFQI-GNLVGLQDLLDLSYNSLTGEIPAQL-EKLTSLQSMNLSHNNL 464
            L+LS N L  ++P  +   L  L++L  L+ N L   +P  + +KLT L+ + L  N L
Sbjct: 80  YLNLSTNQLQ-SLPNGVFDKLTQLKEL-ALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 43/180 (23%), Positives = 61/180 (33%), Gaps = 51/180 (28%)

Query: 188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF 247
           +    L + +N L          L+ LT L+L  NKL  LP  V            FN  
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV------------FNK- 74

Query: 248 SGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ 307
                TSL        + L +N+L       F     L  + L+ N+LQ           
Sbjct: 75  ----LTSLT------YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ----------- 113

Query: 308 KLTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGN 365
                          +P  +   L+QL  L L  NQL   +P  +   LT L  + L+ N
Sbjct: 114 --------------SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 16/100 (16%)

Query: 309 LTLLGLAGNSIGGKIPAEIGSL----SQLVVLDLSSNQLSGEIPAQIGN-------LTEL 357
           +    + G      +   +  +    + L  L++ SN +SG     +         L EL
Sbjct: 67  VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126

Query: 358 STLSLNGNDISGPIPEEIGALL----NLDSLDLSMNRLSG 393
             +      +   +  EI  +L     L        +   
Sbjct: 127 R-IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.98
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.98
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.8e-68  Score=579.40  Aligned_cols=461  Identities=33%  Similarity=0.514  Sum_probs=379.3

Q ss_pred             cCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccc---cCC-----
Q 035878           24 KASSLTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGT---LHD-----   95 (496)
Q Consensus        24 ~~~~~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~~~~~v~~L~L~~~~l~g~---~~~-----   95 (496)
                      +++..+|++||++||+++.|+..+++|+. +        +|||+|.||+|+ .++|++|+|+++++.|.   +++     
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~-~--------~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L   76 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKNLLPDWSS-N--------KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSL   76 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTTSSTTCCT-T--------SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred             ccCCHHHHHHHHHHHhhCCCcccccCCCC-C--------CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhcc
Confidence            45556899999999999988338999974 3        799999999998 79999999999998886   332     


Q ss_pred             -----------------CCCCCCCCCceeccc---------------------eEEccCCcccccCCCCC----------
Q 035878           96 -----------------LDFSSFPNLLRFDVY---------------------ELDVSRNNMTGGIDPRL----------  127 (496)
Q Consensus        96 -----------------~~l~~l~~L~~L~L~---------------------~L~Ls~n~l~~~ip~~~----------  127 (496)
                                       ..++.+++|++|+|+                     +||+++|.+.+.+|..+          
T Consensus        77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence                             256666666666665                     45555555444443321          


Q ss_pred             ---------------------------------------------------------------CCCC--------CC---
Q 035878          128 ---------------------------------------------------------------FPDD--------KN---  133 (496)
Q Consensus       128 ---------------------------------------------------------------~~~~--------~n---  133 (496)
                                                                                     ..+.        .|   
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC
Confidence                                                                           1110        00   


Q ss_pred             --------------------------CCCCCCCCCcEEEccCCcCcccCCcCCCCC-CCCCEEEccCCCCcccCCccccC
Q 035878          134 --------------------------QPMTGLLGLKNFLLQDNMLSGRIPEEIGNC-KLLTLLALDGNFLSGPIPSSLGN  186 (496)
Q Consensus       134 --------------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~  186 (496)
                                                .....+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..|++
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  316 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS  316 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence                                      011145667777777888888888877664 88888888888888888888888


Q ss_pred             CCCCceEecccCcCCcccCcc-CCCCCCCCEEECCCCCCcc-ccccccC---------------------------CCCC
Q 035878          187 LSDLAVLAVASNQLSGEIPAN-IGTLSKLTDLHLFINKLSG-LPPQVCK---------------------------GGKL  237 (496)
Q Consensus       187 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~-lp~~l~~---------------------------l~~L  237 (496)
                      +++|++|++++|.++|.+|.. +.++++|++|++++|++++ +|..+..                           +++|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            888888888888887777755 7777777777777777764 5544332                           4567


Q ss_pred             cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878          238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN  317 (496)
Q Consensus       238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  317 (496)
                      ++|++++|++++.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            77777777777778888888888999999999888888888888899999999999999888988989999999999999


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChh
Q 035878          318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK  397 (496)
Q Consensus       318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  397 (496)
                      ++++.+|..++.+++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|.
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887776


Q ss_pred             hhh----------------------------------------------------------------------CCCCCCE
Q 035878          398 QIG----------------------------------------------------------------------ELRDLRS  407 (496)
Q Consensus       398 ~l~----------------------------------------------------------------------~~~~L~~  407 (496)
                      .+.                                                                      .+++|++
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            542                                                                      2467899


Q ss_pred             EeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878          408 LSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN  487 (496)
Q Consensus       408 L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  487 (496)
                      |++++|+++|.+|..+++++.|+.| +|++|+++|.+|..++++++|++|||++|+++|.+|..+..+++|++||+++|+
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFIL-NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             EECcCCcccccCCHHHhccccCCEE-eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCC
Q 035878          488 LEGPLPDG  495 (496)
Q Consensus       488 l~g~ip~~  495 (496)
                      ++|+||..
T Consensus       716 l~g~iP~~  723 (768)
T 3rgz_A          716 LSGPIPEM  723 (768)
T ss_dssp             EEEECCSS
T ss_pred             ccccCCCc
Confidence            99999975

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-59  Score=502.45  Aligned_cols=426  Identities=21%  Similarity=0.299  Sum_probs=371.9

Q ss_pred             HHHHHHHHHHhcCCC--CC-------CCCCCCCCCCCCCCCCCCCCccc---cceeeCCCCCEEEEEcCCCCCccccCCC
Q 035878           29 TETEALLKWKETLVN--QS-------IVQSWVIPASNSSNSTTPSPCRW---SGIVCNDAGSVTEINLANTGLAGTLHDL   96 (496)
Q Consensus        29 ~~~~~ll~~k~~~~~--~~-------~l~~W~~~~~~~~~~~~~~~C~w---~gv~c~~~~~v~~L~L~~~~l~g~~~~~   96 (496)
                      .|++||.++|+++.+  ..       ...+|+.         .+|||.|   .||+|+..++|++|+|+++++.|.+|+ 
T Consensus        30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---------~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-   99 (636)
T 4eco_A           30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---------NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-   99 (636)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCCC------CCCCC---------SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-
T ss_pred             HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---------CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-
Confidence            799999999999853  11       1235543         2799999   999999889999999999999999998 


Q ss_pred             CCCCCCCCceeccceEEccCCcc---------------------------------------------------------
Q 035878           97 DFSSFPNLLRFDVYELDVSRNNM---------------------------------------------------------  119 (496)
Q Consensus        97 ~l~~l~~L~~L~L~~L~Ls~n~l---------------------------------------------------------  119 (496)
                      +++++++|++     |||++|.+                                                         
T Consensus       100 ~l~~L~~L~~-----L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A          100 AIGQLTELEV-----LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             GGGGCTTCCE-----EESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             HHhcCccceE-----EECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence            9999999994     55555543                                                         


Q ss_pred             ---------------------cccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc-----------------CCcCCC
Q 035878          120 ---------------------TGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR-----------------IPEEIG  161 (496)
Q Consensus       120 ---------------------~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~  161 (496)
                                           +| ||..         ++++++|++|+|++|.+++.                 +|..++
T Consensus       175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~---------l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          175 IKKSSRITLKDTQIGQLSNNITF-VSKA---------VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGG---------GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             cccccccchhhhhhccccCCCcc-CCHH---------HhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence                                 33 4443         78899999999999999986                 999999


Q ss_pred             --CCCCCCEEEccCCCCcccCCccccCCCCCceEecccCc-CCc-ccCccCCCC------CCCCEEECCCCCCccccc--
Q 035878          162 --NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQ-LSG-EIPANIGTL------SKLTDLHLFINKLSGLPP--  229 (496)
Q Consensus       162 --~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~lp~--  229 (496)
                        ++++|++|++++|.+.+.+|..|+++++|++|++++|+ ++| .+|..++++      ++|++|++++|+++.+|.  
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence              99999999999999999999999999999999999998 998 889888776      999999999999999998  


Q ss_pred             cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCC-ccEEEcccCcccccCCcCcCCCC-
Q 035878          230 QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN-LTYIDLSYNRLQGEVSPKWGKCQ-  307 (496)
Q Consensus       230 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~-  307 (496)
                      .+..+++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+...+ 
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence            89999999999999999999999 8899999999999999998 77888888999 999999999998 7788777655 


Q ss_pred             -CCCEEEccCCcccccCCcccC-------CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcC-C
Q 035878          308 -KLTLLGLAGNSIGGKIPAEIG-------SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGA-L  378 (496)
Q Consensus       308 -~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l  378 (496)
                       +|++|++++|.+++..|..+.       .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.. .
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence             899999999999999998888       7889999999999999544445667999999999999998 55554332 2


Q ss_pred             -------CCCCEEEccCCcCCCCChhhhh--CCCCCCEEeccCccCCccCChhccCCccccccccc------cCCcCCcc
Q 035878          379 -------LNLDSLDLSMNRLSGPIPKQIG--ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL------SYNSLTGE  443 (496)
Q Consensus       379 -------~~L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L------s~N~l~~~  443 (496)
                             ++|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++| ++      ++|++.+.
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L-~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF-GIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE-ECCSCBCTTCCBCCCC
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE-ECCCCcccccCccccc
Confidence                   28999999999999 7888776  89999999999999997 89999999999999 99      56788889


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878          444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  489 (496)
                      +|..+.++++|++|+|++|++ +.+|..+.  ++|+.||+++|++.
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            999999999999999999999 58888765  79999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.6e-57  Score=494.73  Aligned_cols=439  Identities=20%  Similarity=0.274  Sum_probs=365.9

Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCccc------------cceeeCCCCCEEEEEcCCCCCccccCC
Q 035878           28 LTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRW------------SGIVCNDAGSVTEINLANTGLAGTLHD   95 (496)
Q Consensus        28 ~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~w------------~gv~c~~~~~v~~L~L~~~~l~g~~~~   95 (496)
                      .+|++||++||+++.++    +|+.+++. + ...+++|.|            .||+|+..++|++|+|+++++.|.+|+
T Consensus       268 ~~d~~ALl~~k~~l~~~----~W~~~~~~-~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~  341 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGK----NWRYYSGT-I-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD  341 (876)
T ss_dssp             HHHHHHHHHHHHHTTGG----GCCCCCSS-C-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred             hHHHHHHHHHHHHcCCC----CCCcCCCc-c-cccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence            38999999999999654    89753210 0 011334999            999999889999999999999999998


Q ss_pred             CCCCCCCCCceeccceEEc-cCCcccccCCCCCCCC--------------------------------------------
Q 035878           96 LDFSSFPNLLRFDVYELDV-SRNNMTGGIDPRLFPD--------------------------------------------  130 (496)
Q Consensus        96 ~~l~~l~~L~~L~L~~L~L-s~n~l~~~ip~~~~~~--------------------------------------------  130 (496)
                       +++++++|+     +||| ++|.++|..|......                                            
T Consensus       342 -~l~~L~~L~-----~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~  415 (876)
T 4ecn_A          342 -AIGQLTELK-----VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK  415 (876)
T ss_dssp             -GGGGCTTCC-----EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred             -HHhccccce-----EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence             999999999     6777 7777766533221000                                            


Q ss_pred             --C---------------CC------CCCCCCCCCcEEEccCCcCcc-----------------cCCcCCC--CCCCCCE
Q 035878          131 --D---------------KN------QPMTGLLGLKNFLLQDNMLSG-----------------RIPEEIG--NCKLLTL  168 (496)
Q Consensus       131 --~---------------~n------~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~  168 (496)
                        .               .|      ..++++++|++|+|++|.+++                 .+|..++  ++++|++
T Consensus       416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~  495 (876)
T 4ecn_A          416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD  495 (876)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence              0               00      237889999999999999998                 3888888  9999999


Q ss_pred             EEccCCCCcccCCccccCCCCCceEecccCc-CCc-ccCccCCC-------CCCCCEEECCCCCCccccc--cccCCCCC
Q 035878          169 LALDGNFLSGPIPSSLGNLSDLAVLAVASNQ-LSG-EIPANIGT-------LSKLTDLHLFINKLSGLPP--QVCKGGKL  237 (496)
Q Consensus       169 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~-------l~~L~~L~L~~n~l~~lp~--~l~~l~~L  237 (496)
                      |+|++|.+.+.+|..|+++++|++|++++|+ ++| .+|..+++       +++|++|++++|+++.+|.  .+..+++|
T Consensus       496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L  575 (876)
T 4ecn_A          496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL  575 (876)
T ss_dssp             EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTC
T ss_pred             EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCC
Confidence            9999999999999999999999999999998 888 78875554       4599999999999999998  89999999


Q ss_pred             cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCC-ccEEEcccCcccccCCcCcCCCCC--CCEEEc
Q 035878          238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN-LTYIDLSYNRLQGEVSPKWGKCQK--LTLLGL  314 (496)
Q Consensus       238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~--L~~L~L  314 (496)
                      +.|++++|+++ .+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+.  |+.|++
T Consensus       576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred             CEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence            99999999998 778 8899999999999999998 77888888898 999999999998 77887777654  999999


Q ss_pred             cCCcccccCCccc---C--CCCCCCEEEccCCcCccccchh-hcCCCCCCEEeccCCcCccccchhhcCC--------CC
Q 035878          315 AGNSIGGKIPAEI---G--SLSQLVVLDLSSNQLSGEIPAQ-IGNLTELSTLSLNGNDISGPIPEEIGAL--------LN  380 (496)
Q Consensus       315 ~~n~l~~~~~~~l---~--~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------~~  380 (496)
                      ++|++++.+|...   .  .+++|++|++++|.++ .+|.. +..+++|++|+|++|+++ .+|..+...        ++
T Consensus       652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~  729 (876)
T 4ecn_A          652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL  729 (876)
T ss_dssp             CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred             cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence            9999988766432   2  3458999999999999 55555 458899999999999998 666654432        38


Q ss_pred             CCEEEccCCcCCCCChhhhh--CCCCCCEEeccCccCCccCChhccCCccccccccccC------CcCCccchhhhcCCC
Q 035878          381 LDSLDLSMNRLSGPIPKQIG--ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY------NSLTGEIPAQLEKLT  452 (496)
Q Consensus       381 L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~------N~l~~~~p~~l~~l~  452 (496)
                      |++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.| +|++      |++.+.+|..+.+++
T Consensus       730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L-~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF-GIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE-ECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE-ECCCCCCcccccccccChHHHhcCC
Confidence            999999999999 7788886  89999999999999996 78889999999999 9976      788889999999999


Q ss_pred             CCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878          453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       453 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                      +|++|+|++|++ +.+|..+.  ++|+.|||++|++..
T Consensus       807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            999999999999 68888765  699999999998853

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.5e-54  Score=470.54  Aligned_cols=406  Identities=35%  Similarity=0.526  Sum_probs=347.7

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCC-C--------CC-------CCCCCC
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPD-D--------KN-------QPMTGL  139 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~-~--------~n-------~~l~~l  139 (496)
                      ..++++|++++|.+.|.++. .  .+++|+     +|++++|.++|.+|..++.. .        .|       ..++++
T Consensus       246 l~~L~~L~Ls~n~l~~~~~~-~--~l~~L~-----~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          246 CTELKLLNISSNQFVGPIPP-L--PLKSLQ-----YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             CSSCCEEECCSSCCEESCCC-C--CCTTCC-----EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             CCCCCEEECCCCcccCccCc-c--ccCCCC-----EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            34688888888888877665 2  666666     56667777777777665432 1        11       235667


Q ss_pred             CCCcEEEccCCcCcccCCcC-CCCCCCCCEEEccCCCCcccCCccccCCC-CCceEecccCcCCcccCccCCC--CCCCC
Q 035878          140 LGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLALDGNFLSGPIPSSLGNLS-DLAVLAVASNQLSGEIPANIGT--LSKLT  215 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~--l~~L~  215 (496)
                      ++|++|++++|.++|.+|.. ++++++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|..+..  +++|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            77777777777777666655 67777777777777777777777777766 7777777777777777777666  78899


Q ss_pred             EEECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCc
Q 035878          216 DLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNR  294 (496)
Q Consensus       216 ~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  294 (496)
                      +|++++|++++ +|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            99999999987 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878          295 LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE  374 (496)
Q Consensus       295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  374 (496)
                      +++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             hc----------------------------------------------------------------------CCCCCCEE
Q 035878          375 IG----------------------------------------------------------------------ALLNLDSL  384 (496)
Q Consensus       375 ~~----------------------------------------------------------------------~l~~L~~L  384 (496)
                      +.                                                                      .+++|++|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence            43                                                                      34679999


Q ss_pred             EccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcC
Q 035878          385 DLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL  464 (496)
Q Consensus       385 ~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  464 (496)
                      |+++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|+.| ||++|+++|.+|..++++++|++||+++|++
T Consensus       638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L-dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL-DLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE-ECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE-ECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            999999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CcccchhhhcCCCCCEEeCcCCC-Cccc
Q 035878          465 SGEIPASLSSMLSLVAVNLSYNN-LEGP  491 (496)
Q Consensus       465 ~~~~p~~l~~l~~L~~L~ls~N~-l~g~  491 (496)
                      +|.+|.. ..+.++....+.+|+ ++|.
T Consensus       717 ~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          717 SGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             EEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             cccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            9999975 234455566677885 6764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.5e-50  Score=428.22  Aligned_cols=255  Identities=23%  Similarity=0.251  Sum_probs=118.3

Q ss_pred             CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcC-cCCCCCCCEEEc
Q 035878          236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGL  314 (496)
Q Consensus       236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~L~~L~L  314 (496)
                      +|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.. +..+++|++|++
T Consensus       279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            3333333333333 23333334444444444444444333333333444444444444433333222 344444444444


Q ss_pred             cCCcccccC--CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccch-hhcCCCCCCEEEccCCcC
Q 035878          315 AGNSIGGKI--PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE-EIGALLNLDSLDLSMNRL  391 (496)
Q Consensus       315 ~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l  391 (496)
                      ++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            444444332  33444444455555555544444444444455555555555554443332 244455555555555555


Q ss_pred             CCCChhhhhCCCCCCEEeccCccCCcc---CChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878          392 SGPIPKQIGELRDLRSLSLSQNNLNGT---IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI  468 (496)
Q Consensus       392 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  468 (496)
                      .+..|..+..+++|++|++++|++++.   .+..+..+++|++| ++++|++++..|..|.++++|++|++++|++++..
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL-VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE-ECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence            544444455555555555555555431   12334445555555 55555555444555555555555555555555555


Q ss_pred             chhhhcCCCCCEEeCcCCCCcccCC
Q 035878          469 PASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       469 p~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                      |..+..++.| +|++++|++++.+|
T Consensus       517 ~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          517 IEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             GGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             hhHhCccccc-EEECcCCcccccCH
Confidence            5555555555 55555555554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3e-49  Score=421.86  Aligned_cols=415  Identities=21%  Similarity=0.210  Sum_probs=347.7

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccc-------------------eEEccCCcccccCCCCCCCCC-----
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVY-------------------ELDVSRNNMTGGIDPRLFPDD-----  131 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~-------------------~L~Ls~n~l~~~ip~~~~~~~-----  131 (496)
                      +..+++|+++++.+++..+. +|.++++|++|+++                   +|++++|.+++..|..+..+.     
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CCcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            35789999999999866555 89999999977766                   677777777766665544332     


Q ss_pred             ---CC-------CCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCc--eEecccCc
Q 035878          132 ---KN-------QPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLA--VLAVASNQ  199 (496)
Q Consensus       132 ---~n-------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L~~n~  199 (496)
                         .|       ..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+  +|++++|.
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence               11       3355666666666666666653333344466677777766666655555566666655  55555554


Q ss_pred             CCc---------------------------------------------------------------------------cc
Q 035878          200 LSG---------------------------------------------------------------------------EI  204 (496)
Q Consensus       200 l~~---------------------------------------------------------------------------~~  204 (496)
                      +++                                                                           ..
T Consensus       191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence            443                                                                           22


Q ss_pred             CccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcccc-ccCCCC
Q 035878          205 PANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ-DFGIYP  283 (496)
Q Consensus       205 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~  283 (496)
                      +..|..+++|++|++++|+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus       271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            3346778999999999999999999999999999999999999988888999999999999999999877665 488999


Q ss_pred             CccEEEcccCcccccC--CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch-hhcCCCCCCEE
Q 035878          284 NLTYIDLSYNRLQGEV--SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA-QIGNLTELSTL  360 (496)
Q Consensus       284 ~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L  360 (496)
                      +|++|++++|.+++..  +..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+. .+..+++|++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            9999999999998776  77899999999999999999999999999999999999999999877654 48899999999


Q ss_pred             eccCCcCccccchhhcCCCCCCEEEccCCcCCCC---ChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccC
Q 035878          361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP---IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY  437 (496)
Q Consensus       361 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~  437 (496)
                      ++++|.+++..|..+..+++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..+..+++|++| ++++
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~  509 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV-DLSH  509 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE-ECCC
Confidence            9999999998999999999999999999999863   33568899999999999999999999999999999999 9999


Q ss_pred             CcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878          438 NSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       438 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                      |++++..|..+.++++| +|++++|++++..|..+..+++|+++++++|++++..|
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999 99999999999999999999999999999999988655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.6e-49  Score=418.72  Aligned_cols=398  Identities=23%  Similarity=0.212  Sum_probs=242.1

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      ..++++|+|+++.+++..+. .|.++++|+     +|++++|.+++..|..         |+++++|++|++++|.+++.
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~l~~i~~~~---------~~~l~~L~~L~Ls~n~l~~~   95 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSY-SFSNFSELQ-----WLDLSRCEIETIEDKA---------WHGLHHLSNLILTGNPIQSF   95 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTT-TTTTCTTCC-----EEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCCCC
T ss_pred             CCCcCEEECCCCCcCEeChh-hccCCccCc-----EEeCCCCcccccCHHH---------hhchhhcCEeECCCCccccc
Confidence            46799999999999876665 899999999     6778888888655554         56677777777777777766


Q ss_pred             CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCcccc-c----
Q 035878          156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLP-P----  229 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~lp-~----  229 (496)
                      .|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++++ .    
T Consensus        96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  175 (606)
T 3vq2_A           96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF  175 (606)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred             ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence            67777777777777777777776665667777777777777777764 45777777777777777777666532 2    


Q ss_pred             -----------------------cccCCCCCcEEecCCCcccC-------------------------------------
Q 035878          230 -----------------------QVCKGGKLINFTASFNHFSG-------------------------------------  249 (496)
Q Consensus       230 -----------------------~l~~l~~L~~L~l~~n~l~~-------------------------------------  249 (496)
                                             ..+...+|+.|++++|.+++                                     
T Consensus       176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~  255 (606)
T 3vq2_A          176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM  255 (606)
T ss_dssp             HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred             hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence                                   22222234444444443220                                     


Q ss_pred             -------------------------------------------CCCcccCCCCCCcEEEccCCCCCCcccc---------
Q 035878          250 -------------------------------------------PIPTSLKSCSSLYRVRLESNELTGDLEQ---------  277 (496)
Q Consensus       250 -------------------------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~~~---------  277 (496)
                                                                 .+| .+..+++|++|++++|.+ +.+|.         
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L  333 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSL  333 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEE
T ss_pred             hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCcccee
Confidence                                                       011 233334444555555444 23331         


Q ss_pred             -----------ccCCCCCccEEEcccCccccc--CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 035878          278 -----------DFGIYPNLTYIDLSYNRLQGE--VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS  344 (496)
Q Consensus       278 -----------~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  344 (496)
                                 .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.
T Consensus       334 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~  412 (606)
T 3vq2_A          334 TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK  412 (606)
T ss_dssp             EEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE
T ss_pred             eccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccC
Confidence                       122334444444444444433  23444445555555555555443 3345555566666666666665


Q ss_pred             cccc-hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCC-CChhhhhCCCCCCEEeccCccCCccCChh
Q 035878          345 GEIP-AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG-PIPKQIGELRDLRSLSLSQNNLNGTIPFQ  422 (496)
Q Consensus       345 ~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  422 (496)
                      +..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..
T Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence            5544 455566666666666666665566666666666666666666665 24555666666666666666666666666


Q ss_pred             ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCC-CCCEEeCcCCCCcccCC
Q 035878          423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip  493 (496)
                      +..+++|++| ++++|++++.+|..+.++++|++|++++|+++ .+|..+..++ +|++|++++|++.+..|
T Consensus       493 ~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          493 FDTLHRLQLL-NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTTCTTCCEE-ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             hcccccCCEE-ECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            6666666666 66666666656666666666666666666666 4555566654 36666666666665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-48  Score=427.55  Aligned_cols=411  Identities=21%  Similarity=0.206  Sum_probs=284.3

Q ss_pred             ccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEE
Q 035878           66 CRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNF  145 (496)
Q Consensus        66 C~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L  145 (496)
                      |.|..|.+ .+.++++|+|++|.+++..+. +|..+++|+     +|||++|.+.+.+++..        |+++++|++|
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~-----~LdLs~n~~~~~i~~~~--------f~~L~~L~~L   78 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQ-----LLELGSQYTPLTIDKEA--------FRNLPNLRIL   78 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCS-----EEEECTTCCCCEECTTT--------TSSCTTCCEE
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCe-----EEeCCCCCCccccCHHH--------hcCCCCCCEE
Confidence            56888888 778999999999999876666 899999999     78888998877885542        7888999999


Q ss_pred             EccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCcc--ccCCCCCceEecccCcCCcccC-ccCCCCCCCCEEECCCC
Q 035878          146 LLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSS--LGNLSDLAVLAVASNQLSGEIP-ANIGTLSKLTDLHLFIN  222 (496)
Q Consensus       146 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n  222 (496)
                      +|++|.+.+..|..|+++++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+ ..|+++++|++|++++|
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            99999999888999999999999999999998766665  8889999999999999887654 57888999999999999


Q ss_pred             CCcc-ccccccCC--CCCcEEecCCCcccCCCCcccCCC-----------------------------------------
Q 035878          223 KLSG-LPPQVCKG--GKLINFTASFNHFSGPIPTSLKSC-----------------------------------------  258 (496)
Q Consensus       223 ~l~~-lp~~l~~l--~~L~~L~l~~n~l~~~~p~~l~~l-----------------------------------------  258 (496)
                      .+++ .+..+..+  ++|+.|+++.|.+.+..|..+..+                                         
T Consensus       159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l  238 (844)
T 3j0a_A          159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL  238 (844)
T ss_dssp             CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred             cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence            8877 44444333  444444444444444333333222                                         


Q ss_pred             ---------------------------CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCE
Q 035878          259 ---------------------------SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL  311 (496)
Q Consensus       259 ---------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  311 (496)
                                                 ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence                                       35556666666665555555666666666666666666666666666666666


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc-------------------
Q 035878          312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP-------------------  372 (496)
Q Consensus       312 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------------------  372 (496)
                      |++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++...                   
T Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~  398 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK  398 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred             EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence            6666666666656666666666666666666665555556666666666666666543100                   


Q ss_pred             ---------------------hhhcCCCCCCEEEccCCcCCCCChh-hhhCCCCCCEEeccCccCC-----ccCChhccC
Q 035878          373 ---------------------EEIGALLNLDSLDLSMNRLSGPIPK-QIGELRDLRSLSLSQNNLN-----GTIPFQIGN  425 (496)
Q Consensus       373 ---------------------~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~-----~~~p~~~~~  425 (496)
                                           ..+..+++|++|++++|++++..+. .+..+++|++|++++|.++     +..+..+..
T Consensus       399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  478 (844)
T 3j0a_A          399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG  478 (844)
T ss_dssp             CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred             cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence                                 0112334444444444444432211 1223444555555555544     233345677


Q ss_pred             CccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          426 LVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       426 l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      +++|+.| +|++|++++..|..|.++++|++|+|++|++++..|..+.  ++|+.||+++|+++|.+|.
T Consensus       479 l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~  544 (844)
T 3j0a_A          479 LSHLQVL-YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD  544 (844)
T ss_dssp             BCCEECC-CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred             cccccEE-ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence            7888888 8888888888888888888899999999988877666665  7888888888888888875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.5e-49  Score=421.11  Aligned_cols=366  Identities=22%  Similarity=0.288  Sum_probs=334.4

Q ss_pred             eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCc---------------------------------------
Q 035878          111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNM---------------------------------------  151 (496)
Q Consensus       111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~---------------------------------------  151 (496)
                      .|+|++|.+.|.+|+.         ++++++|++|+|++|.                                       
T Consensus        85 ~L~L~~~~l~g~lp~~---------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~  155 (636)
T 4eco_A           85 GLSLEGFGASGRVPDA---------IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR  155 (636)
T ss_dssp             EEECTTSCCEEEECGG---------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred             EEEecCcccCCcCChH---------HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCch
Confidence            7999999999999987         7899999999999884                                       


Q ss_pred             ---------------------------------------CcccCCcCCCCCCCCCEEEccCCCCccc-------------
Q 035878          152 ---------------------------------------LSGRIPEEIGNCKLLTLLALDGNFLSGP-------------  179 (496)
Q Consensus       152 ---------------------------------------l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------------  179 (496)
                                                             ++| +|..++++++|++|+|++|.+++.             
T Consensus       156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence                                                   345 788899999999999999999986             


Q ss_pred             ----CCcccc--CCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCC-Ccc--ccccccCC------CCCcEEecCC
Q 035878          180 ----IPSSLG--NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINK-LSG--LPPQVCKG------GKLINFTASF  244 (496)
Q Consensus       180 ----~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~--lp~~l~~l------~~L~~L~l~~  244 (496)
                          +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++  +|..++.+      ++|++|++++
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence                999999  99999999999999999999999999999999999998 986  99888876      9999999999


Q ss_pred             CcccCCCCc--ccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCC-CCEEEccCCcccc
Q 035878          245 NHFSGPIPT--SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK-LTLLGLAGNSIGG  321 (496)
Q Consensus       245 n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~l~~  321 (496)
                      |+++ .+|.  .+.++++|++|++++|+++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            9999 8898  89999999999999999998898 8999999999999999999 78888999999 999999999999 


Q ss_pred             cCCcccCCCC--CCCEEEccCCcCccccchhhc-------CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878          322 KIPAEIGSLS--QLVVLDLSSNQLSGEIPAQIG-------NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS  392 (496)
Q Consensus       322 ~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  392 (496)
                      .+|..+..++  +|++|++++|.+++.+|..+.       .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            7888887765  899999999999999998888       8889999999999999544444566999999999999999


Q ss_pred             CCChhhh-hC-------CCCCCEEeccCccCCccCChhcc--CCccccccccccCCcCCccchhhhcCCCCCCEEEc---
Q 035878          393 GPIPKQI-GE-------LRDLRSLSLSQNNLNGTIPFQIG--NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL---  459 (496)
Q Consensus       393 ~~~~~~l-~~-------~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L---  459 (496)
                       .+|... ..       +++|++|++++|+++ .+|..+.  .+++|++| +|++|++++ +|..+.++++|++|+|   
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L-~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI-DLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE-ECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE-ECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence             565443 22       239999999999999 8898887  99999999 999999997 8999999999999999   


Q ss_pred             ---ccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCCC
Q 035878          460 ---SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG  495 (496)
Q Consensus       460 ---s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  495 (496)
                         ++|++.+.+|..+..+++|++|++++|++ +.||..
T Consensus       547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence               56889999999999999999999999999 899863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-47  Score=404.63  Aligned_cols=398  Identities=22%  Similarity=0.210  Sum_probs=300.6

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      +.+++.|+++++.+++..+. +|..+++|+     +||+++|.+++..|..         |+++++|++|++++|.+++.
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~i~~i~~~~---------~~~l~~L~~L~L~~n~l~~~   91 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSY-SFFSFPELQ-----VLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQSL   91 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTT-TTTTCSSCC-----EEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCCEE
T ss_pred             cccccEEEccCCccCccChh-HhhCCCCce-----EEECCCCcCCccCccc---------ccCchhCCEEeCcCCcCCcc
Confidence            45799999999999866555 899999998     6788888888544443         67778888888888888877


Q ss_pred             CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccc-cccccC
Q 035878          156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGL-PPQVCK  233 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~  233 (496)
                      .|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|+++++ |..+..
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  171 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred             CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence            77778888888888888888776555567788888888888887775 3577777888888888888877763 333444


Q ss_pred             CCCC----cEEecCCCcccCC-----------------------------------------------------------
Q 035878          234 GGKL----INFTASFNHFSGP-----------------------------------------------------------  250 (496)
Q Consensus       234 l~~L----~~L~l~~n~l~~~-----------------------------------------------------------  250 (496)
                      +++|    +.+++++|.+++.                                                           
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  251 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  251 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred             hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence            4444    4555555544332                                                           


Q ss_pred             ----------------------CCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc------------
Q 035878          251 ----------------------IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ------------  296 (496)
Q Consensus       251 ----------------------~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~------------  296 (496)
                                            +|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.            
T Consensus       252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~  329 (570)
T 2z63_A          252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKR  329 (570)
T ss_dssp             GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCE
T ss_pred             ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCE
Confidence                                  2233344555666666666555 244444444 5555555555444            


Q ss_pred             ---------ccCCcCcCCCCCCCEEEccCCcccccC--CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCC
Q 035878          297 ---------GEVSPKWGKCQKLTLLGLAGNSIGGKI--PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN  365 (496)
Q Consensus       297 ---------~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  365 (496)
                               +..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+++..+. +..+++|++|++++|
T Consensus       330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence                     22221  45667777777777776543  55667777888888888887754443 788888888888888


Q ss_pred             cCccccc-hhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC-ccCChhccCCccccccccccCCcCCcc
Q 035878          366 DISGPIP-EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN-GTIPFQIGNLVGLQDLLDLSYNSLTGE  443 (496)
Q Consensus       366 ~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~LL~Ls~N~l~~~  443 (496)
                      .+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++| ++++|++++.
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L-~l~~n~l~~~  485 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQL  485 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEE
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE-ECCCCccccC
Confidence            8886655 46788899999999999999888888999999999999999997 5789899999999999 9999999988


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      .|..+.++++|++|++++|++++..|..|..+++|+.|++++|+++|.+|.
T Consensus       486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            899999999999999999999988888899999999999999999999885

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.1e-47  Score=408.08  Aligned_cols=400  Identities=24%  Similarity=0.255  Sum_probs=244.4

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      ..++++|+|+++.+++..+. .|.++++|+     +|++++|.+++..|..         ++++++|++|++++|.+++.
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~l   88 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAA-NFTRYSQLT-----SLDVGFNTISKLEPEL---------CQKLPMLKVLNLQHNELSQL   88 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGG-GGGGGTTCS-----EEECCSSCCCCCCTTH---------HHHCTTCCEEECCSSCCCCC
T ss_pred             CCCCcEEECCCCCCCCcCHH-HHhCCCcCc-----EEECCCCccCccCHHH---------HhcccCcCEEECCCCccCcc
Confidence            45799999999999865544 789999999     5666777776554543         45566666666666666644


Q ss_pred             CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccc---cc
Q 035878          156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ---VC  232 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~---l~  232 (496)
                      .+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++++..   ..
T Consensus        89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  168 (680)
T 1ziw_A           89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF  168 (680)
T ss_dssp             CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred             ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence            444566666666666666666655555566666666666666666655555566666666666666666553332   12


Q ss_pred             CCCCCcEEecCCCcccCCCC---------------------------------------------------cccCCCCC-
Q 035878          233 KGGKLINFTASFNHFSGPIP---------------------------------------------------TSLKSCSS-  260 (496)
Q Consensus       233 ~l~~L~~L~l~~n~l~~~~p---------------------------------------------------~~l~~l~~-  260 (496)
                      .+++|++|++++|.+++..|                                                   ..+.+++. 
T Consensus       169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~  248 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT  248 (680)
T ss_dssp             TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred             ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence            33555555555555554444                                                   34433322 


Q ss_pred             -CcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccc-----cCCc----ccCCC
Q 035878          261 -LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG-----KIPA----EIGSL  330 (496)
Q Consensus       261 -L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~----~l~~l  330 (496)
                       |++|++++|.+++..+..++.+++|++|++++|.+.+..|..+..+++|++|++++|...+     .+|.    .+..+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence             5555555555555555555555556666666655555555555555566666655543332     1222    45666


Q ss_pred             CCCCEEEccCCcCccccchhhcCCCCCCEEeccCCc----------------------------CccccchhhcCCCCCC
Q 035878          331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND----------------------------ISGPIPEEIGALLNLD  382 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~----------------------------l~~~~~~~~~~l~~L~  382 (496)
                      ++|++|++++|.+++..+..+..+++|++|++++|.                            +++..|..+..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            777777777777776666666666666666665543                            2233334444445555


Q ss_pred             EEEccCCcCCCCCh-hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC--ccchhhhcCCCCCCEEEc
Q 035878          383 SLDLSMNRLSGPIP-KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT--GEIPAQLEKLTSLQSMNL  459 (496)
Q Consensus       383 ~L~Ls~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~--~~~p~~l~~l~~L~~L~L  459 (496)
                      +|++++|++.+.+| ..+.++++|++|++++|++.+..+..+..+++|+++ ++++|.++  +.+|..+.++++|++|++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL-MLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE-ECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc-hhccccccccccCCcccccCCCCCEEEC
Confidence            55555555544333 344455555555555555554445555555555555 56666554  456777888888888888


Q ss_pred             ccCcCCcccchhhhcCCCCCEEeCcCCCCccc
Q 035878          460 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP  491 (496)
Q Consensus       460 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  491 (496)
                      ++|++++..|..|..+++|++|++++|++++.
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence            88888877777788888888888888888753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.3e-48  Score=406.75  Aligned_cols=400  Identities=22%  Similarity=0.245  Sum_probs=290.8

Q ss_pred             CccccceeeCC------------CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCC
Q 035878           65 PCRWSGIVCND------------AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDK  132 (496)
Q Consensus        65 ~C~w~gv~c~~------------~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~  132 (496)
                      .|.|.|+ |+.            ..++++|+++++.+++..+. .|..+++|+     +|++++|.+++..|..      
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~-----~L~Ls~n~i~~~~~~~------   69 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQ-----VLILKSSRINTIEGDA------   69 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCC-----EEECTTSCCCEECTTT------
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCccc-----EEECCCCCcCccChhh------
Confidence            4889888 752            24799999999999876666 899999999     7888999999766655      


Q ss_pred             CCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccC-ccCCC
Q 035878          133 NQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIP-ANIGT  210 (496)
Q Consensus       133 n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~  210 (496)
                         |+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+
T Consensus        70 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           70 ---FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             ---TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             ---ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence               6888999999999999998777778999999999999999886 457788899999999999998544554 57888


Q ss_pred             CCCCCEEECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCCcc-cCCCCCCcEEEccCCCCCCcc--c----------
Q 035878          211 LSKLTDLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIPTS-LKSCSSLYRVRLESNELTGDL--E----------  276 (496)
Q Consensus       211 l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~----------  276 (496)
                      +++|++|++++|++++ +|..+..+++|++|+++.|.+.. +|.. +..+++|++|++++|++++..  +          
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  225 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM  225 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence            9999999999999888 77777776666666666665542 2222 234556666666666555421  0          


Q ss_pred             -------------------cccCCC-------------------------------------------------------
Q 035878          277 -------------------QDFGIY-------------------------------------------------------  282 (496)
Q Consensus       277 -------------------~~~~~l-------------------------------------------------------  282 (496)
                                         ..+..+                                                       
T Consensus       226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~  305 (549)
T 2z81_A          226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV  305 (549)
T ss_dssp             CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred             cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence                               000111                                                       


Q ss_pred             ----CCccEEEcccCcccccCCcCc-CCCCCCCEEEccCCcccccCC---cccCCCCCCCEEEccCCcCccccc--hhhc
Q 035878          283 ----PNLTYIDLSYNRLQGEVSPKW-GKCQKLTLLGLAGNSIGGKIP---AEIGSLSQLVVLDLSSNQLSGEIP--AQIG  352 (496)
Q Consensus       283 ----~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~  352 (496)
                          ++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..+.
T Consensus       306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  384 (549)
T 2z81_A          306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL  384 (549)
T ss_dssp             HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred             hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence                23444444444443 233333 356677777777777766543   235666777777777777764322  3466


Q ss_pred             CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccc
Q 035878          353 NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL  432 (496)
Q Consensus       353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  432 (496)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+  .++|++|++++|++++.+    ..+++|++|
T Consensus       385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L  456 (549)
T 2z81_A          385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQEL  456 (549)
T ss_dssp             GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred             cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEE
Confidence            6777777777777776 566666677777777777777763 33322  256777777777777542    478899999


Q ss_pred             ccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878          433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       433 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                       ++++|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|++|++++|+++|.+|
T Consensus       457 -~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          457 -YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -ECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -ECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             99999999 6776 5679999999999999999989999999999999999999998876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.2e-46  Score=402.14  Aligned_cols=173  Identities=25%  Similarity=0.285  Sum_probs=93.9

Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCccccc-hhhcCCCCCCEEeccCCcCc--------------------------ccc
Q 035878          319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIP-AQIGNLTELSTLSLNGNDIS--------------------------GPI  371 (496)
Q Consensus       319 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~--------------------------~~~  371 (496)
                      +++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|+++                          +.+
T Consensus       393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence            333334444455555555555555544333 33444444444444444433                          234


Q ss_pred             chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCC--------hhccCCccccccccccCCcCCcc
Q 035878          372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP--------FQIGNLVGLQDLLDLSYNSLTGE  443 (496)
Q Consensus       372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~LL~Ls~N~l~~~  443 (496)
                      |..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+        ..+..+++|++| ++++|+++..
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L-~L~~N~l~~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL-NLESNGFDEI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE-ECCSSCCCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE-ECCCCCCCCC
Confidence            5555566666666666666665555556666666666666666653211        124555666666 6666666632


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccC
Q 035878          444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL  492 (496)
Q Consensus       444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  492 (496)
                      .+..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            2334666666666666666666555555566666666666666666544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-46  Score=399.10  Aligned_cols=374  Identities=21%  Similarity=0.225  Sum_probs=286.7

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      ..++++|+++++.+++..+. .|.++++|+     +|++++|.+++..|..         |+++++|++|++++|.+++.
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~-----~L~Ls~n~l~~~~p~~---------~~~l~~L~~L~L~~n~l~~~  119 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDK-AWHGLHHLS-----NLILTGNPIQSFSPGS---------FSGLTSLENLVAVETKLASL  119 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTT-TTTTCTTCC-----EEECTTCCCCCCCTTS---------STTCTTCCEEECTTSCCCCS
T ss_pred             CccCcEEeCCCCcccccCHH-HhhchhhcC-----EeECCCCcccccChhh---------cCCcccCCEEEccCCccccc
Confidence            45789999999998865555 788888888     6778888888666665         45566666666666666655


Q ss_pred             CCcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccCccCC-------------------------
Q 035878          156 IPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIG-------------------------  209 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-------------------------  209 (496)
                      .+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..|..++                         
T Consensus       120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~  199 (606)
T 3vq2_A          120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ  199 (606)
T ss_dssp             SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred             cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence            55556666666666666666554 3455666666666666666555543332111                         


Q ss_pred             --------------------------------------------------------------------------------
Q 035878          210 --------------------------------------------------------------------------------  209 (496)
Q Consensus       210 --------------------------------------------------------------------------------  209 (496)
                                                                                                      
T Consensus       200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~  279 (606)
T 3vq2_A          200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV  279 (606)
T ss_dssp             TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred             cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence                                                                                            


Q ss_pred             ---CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCc--------------------ccCCCCCCcEEEc
Q 035878          210 ---TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPT--------------------SLKSCSSLYRVRL  266 (496)
Q Consensus       210 ---~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~--------------------~l~~l~~L~~L~L  266 (496)
                         .+++|++|++++|.+..+| .+..+++|++|++++|.+ +.+|.                    .+..+++|++|++
T Consensus       280 ~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  357 (606)
T 3vq2_A          280 KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDL  357 (606)
T ss_dssp             SCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred             ccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence               1122223333333332233 333444555555555544 23331                    3556778888888


Q ss_pred             cCCCCCCc--cccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcC
Q 035878          267 ESNELTGD--LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQL  343 (496)
Q Consensus       267 ~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l  343 (496)
                      ++|.+++.  .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+
T Consensus       358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            88888765  36778899999999999999986 56889999999999999999998877 6899999999999999999


Q ss_pred             ccccchhhcCCCCCCEEeccCCcCcc-ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChh
Q 035878          344 SGEIPAQIGNLTELSTLSLNGNDISG-PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ  422 (496)
Q Consensus       344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  422 (496)
                      ++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..+.++++|++|++++|++++.+|..
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  516 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH  516 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred             CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence            99899999999999999999999997 47889999999999999999999988999999999999999999999999999


Q ss_pred             ccCCccccccccccCCcCCccchhhhcCCC-CCCEEEcccCcCCcccc
Q 035878          423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLT-SLQSMNLSHNNLSGEIP  469 (496)
Q Consensus       423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p  469 (496)
                      +.++++|++| ++++|+++ .+|..+..++ +|++|++++|++....+
T Consensus       517 ~~~l~~L~~L-~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          517 YNQLYSLSTL-DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTTCTTCCEE-ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ccCCCcCCEE-ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999999 99999999 7888899987 59999999999987544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1e-46  Score=411.29  Aligned_cols=367  Identities=22%  Similarity=0.318  Sum_probs=327.9

Q ss_pred             cceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEc-cCCcCccc--------------------------------
Q 035878          109 VYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLL-QDNMLSGR--------------------------------  155 (496)
Q Consensus       109 L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L-~~n~l~~~--------------------------------  155 (496)
                      +..|+|++|.+.|.+|+.         ++++++|++|+| ++|.++|.                                
T Consensus       325 V~~L~Ls~~~L~G~ip~~---------l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~  395 (876)
T 4ecn_A          325 VTGLSLAGFGAKGRVPDA---------IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD  395 (876)
T ss_dssp             EEEEECTTTCCEEEECGG---------GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred             EEEEECccCCCCCcCchH---------HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence            338999999999999987         789999999999 77755443                                


Q ss_pred             --------------------------------------------CCcCCCCCCCCCEEEccCCCCcc-------------
Q 035878          156 --------------------------------------------IPEEIGNCKLLTLLALDGNFLSG-------------  178 (496)
Q Consensus       156 --------------------------------------------~~~~l~~l~~L~~L~Ls~n~l~~-------------  178 (496)
                                                                  +|..|+++++|++|+|++|.+++             
T Consensus       396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n  475 (876)
T 4ecn_A          396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD  475 (876)
T ss_dssp             GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence                                                        78889999999999999999998             


Q ss_pred             ----cCCcccc--CCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCC-Ccc--ccccccCC-------CCCcEEec
Q 035878          179 ----PIPSSLG--NLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINK-LSG--LPPQVCKG-------GKLINFTA  242 (496)
Q Consensus       179 ----~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~--lp~~l~~l-------~~L~~L~l  242 (496)
                          .+|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++  +|..++.+       ++|++|++
T Consensus       476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence                4999988  99999999999999999999999999999999999998 886  88766555       49999999


Q ss_pred             CCCcccCCCCc--ccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCC-CCEEEccCCcc
Q 035878          243 SFNHFSGPIPT--SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQK-LTLLGLAGNSI  319 (496)
Q Consensus       243 ~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~l  319 (496)
                      ++|+++ .+|.  .+.++++|++|++++|.++ .+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+
T Consensus       556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             eCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence            999999 8888  8999999999999999999 777 8999999999999999999 88888999999 99999999999


Q ss_pred             cccCCcccCCCCC--CCEEEccCCcCccccchh---hc--CCCCCCEEeccCCcCccccchhh-cCCCCCCEEEccCCcC
Q 035878          320 GGKIPAEIGSLSQ--LVVLDLSSNQLSGEIPAQ---IG--NLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRL  391 (496)
Q Consensus       320 ~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l  391 (496)
                      + .+|..+..++.  |+.|++++|++.+.+|..   +.  .+++|++|++++|+++ .+|..+ ..+++|++|++++|++
T Consensus       632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred             C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence            9 78888877654  999999999999876543   22  3458999999999999 566655 4899999999999999


Q ss_pred             CCCChhhhhC--------CCCCCEEeccCccCCccCChhcc--CCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878          392 SGPIPKQIGE--------LRDLRSLSLSQNNLNGTIPFQIG--NLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH  461 (496)
Q Consensus       392 ~~~~~~~l~~--------~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  461 (496)
                      + .+|..+..        +++|++|+|++|+++ .+|..+.  .+++|+.| +|++|++++ +|..+.++++|++|+|++
T Consensus       710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L-~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM-DVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE-ECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE-EeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence            9 56654433        339999999999999 8898887  99999999 999999997 899999999999999976


Q ss_pred             ------CcCCcccchhhhcCCCCCEEeCcCCCCcccCCCC
Q 035878          462 ------NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG  495 (496)
Q Consensus       462 ------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  495 (496)
                            |++.+.+|..|..+++|+.|+|++|++ |.||..
T Consensus       786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence                  889999999999999999999999999 899963

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-45  Score=380.54  Aligned_cols=359  Identities=21%  Similarity=0.202  Sum_probs=236.9

Q ss_pred             eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC-CcCCCCCCCCCEEEccCCCCcccCCccccCCCC
Q 035878          111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI-PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSD  189 (496)
Q Consensus       111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  189 (496)
                      +||+++|.+++..|..         |+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++
T Consensus        34 ~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           34 YVDLSLNSIAELNETS---------FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             EEECCSSCCCEECTTT---------TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             EEEecCCccCcCChhH---------hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            7888888888666655         678888888888888887554 567888888888888888888778888888888


Q ss_pred             CceEecccCcCCcccCcc--CCCCCCCCEEECCCCCCccc-ccc-ccCCCCCcEEecCCCcccCCCCcccCCC--CCCcE
Q 035878          190 LAVLAVASNQLSGEIPAN--IGTLSKLTDLHLFINKLSGL-PPQ-VCKGGKLINFTASFNHFSGPIPTSLKSC--SSLYR  263 (496)
Q Consensus       190 L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~l-p~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~  263 (496)
                      |++|++++|.+++..+..  +..+++|++|++++|+++++ |.. +..+++|++|++++|++++..+..+..+  .+|+.
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            888888888888755544  78888888888888888885 544 6678888888888888887777776655  57778


Q ss_pred             EEccCCCCCCcccccc--------CCCCCccEEEcccCcccccCCcCcCCC---CCCCEEEccCCcccccCCcccCCCCC
Q 035878          264 VRLESNELTGDLEQDF--------GIYPNLTYIDLSYNRLQGEVSPKWGKC---QKLTLLGLAGNSIGGKIPAEIGSLSQ  332 (496)
Q Consensus       264 L~L~~n~l~~~~~~~~--------~~l~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~l~~  332 (496)
                      |++++|.+.+..+..+        ..+++|++|++++|.+++..|..+...   ++|+.|++++|...+....       
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------  257 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------  257 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------
Confidence            8888887776544322        245667777777777776655554332   6677777776655432110       


Q ss_pred             CCEEEccCCcCccccchhhc--CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEec
Q 035878          333 LVVLDLSSNQLSGEIPAQIG--NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSL  410 (496)
Q Consensus       333 L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L  410 (496)
                             .+.+.+..+..+.  ..++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++
T Consensus       258 -------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  330 (455)
T 3v47_A          258 -------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL  330 (455)
T ss_dssp             -------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence                   0011111111111  1245666666666666555555666666666666666666555555666666666666


Q ss_pred             cCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878          411 SQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       411 s~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                      ++|.+++..|..+..+++|++| ++++|++++..|..+.++++|++|++++|++++..+..|..+++|++|++++|+++|
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVL-DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccCCcChhHhcCcccCCEE-ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            6666655555556666666666 666666665555566666666666666666665444455566666666666666666


Q ss_pred             cCC
Q 035878          491 PLP  493 (496)
Q Consensus       491 ~ip  493 (496)
                      .+|
T Consensus       410 ~~~  412 (455)
T 3v47_A          410 SCP  412 (455)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-45  Score=386.83  Aligned_cols=390  Identities=21%  Similarity=0.190  Sum_probs=322.9

Q ss_pred             EEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCC
Q 035878           82 INLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIG  161 (496)
Q Consensus        82 L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~  161 (496)
                      ++.++.+++ .+|. .+.  ++++     +||+++|.+++..+..         |.++++|++|++++|.+++..+..|+
T Consensus        12 ~~c~~~~l~-~ip~-~l~--~~l~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A           12 YQCMELNFY-KIPD-NLP--FSTK-----NLDLSFNPLRHLGSYS---------FFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             EECCSSCCS-SCCS-SSC--SSCC-----EEECCSCCCCEECTTT---------TTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             EEeCCCCcc-ccCC-Ccc--cccc-----EEEccCCccCccChhH---------hhCCCCceEEECCCCcCCccCccccc
Confidence            455555554 3443 332  3444     8999999998655544         78999999999999999998889999


Q ss_pred             CCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc--ccccccCCCCCcE
Q 035878          162 NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG--LPPQVCKGGKLIN  239 (496)
Q Consensus       162 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~  239 (496)
                      ++++|++|++++|.+++..|..|.++++|++|++++|++++..+..++++++|++|++++|.+++  +|..+.++++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            99999999999999998888999999999999999999997666679999999999999999997  7899999999999


Q ss_pred             EecCCCcccCCCCcccCCCCCC----cEEEccCCCCCCccccc-------------------------------------
Q 035878          240 FTASFNHFSGPIPTSLKSCSSL----YRVRLESNELTGDLEQD-------------------------------------  278 (496)
Q Consensus       240 L~l~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~~~~-------------------------------------  278 (496)
                      |++++|++++..+..+..+++|    +.+++++|.+.+..+..                                     
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999998877778777777    78888888766543332                                     


Q ss_pred             --------------------------------------------cCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEc
Q 035878          279 --------------------------------------------FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL  314 (496)
Q Consensus       279 --------------------------------------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  314 (496)
                                                                  +..+++|++|++++|.+. .+|..+..+ +|++|++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l  311 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLEL  311 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEE
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEee
Confidence                                                        334566777777777776 456666655 6666666


Q ss_pred             cCCcccccCCcc-c-------------------CCCCCCCEEEccCCcCcccc--chhhcCCCCCCEEeccCCcCccccc
Q 035878          315 AGNSIGGKIPAE-I-------------------GSLSQLVVLDLSSNQLSGEI--PAQIGNLTELSTLSLNGNDISGPIP  372 (496)
Q Consensus       315 ~~n~l~~~~~~~-l-------------------~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~  372 (496)
                      ++|.+. .+|.. +                   ..+++|++|++++|.+++..  +..+..+++|++|++++|.+++..+
T Consensus       312 ~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  390 (570)
T 2z63_A          312 VNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS  390 (570)
T ss_dssp             ESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred             ccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence            666655 22221 1                   45678888888888887553  6778889999999999999886544


Q ss_pred             hhhcCCCCCCEEEccCCcCCCCCh-hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC-ccchhhhcC
Q 035878          373 EEIGALLNLDSLDLSMNRLSGPIP-KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEK  450 (496)
Q Consensus       373 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~-~~~p~~l~~  450 (496)
                       .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..|..+..+++|++| ++++|+++ +.+|..+..
T Consensus       391 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          391 -NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             -EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTT
T ss_pred             -cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE-ECcCCcCccccchhhhhc
Confidence             48899999999999999987665 568899999999999999999999999999999999 99999998 578999999


Q ss_pred             CCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          451 LTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       451 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      +++|++|++++|++++..|..|..+++|++|++++|++++.+|.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            99999999999999998899999999999999999999987664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=384.93  Aligned_cols=389  Identities=24%  Similarity=0.261  Sum_probs=281.9

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      ..++++|+++++.+++..+. .|..+++|+     +|++++|.+++..|..         |+++++|++|+|++|.++ .
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~N~l~-~   83 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTS-DILSLSKLR-----ILIISHNRIQYLDISV---------FKFNQELEYLDLSHNKLV-K   83 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHH-HHTTCTTCC-----EEECCSSCCCEEEGGG---------GTTCTTCCEEECCSSCCC-E
T ss_pred             cccccEEECCCCcccccChh-hcccccccc-----EEecCCCccCCcChHH---------hhcccCCCEEecCCCcee-e
Confidence            36788888888887755444 677777777     6777888887655654         677788888888888887 4


Q ss_pred             CCcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccCccCCCCCCC--CEEECCCCCC--cc-ccc
Q 035878          156 IPEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL--TDLHLFINKL--SG-LPP  229 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~-lp~  229 (496)
                      +|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+ .|.
T Consensus        84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~  158 (520)
T 2z7x_B           84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE  158 (520)
T ss_dssp             EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred             cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence            4544  77888888888888876 467788888888888888888775   345556666  8888888877  33 444


Q ss_pred             cccC--------------------------CCCCcEEecCCCc-------ccCCCCcccCCCCCCcEEEccCCCCCCccc
Q 035878          230 QVCK--------------------------GGKLINFTASFNH-------FSGPIPTSLKSCSSLYRVRLESNELTGDLE  276 (496)
Q Consensus       230 ~l~~--------------------------l~~L~~L~l~~n~-------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  276 (496)
                      .+..                          +++|+.+++++|.       +.+.+| .+..+++|+.|++++|.+++..+
T Consensus       159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~  237 (520)
T 2z7x_B          159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF  237 (520)
T ss_dssp             TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH
T ss_pred             cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH
Confidence            4433                          3444444444443       333222 33444444444444443332111


Q ss_pred             cccC---CCCCccEEEcccCcccccCCcCc-----CCCCC--------------------------CCEEEccCCccccc
Q 035878          277 QDFG---IYPNLTYIDLSYNRLQGEVSPKW-----GKCQK--------------------------LTLLGLAGNSIGGK  322 (496)
Q Consensus       277 ~~~~---~l~~L~~L~ls~n~l~~~~~~~~-----~~~~~--------------------------L~~L~L~~n~l~~~  322 (496)
                      ..+.   ..++|++|++++|.++|.+|..+     ..+++                          |+.|++++|.+.+.
T Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~  317 (520)
T 2z7x_B          238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM  317 (520)
T ss_dssp             HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence            1100   12356666666666665555555     44444                          55555555554322


Q ss_pred             CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcc--ccchhhcCCCCCCEEEccCCcCCCCChhh-h
Q 035878          323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG--PIPEEIGALLNLDSLDLSMNRLSGPIPKQ-I  399 (496)
Q Consensus       323 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-l  399 (496)
                      .  .+..+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +
T Consensus       318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence            1  12678999999999999998889999999999999999999996  56778999999999999999999866654 7


Q ss_pred             hCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh-hhcCCCC
Q 035878          400 GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS-LSSMLSL  478 (496)
Q Consensus       400 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L  478 (496)
                      ..+++|++|++++|++++.+|..+.  ++|++| ++++|+++ .+|..+..+++|++|++++|++++ +|.. |..+++|
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L-~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  470 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL-DLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSL  470 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEE-ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCccCCEEECcCCCCCcchhhhhc--ccCCEE-ECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcc
Confidence            8889999999999999988887664  789999 99999999 889888899999999999999994 5654 8999999


Q ss_pred             CEEeCcCCCCcccCC
Q 035878          479 VAVNLSYNNLEGPLP  493 (496)
Q Consensus       479 ~~L~ls~N~l~g~ip  493 (496)
                      ++|++++|++++..|
T Consensus       471 ~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          471 QKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             cEEECcCCCCcccCC
Confidence            999999999988653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4e-45  Score=403.69  Aligned_cols=407  Identities=21%  Similarity=0.180  Sum_probs=308.4

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCC--------CC---------CCCCC
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDD--------KN---------QPMTG  138 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~--------~n---------~~l~~  138 (496)
                      -.+++.|+|+++...+.+++.+|.++++|+     +|+|++|.+.+..|..+..+.        .|         ..+++
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLR-----ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCC-----EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCC-----EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            356788888888777777655788888888     556666666655555421111        00         01444


Q ss_pred             CCCCcEEEccCCcCcccCC-cCCCCCCCCCEEEccCCCCcccCCccccCC--CCCceEecccCcCCcccCccCCCCCC--
Q 035878          139 LLGLKNFLLQDNMLSGRIP-EEIGNCKLLTLLALDGNFLSGPIPSSLGNL--SDLAVLAVASNQLSGEIPANIGTLSK--  213 (496)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~--  213 (496)
                      +++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+..+..+  ++|++|++++|.+.+..|..++.+++  
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            5555555555555544332 344555555555555555554444444444  45555555555555555555554444  


Q ss_pred             ----CCEEECCCCCCcc-ccccccC--------------------------------------CCCCcEEecCCCcccCC
Q 035878          214 ----LTDLHLFINKLSG-LPPQVCK--------------------------------------GGKLINFTASFNHFSGP  250 (496)
Q Consensus       214 ----L~~L~L~~n~l~~-lp~~l~~--------------------------------------l~~L~~L~l~~n~l~~~  250 (496)
                          |++|++++|.+++ ++..+..                                      .++|+.|++++|.+.+.
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                8888888887664 3322211                                      26799999999999988


Q ss_pred             CCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCC
Q 035878          251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL  330 (496)
Q Consensus       251 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  330 (496)
                      .|..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            89999999999999999999999889999999999999999999998889999999999999999999998888889999


Q ss_pred             CCCCEEEccCCcCcccc----------------------------------------chhhcCCCCCCEEeccCCcCccc
Q 035878          331 SQLVVLDLSSNQLSGEI----------------------------------------PAQIGNLTELSTLSLNGNDISGP  370 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~~~----------------------------------------~~~l~~l~~L~~L~Ls~n~l~~~  370 (496)
                      ++|++|++++|.+++..                                        +..+..+++|++|++++|++++.
T Consensus       362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~  441 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC  441 (844)
T ss_dssp             CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred             CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence            99999999999876421                                        11244789999999999999865


Q ss_pred             cch-hhcCCCCCCEEEccCCcCC-----CCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccc
Q 035878          371 IPE-EIGALLNLDSLDLSMNRLS-----GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI  444 (496)
Q Consensus       371 ~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~  444 (496)
                      .+. .+..+++|++|++++|.++     +..+..|..+++|++|+|++|++++..|..+..+++|++| +|++|++++..
T Consensus       442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~  520 (844)
T 3j0a_A          442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL-SLNSNRLTVLS  520 (844)
T ss_dssp             CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE-EEESCCCSSCC
T ss_pred             ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee-ECCCCCCCccC
Confidence            433 3556899999999999997     4445678889999999999999999999999999999999 99999999877


Q ss_pred             hhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878          445 PAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       445 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                      |..+.  ++|++|+|++|++++.+|..|   .+|+.+++++|++.+..+
T Consensus       521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          521 HNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             hhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            66665  899999999999999999775   478999999999987654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.4e-44  Score=376.67  Aligned_cols=391  Identities=23%  Similarity=0.247  Sum_probs=284.2

Q ss_pred             eeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCC
Q 035878           71 IVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDN  150 (496)
Q Consensus        71 v~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n  150 (496)
                      ..|...+ |  .++++++++ .+|. .+.  ++|+     +|++++|.+++..|..         |.++++|++|++++|
T Consensus         2 ~~C~~~~-~--c~~~~~~l~-~ip~-~~~--~~L~-----~L~Ls~n~l~~~~~~~---------~~~l~~L~~L~Ls~n   60 (549)
T 2z81_A            2 LSCDASG-V--CDGRSRSFT-SIPS-GLT--AAMK-----SLDLSFNKITYIGHGD---------LRACANLQVLILKSS   60 (549)
T ss_dssp             CEECTTS-E--EECTTSCCS-SCCS-CCC--TTCC-----EEECCSSCCCEECSST---------TSSCTTCCEEECTTS
T ss_pred             ccCCCCc-e--EECCCCccc-cccc-cCC--CCcc-----EEECcCCccCccChhh---------hhcCCcccEEECCCC
Confidence            3576544 3  688888887 5665 443  5666     8899999999766665         789999999999999


Q ss_pred             cCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCC-Ccccc
Q 035878          151 MLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINK-LSGLP  228 (496)
Q Consensus       151 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~-l~~lp  228 (496)
                      .+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|+ +..+|
T Consensus        61 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            9999999999999999999999999998888889999999999999999986 467789999999999999998 45566


Q ss_pred             -ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC--C-cCcC
Q 035878          229 -PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV--S-PKWG  304 (496)
Q Consensus       229 -~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~-~~~~  304 (496)
                       ..+..+++|++|++++|++++..|..+..+++|++|+++.|.+.......+..+++|++|++++|.+++..  + ....
T Consensus       141 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  220 (549)
T 2z81_A          141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE  220 (549)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred             HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhh
Confidence             57889999999999999999999999999999999999999987544334456899999999999988642  1 1111


Q ss_pred             CCCCCC--------------------------------------------------------------------------
Q 035878          305 KCQKLT--------------------------------------------------------------------------  310 (496)
Q Consensus       305 ~~~~L~--------------------------------------------------------------------------  310 (496)
                      .+++|+                                                                          
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~  300 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY  300 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence            222333                                                                          


Q ss_pred             -------------EEEccCCcccccCCccc-CCCCCCCEEEccCCcCccccch---hhcCCCCCCEEeccCCcCccccc-
Q 035878          311 -------------LLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGEIPA---QIGNLTELSTLSLNGNDISGPIP-  372 (496)
Q Consensus       311 -------------~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~-  372 (496)
                                   +|++++|.++ .+|..+ ..+++|++|++++|++++.+|.   .++.+++|++|++++|++++..+ 
T Consensus       301 ~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  379 (549)
T 2z81_A          301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT  379 (549)
T ss_dssp             CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH
T ss_pred             cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc
Confidence                         3333333332 223222 2455666666666666554432   24555666666666666653321 


Q ss_pred             -hhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878          373 -EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL  451 (496)
Q Consensus       373 -~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l  451 (496)
                       ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+  .++|++| ++++|++++.+    .++
T Consensus       380 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L-~Ls~N~l~~~~----~~l  450 (549)
T 2z81_A          380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVL-DVSNNNLDSFS----LFL  450 (549)
T ss_dssp             HHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEE-ECCSSCCSCCC----CCC
T ss_pred             hhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEE-ECCCCChhhhc----ccC
Confidence             33555666666666666665 45555555566666666666655 333322  1356666 66666666532    478


Q ss_pred             CCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          452 TSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       452 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      ++|++|+|++|+++ .+|. ...+++|++||+++|++++.+|.
T Consensus       451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~  491 (549)
T 2z81_A          451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG  491 (549)
T ss_dssp             TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred             ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence            89999999999998 6776 46789999999999999987774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.2e-43  Score=363.33  Aligned_cols=380  Identities=21%  Similarity=0.202  Sum_probs=302.9

Q ss_pred             CCCCCccccc--eeeCC---------CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCC
Q 035878           61 TTPSPCRWSG--IVCND---------AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFP  129 (496)
Q Consensus        61 ~~~~~C~w~g--v~c~~---------~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~  129 (496)
                      ++++.|.|.+  |.|+.         ..++++|+|+++.+++..+. .|+++++|+     +|++++|.+.+.+|...  
T Consensus         3 p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~-----~L~L~~n~~~~~i~~~~--   74 (455)
T 3v47_A            3 PGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQ-----FLKVEQQTPGLVIRNNT--   74 (455)
T ss_dssp             ----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCC-----EEECCCCSTTCEECTTT--
T ss_pred             CccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCcccc-----EEECcCCcccceECccc--
Confidence            3466787777  78853         25799999999999876666 899999999     78899999988887653  


Q ss_pred             CCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCcc--ccCCCCCceEecccCcCCcccCcc
Q 035878          130 DDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSS--LGNLSDLAVLAVASNQLSGEIPAN  207 (496)
Q Consensus       130 ~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~  207 (496)
                            |.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..  +..+++|++|++++|.+++..|..
T Consensus        75 ------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (455)
T 3v47_A           75 ------FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS  148 (455)
T ss_dssp             ------TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred             ------ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence                  788999999999999999999999999999999999999999866555  899999999999999999887876


Q ss_pred             -CCCCCCCCEEECCCCCCcc-ccccccCC--CCCcEEecCCCcccCCCCcc--------cCCCCCCcEEEccCCCCCCcc
Q 035878          208 -IGTLSKLTDLHLFINKLSG-LPPQVCKG--GKLINFTASFNHFSGPIPTS--------LKSCSSLYRVRLESNELTGDL  275 (496)
Q Consensus       208 -l~~l~~L~~L~L~~n~l~~-lp~~l~~l--~~L~~L~l~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~  275 (496)
                       +.++++|++|++++|++++ .|..+..+  .+++.+++++|.+.+..+..        +..+++|++|++++|++++..
T Consensus       149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence             8899999999999999998 45555554  78999999999998765443        346689999999999999888


Q ss_pred             ccccCC---CCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccC--CCCCCCEEEccCCcCccccchh
Q 035878          276 EQDFGI---YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIG--SLSQLVVLDLSSNQLSGEIPAQ  350 (496)
Q Consensus       276 ~~~~~~---l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~  350 (496)
                      |..+..   .++|+.|++++|.+.+...              ..+.+.+..+..+.  ..++|++|++++|.+++..|..
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred             hhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhh
Confidence            776644   3899999999998664321              11122222222222  2357888888888888777777


Q ss_pred             hcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccc
Q 035878          351 IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ  430 (496)
Q Consensus       351 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  430 (496)
                      +..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            88888888888888888877777788888888888888888777777788888888888888888877777888888888


Q ss_pred             ccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc
Q 035878          431 DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP  469 (496)
Q Consensus       431 ~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  469 (496)
                      +| ++++|++++..+..+..+++|++|++++|++++..|
T Consensus       375 ~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          375 EL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EE-ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            88 888888886666667788888888888888887776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.8e-44  Score=350.56  Aligned_cols=289  Identities=31%  Similarity=0.500  Sum_probs=191.2

Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCCCCCCC
Q 035878           28 LTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCR--WSGIVCNDA---GSVTEINLANTGLAG--TLHDLDFSS  100 (496)
Q Consensus        28 ~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~--w~gv~c~~~---~~v~~L~L~~~~l~g--~~~~~~l~~  100 (496)
                      ++|++||++||+++.|+..+++|..+         +|||.  |.||+|+..   ++|++|+|+++++.|  .+++ .+..
T Consensus         5 ~~~~~aL~~~k~~~~~~~~l~~W~~~---------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~   74 (313)
T 1ogq_A            5 PQDKQALLQIKKDLGNPTTLSSWLPT---------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLAN   74 (313)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGTTCCTT---------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGG
T ss_pred             HHHHHHHHHHHHhcCCcccccCCCCC---------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhC
Confidence            47999999999999875578999752         68998  999999854   799999999999988  7776 6776


Q ss_pred             CCCCceeccceEEccC-CcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCccc
Q 035878          101 FPNLLRFDVYELDVSR-NNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP  179 (496)
Q Consensus       101 l~~L~~L~L~~L~Ls~-n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  179 (496)
                      +++|+     +|++++ |.+.+.+|..         ++++++|++|++++|.+++.+|..|+++++|++|++++|.+++.
T Consensus        75 l~~L~-----~L~L~~~n~l~~~~p~~---------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  140 (313)
T 1ogq_A           75 LPYLN-----FLYIGGINNLVGPIPPA---------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             CTTCS-----EEEEEEETTEESCCCGG---------GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             CCCCC-----eeeCCCCCcccccCChh---------HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc
Confidence            66666     455553 6666656554         45556666666666666656666666666666666666666555


Q ss_pred             CCccccCCCCCceEecccCcCCcccCccCCCCC-CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCC
Q 035878          180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS-KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSC  258 (496)
Q Consensus       180 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  258 (496)
                      +|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++                       +.+|..+..+
T Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----------------------~~~~~~~~~l  197 (313)
T 1ogq_A          141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----------------------GKIPPTFANL  197 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----------------------EECCGGGGGC
T ss_pred             CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----------------------ccCChHHhCC
Confidence            555555566666666666655555555555554 5555555555554                       4444444444


Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878          259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL  338 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  338 (496)
                      + |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++
T Consensus       198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence            4 55555555555555555555566666666666666554443 555666677777777776666666777777777777


Q ss_pred             cCCcCccccchhhcCCCCCCEEeccCCc
Q 035878          339 SSNQLSGEIPAQIGNLTELSTLSLNGND  366 (496)
Q Consensus       339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~  366 (496)
                      ++|+++|.+|.. ..+++|+.+++++|+
T Consensus       276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          276 SFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCCcccccCCCC-ccccccChHHhcCCC
Confidence            777777666665 666777777777775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.4e-43  Score=372.83  Aligned_cols=383  Identities=21%  Similarity=0.253  Sum_probs=278.2

Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878           80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE  159 (496)
Q Consensus        80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~  159 (496)
                      +.++++++++++ +|. .+.  ++++     +|++++|.+++..|..         |.++++|++|++++|.+++..|..
T Consensus        34 ~~l~ls~~~L~~-ip~-~~~--~~L~-----~L~Ls~N~i~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~   95 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPK-DLP--PRTK-----ALSLSQNSISELRMPD---------ISFLSELRVLRLSHNRIRSLDFHV   95 (562)
T ss_dssp             CEEECTTSCCCS-CCT-TSC--TTCC-----EEECCSSCCCCCCGGG---------TTTCTTCCEEECCSCCCCEECTTT
T ss_pred             cEEEcCCCCCcc-CCC-CCC--CCcC-----EEECCCCCccccChhh---------hccCCCccEEECCCCCCCcCCHHH
Confidence            667777777763 554 332  4555     6677777776433333         567777777777777777777777


Q ss_pred             CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccccccccCCCCC-
Q 035878          160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKL-  237 (496)
Q Consensus       160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L-  237 (496)
                      |+++++|++|++++|.++ .+|..  .+++|++|++++|++++ .+|..++++++|++|++++|++++.  .+..+++| 
T Consensus        96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~  170 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLH  170 (562)
T ss_dssp             TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSC
T ss_pred             hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhce
Confidence            777777777777777776 45554  67777777777777765 3356777777777777777777652  22333444 


Q ss_pred             -cEEecCCCcc--cCCCCcccCC--------------------------CCCCcEEEccCCC------------------
Q 035878          238 -INFTASFNHF--SGPIPTSLKS--------------------------CSSLYRVRLESNE------------------  270 (496)
Q Consensus       238 -~~L~l~~n~l--~~~~p~~l~~--------------------------l~~L~~L~L~~n~------------------  270 (496)
                       ++|++++|.+  ++..|..+..                          +++|+.+++++|+                  
T Consensus       171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~  250 (562)
T 3a79_B          171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT  250 (562)
T ss_dssp             EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred             eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence             7777777766  5555554443                          3344445554442                  


Q ss_pred             ----------CCCc----cccccCCCCCccEEEcccCcccccCCcCc-----CCC-------------------------
Q 035878          271 ----------LTGD----LEQDFGIYPNLTYIDLSYNRLQGEVSPKW-----GKC-------------------------  306 (496)
Q Consensus       271 ----------l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-----~~~-------------------------  306 (496)
                                +.+.    ++..+ ..++|++|++++|.++|.+|..+     ..+                         
T Consensus       251 L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~  329 (562)
T 3a79_B          251 LLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA  329 (562)
T ss_dssp             CEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred             ceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence                      1100    00011 12377788888888877777655     222                         


Q ss_pred             -CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcc--ccchhhcCCCCCCE
Q 035878          307 -QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG--PIPEEIGALLNLDS  383 (496)
Q Consensus       307 -~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~  383 (496)
                       .+|++|++++|.+....  ....+++|++|++++|.+++.+|..+..+++|++|++++|++++  .+|..+..+++|++
T Consensus       330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence             34677777777665321  12678999999999999999899999999999999999999996  34567899999999


Q ss_pred             EEccCCcCCCCChh-hhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccC
Q 035878          384 LDLSMNRLSGPIPK-QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHN  462 (496)
Q Consensus       384 L~Ls~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  462 (496)
                      |++++|++++.+|. .+..+++|++|++++|++++.+|..+.  ++|++| ++++|+++ .+|..+.++++|++|++++|
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L-~L~~N~l~-~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL-DLHNNRIM-SIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE-ECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred             EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE-ECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence            99999999985554 578899999999999999988877654  689999 99999999 78888889999999999999


Q ss_pred             cCCcccchh-hhcCCCCCEEeCcCCCCcccCC
Q 035878          463 NLSGEIPAS-LSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       463 ~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                      +++ .+|.. |..+++|++|++++|+++|..|
T Consensus       484 ~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          484 QLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            999 56655 9999999999999999998754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.3e-43  Score=365.26  Aligned_cols=384  Identities=20%  Similarity=0.238  Sum_probs=311.9

Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878           80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE  159 (496)
Q Consensus        80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~  159 (496)
                      +.+++++++++ .+|. .+.  ++|+     +|++++|.+++..|..         |.++++|++|++++|.+++..|..
T Consensus         3 ~~l~ls~n~l~-~ip~-~~~--~~L~-----~L~Ls~n~i~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~   64 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK-DLS--QKTT-----ILNISQNYISELWTSD---------ILSLSKLRILIISHNRIQYLDISV   64 (520)
T ss_dssp             CEEECTTSCCS-SCCC-SCC--TTCS-----EEECCSSCCCCCCHHH---------HTTCTTCCEEECCSSCCCEEEGGG
T ss_pred             ceEecCCCCcc-cccc-ccc--cccc-----EEECCCCcccccChhh---------ccccccccEEecCCCccCCcChHH
Confidence            46899999998 5776 554  6777     8899999998655544         788999999999999999988999


Q ss_pred             CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccccccccCCCCC-
Q 035878          160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKL-  237 (496)
Q Consensus       160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L-  237 (496)
                      |+++++|++|++++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|++++  ..+..+++| 
T Consensus        65 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~  139 (520)
T 2z7x_B           65 FKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLN  139 (520)
T ss_dssp             GTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSC
T ss_pred             hhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccce
Confidence            999999999999999998 56766  89999999999999987 578999999999999999999987  345566777 


Q ss_pred             -cEEecCCCcc--cCCCCcccCCC--------------------------CCCcEEEccCCC-------CCCccccccCC
Q 035878          238 -INFTASFNHF--SGPIPTSLKSC--------------------------SSLYRVRLESNE-------LTGDLEQDFGI  281 (496)
Q Consensus       238 -~~L~l~~n~l--~~~~p~~l~~l--------------------------~~L~~L~L~~n~-------l~~~~~~~~~~  281 (496)
                       ++|++++|.+  .+..|..+..+                          ++|+.+++++|.       +.+.++ .++.
T Consensus       140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~  218 (520)
T 2z7x_B          140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT  218 (520)
T ss_dssp             EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG
T ss_pred             eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc
Confidence             9999999999  77777766653                          444444444443       333333 4455


Q ss_pred             CCCccEEEcccCcccccCCcCc---CCCCCCCEEEccCCcccccCCccc-----CCCCCCCEEEccCCcCccccc-hh--
Q 035878          282 YPNLTYIDLSYNRLQGEVSPKW---GKCQKLTLLGLAGNSIGGKIPAEI-----GSLSQLVVLDLSSNQLSGEIP-AQ--  350 (496)
Q Consensus       282 l~~L~~L~ls~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~--  350 (496)
                      +++|+.|++++|.+++..+..+   ...++|++|++++|+++|.+|..+     +.+++|+.+++++|.+  .+| ..  
T Consensus       219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~  296 (520)
T 2z7x_B          219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY  296 (520)
T ss_dssp             CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred             ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence            5666666666665554221111   113589999999999998899888     7777777777777766  233 11  


Q ss_pred             -----------------------hcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCC--CChhhhhCCCCC
Q 035878          351 -----------------------IGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG--PIPKQIGELRDL  405 (496)
Q Consensus       351 -----------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~~~~L  405 (496)
                                             +..+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|..+..+++|
T Consensus       297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L  376 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL  376 (520)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred             cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence                                   1678999999999999999899999999999999999999996  566789999999


Q ss_pred             CEEeccCccCCccCChh-ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCc
Q 035878          406 RSLSLSQNNLNGTIPFQ-IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS  484 (496)
Q Consensus       406 ~~L~Ls~n~l~~~~p~~-~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  484 (496)
                      ++|++++|++++.+|.. +..+++|++| ++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          377 QQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCCcCCcccccchhccCccCCEE-ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence            99999999999867764 7888999999 9999999988887664  79999999999999 788888899999999999


Q ss_pred             CCCCcccCCC
Q 035878          485 YNNLEGPLPD  494 (496)
Q Consensus       485 ~N~l~g~ip~  494 (496)
                      +|+++ .||.
T Consensus       453 ~N~l~-~l~~  461 (520)
T 2z7x_B          453 SNQLK-SVPD  461 (520)
T ss_dssp             SSCCC-CCCT
T ss_pred             CCcCC-ccCH
Confidence            99998 5775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6e-42  Score=366.74  Aligned_cols=396  Identities=23%  Similarity=0.243  Sum_probs=289.7

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878           77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI  156 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~  156 (496)
                      ..+++|||++|.|++..+. +|.++++|+     +|||++|.|++ ||+..        |.++++|++|+|++|++++..
T Consensus        52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~-----~L~Ls~N~i~~-i~~~~--------f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQ-----VLDLSRCEIQT-IEDGA--------YQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCC-----EEECTTCCCCE-ECTTT--------TTTCTTCCEEECTTCCCCEEC
T ss_pred             cCCCEEEeeCCCCCCCCHH-HHhCCCCCC-----EEECCCCcCCC-cChhH--------hcCCCCCCEEEccCCcCCCCC
Confidence            4689999999999854444 899999998     78889999984 55432        788999999999999999877


Q ss_pred             CcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCc-ccCccCCCCCCCCEEECCCCCCccc-cccccCC
Q 035878          157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG-EIPANIGTLSKLTDLHLFINKLSGL-PPQVCKG  234 (496)
Q Consensus       157 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l  234 (496)
                      +..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|+++++ |..+..+
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence            7889999999999999999997777778999999999999999875 4677888899999999999999884 4444333


Q ss_pred             CC----CcEEecCCCcccCCCCcccCCCCCCcEEEccCC-----------------------------------------
Q 035878          235 GK----LINFTASFNHFSGPIPTSLKSCSSLYRVRLESN-----------------------------------------  269 (496)
Q Consensus       235 ~~----L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-----------------------------------------  269 (496)
                      .+    ...++++.|.++...+..+. ...++.+++.+|                                         
T Consensus       197 ~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  275 (635)
T 4g8a_A          197 HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  275 (635)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred             hhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence            22    34567777665432221111 111111111111                                         


Q ss_pred             -----------------------------------------CCCCccccccCCCCCccEEEcccCcccccCC--------
Q 035878          270 -----------------------------------------ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS--------  300 (496)
Q Consensus       270 -----------------------------------------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--------  300 (496)
                                                               .+...  ..+.....++.|++.+|.+.+..+        
T Consensus       276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~  353 (635)
T 4g8a_A          276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR  353 (635)
T ss_dssp             GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred             ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhh
Confidence                                                     10000  011122344444444444332211        


Q ss_pred             -----------cCcCCCCCCCEEEccCCcccc-------------------------cCCcccCCCCCCCEEEccCCcCc
Q 035878          301 -----------PKWGKCQKLTLLGLAGNSIGG-------------------------KIPAEIGSLSQLVVLDLSSNQLS  344 (496)
Q Consensus       301 -----------~~~~~~~~L~~L~L~~n~l~~-------------------------~~~~~l~~l~~L~~L~Ls~n~l~  344 (496)
                                 .....+++|+.++++.|.+..                         ..+..+..+++|+.++++.+...
T Consensus       354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred             cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence                       112234566666666665532                         12334556677777777777655


Q ss_pred             cccc-hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC-CCChhhhhCCCCCCEEeccCccCCccCChh
Q 035878          345 GEIP-AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS-GPIPKQIGELRDLRSLSLSQNNLNGTIPFQ  422 (496)
Q Consensus       345 ~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  422 (496)
                      ...+ ..+..+++++.+++++|.+.+..+..+..++.+++|++++|.+. +..|..|..+++|++|+|++|++++..|..
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  513 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  513 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence            4433 45778889999999999998888888888999999999999754 456778889999999999999999888999


Q ss_pred             ccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcC-CCCCEEeCcCCCCccc
Q 035878          423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSM-LSLVAVNLSYNNLEGP  491 (496)
Q Consensus       423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~  491 (496)
                      |.++++|++| +|++|++++..|..|.++++|++|+|++|++++..|..|..+ ++|++|++++|+++..
T Consensus       514 f~~l~~L~~L-~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          514 FNSLSSLQVL-NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TTTCTTCCEE-ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             HcCCCCCCEE-ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999 999999998888889999999999999999999999999888 6899999999998753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.2e-40  Score=342.01  Aligned_cols=344  Identities=28%  Similarity=0.400  Sum_probs=246.4

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878           77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI  156 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~  156 (496)
                      .++++|+++++++.. ++  .+..+++|+     +||+++|.+++. |.          +.++++|++|++++|.+++..
T Consensus        46 ~~l~~L~l~~~~i~~-l~--~~~~l~~L~-----~L~Ls~n~l~~~-~~----------~~~l~~L~~L~l~~n~l~~~~  106 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID--GVEYLNNLT-----QINFSNNQLTDI-TP----------LKNLTKLVDILMNNNQIADIT  106 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT--TGGGCTTCC-----EEECCSSCCCCC-GG----------GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccEEecCCCCCcc-Cc--chhhhcCCC-----EEECCCCccCCc-hh----------hhccccCCEEECCCCccccCh
Confidence            467888888887763 33  466677776     677778877743 22          466778888888888887554


Q ss_pred             CcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCC
Q 035878          157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGK  236 (496)
Q Consensus       157 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~  236 (496)
                      +  ++++++|++|++++|.+++..+  +.++++|++|++++|.+++ ++ .+..+++|++|+++ +.+.+++. +..+++
T Consensus       107 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~  178 (466)
T 1o6v_A          107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTT  178 (466)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTT
T ss_pred             h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh-hccCCC
Confidence            4  7788888888888888775432  7778888888888887774 33 37778888888875 45555443 667778


Q ss_pred             CcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccC
Q 035878          237 LINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG  316 (496)
Q Consensus       237 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~  316 (496)
                      |++|++++|.+++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus       179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence            88888888877653  346777788888888887776554  56677788888888777653  3566777788888888


Q ss_pred             CcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCCh
Q 035878          317 NSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIP  396 (496)
Q Consensus       317 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  396 (496)
                      |.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++..|
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            77775544  6777778888888887775433  6677778888888877775433  6677778888888887776554


Q ss_pred             hhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          397 KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       397 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                        +..+++|++|++++|++++.  ..+..+++|+++ ++++|++++..|  +..+++|++|++++|++++
T Consensus       327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL-SAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE-ECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             --hccCccCCEeECCCCccCCc--hhhccCCCCCEE-eCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence              66777788888887777754  356777777777 788887776665  6777777788888777775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-40  Score=352.53  Aligned_cols=358  Identities=21%  Similarity=0.218  Sum_probs=294.9

Q ss_pred             eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878          111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL  190 (496)
Q Consensus       111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  190 (496)
                      ++|+++|.++ .+|..+           .++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|
T Consensus        35 ~l~ls~~~L~-~ip~~~-----------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           35 MVDYSNRNLT-HVPKDL-----------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             EEECTTSCCC-SCCTTS-----------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             EEEcCCCCCc-cCCCCC-----------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence            7999999999 588763           2789999999999998888899999999999999999998889999999999


Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc--cccccCCCCCcEEecCCCcccCCCCcccCCCCCC--cEEEc
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL--PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL--YRVRL  266 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~L  266 (496)
                      ++|++++|+++ .+|..  .+++|++|++++|+++++  |..+..+++|++|++++|++++.   .+..+++|  ++|++
T Consensus       103 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          103 EYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL  176 (562)
T ss_dssp             CEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred             CEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence            99999999998 57766  899999999999999985  47899999999999999999864   34445555  99999


Q ss_pred             cCCCC--CCccccccCC--------------------------CCCccEEEcccCc------------------------
Q 035878          267 ESNEL--TGDLEQDFGI--------------------------YPNLTYIDLSYNR------------------------  294 (496)
Q Consensus       267 ~~n~l--~~~~~~~~~~--------------------------l~~L~~L~ls~n~------------------------  294 (496)
                      ++|.+  ++..|..+..                          +++|+.+++++|.                        
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            99999  6666655543                          3456666666653                        


Q ss_pred             ----cccc----CCcCcCCCCCCCEEEccCCcccccCCccc-----CCCC--------------------------CCCE
Q 035878          295 ----LQGE----VSPKWGKCQKLTLLGLAGNSIGGKIPAEI-----GSLS--------------------------QLVV  335 (496)
Q Consensus       295 ----l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~--------------------------~L~~  335 (496)
                          +.+.    ++.. ...++|++|++++|.++|.+|..+     ..++                          +|++
T Consensus       257 ~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          257 QHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred             cCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence                1100    0001 122489999999999998888776     3333                          3566


Q ss_pred             EEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCC--ChhhhhCCCCCCEEeccCc
Q 035878          336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP--IPKQIGELRDLRSLSLSQN  413 (496)
Q Consensus       336 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~Ls~n  413 (496)
                      |++++|.+....  ....+++|++|++++|++++.+|..+..+++|++|++++|++++.  +|..+.++++|++|++++|
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence            666666654221  126789999999999999998999999999999999999999963  4567899999999999999


Q ss_pred             cCCccCCh-hccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccC
Q 035878          414 NLNGTIPF-QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL  492 (496)
Q Consensus       414 ~l~~~~p~-~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  492 (496)
                      ++++.+|. .+..+++|+++ ++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .|
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l  488 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVL-NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV  488 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEE-ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CC
T ss_pred             cCCCccChhhhcCcccCCEE-ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CC
Confidence            99986665 47889999999 9999999988877654  79999999999999 78887779999999999999999 57


Q ss_pred             CC
Q 035878          493 PD  494 (496)
Q Consensus       493 p~  494 (496)
                      |.
T Consensus       489 ~~  490 (562)
T 3a79_B          489 PD  490 (562)
T ss_dssp             CT
T ss_pred             CH
Confidence            75

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.5e-41  Score=343.84  Aligned_cols=364  Identities=24%  Similarity=0.266  Sum_probs=221.9

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCC--------------------CCCC
Q 035878           77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDK--------------------NQPM  136 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~--------------------n~~l  136 (496)
                      .++++++++++.+ |.+|+ +++++++|+     +|++++|.+.|.+|..++.+..                    +..+
T Consensus        11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~-----~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV-EAENVKSKT-----EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             -------------------------CCHH-----HHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             ccchhhhcccCch-hhCCh-hHhcccchh-----hhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            5688899999999 78888 899999998     5566777787778777543210                    0001


Q ss_pred             C----CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCC
Q 035878          137 T----GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS  212 (496)
Q Consensus       137 ~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (496)
                      .    -.++|++|++++|.+++ +|..   +++|++|++++|.+++ +|..   .++|++|++++|++++ +| .+++++
T Consensus        84 ~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~  153 (454)
T 1jl5_A           84 SSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS  153 (454)
T ss_dssp             SCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             ccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence            1    12456666666666665 4432   2567777777776663 2221   1577777777777775 55 477777


Q ss_pred             CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878          213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY  292 (496)
Q Consensus       213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  292 (496)
                      +|++|++++|+++++|...   .+|++|++++|++++ +| .+.++++|++|++++|++++ +|..   .++|++|++++
T Consensus       154 ~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~  224 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN  224 (454)
T ss_dssp             TCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred             CCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence            7777777777777776543   477777777777776 45 47777777777777777775 3322   25777778877


Q ss_pred             CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc
Q 035878          293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP  372 (496)
Q Consensus       293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  372 (496)
                      |.++ .+| .+..+++|++|++++|++++ +|..   .++|++|++++|++++ +|..   .++|++|++++|++++ +|
T Consensus       225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~  293 (454)
T 1jl5_A          225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS  293 (454)
T ss_dssp             SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES
T ss_pred             CcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc
Confidence            7777 455 37777788888888877774 3432   3677888888887774 4432   3678888888888775 22


Q ss_pred             hhhcCCCCCCEEEccCCcCCCCChhhhhCC-CCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878          373 EEIGALLNLDSLDLSMNRLSGPIPKQIGEL-RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL  451 (496)
Q Consensus       373 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l  451 (496)
                      ..   .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|+++ ++++|+++ .+|.   .+
T Consensus       294 ~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L-~L~~N~l~-~lp~---~l  356 (454)
T 1jl5_A          294 EL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL-IASFNHLA-EVPE---LP  356 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE-ECCSSCCS-CCCC---CC
T ss_pred             Cc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEE-ECCCCccc-cccc---hh
Confidence            11   2578888888888774 22    23 589999999999985 6654   5788888 99999999 5776   47


Q ss_pred             CCCCEEEcccCcCCc--ccchhhhcC-------------CCCCEEeCcCCCCcc--cCCC
Q 035878          452 TSLQSMNLSHNNLSG--EIPASLSSM-------------LSLVAVNLSYNNLEG--PLPD  494 (496)
Q Consensus       452 ~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~g--~ip~  494 (496)
                      ++|++|++++|++++  .+|..+..+             ++|++||+++|+++|  .||.
T Consensus       357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred             hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence            899999999999998  788888887             889999999999998  8885

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.2e-40  Score=340.15  Aligned_cols=343  Identities=20%  Similarity=0.260  Sum_probs=210.4

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878           77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI  156 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~  156 (496)
                      .++++|+++++.+++. +  .+..+++|+     +|++++|.+++ +|           ++++++|++|++++|.+++. 
T Consensus        42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~-----~L~Ls~n~l~~-~~-----------~~~l~~L~~L~Ls~N~l~~~-  100 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T--GIEKLTGLT-----KLICTSNNITT-LD-----------LSQNTNLTYLACDSNKLTNL-  100 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T--TGGGCTTCS-----EEECCSSCCSC-CC-----------CTTCTTCSEEECCSSCCSCC-
T ss_pred             CCCCEEEccCCCcccC-h--hhcccCCCC-----EEEccCCcCCe-Ec-----------cccCCCCCEEECcCCCCcee-
Confidence            4677777777777753 2  566777776     56677777764 32           46677777777777777754 


Q ss_pred             CcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc-ccccccCCC
Q 035878          157 PEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGG  235 (496)
Q Consensus       157 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~  235 (496)
                      +  ++++++|++|++++|.+++ +|  ++.+++|++|++++|++++. +  ++.+++|++|++++|+..+ +  .+..++
T Consensus       101 ~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          101 D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC
Confidence            2  6777777777777777775 33  67777777777777777753 2  6677777777777774333 4  355677


Q ss_pred             CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEcc
Q 035878          236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA  315 (496)
Q Consensus       236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~  315 (496)
                      +|++|++++|++++ +|  +..+++|++|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|+.|+++
T Consensus       171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~  241 (457)
T 3bz5_A          171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS  241 (457)
T ss_dssp             TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred             cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence            77777777777776 33  66777777777777777764   36667777777777777776 34  6677777777777


Q ss_pred             CCcccccCCcccCCCC-------CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878          316 GNSIGGKIPAEIGSLS-------QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM  388 (496)
Q Consensus       316 ~n~l~~~~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  388 (496)
                      +|++++..+..+..++       +|++|++++|.+.+.+|  ++.+++|++|++++|...+.+|..   ..+|+.|+   
T Consensus       242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~---  313 (457)
T 3bz5_A          242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELD---  313 (457)
T ss_dssp             SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCC---
T ss_pred             CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceEec---
Confidence            7777765433332222       23333344444333333  234455555555555544443321   11111111   


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878          389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI  468 (496)
Q Consensus       389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  468 (496)
                                +.++++|++|++++|++++. +  ++.+++|+.| ++++|++++        ++.|+.|++++|+++|. 
T Consensus       314 ----------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L-~l~~N~l~~--------l~~L~~L~l~~n~l~g~-  370 (457)
T 3bz5_A          314 ----------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSL-SCVNAHIQD--------FSSVGKIPALNNNFEAE-  370 (457)
T ss_dssp             ----------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEE-ECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred             ----------hhhcccCCEEECCCCccccc-c--cccCCcCcEE-ECCCCCCCC--------ccccccccccCCcEEec-
Confidence                      22335566666666666652 2  5566666666 666666664        13445555666666554 


Q ss_pred             chhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          469 PASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       469 p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                          ..+..|..+++++|+++|.||+
T Consensus       371 ----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          371 ----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             ----EEEEECCCBCCBTTBEEEECCT
T ss_pred             ----ceeeecCccccccCcEEEEcCh
Confidence                2344566667777777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.3e-39  Score=330.63  Aligned_cols=345  Identities=26%  Similarity=0.388  Sum_probs=295.8

Q ss_pred             CCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccC
Q 035878          101 FPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPI  180 (496)
Q Consensus       101 l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  180 (496)
                      +++++     .|+++++.+. .+|.          +..+++|++|++++|.+++..+  ++++++|++|++++|.+++..
T Consensus        45 l~~l~-----~L~l~~~~i~-~l~~----------~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~  106 (466)
T 1o6v_A           45 LDQVT-----TLQADRLGIK-SIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT  106 (466)
T ss_dssp             HHTCC-----EEECCSSCCC-CCTT----------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             hcccc-----EEecCCCCCc-cCcc----------hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh
Confidence            45555     6778888886 4553          6778999999999999986654  899999999999999998655


Q ss_pred             CccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCC
Q 035878          181 PSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSS  260 (496)
Q Consensus       181 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  260 (496)
                      +  +.++++|++|++++|.+++..+  +.++++|++|++++|.+.+++. +..+++|++|+++ +.+.+..  .+.++++
T Consensus       107 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~~--~~~~l~~  178 (466)
T 1o6v_A          107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLK--PLANLTT  178 (466)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCCG--GGTTCTT
T ss_pred             h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCch--hhccCCC
Confidence            4  8999999999999999986533  8899999999999999998874 7889999999996 4555433  3889999


Q ss_pred             CcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccC
Q 035878          261 LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS  340 (496)
Q Consensus       261 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  340 (496)
                      |++|++++|.+++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus       179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence            99999999998865  347889999999999999987655  77889999999999999864  4678899999999999


Q ss_pred             CcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCC
Q 035878          341 NQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP  420 (496)
Q Consensus       341 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p  420 (496)
                      |.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++..|
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            99986654  8899999999999999986544  7889999999999999997544  7889999999999999997766


Q ss_pred             hhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878          421 FQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       421 ~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                        +..+++|++| ++++|++++.  ..+.++++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       327 --~~~l~~L~~L-~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 --VSSLTKLQRL-FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --GGGCTTCCEE-ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             --hccCccCCEe-ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence              7789999999 9999999965  468899999999999999998877  8899999999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=332.74  Aligned_cols=322  Identities=20%  Similarity=0.191  Sum_probs=277.8

Q ss_pred             CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878          142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI  221 (496)
Q Consensus       142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (496)
                      -+.++.+++.++ .+|..+.  +++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            468889998888 5666554  6899999999999988888999999999999999999988899999999999999999


Q ss_pred             CCCcccccc-ccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCC
Q 035878          222 NKLSGLPPQ-VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS  300 (496)
Q Consensus       222 n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  300 (496)
                      |+++.+|.. +..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            999998765 5678999999999999988888888999999999999999988888888888999999999998887766


Q ss_pred             cCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878          301 PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN  380 (496)
Q Consensus       301 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  380 (496)
                      ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|++++..+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            67888889999999999988887778888899999999988887777777666778999999999888555567888888


Q ss_pred             CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcc
Q 035878          381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLS  460 (496)
Q Consensus       381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  460 (496)
                      |++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|++| ++++|++++..+..|..+++|++|+++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL-NVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE-ECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE-ECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            9999999998887777778888889999999988888888888888888888 899998887777778888888899999


Q ss_pred             cCcCCcc
Q 035878          461 HNNLSGE  467 (496)
Q Consensus       461 ~N~l~~~  467 (496)
                      +|+++..
T Consensus       329 ~N~l~c~  335 (477)
T 2id5_A          329 SNPLACD  335 (477)
T ss_dssp             SSCEECS
T ss_pred             CCCccCc
Confidence            8888754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.7e-38  Score=339.93  Aligned_cols=372  Identities=22%  Similarity=0.285  Sum_probs=283.0

Q ss_pred             CCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 035878           77 GSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRI  156 (496)
Q Consensus        77 ~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~  156 (496)
                      .+++.|+|++|.|++..+. +|.++++|+     +|+|++|++++ +|...        |.++++|++|+|++|.+++..
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~-----~L~Ls~N~l~~-l~~~~--------f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDG-AYQSLSHLS-----TLILTGNPIQS-LALGA--------FSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             TTCCEEECTTCCCCEECTT-TTTTCTTCC-----EEECTTCCCCE-ECGGG--------GTTCTTCCEEECTTSCCCCST
T ss_pred             CCCCEEECCCCcCCCcChh-HhcCCCCCC-----EEEccCCcCCC-CCHHH--------hcCCCCCCEEECCCCcCCCCC
Confidence            4799999999999854444 899999999     78899999984 55432        789999999999999999888


Q ss_pred             CcCCCCCCCCCEEEccCCCCcc-cCCccccCCCCCceEecccCcCCcccCccCCCCCC----CCEEECCCCCCccccccc
Q 035878          157 PEEIGNCKLLTLLALDGNFLSG-PIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSK----LTDLHLFINKLSGLPPQV  231 (496)
Q Consensus       157 ~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~----L~~L~L~~n~l~~lp~~l  231 (496)
                      +..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+    ...++++.|.+..++...
T Consensus       141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~  220 (635)
T 4g8a_A          141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  220 (635)
T ss_dssp             TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence            8889999999999999999975 46888999999999999999999877776654433    235666666655443332


Q ss_pred             cCCCCCcEEecCCC------------------------------------------------------------------
Q 035878          232 CKGGKLINFTASFN------------------------------------------------------------------  245 (496)
Q Consensus       232 ~~l~~L~~L~l~~n------------------------------------------------------------------  245 (496)
                      .....++.+++..|                                                                  
T Consensus       221 ~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  300 (635)
T 4g8a_A          221 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID  300 (635)
T ss_dssp             TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT
T ss_pred             ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhh
Confidence            22222222222111                                                                  


Q ss_pred             ----------------cccCCCCcccCCCCCCcEEEccCCCCCCcccc-------------------ccCCCCCccEEEc
Q 035878          246 ----------------HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQ-------------------DFGIYPNLTYIDL  290 (496)
Q Consensus       246 ----------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~L~~L~l  290 (496)
                                      .+...  ..+.....++.|++.+|.+.+..+.                   ....+++|+.+++
T Consensus       301 ~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~l  378 (635)
T 4g8a_A          301 LFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL  378 (635)
T ss_dssp             TTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEEC
T ss_pred             hhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchh
Confidence                            11000  0112223444444444433221111                   1123455555555


Q ss_pred             ccCcccc-------------------------cCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCc
Q 035878          291 SYNRLQG-------------------------EVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQLS  344 (496)
Q Consensus       291 s~n~l~~-------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~  344 (496)
                      ++|.+..                         ..+..+..+++|+.+++..++.....+ ..+..+++++.++++.|.+.
T Consensus       379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~  458 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  458 (635)
T ss_dssp             CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE
T ss_pred             hccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            5554421                         123456678889999998887765543 46788999999999999999


Q ss_pred             cccchhhcCCCCCCEEeccCCcC-ccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhc
Q 035878          345 GEIPAQIGNLTELSTLSLNGNDI-SGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI  423 (496)
Q Consensus       345 ~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~  423 (496)
                      +..+..+..++++++|++++|.+ .+..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+
T Consensus       459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  538 (635)
T 4g8a_A          459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  538 (635)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred             cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence            88899999999999999999975 44578889999999999999999999889999999999999999999999889999


Q ss_pred             cCCccccccccccCCcCCccchhhhcCC-CCCCEEEcccCcCCc
Q 035878          424 GNLVGLQDLLDLSYNSLTGEIPAQLEKL-TSLQSMNLSHNNLSG  466 (496)
Q Consensus       424 ~~l~~L~~LL~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~  466 (496)
                      ..+++|++| +|++|++++..|..+.++ ++|++|+|++|+++.
T Consensus       539 ~~l~~L~~L-~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          539 KCLNSLQVL-DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTCTTCCEE-ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             hCCCCCCEE-ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            999999999 999999999999999988 689999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=330.54  Aligned_cols=320  Identities=19%  Similarity=0.160  Sum_probs=240.7

Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcC
Q 035878           80 TEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEE  159 (496)
Q Consensus        80 ~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~  159 (496)
                      +.++.++.+++ .+|. .+.  ++++     +||+++|.+++..|..         |.++++|++|+|++|.+++..|..
T Consensus        14 ~~v~c~~~~l~-~ip~-~~~--~~l~-----~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~i~~~~~~~   75 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPE-GIP--TETR-----LLDLGKNRIKTLNQDE---------FASFPHLEELELNENIVSAVEPGA   75 (477)
T ss_dssp             TEEECCSCCCS-SCCS-CCC--TTCS-----EEECCSSCCCEECTTT---------TTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CEEEeCCCCcC-cCCC-CCC--CCCc-----EEECCCCccceECHhH---------ccCCCCCCEEECCCCccCEeChhh
Confidence            35777877776 4444 332  3444     7788888887655544         677888888888888888777888


Q ss_pred             CCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc-ccccccCCCCCc
Q 035878          160 IGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG-LPPQVCKGGKLI  238 (496)
Q Consensus       160 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~  238 (496)
                      |+++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++ .+..+..+++|+
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            8888888888888888876555667788888888888888887777778888888888888888877 445667777888


Q ss_pred             EEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc
Q 035878          239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS  318 (496)
Q Consensus       239 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  318 (496)
                      +|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|+
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            88888888776666667777888888888888777666677777888888888777766666666666678888888887


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878          319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQ  398 (496)
Q Consensus       319 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  398 (496)
                      +++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            77554456777778888888888777666666777778888888888777777777777778888888888777666666


Q ss_pred             hhCCCCCCEEeccCccCCc
Q 035878          399 IGELRDLRSLSLSQNNLNG  417 (496)
Q Consensus       399 l~~~~~L~~L~Ls~n~l~~  417 (496)
                      |..+++|++|++++|++..
T Consensus       316 ~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             BSCGGGCCEEECCSSCEEC
T ss_pred             cCCCcccCEEEccCCCccC
Confidence            7777778888888777763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.3e-38  Score=321.92  Aligned_cols=317  Identities=22%  Similarity=0.238  Sum_probs=241.8

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGR  155 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~  155 (496)
                      ..++++|+++++.+++.    .++.+++|+     +|++++|.+++ +|           ++++++|++|++++|.+++.
T Consensus        63 l~~L~~L~Ls~n~l~~~----~~~~l~~L~-----~L~Ls~N~l~~-~~-----------~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL----DLSQNTNLT-----YLACDSNKLTN-LD-----------VTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             CTTCSEEECCSSCCSCC----CCTTCTTCS-----EEECCSSCCSC-CC-----------CTTCTTCCEEECCSSCCSCC
T ss_pred             cCCCCEEEccCCcCCeE----ccccCCCCC-----EEECcCCCCce-ee-----------cCCCCcCCEEECCCCcCCee
Confidence            46799999999999873    378888888     78899999985 33           67899999999999999974


Q ss_pred             CCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCC
Q 035878          156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGG  235 (496)
Q Consensus       156 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~  235 (496)
                       |  ++++++|++|++++|.+++. +  ++.+++|++|++++|+..+.+  .+..+++|++|++++|+++++|  +..++
T Consensus       122 -~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~  191 (457)
T 3bz5_A          122 -D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK  191 (457)
T ss_dssp             -C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT
T ss_pred             -c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCC
Confidence             4  89999999999999999974 3  889999999999999766566  4788999999999999999987  78899


Q ss_pred             CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCC-------C
Q 035878          236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQ-------K  308 (496)
Q Consensus       236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-------~  308 (496)
                      +|+.|++++|++++.   .+..+++|++|++++|++++ +|  +..+++|++|++++|.+++..+..+..+.       +
T Consensus       192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~  265 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD  265 (457)
T ss_dssp             TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred             CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence            999999999999975   38899999999999999998 45  88899999999999999987655444443       4


Q ss_pred             CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchh--------hcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878          309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQ--------IGNLTELSTLSLNGNDISGPIPEEIGALLN  380 (496)
Q Consensus       309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  380 (496)
                      |+.|++++|.+.+.+|  ++.+++|++|++++|...+.+|..        +..+++|++|++++|++++. +  ++.+++
T Consensus       266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~  340 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTK  340 (457)
T ss_dssp             CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred             CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCc
Confidence            5666666676666665  568899999999999988777642        33445555555555555542 2  455555


Q ss_pred             CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhh
Q 035878          381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQL  448 (496)
Q Consensus       381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l  448 (496)
                      |++|++++|++++        ++.|..|++++|.+.|.     +.+..+..+ ++++|+++|.+|..+
T Consensus       341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l-~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKE-TLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCB-CCBTTBEEEECCTTC
T ss_pred             CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcc-ccccCcEEEEcChhH
Confidence            5555555555553        12344445555555543     233445555 666666666665443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-38  Score=324.60  Aligned_cols=338  Identities=24%  Similarity=0.317  Sum_probs=197.8

Q ss_pred             CCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCC-------------
Q 035878          100 SFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLL-------------  166 (496)
Q Consensus       100 ~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------------  166 (496)
                      ..++|+     +|++++|.+ |.+|.+         ++++++|++|++++|.+.|.+|..++++++|             
T Consensus         9 ~~~~L~-----~L~l~~n~l-~~iP~~---------i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l   73 (454)
T 1jl5_A            9 SNTFLQ-----EPLRHSSNL-TEMPVE---------AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA   73 (454)
T ss_dssp             ----------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred             ccccch-----hhhcccCch-hhCChh---------HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCC
Confidence            345666     788999999 899988         6777888888888888888888888777654             


Q ss_pred             CEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCc
Q 035878          167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNH  246 (496)
Q Consensus       167 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~  246 (496)
                      ++|++++|.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|+++++|...   ++|++|++++|+
T Consensus        74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~  142 (454)
T 1jl5_A           74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ  142 (454)
T ss_dssp             SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC
T ss_pred             CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCC
Confidence            777777777774 3431   2577777777777775 5543   356667777777666655321   566666776666


Q ss_pred             ccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcc
Q 035878          247 FSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE  326 (496)
Q Consensus       247 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  326 (496)
                      +++ +| .+.++++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..
T Consensus       143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~  213 (454)
T 1jl5_A          143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL  213 (454)
T ss_dssp             CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred             CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence            665 45 46666666666666666664 33322   466666666666665 33 46666666666666666654 2322


Q ss_pred             cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCC
Q 035878          327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR  406 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~  406 (496)
                         .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|..   +++|++|++++|++++ +|..   .++|+
T Consensus       214 ---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~  280 (454)
T 1jl5_A          214 ---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLT  280 (454)
T ss_dssp             ---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred             ---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCC
Confidence               135666666666665 4442 5566666666666666653 3321   2455555555555553 3321   23444


Q ss_pred             EEeccCccCCc--cCChh-------------ccCC-ccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccch
Q 035878          407 SLSLSQNNLNG--TIPFQ-------------IGNL-VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA  470 (496)
Q Consensus       407 ~L~Ls~n~l~~--~~p~~-------------~~~l-~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  470 (496)
                      +|++++|++++  .+|..             +..+ ++|++| ++++|++++ +|..   +++|++|++++|+++ .+|.
T Consensus       281 ~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L-~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~  354 (454)
T 1jl5_A          281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL-NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE  354 (454)
T ss_dssp             EEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE-ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred             EEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEE-ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc
Confidence            44444444443  22211             1122 478888 999999985 6654   588999999999999 4666


Q ss_pred             hhhcCCCCCEEeCcCCCCcc--cCCC
Q 035878          471 SLSSMLSLVAVNLSYNNLEG--PLPD  494 (496)
Q Consensus       471 ~l~~l~~L~~L~ls~N~l~g--~ip~  494 (496)
                         .+++|++|++++|+++|  .+|.
T Consensus       355 ---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          355 ---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ---hhhhccEEECCCCCCCcCCCChH
Confidence               47899999999999999  7885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-37  Score=313.79  Aligned_cols=308  Identities=23%  Similarity=0.237  Sum_probs=180.1

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      ++++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            44444555544443333334445555555555555554444445555555555555555554444445555555555555


Q ss_pred             CCCCccccccc-cCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878          221 INKLSGLPPQV-CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       221 ~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      +|+++.+|..+ ..+++|++|++++|++++..|..+..+++|++|++++|++++.   .+..+++|++|++++|.+++. 
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-  201 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-  201 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-
Confidence            55555544442 3455555555555555555455555566666666666665543   233445666666666665532 


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL  379 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  379 (496)
                          ...++|++|++++|.++.. |.  ...++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..++
T Consensus       202 ----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          202 ----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             ----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence                2234566666666666543 22  1235677777777776643  4566667777777777777766666677777


Q ss_pred             CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878          380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL  459 (496)
Q Consensus       380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L  459 (496)
                      +|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++| ++++|++++. +  +..+++|++|++
T Consensus       273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L-~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL-YLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-ECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE-ECCCCcccee-C--chhhccCCEEEc
Confidence            77777777777763 4545556677777777777776 556566667777777 7777777643 3  566677777777


Q ss_pred             ccCcCCcc
Q 035878          460 SHNNLSGE  467 (496)
Q Consensus       460 s~N~l~~~  467 (496)
                      ++|+++..
T Consensus       347 ~~N~~~~~  354 (390)
T 3o6n_A          347 SHNDWDCN  354 (390)
T ss_dssp             CSSCEEHH
T ss_pred             CCCCccch
Confidence            77777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-37  Score=330.07  Aligned_cols=303  Identities=22%  Similarity=0.212  Sum_probs=147.7

Q ss_pred             eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878          111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL  190 (496)
Q Consensus       111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  190 (496)
                      .+++++|.+. .+|..+        +.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|
T Consensus        55 ~l~l~~~~l~-~lp~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           55 IVTFKNSTMR-KLPAAL--------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             EEEESSCEES-EECTHH--------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEEeeCCCCC-CcCHHH--------HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            5555555554 344432        3455566666666666665555556666666666666666665555555566666


Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCC
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN  269 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  269 (496)
                      ++|++++|.+++..+..|+++++|++|++++|.+++++ ..+..+++|++|++++|.+++..   +..+++|+.|++++|
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence            66666666665443444455566666666666555532 23445555555555555554321   333445555555555


Q ss_pred             CCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch
Q 035878          270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA  349 (496)
Q Consensus       270 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  349 (496)
                      .+++     +...++|++|++++|.+....+..   .++|+.|++++|.+++  +..+..+++|++|++++|.+++..|.
T Consensus       203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          203 LLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             CCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence            4442     122234555555555544322211   1344445555444443  13344444444444444444444444


Q ss_pred             hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccc
Q 035878          350 QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL  429 (496)
Q Consensus       350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  429 (496)
                      .++.+++|++|+|++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++. |  +..+++|
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L  347 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  347 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence            44444444444444444442 2333334444444444444444 3333444444444444444444422 1  3333444


Q ss_pred             cccccccCCcCC
Q 035878          430 QDLLDLSYNSLT  441 (496)
Q Consensus       430 ~~LL~Ls~N~l~  441 (496)
                      +.| ++++|.++
T Consensus       348 ~~L-~l~~N~~~  358 (597)
T 3oja_B          348 KNL-TLSHNDWD  358 (597)
T ss_dssp             SEE-ECCSSCEE
T ss_pred             CEE-EeeCCCCC
Confidence            444 44444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3e-36  Score=298.92  Aligned_cols=307  Identities=23%  Similarity=0.364  Sum_probs=203.4

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + +.+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            3456777777777777763 33 366777777777777777643 33 6777777777777777764 2 3466777777


Q ss_pred             EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878          216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL  295 (496)
Q Consensus       216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  295 (496)
                      +|++++|.+++++. +..+++|++|++++|.....++                         .+..+++|++|++++|.+
T Consensus       114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-------------------------~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-------------------------PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-------------------------GGTTCTTCCEEECCSSCC
T ss_pred             EEECcCCcccCchh-hccCCceeEEECCCCCCccccc-------------------------chhhCCCCcEEEecCCCc
Confidence            77777777666554 4455555555555554332222                         244445555555555554


Q ss_pred             cccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhh
Q 035878          296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI  375 (496)
Q Consensus       296 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  375 (496)
                      .+..+  +..+++|++|++++|.+++..+  +..+++|+++++++|.+++..+  +..+++|++|++++|++++..+  +
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            43322  4555566666666666553322  5566677777777777664433  6667777777777777764433  6


Q ss_pred             cCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCC
Q 035878          376 GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQ  455 (496)
Q Consensus       376 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~  455 (496)
                      ..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++| ++++|++++..|..+.++++|+
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL-FLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE-ECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE-ECcCCcCCCcChhHhhccccCC
Confidence            6777777777777777753  3477778888888888887753  357778888888 8888888887888888888888


Q ss_pred             EEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878          456 SMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       456 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  489 (496)
                      +|++++|++++..|  +..+++|++|++++|+++
T Consensus       315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888888887666  778888888888888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.4e-36  Score=298.58  Aligned_cols=308  Identities=24%  Similarity=0.312  Sum_probs=207.9

Q ss_pred             CCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCC
Q 035878           97 DFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFL  176 (496)
Q Consensus        97 ~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  176 (496)
                      .+..+++|+     +|++++|.+. .+|.          +..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        39 ~~~~l~~L~-----~L~l~~~~i~-~~~~----------~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i  100 (347)
T 4fmz_A           39 TQEELESIT-----KLVVAGEKVA-SIQG----------IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI  100 (347)
T ss_dssp             CHHHHTTCS-----EEECCSSCCC-CCTT----------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cchhccccc-----EEEEeCCccc-cchh----------hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc
Confidence            456788888     7888899887 4443          6789999999999999986544  99999999999999999


Q ss_pred             cccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccC
Q 035878          177 SGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLK  256 (496)
Q Consensus       177 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~  256 (496)
                      ++ + +.+..+++|++|++++|.+++. +. +..+++|++|++++|.....+..+..+++|++|++++|.+.+..+  +.
T Consensus       101 ~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~  174 (347)
T 4fmz_A          101 TD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA  174 (347)
T ss_dssp             CC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred             cC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc
Confidence            85 3 4699999999999999999854 33 889999999999999766644558888899999998888875433  66


Q ss_pred             CCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 035878          257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVL  336 (496)
Q Consensus       257 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  336 (496)
                      .+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+            
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~------------  238 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP------------  238 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------------
T ss_pred             cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc------------
Confidence            77777777777777664432  5555666666666665554322  4444555555555554443222            


Q ss_pred             EccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878          337 DLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       337 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                                    +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|+++
T Consensus       239 --------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          239 --------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             --------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             --------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence                          44455555555555555432  2345555555555555555532  23555666666666666666


Q ss_pred             ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       417 ~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      +..|..+..+++|+++ ++++|++++..|  +..+++|++|++++|+++
T Consensus       301 ~~~~~~l~~l~~L~~L-~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTL-FLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGHHHHHTCTTCSEE-ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcChhHhhccccCCEE-EccCCccccccC--hhhhhccceeehhhhccc
Confidence            5555666666666666 666666665444  566666666776666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-37  Score=308.43  Aligned_cols=311  Identities=21%  Similarity=0.196  Sum_probs=270.3

Q ss_pred             CCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCccc
Q 035878          100 SFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP  179 (496)
Q Consensus       100 ~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  179 (496)
                      .+++++     ++++++|.+. .+|..+        +.++++|++|++++|.+++..+..|+.+++|++|++++|.+++.
T Consensus        43 ~l~~l~-----~l~l~~~~l~-~l~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  108 (390)
T 3o6n_A           43 TLNNQK-----IVTFKNSTMR-KLPAAL--------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL  108 (390)
T ss_dssp             GGCCCS-----EEEEESCEES-EECTHH--------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCce-----EEEecCCchh-hCChhH--------hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence            345555     7889999987 677653        57889999999999999988888999999999999999999988


Q ss_pred             CCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecCCCcccCCCCcccCCC
Q 035878          180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTASFNHFSGPIPTSLKSC  258 (496)
Q Consensus       180 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  258 (496)
                      .|..|+++++|++|++++|.++...+..+.++++|++|++++|+++++ |..+..+++|++|++++|++++.   .+..+
T Consensus       109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l  185 (390)
T 3o6n_A          109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLI  185 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGC
T ss_pred             CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccc
Confidence            888899999999999999999955555578999999999999999995 45588899999999999999864   35678


Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878          259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL  338 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  338 (496)
                      ++|++|++++|.+++.     ...++|++|++++|.+.....   ...++|+.|++++|.+++.  ..+..+++|++|++
T Consensus       186 ~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          186 PSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL  255 (390)
T ss_dssp             TTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             cccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence            8999999999988743     345789999999999986533   2357899999999999864  57889999999999


Q ss_pred             cCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCcc
Q 035878          339 SSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT  418 (496)
Q Consensus       339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  418 (496)
                      ++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence            9999998889999999999999999999985 5667788999999999999999 5677788999999999999999854


Q ss_pred             CChhccCCccccccccccCCcCCcc
Q 035878          419 IPFQIGNLVGLQDLLDLSYNSLTGE  443 (496)
Q Consensus       419 ~p~~~~~l~~L~~LL~Ls~N~l~~~  443 (496)
                       +  +..+++|++| ++++|++++.
T Consensus       334 -~--~~~~~~L~~L-~l~~N~~~~~  354 (390)
T 3o6n_A          334 -K--LSTHHTLKNL-TLSHNDWDCN  354 (390)
T ss_dssp             -C--CCTTCCCSEE-ECCSSCEEHH
T ss_pred             -C--chhhccCCEE-EcCCCCccch
Confidence             4  6788999999 9999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-36  Score=317.43  Aligned_cols=312  Identities=23%  Similarity=0.220  Sum_probs=266.0

Q ss_pred             CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878          138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL  217 (496)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (496)
                      .+.+++.+++++|.+....+..++++++|++|+|++|.+++..|..|+.+++|++|++++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            36789999999999997777778999999999999999998888899999999999999999998888889999999999


Q ss_pred             ECCCCCCccccccc-cCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc
Q 035878          218 HLFINKLSGLPPQV-CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ  296 (496)
Q Consensus       218 ~L~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  296 (496)
                      ++++|.++++|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..   +..+++|+.|++++|.++
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            99999999988775 78999999999999999988888999999999999999998653   455788999999999887


Q ss_pred             ccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhc
Q 035878          297 GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG  376 (496)
Q Consensus       297 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  376 (496)
                      +.     ...++|+.|++++|.++...+..   .++|++|++++|.+++  +..+..+++|++|++++|.+++..|..++
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            53     34467899999999887543322   3688999999998886  36678888999999999999888888888


Q ss_pred             CCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCE
Q 035878          377 ALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQS  456 (496)
Q Consensus       377 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~  456 (496)
                      .+++|++|++++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.| ++++|++++. |  +..+++|++
T Consensus       276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L-~L~~N~l~~~-~--~~~~~~L~~  349 (597)
T 3oja_B          276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL-YLDHNSIVTL-K--LSTHHTLKN  349 (597)
T ss_dssp             TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-ECCSSCCCCC-C--CCTTCCCSE
T ss_pred             CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE-ECCCCCCCCc-C--hhhcCCCCE
Confidence            88899999999998885 5666677888899999988887 677778888888888 8888888854 3  667788888


Q ss_pred             EEcccCcCCccc
Q 035878          457 MNLSHNNLSGEI  468 (496)
Q Consensus       457 L~Ls~N~l~~~~  468 (496)
                      |++++|++++..
T Consensus       350 L~l~~N~~~~~~  361 (597)
T 3oja_B          350 LTLSHNDWDCNS  361 (597)
T ss_dssp             EECCSSCEEHHH
T ss_pred             EEeeCCCCCChh
Confidence            888888887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.3e-37  Score=298.92  Aligned_cols=253  Identities=28%  Similarity=0.454  Sum_probs=230.3

Q ss_pred             CCCcEEecCCCcccC--CCCcccCCCCCCcEEEccC-CCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCE
Q 035878          235 GKLINFTASFNHFSG--PIPTSLKSCSSLYRVRLES-NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL  311 (496)
Q Consensus       235 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  311 (496)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467778888888887  7888888899999999984 8888888888999999999999999999888988999999999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCC-CCCEEeccCCcCccccchhhcCCCCCCEEEccCCc
Q 035878          312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLT-ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNR  390 (496)
Q Consensus       312 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  390 (496)
                      |++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999988999999999999999999999989999999988 999999999999999999999887 9999999999


Q ss_pred             CCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccch
Q 035878          391 LSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPA  470 (496)
Q Consensus       391 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  470 (496)
                      +++.+|..+..+++|++|++++|.+++.+|. +..+++|++| ++++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE-ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEE-ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            9988999999999999999999999977775 7889999999 9999999999999999999999999999999999998


Q ss_pred             hhhcCCCCCEEeCcCCC-Cccc
Q 035878          471 SLSSMLSLVAVNLSYNN-LEGP  491 (496)
Q Consensus       471 ~l~~l~~L~~L~ls~N~-l~g~  491 (496)
                      . ..+++|+.+++++|+ ++|.
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEEST
T ss_pred             C-ccccccChHHhcCCCCccCC
Confidence            7 888999999999998 7774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=3.4e-36  Score=296.05  Aligned_cols=279  Identities=15%  Similarity=0.200  Sum_probs=168.4

Q ss_pred             chHHHHHHHHHHhcCC-C-CCCCCCCCCCCCCCCCCCCCCCccccceeeC---------CCCCEEEEEcCCCCCccccCC
Q 035878           27 SLTETEALLKWKETLV-N-QSIVQSWVIPASNSSNSTTPSPCRWSGIVCN---------DAGSVTEINLANTGLAGTLHD   95 (496)
Q Consensus        27 ~~~~~~~ll~~k~~~~-~-~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~---------~~~~v~~L~L~~~~l~g~~~~   95 (496)
                      ..+|++||++||+++. | .+.+.+|....     ....++|.|.|+.|+         ...+|++|+|+++.+. .+++
T Consensus        25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~-----~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           25 LRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHCCTTHHHHHHHHT-----TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             CchHHHHHHHHHHhccCCchhhhhhhcccc-----cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            3489999999999984 5 45567884110     012689999999995         2356677777666665 4444


Q ss_pred             CCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC
Q 035878           96 LDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF  175 (496)
Q Consensus        96 ~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  175 (496)
                       .+..+++|+     +|++++|.++ .+|..         ++++++|++|++++|.++ .+|..++++++|++|++++|.
T Consensus        99 -~l~~l~~L~-----~L~L~~n~l~-~lp~~---------~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           99 -QAFRLSHLQ-----HMTIDAAGLM-ELPDT---------MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             -CGGGGTTCS-----EEEEESSCCC-CCCSC---------GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred             -hhhhCCCCC-----EEECCCCCcc-chhHH---------HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence             444455544     3444455554 44433         344444555555555444 444444444444555444444


Q ss_pred             CcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCccc
Q 035878          176 LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSL  255 (496)
Q Consensus       176 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l  255 (496)
                      +.+.+|..+...               ..+..+.++++|++|++++|+++.+|..+..+++|++|++++|++++ +|..+
T Consensus       162 ~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l  225 (328)
T 4fcg_A          162 ELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI  225 (328)
T ss_dssp             TCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred             CccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence            444444433320               00000112566666666666666666666666666666666666653 44456


Q ss_pred             CCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCE
Q 035878          256 KSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVV  335 (496)
Q Consensus       256 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  335 (496)
                      ..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++.+++|+.
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            66666777777776666666666677777777777777777777777777777777777777777777777777777777


Q ss_pred             EEccCCcCc
Q 035878          336 LDLSSNQLS  344 (496)
Q Consensus       336 L~Ls~n~l~  344 (496)
                      +++..+.+.
T Consensus       306 l~l~~~~~~  314 (328)
T 4fcg_A          306 ILVPPHLQA  314 (328)
T ss_dssp             EECCGGGSC
T ss_pred             EeCCHHHHH
Confidence            777766544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.3e-34  Score=280.83  Aligned_cols=295  Identities=21%  Similarity=0.241  Sum_probs=165.3

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5677777777666 4454443  567777777777776666677777777777777777776667777777788888887


Q ss_pred             CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCC--ccccccCCCCCccEEEcccCccccc
Q 035878          221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG--DLEQDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      +|+++.+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++. 
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            777777666554  566666666666665555556666666666666666542  334455555556666665555543 


Q ss_pred             CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCC
Q 035878          299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAL  378 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  378 (496)
                      +|..+.  ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            232221  44555555555555444444555555555555555554444444444455555555555444 344444444


Q ss_pred             CCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc--cchhhhcCCCCCCE
Q 035878          379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG--EIPAQLEKLTSLQS  456 (496)
Q Consensus       379 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~--~~p~~l~~l~~L~~  456 (496)
                      ++|++|++++|++++..+..|....                  .......++.+ ++++|.+..  ..|..|..+.+++.
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l-~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGV-SLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEE-ECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             CCcCEEECCCCcCCccChhhcCCcc------------------cccccccccce-EeecCcccccccCccccccccceeE
Confidence            4444444444444433333322110                  00012344455 566665542  34455666666666


Q ss_pred             EEcccCc
Q 035878          457 MNLSHNN  463 (496)
Q Consensus       457 L~Ls~N~  463 (496)
                      ++|++|+
T Consensus       324 l~L~~N~  330 (330)
T 1xku_A          324 VQLGNYK  330 (330)
T ss_dssp             EEC----
T ss_pred             EEecccC
Confidence            6666663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.1e-34  Score=282.79  Aligned_cols=288  Identities=22%  Similarity=0.248  Sum_probs=156.5

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4666666666665 4444442  566777777777665556666777777777777777766666667777777777777


Q ss_pred             CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCC--ccccccCCCCCccEEEcccCccccc
Q 035878          221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG--DLEQDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      +|+++.+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.++.  ..+..+..+ +|++|++++|.+++ 
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence            777666665543  455555555555554444445555555555555555532  333334433 45555555554443 


Q ss_pred             CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCC
Q 035878          299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAL  378 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  378 (496)
                      +|..+.                          ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus       187 l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          187 IPKDLP--------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             cCcccc--------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            222221                          344444444444444434444444455555555555544444444455


Q ss_pred             CCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccC------CccccccccccCCcCC--ccchhhhcC
Q 035878          379 LNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGN------LVGLQDLLDLSYNSLT--GEIPAQLEK  450 (496)
Q Consensus       379 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~LL~Ls~N~l~--~~~p~~l~~  450 (496)
                      ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..      ...++.+ ++++|.+.  +..|..|..
T Consensus       241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L-~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI-SLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE-ECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce-EeecCcccccccCcccccc
Confidence            55555555555554 44444555555555555555555433333332      2445566 66666665  455666677


Q ss_pred             CCCCCEEEcccCc
Q 035878          451 LTSLQSMNLSHNN  463 (496)
Q Consensus       451 l~~L~~L~Ls~N~  463 (496)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            7777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2.1e-38  Score=326.70  Aligned_cols=354  Identities=19%  Similarity=0.159  Sum_probs=252.1

Q ss_pred             CCCCCCCcEEEccCCcCcc----cCCcCCCCCCCCCEEEccCCCCcccCCcccc-CCC----CCceEecccCcCCc----
Q 035878          136 MTGLLGLKNFLLQDNMLSG----RIPEEIGNCKLLTLLALDGNFLSGPIPSSLG-NLS----DLAVLAVASNQLSG----  202 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~----~L~~L~L~~n~l~~----  202 (496)
                      +..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+. .++    +|++|++++|.++.    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            3456677777777777764    3455566777888888888877654443332 344    58888888887773    


Q ss_pred             ccCccCCCCCCCCEEECCCCCCcc-----cccccc-CCCCCcEEecCCCcccCC----CCcccCCCCCCcEEEccCCCCC
Q 035878          203 EIPANIGTLSKLTDLHLFINKLSG-----LPPQVC-KGGKLINFTASFNHFSGP----IPTSLKSCSSLYRVRLESNELT  272 (496)
Q Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~-~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  272 (496)
                      .++..+..+++|++|++++|.+++     +...+. ..++|++|++++|++++.    ++..+..+++|++|++++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            456777778888888888887765     222221 245788888888877763    3455666788888888888876


Q ss_pred             CccccccC-----CCCCccEEEcccCccccc----CCcCcCCCCCCCEEEccCCcccccC-----CcccCCCCCCCEEEc
Q 035878          273 GDLEQDFG-----IYPNLTYIDLSYNRLQGE----VSPKWGKCQKLTLLGLAGNSIGGKI-----PAEIGSLSQLVVLDL  338 (496)
Q Consensus       273 ~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L  338 (496)
                      +..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            54443332     256888888888888763    4556677888888888888877542     233346788999999


Q ss_pred             cCCcCccc----cchhhcCCCCCCEEeccCCcCccccchhhcC-----CCCCCEEEccCCcCCCC----ChhhhhCCCCC
Q 035878          339 SSNQLSGE----IPAQIGNLTELSTLSLNGNDISGPIPEEIGA-----LLNLDSLDLSMNRLSGP----IPKQIGELRDL  405 (496)
Q Consensus       339 s~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L  405 (496)
                      ++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.    ++..+..+++|
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            99988854    5667777889999999999887654444433     26899999999988865    45667778899


Q ss_pred             CEEeccCccCCccCChhccC-----CccccccccccCCcCCc----cchhhhcCCCCCCEEEcccCcCCcccchhhh---
Q 035878          406 RSLSLSQNNLNGTIPFQIGN-----LVGLQDLLDLSYNSLTG----EIPAQLEKLTSLQSMNLSHNNLSGEIPASLS---  473 (496)
Q Consensus       406 ~~L~Ls~n~l~~~~p~~~~~-----l~~L~~LL~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---  473 (496)
                      ++|++++|.+++..+..+..     .+.|++| ++++|++++    .+|..+..+++|++|++++|++++.-...+.   
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L-~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l  422 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVL-WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  422 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEE-ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence            99999999887665555443     6688888 999999886    6788888889999999999998865333332   


Q ss_pred             --cCCCCCEEeCcCCCCcc
Q 035878          474 --SMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       474 --~l~~L~~L~ls~N~l~g  490 (496)
                        ...+|+.|++.++.+..
T Consensus       423 ~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          423 RQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             TSTTCCCCEEECTTCCCCH
T ss_pred             ccCCcchhheeecccccCH
Confidence              23468888888777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=5.9e-38  Score=323.30  Aligned_cols=351  Identities=22%  Similarity=0.174  Sum_probs=286.9

Q ss_pred             CCCcEEEccCCcCcccCCcC-CCCCCCCCEEEccCCCCcc----cCCccccCCCCCceEecccCcCCcccCccC-CCCC-
Q 035878          140 LGLKNFLLQDNMLSGRIPEE-IGNCKLLTLLALDGNFLSG----PIPSSLGNLSDLAVLAVASNQLSGEIPANI-GTLS-  212 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~-  212 (496)
                      ++|++|++++|.++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56899999999988654443 6789999999999999985    356778889999999999999976444333 2344 


Q ss_pred             ---CCCEEECCCCCCcc-----ccccccCCCCCcEEecCCCcccCCCCccc-----CCCCCCcEEEccCCCCCCcc----
Q 035878          213 ---KLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFNHFSGPIPTSL-----KSCSSLYRVRLESNELTGDL----  275 (496)
Q Consensus       213 ---~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~----  275 (496)
                         +|++|++++|+++.     ++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999984     68888999999999999999876444332     23568999999999998743    


Q ss_pred             ccccCCCCCccEEEcccCcccccCCcCcC-----CCCCCCEEEccCCccccc----CCcccCCCCCCCEEEccCCcCccc
Q 035878          276 EQDFGIYPNLTYIDLSYNRLQGEVSPKWG-----KCQKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGE  346 (496)
Q Consensus       276 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~  346 (496)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            55566789999999999998765444443     356999999999999864    467778899999999999998864


Q ss_pred             c-----chhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCCChhhhhC-----CCCCCEEeccC
Q 035878          347 I-----PAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGPIPKQIGE-----LRDLRSLSLSQ  412 (496)
Q Consensus       347 ~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----~~~L~~L~Ls~  412 (496)
                      .     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            3     23334689999999999999864    6777888999999999999997655544443     36999999999


Q ss_pred             ccCCcc----CChhccCCccccccccccCCcCCccchhhhcC-----CCCCCEEEcccCcCCc----ccchhhhcCCCCC
Q 035878          413 NNLNGT----IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK-----LTSLQSMNLSHNNLSG----EIPASLSSMLSLV  479 (496)
Q Consensus       413 n~l~~~----~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~  479 (496)
                      |.+++.    ++..+..+++|++| ++++|++++..+..+..     .++|++|++++|++++    .+|..+..+++|+
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCchHHHHHHHHHHhhCCCccEE-EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            999876    56677788999999 99999999766655543     7899999999999997    7899999999999


Q ss_pred             EEeCcCCCCccc
Q 035878          480 AVNLSYNNLEGP  491 (496)
Q Consensus       480 ~L~ls~N~l~g~  491 (496)
                      +||+++|++++.
T Consensus       402 ~L~l~~N~i~~~  413 (461)
T 1z7x_W          402 ELDLSNNCLGDA  413 (461)
T ss_dssp             EEECCSSSCCHH
T ss_pred             EEECCCCCCCHH
Confidence            999999999764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.7e-33  Score=277.47  Aligned_cols=288  Identities=21%  Similarity=0.284  Sum_probs=214.3

Q ss_pred             CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCC
Q 035878          165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASF  244 (496)
Q Consensus       165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~  244 (496)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++                  
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------   92 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK------------------   92 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------------------
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc------------------
Confidence            4666666666665 4555443  466666666666665555556666666666666665555                  


Q ss_pred             CcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc--cc
Q 035878          245 NHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG--GK  322 (496)
Q Consensus       245 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~  322 (496)
                           ..|..+.++++|++|++++|+++. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++  +.
T Consensus        93 -----~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  164 (332)
T 2ft3_A           93 -----IHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF  164 (332)
T ss_dssp             -----ECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred             -----cCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence                 334444555555555555555542 232222  56666677766666555555667777777777777775  35


Q ss_pred             CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCC
Q 035878          323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGEL  402 (496)
Q Consensus       323 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~  402 (496)
                      .+..+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            66677777 88999999999885 555543  799999999999998888899999999999999999998888889999


Q ss_pred             CCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcC------CCCCCEEEcccCcCC--cccchhhhc
Q 035878          403 RDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK------LTSLQSMNLSHNNLS--GEIPASLSS  474 (496)
Q Consensus       403 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~--~~~p~~l~~  474 (496)
                      ++|++|++++|+++ .+|..+..+++|+++ ++++|++++..+..|..      ..+|+.|++++|++.  +..|..|..
T Consensus       241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVV-YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             TTCCEEECCSSCCC-BCCTTGGGCTTCCEE-ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCEEECCCCcCe-ecChhhhcCccCCEE-ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            99999999999998 889899999999999 99999999776666655      367999999999998  677889999


Q ss_pred             CCCCCEEeCcCCC
Q 035878          475 MLSLVAVNLSYNN  487 (496)
Q Consensus       475 l~~L~~L~ls~N~  487 (496)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            9999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.9e-33  Score=273.37  Aligned_cols=288  Identities=23%  Similarity=0.284  Sum_probs=177.6

Q ss_pred             CCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecC
Q 035878          165 LLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTAS  243 (496)
Q Consensus       165 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~  243 (496)
                      ++++++++++.++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|+++++ |..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            6788888888877 4665554  6788888888888876666788888888888888888774 6667777777777777


Q ss_pred             CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc--cCCcCcCCCCCCCEEEccCCcccc
Q 035878          244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG--EVSPKWGKCQKLTLLGLAGNSIGG  321 (496)
Q Consensus       244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~  321 (496)
                      +|+++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++.
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            77766 3444333  566666666666666555556666666666666666542  444455555555555555555552


Q ss_pred             cCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhC
Q 035878          322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE  401 (496)
Q Consensus       322 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  401 (496)
                       +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..+                        ..+..
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~~~~~  238 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN------------------------GSLAN  238 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT------------------------TTGGG
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh------------------------hhccC
Confidence             232222  445555555555544444444445555555555554444444                        44444


Q ss_pred             CCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhc------CCCCCCEEEcccCcCCc--ccchhhh
Q 035878          402 LRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE------KLTSLQSMNLSHNNLSG--EIPASLS  473 (496)
Q Consensus       402 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~------~l~~L~~L~Ls~N~l~~--~~p~~l~  473 (496)
                      +++|++|++++|+++ .+|..+..+++|+++ ++++|++++..+..|.      ..+.++.|++++|++..  ..|..|.
T Consensus       239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L-~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVV-YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEE-ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCEEECCCCcCc-cCChhhccCCCcCEE-ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            455555555555544 444445555555555 5555555543333332      24688999999999964  5678899


Q ss_pred             cCCCCCEEeCcCCC
Q 035878          474 SMLSLVAVNLSYNN  487 (496)
Q Consensus       474 ~l~~L~~L~ls~N~  487 (496)
                      .+..++.+++++|+
T Consensus       317 ~~~~l~~l~L~~N~  330 (330)
T 1xku_A          317 CVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCCCGGGEEC----
T ss_pred             cccceeEEEecccC
Confidence            99999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=270.00  Aligned_cols=253  Identities=17%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            34444555554444444445555555555555555554444445555555555555555543333334555555555555


Q ss_pred             CCCCccccc--cccCCCCCcEEecCCC-cccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc
Q 035878          221 INKLSGLPP--QVCKGGKLINFTASFN-HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG  297 (496)
Q Consensus       221 ~n~l~~lp~--~l~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  297 (496)
                      +|+++++|.  .+..+++|++|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            555554443  3333444444444444 2333333344444445555555554444444444444455555555544432


Q ss_pred             cCCcCcCCCCCCCEEEccCCcccccCCccc---CCCCCCCEEEccCCcCcc----ccchhhcCCCCCCEEeccCCcCccc
Q 035878          298 EVSPKWGKCQKLTLLGLAGNSIGGKIPAEI---GSLSQLVVLDLSSNQLSG----EIPAQIGNLTELSTLSLNGNDISGP  370 (496)
Q Consensus       298 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~  370 (496)
                      ..+..+..+++|++|++++|++++..+..+   .....++.++++++.+++    .+|..+..+++|++|++++|+++ .
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~  291 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S  291 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence            222222234445555555554443322221   123345555555555443    23444445555555555555554 2


Q ss_pred             cchh-hcCCCCCCEEEccCCcCCCC
Q 035878          371 IPEE-IGALLNLDSLDLSMNRLSGP  394 (496)
Q Consensus       371 ~~~~-~~~l~~L~~L~Ls~n~l~~~  394 (496)
                      +|.. +..+++|++|++++|++.+.
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccCc
Confidence            3322 24444555555555544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.98  E-value=7.1e-35  Score=309.81  Aligned_cols=376  Identities=16%  Similarity=0.132  Sum_probs=272.7

Q ss_pred             CCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCC-CCC-CcEEEccCCc-Ccc-cCCcCCCCCCCCCEEEccCCC
Q 035878          100 SFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTG-LLG-LKNFLLQDNM-LSG-RIPEEIGNCKLLTLLALDGNF  175 (496)
Q Consensus       100 ~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~-l~~-L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~  175 (496)
                      .+++|+     +|+|++|.+++..+..         +.. +++ |++|++++|. ++. .++....++++|++|+|++|.
T Consensus       110 ~~~~L~-----~L~L~~~~i~~~~~~~---------l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  175 (592)
T 3ogk_B          110 NLRQLK-----SVHFRRMIVSDLDLDR---------LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS  175 (592)
T ss_dssp             HCTTCC-----EEEEESCBCCHHHHHH---------HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred             hCCCCC-----eEEeeccEecHHHHHH---------HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence            456666     5666777666544333         223 333 8888888775 221 122223467888888888887


Q ss_pred             Cccc----CCccccCCCCCceEecccCcCC----cccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcc
Q 035878          176 LSGP----IPSSLGNLSDLAVLAVASNQLS----GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF  247 (496)
Q Consensus       176 l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l  247 (496)
                      +++.    ++..+..+++|++|++++|.++    +.++..+.++++|++|++++|.+.++|..+..+++|++|+++....
T Consensus       176 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~  255 (592)
T 3ogk_B          176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE  255 (592)
T ss_dssp             EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCC
T ss_pred             ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccc
Confidence            7655    3334556788888888888876    2344445677888888888888888887777888888888875332


Q ss_pred             c---CCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCC-cCcCCCCCCCEEEccCCcccccC
Q 035878          248 S---GPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS-PKWGKCQKLTLLGLAGNSIGGKI  323 (496)
Q Consensus       248 ~---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~  323 (496)
                      .   +..+..+..+++|+.+++.++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.+
T Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l  334 (592)
T 3ogk_B          256 DIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL  334 (592)
T ss_dssp             CTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred             ccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHH
Confidence            2   2344567778888888888753 34567777788999999999998765433 33578899999999843222334


Q ss_pred             CcccCCCCCCCEEEccC-----------CcCccc-cchhhcCCCCCCEEeccCCcCccccchhhcC-CCCCCEEEcc---
Q 035878          324 PAEIGSLSQLVVLDLSS-----------NQLSGE-IPAQIGNLTELSTLSLNGNDISGPIPEEIGA-LLNLDSLDLS---  387 (496)
Q Consensus       324 ~~~l~~l~~L~~L~Ls~-----------n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls---  387 (496)
                      +.....+++|++|++++           |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++   
T Consensus       335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  414 (592)
T 3ogk_B          335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD  414 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred             HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence            44446788999999993           566643 3333556899999999999998877777766 8999999996   


Q ss_pred             -CCcCCCC-----ChhhhhCCCCCCEEeccCcc--CCccCChhccC-CccccccccccCCcCCc-cchhhhcCCCCCCEE
Q 035878          388 -MNRLSGP-----IPKQIGELRDLRSLSLSQNN--LNGTIPFQIGN-LVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSM  457 (496)
Q Consensus       388 -~n~l~~~-----~~~~l~~~~~L~~L~Ls~n~--l~~~~p~~~~~-l~~L~~LL~Ls~N~l~~-~~p~~l~~l~~L~~L  457 (496)
                       .|.+++.     ++..+.++++|++|++++|.  +++..+..+.. +++|++| ++++|++++ .++..+.++++|++|
T Consensus       415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE-EECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe-eccCCCCCHHHHHHHHhcCcccCee
Confidence             6778763     45557789999999998643  77666655554 8889999 999999987 356667889999999


Q ss_pred             EcccCcCCcc-cchhhhcCCCCCEEeCcCCCCccc
Q 035878          458 NLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLEGP  491 (496)
Q Consensus       458 ~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~  491 (496)
                      ++++|++++. ++..+..+++|++|++++|++++.
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9999999765 455567899999999999998865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.98  E-value=3e-32  Score=270.87  Aligned_cols=276  Identities=18%  Similarity=0.216  Sum_probs=149.3

Q ss_pred             CCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccc-cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEE
Q 035878          187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR  265 (496)
Q Consensus       187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  265 (496)
                      ++...+.+++++.++ .+|..+.  ++|++|++++|+++++|. .+..+++|++|++++|++++..|..+.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            444455666666666 4555443  467777777777766554 556666666666666666665556666666666666


Q ss_pred             ccCCCCCCccccccCCCCCccEEEcccCcccccCC-cCcCCCCCCCEEEccCC-cccccCCcccCCCCCCCEEEccCCcC
Q 035878          266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS-PKWGKCQKLTLLGLAGN-SIGGKIPAEIGSLSQLVVLDLSSNQL  343 (496)
Q Consensus       266 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l  343 (496)
                      +++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++..+..++.+++|++|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            66666665444446666666666666666654322 24556666666666666 34444455556666666666666666


Q ss_pred             ccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhh---CCCCCCEEeccCccCCc---
Q 035878          344 SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG---ELRDLRSLSLSQNNLNG---  417 (496)
Q Consensus       344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~~~~L~~L~Ls~n~l~~---  417 (496)
                      ++..|..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+..+.   ....++.++++++.+++   
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l  266 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL  266 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence            655555566666666666666665432222233455666666666665543322221   23344444444444433   


Q ss_pred             -cCChhccCCccccccccccCCcCCccchhh-hcCCCCCCEEEcccCcCCcc
Q 035878          418 -TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQ-LEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       418 -~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~  467 (496)
                       .+|..+..+++|++| ++++|+++ .+|.. |.++++|++|++++|++++.
T Consensus       267 ~~l~~~l~~l~~L~~L-~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          267 FQVMKLLNQISGLLEL-EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHHHTCTTCCEE-ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhhHHHHhcccCCCEE-ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence             233334444444444 44444444 22322 24444444444444444433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.3e-31  Score=257.98  Aligned_cols=247  Identities=20%  Similarity=0.193  Sum_probs=129.7

Q ss_pred             EEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcc--cCccCCCCCCCCEEECCC
Q 035878          144 NFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGE--IPANIGTLSKLTDLHLFI  221 (496)
Q Consensus       144 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~  221 (496)
                      .++.+++.++ .+|..+.  ++|++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4444444444 3333222  3555555555555533333345555555555555555421  234444556666666666


Q ss_pred             CCCccccccccCCCCCcEEecCCCcccCCCC-cccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc-cC
Q 035878          222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIP-TSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG-EV  299 (496)
Q Consensus       222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~  299 (496)
                      |.++.+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            6665555555555555555555555554332 345555566666666665555555555555556666666555554 34


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL  379 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  379 (496)
                      |..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            55555555555555555555555455555555555555555555544444455555555555555555555554444442


Q ss_pred             -CCCEEEccCCcCCC
Q 035878          380 -NLDSLDLSMNRLSG  393 (496)
Q Consensus       380 -~L~~L~Ls~n~l~~  393 (496)
                       +|++|++++|.+++
T Consensus       248 ~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          248 SSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTCCEEECTTCCEEC
T ss_pred             ccCCEEEccCCCeec
Confidence             45555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=9e-31  Score=254.92  Aligned_cols=246  Identities=24%  Similarity=0.286  Sum_probs=145.2

Q ss_pred             CEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc---cccccCCCCCcEEecC
Q 035878          167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL---PPQVCKGGKLINFTAS  243 (496)
Q Consensus       167 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~l~  243 (496)
                      +.++.+++.++ .+|..+.  ++|++|++++|+++...+..|.++++|++|++++|+++.+   |..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            57788888777 5665443  6788888888888754445577888888888888887753   4555566677777777


Q ss_pred             CCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccc-
Q 035878          244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG-  321 (496)
Q Consensus       244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-  321 (496)
                      +|.+++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ 
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            776653 44556666666666666666654433 345555556666665555555555555555555555555555554 


Q ss_pred             cCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhC
Q 035878          322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE  401 (496)
Q Consensus       322 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  401 (496)
                      ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            34445555555555555555555444445555555555555555555444444444555555555555555444444444


Q ss_pred             CC-CCCEEeccCccCC
Q 035878          402 LR-DLRSLSLSQNNLN  416 (496)
Q Consensus       402 ~~-~L~~L~Ls~n~l~  416 (496)
                      ++ +|++|++++|+++
T Consensus       246 ~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCTTCCEEECTTCCEE
T ss_pred             hhccCCEEEccCCCee
Confidence            42 4555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.6e-30  Score=253.99  Aligned_cols=225  Identities=23%  Similarity=0.274  Sum_probs=147.9

Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878          259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL  338 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  338 (496)
                      ..++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34444444444444 33333444444455555544444 44444444555555555555554 34444555555555555


Q ss_pred             cCCcCccccchhhc---------CCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEe
Q 035878          339 SSNQLSGEIPAQIG---------NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS  409 (496)
Q Consensus       339 s~n~l~~~~~~~l~---------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~  409 (496)
                      ++|.+.+.+|..+.         .+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+..+++|++|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence            55544444444433         4777888888888777 677777777888888888888774 555677778888888


Q ss_pred             ccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCc
Q 035878          410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       410 Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  489 (496)
                      +++|++.+.+|..++.+++|++| ++++|++.+.+|..+.++++|++|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L-~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRL-ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEE-ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEE-ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            88887777788778888888887 88888877788877888888888888888888888888888888888887766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=3.7e-30  Score=247.93  Aligned_cols=253  Identities=21%  Similarity=0.174  Sum_probs=160.6

Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCC
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN  269 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n  269 (496)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++++ ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56677777766 455433  457777777777777754 34666677777777777777666666777777777777777


Q ss_pred             C-CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccc
Q 035878          270 E-LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIP  348 (496)
Q Consensus       270 ~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  348 (496)
                      . +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 555556666667777777777777766666666666777777777777665555556666677777777776665444


Q ss_pred             hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcc
Q 035878          349 AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVG  428 (496)
Q Consensus       349 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  428 (496)
                      ..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++....+.. .-...
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~  249 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW  249 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence            45666666777777777666666666666666666666666666655555666666666666666665332211 11122


Q ss_pred             ccccccccCCcCCccchhhh
Q 035878          429 LQDLLDLSYNSLTGEIPAQL  448 (496)
Q Consensus       429 L~~LL~Ls~N~l~~~~p~~l  448 (496)
                      ++.+ ..+.+.+.+..|..+
T Consensus       250 l~~~-~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          250 LQKF-RGSSSEVPCSLPQRL  268 (285)
T ss_dssp             HHHC-CSEECCCBEEESGGG
T ss_pred             HHhc-ccccCccccCCchHh
Confidence            3344 444555554455444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=2.1e-29  Score=242.64  Aligned_cols=254  Identities=21%  Similarity=0.173  Sum_probs=159.3

Q ss_pred             CEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecCCC
Q 035878          167 TLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTASFN  245 (496)
Q Consensus       167 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n  245 (496)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.++++ |..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45666666665 345433  35667777777766655555666667777777777766663 555666667777777766


Q ss_pred             c-ccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC
Q 035878          246 H-FSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP  324 (496)
Q Consensus       246 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  324 (496)
                      . ++...|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 555556666666777777777777666666666666677777777776665555556666677777777776665555


Q ss_pred             cccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCC
Q 035878          325 AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRD  404 (496)
Q Consensus       325 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~  404 (496)
                      ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+.. .-...
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~  249 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW  249 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence            55666667777777777766666666666677777777777776555555666667777777777665433211 11122


Q ss_pred             CCEEeccCccCCccCChhcc
Q 035878          405 LRSLSLSQNNLNGTIPFQIG  424 (496)
Q Consensus       405 L~~L~Ls~n~l~~~~p~~~~  424 (496)
                      ++.+..+.+.+....|..+.
T Consensus       250 l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          250 LQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             HHHCCSEECCCBEEESGGGT
T ss_pred             HHhcccccCccccCCchHhC
Confidence            33334555566555565543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=6.1e-29  Score=255.35  Aligned_cols=248  Identities=20%  Similarity=0.200  Sum_probs=187.8

Q ss_pred             CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878          213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY  292 (496)
Q Consensus       213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  292 (496)
                      ..+.++.++..++.+|..+.  +++++|++++|++++..|..|.++++|++|+|++|.+++..+..|..+++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            35678888888888887654  6788888888888887778888888888888888888877777788888888888888


Q ss_pred             CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCc-CccccchhhcCCCCCCEEeccCCcCcccc
Q 035878          293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ-LSGEIPAQIGNLTELSTLSLNGNDISGPI  371 (496)
Q Consensus       293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  371 (496)
                      |.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..+..+++|++|++++|++++ +
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence            88887666667778888888888888876666677788888888888744 443333457777888888888887774 3


Q ss_pred             chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878          372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL  451 (496)
Q Consensus       372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l  451 (496)
                      | .+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++| +|++|++++..+..+..+
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL-NLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCSCCCTTSSTTC
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE-ECCCCcCCccChHHhccc
Confidence            3 46667777777777777777667777777777777777777777767777777777777 777777776666666777


Q ss_pred             CCCCEEEcccCcCC
Q 035878          452 TSLQSMNLSHNNLS  465 (496)
Q Consensus       452 ~~L~~L~Ls~N~l~  465 (496)
                      ++|++|+|++|++.
T Consensus       290 ~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          290 RYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEccCCCcC
Confidence            77777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.2e-32  Score=292.61  Aligned_cols=391  Identities=14%  Similarity=0.098  Sum_probs=291.9

Q ss_pred             CCCEEEEEcCCCCCccccCCCCCCC-CCC-CceeccceEEccCCc-ccc-cCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 035878           76 AGSVTEINLANTGLAGTLHDLDFSS-FPN-LLRFDVYELDVSRNN-MTG-GIDPRLFPDDKNQPMTGLLGLKNFLLQDNM  151 (496)
Q Consensus        76 ~~~v~~L~L~~~~l~g~~~~~~l~~-l~~-L~~L~L~~L~Ls~n~-l~~-~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~  151 (496)
                      ..++++|+|+++.+++.... .+.. ++. |+     +|++++|. ++. .++..         ..++++|++|+|++|.
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~-----~L~L~~~~~~~~~~l~~~---------~~~~~~L~~L~L~~~~  175 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLD-RLAKARADDLE-----TLKLDKCSGFTTDGLLSI---------VTHCRKIKTLLMEESS  175 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHH-HHHHHHGGGCC-----EEEEESCEEEEHHHHHHH---------HHHCTTCSEEECTTCE
T ss_pred             CCCCCeEEeeccEecHHHHH-HHHHhccccCc-----EEECcCCCCcCHHHHHHH---------HhhCCCCCEEECcccc
Confidence            35799999999987765433 3433 333 66     66777765 221 11110         2468999999999999


Q ss_pred             Cccc----CCcCCCCCCCCCEEEccCCCCc----ccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCC
Q 035878          152 LSGR----IPEEIGNCKLLTLLALDGNFLS----GPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINK  223 (496)
Q Consensus       152 l~~~----~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (496)
                      +++.    ++..+..+++|++|++++|.++    +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++...
T Consensus       176 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~  254 (592)
T 3ogk_B          176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLN  254 (592)
T ss_dssp             EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCC
T ss_pred             ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccc
Confidence            8765    3334567899999999999997    3455556789999999999999885 77888899999999998643


Q ss_pred             Cc----cccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccEEEcccCccccc
Q 035878          224 LS----GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       224 l~----~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      ..    ..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.
T Consensus       255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~  333 (592)
T 3ogk_B          255 EDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG  333 (592)
T ss_dssp             CCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred             cccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHH
Confidence            22    255667788999999998853 34677888889999999999999765443 3468899999999994433333


Q ss_pred             CCcCcCCCCCCCEEEcc-----------CCcccccC-CcccCCCCCCCEEEccCCcCccccchhhcC-CCCCCEEecc--
Q 035878          299 VSPKWGKCQKLTLLGLA-----------GNSIGGKI-PAEIGSLSQLVVLDLSSNQLSGEIPAQIGN-LTELSTLSLN--  363 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~-----------~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls--  363 (496)
                      ++.....+++|++|+++           .+.+++.. +.....+++|++|+++.|.+++..+..+.. +++|++|+++  
T Consensus       334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL  413 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred             HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence            44444678999999999           35666432 223456899999999999999877777765 9999999996  


Q ss_pred             --CCcCccc-----cchhhcCCCCCCEEEccCCc--CCCCChhhhh-CCCCCCEEeccCccCCc-cCChhccCCcccccc
Q 035878          364 --GNDISGP-----IPEEIGALLNLDSLDLSMNR--LSGPIPKQIG-ELRDLRSLSLSQNNLNG-TIPFQIGNLVGLQDL  432 (496)
Q Consensus       364 --~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~-~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L  432 (496)
                        .|.+++.     ++..+..+++|++|++++|.  +++..+..+. .+++|++|++++|++++ .++..+..+++|++|
T Consensus       414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence              6788763     44457779999999998654  6665555554 48999999999999987 345566889999999


Q ss_pred             ccccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcccchhh-hcCCCCC--EEeCc
Q 035878          433 LDLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGEIPASL-SSMLSLV--AVNLS  484 (496)
Q Consensus       433 L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~--~L~ls  484 (496)
                       ++++|.+++. ++..+..+++|++|++++|++++.-...+ ..++.+.  .++.+
T Consensus       494 -~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          494 -EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             -EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             -eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence             9999999865 45556789999999999999987633333 3455543  44444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=6.4e-29  Score=254.35  Aligned_cols=248  Identities=24%  Similarity=0.234  Sum_probs=205.9

Q ss_pred             CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878          213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY  292 (496)
Q Consensus       213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  292 (496)
                      ..+.++..+..++.+|..+.  ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            45688999999999998765  6889999999999888888899999999999999999887778888899999999999


Q ss_pred             CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc-chhhcCCCCCCEEeccCCcCcccc
Q 035878          293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI-PAQIGNLTELSTLSLNGNDISGPI  371 (496)
Q Consensus       293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~  371 (496)
                      |.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|...+.+ +..|..+++|++|++++|+++ .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            9988777777888899999999999988777778888889999999885433344 446888888888888888887 44


Q ss_pred             chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878          372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL  451 (496)
Q Consensus       372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l  451 (496)
                      | .+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++| +|++|++++..+..+..+
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI-NLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE-ECTTSCCCCCCTTTTSSC
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE-ECCCCCCCccChhHhccc
Confidence            5 46778888888888888887778888888888888888888887777788888888888 888888887667777888


Q ss_pred             CCCCEEEcccCcCC
Q 035878          452 TSLQSMNLSHNNLS  465 (496)
Q Consensus       452 ~~L~~L~Ls~N~l~  465 (496)
                      ++|++|+|++|++.
T Consensus       279 ~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          279 HHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEcCCCCcc
Confidence            88888888888875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7.7e-29  Score=254.63  Aligned_cols=248  Identities=21%  Similarity=0.177  Sum_probs=222.5

Q ss_pred             CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccc-cccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878          189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGL-PPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE  267 (496)
Q Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  267 (496)
                      ..+.++.++..++ .+|..+.  +++++|++++|+++++ |..+..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888887 5776654  6999999999999994 6778899999999999999999888999999999999999


Q ss_pred             CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC-cccccCCcccCCCCCCCEEEccCCcCccc
Q 035878          268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN-SIGGKIPAEIGSLSQLVVLDLSSNQLSGE  346 (496)
Q Consensus       268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  346 (496)
                      +|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++| .+....+..|..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999887788999999999999999999887778999999999999995 45544455789999999999999999854


Q ss_pred             cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCC
Q 035878          347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL  426 (496)
Q Consensus       347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l  426 (496)
                       | .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence             4 47889999999999999999889999999999999999999998889999999999999999999997777888899


Q ss_pred             ccccccccccCCcCCc
Q 035878          427 VGLQDLLDLSYNSLTG  442 (496)
Q Consensus       427 ~~L~~LL~Ls~N~l~~  442 (496)
                      ++|+.+ +|++|.+..
T Consensus       290 ~~L~~L-~L~~Np~~C  304 (452)
T 3zyi_A          290 RYLVEL-HLHHNPWNC  304 (452)
T ss_dssp             TTCCEE-ECCSSCEEC
T ss_pred             cCCCEE-EccCCCcCC
Confidence            999999 999998874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=9.3e-29  Score=253.13  Aligned_cols=248  Identities=22%  Similarity=0.227  Sum_probs=222.7

Q ss_pred             CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878          189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE  267 (496)
Q Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  267 (496)
                      ..+.++..+..++ .+|..+.  +++++|++++|+++.++ ..+..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4568888888887 6777664  68999999999999954 678889999999999999998888899999999999999


Q ss_pred             CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEccCCcCccc
Q 035878          268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS-IGGKIPAEIGSLSQLVVLDLSSNQLSGE  346 (496)
Q Consensus       268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  346 (496)
                      +|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+ +....+..|.++++|++|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999998877789999999999999999998888889999999999999954 55445557899999999999999998 4


Q ss_pred             cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCC
Q 035878          347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL  426 (496)
Q Consensus       347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l  426 (496)
                      +| .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            55 47889999999999999998889999999999999999999998888899999999999999999998777888999


Q ss_pred             ccccccccccCCcCCc
Q 035878          427 VGLQDLLDLSYNSLTG  442 (496)
Q Consensus       427 ~~L~~LL~Ls~N~l~~  442 (496)
                      ++|+.+ +|++|.+..
T Consensus       279 ~~L~~L-~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERI-HLHHNPWNC  293 (440)
T ss_dssp             TTCCEE-ECCSSCEEC
T ss_pred             cCCCEE-EcCCCCccC
Confidence            999999 999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=7.6e-31  Score=256.78  Aligned_cols=257  Identities=22%  Similarity=0.212  Sum_probs=143.6

Q ss_pred             CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878          142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI  221 (496)
Q Consensus       142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (496)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455666666654444455566777777777777776666677777777777777777765443  66777777777777


Q ss_pred             CCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCc
Q 035878          222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP  301 (496)
Q Consensus       222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  301 (496)
                      |++++++.    .++|++|++++|++++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus        90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           90 NYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            77766552    25666666666666543322   234555555555555554444555555555555555555544333


Q ss_pred             Cc-CCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878          302 KW-GKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN  380 (496)
Q Consensus       302 ~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  380 (496)
                      .+ ..+++|++|++++|.+++.                         +. ...+++|++|++++|++++ +|..+..+++
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~-------------------------~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  215 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDV-------------------------KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG  215 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEE-------------------------EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred             HHhhccCcCCEEECCCCcCccc-------------------------cc-ccccccCCEEECCCCcCCc-chhhhcccCc
Confidence            33 2344455555554444432                         11 1124455555555555542 2233444555


Q ss_pred             CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC-ccCChhccCCcccccccccc
Q 035878          381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN-GTIPFQIGNLVGLQDLLDLS  436 (496)
Q Consensus       381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~LL~Ls  436 (496)
                      |++|++++|+++ .+|..+..+++|++|++++|++. +.+|..+..++.|+.+ +++
T Consensus       216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l-~l~  270 (317)
T 3o53_A          216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV-AKQ  270 (317)
T ss_dssp             CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH-HHH
T ss_pred             ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE-ECC
Confidence            555555555555 34444555555555555555555 4455555555555555 555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=3.2e-28  Score=257.36  Aligned_cols=268  Identities=27%  Similarity=0.351  Sum_probs=165.2

Q ss_pred             CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      .++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            36899999999998 6777665  78999999999988 4665   5688999999999887 4555   6788889999


Q ss_pred             CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878          220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      ++|+++++|.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++. |.   .+++|+.|++++|.+++ +
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred             cCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence            8888888776   45677777777777664 3432   35566666666665532 21   22445555555555543 2


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL  379 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  379 (496)
                      |   ..+++|+.|                        ++++|.+++ +|.   ..++|+.|++++|.++ .+|..   ++
T Consensus       177 ~---~~~~~L~~L------------------------~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~  221 (622)
T 3g06_A          177 P---MLPSGLQEL------------------------SVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PS  221 (622)
T ss_dssp             C---CCCTTCCEE------------------------ECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CT
T ss_pred             c---ccCCCCcEE------------------------ECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CC
Confidence            2   223444444                        444444442 222   1244555555555554 23321   24


Q ss_pred             CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878          380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL  459 (496)
Q Consensus       380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L  459 (496)
                      +|++|++++|++++ +|   ..+++|++|++++|+++ .+|.   .+++|+.| +|++|+++ .+|..+.++++|++|+|
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L-~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL-SVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE-ECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE-eCCCCCCC-cCCHHHhhccccCEEEe
Confidence            55556666665553 33   23455666666666665 3443   34556666 66666666 55666666666666666


Q ss_pred             ccCcCCcccchhhhcC
Q 035878          460 SHNNLSGEIPASLSSM  475 (496)
Q Consensus       460 s~N~l~~~~p~~l~~l  475 (496)
                      ++|++++.+|..+..+
T Consensus       292 ~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          292 EGNPLSERTLQALREI  307 (622)
T ss_dssp             CSCCCCHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhc
Confidence            6666666666655443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=2.8e-31  Score=259.26  Aligned_cols=254  Identities=21%  Similarity=0.208  Sum_probs=136.4

Q ss_pred             CCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCccc-CCCCcccC-------CCCCCcEEEccCCCCCCcccccc
Q 035878          208 IGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFS-GPIPTSLK-------SCSSLYRVRLESNELTGDLEQDF  279 (496)
Q Consensus       208 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~~  279 (496)
                      ++..++|++|++++|.+ .+|..+...  ++.|++++|+++ +.+|..+.       ++++|++|++++|++++.+|..+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            34456677777777777 666555433  666666666662 33444333       45555555555555555444443


Q ss_pred             --CCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCC
Q 035878          280 --GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTEL  357 (496)
Q Consensus       280 --~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  357 (496)
                        ..+++|++|++++|.+++. |..+..+.                   ...+++|++|++++|++++..|..++.+++|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence              4455555555555555443 33333330                   0001455555555555554444455555555


Q ss_pred             CEEeccCCcCccc--cchhh--cCCCCCCEEEccCCcCCCC--Ch-hhhhCCCCCCEEeccCccCCccCC-hhccCCccc
Q 035878          358 STLSLNGNDISGP--IPEEI--GALLNLDSLDLSMNRLSGP--IP-KQIGELRDLRSLSLSQNNLNGTIP-FQIGNLVGL  429 (496)
Q Consensus       358 ~~L~Ls~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~--~~-~~l~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L  429 (496)
                      ++|++++|++.+.  .+..+  ..+++|++|++++|++++.  ++ ..+..+++|++|++++|++++.+| ..+..+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            5555555554433  12222  4555555555555555521  11 223455666666666666665553 334445666


Q ss_pred             cccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878          430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       430 ~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                      ++| ++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       256 ~~L-~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          256 NSL-NLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CEE-ECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CEE-ECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            666 66666666 5555554  5666777777777654 44 6666777777777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=5.3e-31  Score=257.26  Aligned_cols=251  Identities=20%  Similarity=0.226  Sum_probs=171.3

Q ss_pred             cccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc--cccccc-------CCCCCcEEecCCCcccCCCCc
Q 035878          183 SLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG--LPPQVC-------KGGKLINFTASFNHFSGPIPT  253 (496)
Q Consensus       183 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--lp~~l~-------~l~~L~~L~l~~n~l~~~~p~  253 (496)
                      .++..++|++|++++|.+  .+|..+...  |++|++++|.+..  +|..+.       .+++|++|++++|++++.+|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            355678999999999999  677766544  9999999999965  777665       789999999999999999998


Q ss_pred             cc--CCCCCCcEEEccCCCCCCccccccCCC-----CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcc
Q 035878          254 SL--KSCSSLYRVRLESNELTGDLEQDFGIY-----PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE  326 (496)
Q Consensus       254 ~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  326 (496)
                      .+  ..+++|++|++++|++++. |..++.+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+..+  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence            76  8999999999999999987 6666554     566666666666655555555555555555555555443210  


Q ss_pred             cCCCCCCCEEEccCCcCccccchhh--cCCCCCCEEeccCCcCcc--ccc-hhhcCCCCCCEEEccCCcCCCCCh-hhhh
Q 035878          327 IGSLSQLVVLDLSSNQLSGEIPAQI--GNLTELSTLSLNGNDISG--PIP-EEIGALLNLDSLDLSMNRLSGPIP-KQIG  400 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~  400 (496)
                                          .+..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++..| ..+.
T Consensus       191 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          191 --------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             --------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             --------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence                                12222  445555555555555542  111 223345566666666666665443 3344


Q ss_pred             CCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          401 ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       401 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      .+++|++|++++|+++ .+|..+.  ++|++| ++++|++++. |. +..+++|++|++++|++++
T Consensus       251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L-~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVL-DLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCTTCCEEECTTSCCS-SCCSSCC--SEEEEE-ECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hcCCCCEEECCCCccC-hhhhhcc--CCceEE-ECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5667777777777776 6666555  677777 7777777754 55 7777777777887777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=1.1e-27  Score=253.26  Aligned_cols=263  Identities=27%  Similarity=0.319  Sum_probs=200.6

Q ss_pred             CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878          164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS  243 (496)
Q Consensus       164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~  243 (496)
                      .++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++++|.   .+++|++|+++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence            35889999999988 6777665  78899999988887 4555   46788888888888877765   44556666666


Q ss_pred             CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC
Q 035878          244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI  323 (496)
Q Consensus       244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  323 (496)
                      +|++++. |.   .                        +++|++|++++|.+++ +|..   +++|++|++++|++++ +
T Consensus       110 ~N~l~~l-~~---~------------------------l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l  156 (622)
T 3g06_A          110 SNPLTHL-PA---L------------------------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-L  156 (622)
T ss_dssp             SCCCCCC-CC---C------------------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred             CCcCCCC-CC---C------------------------CCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-c
Confidence            6655532 22   2                        3455555555555553 2322   3667777777777764 3


Q ss_pred             CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCC
Q 035878          324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELR  403 (496)
Q Consensus       324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~  403 (496)
                      |.   ..++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|.   .++
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~  221 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPS  221 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCT
T ss_pred             CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCC
Confidence            32   34678889999998884 55   457899999999999985 5543   478999999999999 4554   358


Q ss_pred             CCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeC
Q 035878          404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNL  483 (496)
Q Consensus       404 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  483 (496)
                      +|++|++++|++++ +|   ..+++|+.| ++++|+++ .+|.   .+++|++|+|++|+++ .+|..|..+++|+.|++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L-~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKEL-MVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEE-ECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEE-ECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            89999999999985 66   456889999 99999999 5676   6789999999999999 78999999999999999


Q ss_pred             cCCCCcccCCC
Q 035878          484 SYNNLEGPLPD  494 (496)
Q Consensus       484 s~N~l~g~ip~  494 (496)
                      ++|+++|.+|.
T Consensus       292 ~~N~l~~~~~~  302 (622)
T 3g06_A          292 EGNPLSERTLQ  302 (622)
T ss_dssp             CSCCCCHHHHH
T ss_pred             cCCCCCCcCHH
Confidence            99999987763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=3.7e-30  Score=251.90  Aligned_cols=267  Identities=21%  Similarity=0.182  Sum_probs=200.3

Q ss_pred             CCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCC
Q 035878          166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFN  245 (496)
Q Consensus       166 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n  245 (496)
                      ++..+++.+.+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++++++ +..+++|++|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence            4455666666654444445566677778887777776666777777777777777777766443 444555555555555


Q ss_pred             cccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCc
Q 035878          246 HFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPA  325 (496)
Q Consensus       246 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  325 (496)
                      ++++                        ..     ..++|++|++++|.+++..+.   .+++|++|++++|++++..+.
T Consensus        91 ~l~~------------------------l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~  138 (317)
T 3o53_A           91 YVQE------------------------LL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL  138 (317)
T ss_dssp             EEEE------------------------EE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred             cccc------------------------cc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence            4442                        11     125666666666666654433   246788888888888877777


Q ss_pred             ccCCCCCCCEEEccCCcCccccchhh-cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCC
Q 035878          326 EIGSLSQLVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRD  404 (496)
Q Consensus       326 ~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~  404 (496)
                      .++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++ +|..+..+++
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  215 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG  215 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCc
Confidence            78888999999999999987766666 4789999999999999865 32 3358999999999999995 4555899999


Q ss_pred             CCEEeccCccCCccCChhccCCccccccccccCCcCC-ccchhhhcCCCCCCEEEcccC-cCCcccch
Q 035878          405 LRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT-GEIPAQLEKLTSLQSMNLSHN-NLSGEIPA  470 (496)
Q Consensus       405 L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~  470 (496)
                      |++|++++|+++ .+|..+..+++|+.+ ++++|.++ +.+|..+..+++|++|++++| .++|..|.
T Consensus       216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L-~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          216 VTWISLRNNKLV-LIEKALRFSQNLEHF-DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CSEEECTTSCCC-EECTTCCCCTTCCEE-ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ccEEECcCCccc-chhhHhhcCCCCCEE-EccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            999999999998 678889999999999 99999999 788999999999999999954 45655544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=2.9e-31  Score=282.07  Aligned_cols=209  Identities=16%  Similarity=0.164  Sum_probs=143.8

Q ss_pred             ccCCCCCccEEEcccCcccccCC-cCcCCCCCCCEEEccCCccccc-CCcccCCCCCCCEEEccC---------CcCccc
Q 035878          278 DFGIYPNLTYIDLSYNRLQGEVS-PKWGKCQKLTLLGLAGNSIGGK-IPAEIGSLSQLVVLDLSS---------NQLSGE  346 (496)
Q Consensus       278 ~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~~  346 (496)
                      .+..+++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|++++         +.+++.
T Consensus       284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            33456788888888888664322 22457788888888877 4322 222233477888888833         455543


Q ss_pred             cchhh-cCCCCCCEEeccCCcCccccchhhc-CCCCCCEEEcc--C----CcCCCC-----ChhhhhCCCCCCEEeccCc
Q 035878          347 IPAQI-GNLTELSTLSLNGNDISGPIPEEIG-ALLNLDSLDLS--M----NRLSGP-----IPKQIGELRDLRSLSLSQN  413 (496)
Q Consensus       347 ~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~-----~~~~l~~~~~L~~L~Ls~n  413 (496)
                      ....+ ..+++|++|.+..|.+++..+..+. .+++|++|+++  +    +.+++.     ++..+..+++|++|++++ 
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-  441 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-  441 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence            33333 3478888888888888766555554 47888999888  4    455521     223366788899999977 


Q ss_pred             cCCccCChhccC-CccccccccccCCcCCccchhhh-cCCCCCCEEEcccCcCCcccch-hhhcCCCCCEEeCcCCCCc
Q 035878          414 NLNGTIPFQIGN-LVGLQDLLDLSYNSLTGEIPAQL-EKLTSLQSMNLSHNNLSGEIPA-SLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       414 ~l~~~~p~~~~~-l~~L~~LL~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~  489 (496)
                      .+++..+..++. +++|++| ++++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|++|++++|+++
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L-~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEML-SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEE-EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cccHHHHHHHHHhchhccEe-eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            666665556655 7888888 999998877655555 6788899999999998655444 3455788999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=8.2e-29  Score=256.27  Aligned_cols=234  Identities=21%  Similarity=0.174  Sum_probs=157.3

Q ss_pred             CCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEcc
Q 035878          236 KLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLA  315 (496)
Q Consensus       236 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~  315 (496)
                      +|+.|++++|.+++..|..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            56666666666666555666666666666666666665444  6666777777777776664322     2667777777


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhc-CCCCCCEEEccCCcCCCC
Q 035878          316 GNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG-ALLNLDSLDLSMNRLSGP  394 (496)
Q Consensus       316 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~  394 (496)
                      +|.+++..+.   .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            7777655443   346677777777777766666677777777777777777766666665 567777777777777754


Q ss_pred             ChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC-cccchhhh
Q 035878          395 IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS-GEIPASLS  473 (496)
Q Consensus       395 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~  473 (496)
                       |. ...+++|++|+|++|.+++. |..+..+++|+.| ++++|++++ +|..+..+++|++|++++|+++ +.+|..+.
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L-~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWI-SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEE-ECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEE-EecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence             22 33467777777777777753 3346777777777 777777774 6666777777777777777776 56667777


Q ss_pred             cCCCCCEEeCc
Q 035878          474 SMLSLVAVNLS  484 (496)
Q Consensus       474 ~l~~L~~L~ls  484 (496)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            77777766665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1.3e-28  Score=254.81  Aligned_cols=235  Identities=23%  Similarity=0.229  Sum_probs=121.7

Q ss_pred             CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878          164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS  243 (496)
Q Consensus       164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~  243 (496)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.++++|..    ++|++|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence            355555555555555555555555555555555555554333  55556666666666655554422    455555555


Q ss_pred             CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcC-CCCCCCEEEccCCccccc
Q 035878          244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWG-KCQKLTLLGLAGNSIGGK  322 (496)
Q Consensus       244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~  322 (496)
                      +|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            5555443322   234555555555555555555555555555555555555554444443 455555555555555543


Q ss_pred             CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCC-CCChhhhhC
Q 035878          323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS-GPIPKQIGE  401 (496)
Q Consensus       323 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~  401 (496)
                      .  ....+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.+. +.+|..+..
T Consensus       185 ~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 K--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             E--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             c--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            1  122355555555555555532 2234555555555555555553 4444555555555555555554 334444444


Q ss_pred             CCCCCEEecc
Q 035878          402 LRDLRSLSLS  411 (496)
Q Consensus       402 ~~~L~~L~Ls  411 (496)
                      ++.|+.++++
T Consensus       261 l~~L~~l~~~  270 (487)
T 3oja_A          261 NQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCCCcEEecc
Confidence            4444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=7.1e-27  Score=223.17  Aligned_cols=217  Identities=25%  Similarity=0.318  Sum_probs=129.7

Q ss_pred             CCCccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 035878           63 PSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGL  142 (496)
Q Consensus        63 ~~~C~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L  142 (496)
                      .++|.|.|+.|+..+.++.+++++++++ .+|. .+.  +.++     +|++++|.+++ +|...        |.++++|
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~-~~~--~~l~-----~L~l~~n~l~~-~~~~~--------~~~l~~L   63 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPS-NIP--ADTK-----KLDLQSNKLSS-LPSKA--------FHRLTKL   63 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCS-CCC--TTCS-----EEECCSSCCSC-CCTTS--------SSSCTTC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCC-CCC--CCCC-----EEECcCCCCCe-eCHHH--------hcCCCCC
Confidence            4789999999976667778888888887 3443 222  3344     56666776663 33221        5666666


Q ss_pred             cEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCC
Q 035878          143 KNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFIN  222 (496)
Q Consensus       143 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (496)
                      ++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            67777666666554555566666666666666666555555566666666666666666555555666666666666666


Q ss_pred             CCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcC
Q 035878          223 KLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPK  302 (496)
Q Consensus       223 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  302 (496)
                      .++++|..                       .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..
T Consensus       144 ~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          144 ELQSLPKG-----------------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             CCCCCCTT-----------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCCccCHh-----------------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence            66554433                       3444444555555555554444444445555555555555555444444


Q ss_pred             cCCCCCCCEEEccCCccc
Q 035878          303 WGKCQKLTLLGLAGNSIG  320 (496)
Q Consensus       303 ~~~~~~L~~L~L~~n~l~  320 (496)
                      +..+++|+.|++++|.+.
T Consensus       201 ~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSSCBC
T ss_pred             hccccCCCEEEecCCCee
Confidence            555555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.2e-26  Score=222.34  Aligned_cols=224  Identities=28%  Similarity=0.290  Sum_probs=151.5

Q ss_pred             EecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcc
Q 035878          240 FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI  319 (496)
Q Consensus       240 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  319 (496)
                      .+..+..++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            344444444 3454443  4677778877777766666777777777777777777766666677777777777777777


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc-cchhhcCCCCCCEEEccCCcCCCCChhh
Q 035878          320 GGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP-IPEEIGALLNLDSLDLSMNRLSGPIPKQ  398 (496)
Q Consensus       320 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  398 (496)
                      ++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            776667777777777777777777765555677777777777777777653 4677777777777777777777665556


Q ss_pred             hhCCCCCC----EEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878          399 IGELRDLR----SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI  468 (496)
Q Consensus       399 l~~~~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  468 (496)
                      +..+++|+    +|++++|.+++..+.. ....+|++| ++++|++++..+..+.++++|++|++++|++++..
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKEL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEE-ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             hhhhhhccccceeeecCCCcccccCccc-cCCCcccEE-ECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            66555555    6777777776443333 333466666 77777777555555666777777777777776544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.7e-30  Score=276.07  Aligned_cols=347  Identities=14%  Similarity=0.091  Sum_probs=228.0

Q ss_pred             CCCCCcEEEccCCcCcccCCcCC----CCCCCCCEEEccCCC--Cccc-CCccccCCCCCceEecccCcCCcccCccCCC
Q 035878          138 GLLGLKNFLLQDNMLSGRIPEEI----GNCKLLTLLALDGNF--LSGP-IPSSLGNLSDLAVLAVASNQLSGEIPANIGT  210 (496)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  210 (496)
                      ++++|++|++++|.+++..+..+    ..+++|++|++++|.  ++.. ++..+..+++|++|++++|...+.++..+..
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~  233 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR  233 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence            45666666666666554332222    245566666666654  2211 1111234566666666665222225555555


Q ss_pred             CCCCCEEECCCCC-------CccccccccCCCCCcEE-ecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCC
Q 035878          211 LSKLTDLHLFINK-------LSGLPPQVCKGGKLINF-TASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGI  281 (496)
Q Consensus       211 l~~L~~L~L~~n~-------l~~lp~~l~~l~~L~~L-~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~  281 (496)
                      +++|++|+++.+.       +.+++..+..+++|+.+ .+.... .+.++..+..+++|++|++++|.+++... ..+..
T Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~  312 (594)
T 2p1m_B          234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ  312 (594)
T ss_dssp             CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred             CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence            6666666644332       23344455666666666 333222 12345555578999999999999775432 33568


Q ss_pred             CCCccEEEcccCccccc-CCcCcCCCCCCCEEEccC---------CcccccCCcccC-CCCCCCEEEccCCcCccccchh
Q 035878          282 YPNLTYIDLSYNRLQGE-VSPKWGKCQKLTLLGLAG---------NSIGGKIPAEIG-SLSQLVVLDLSSNQLSGEIPAQ  350 (496)
Q Consensus       282 l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~  350 (496)
                      +++|++|++++| +.+. ++.....+++|++|++.+         +.+++.....+. .+++|++|.+..|.+++..+..
T Consensus       313 ~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~  391 (594)
T 2p1m_B          313 CPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT  391 (594)
T ss_dssp             CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred             CCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence            899999999988 4422 222234588999999943         455543333333 4889999999999998766666


Q ss_pred             hc-CCCCCCEEecc--C----CcCccc-----cchhhcCCCCCCEEEccCCcCCCCChhhhhC-CCCCCEEeccCccCCc
Q 035878          351 IG-NLTELSTLSLN--G----NDISGP-----IPEEIGALLNLDSLDLSMNRLSGPIPKQIGE-LRDLRSLSLSQNNLNG  417 (496)
Q Consensus       351 l~-~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-~~~L~~L~Ls~n~l~~  417 (496)
                      +. .+++|++|+++  +    +.+++.     ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++
T Consensus       392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~  470 (594)
T 2p1m_B          392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD  470 (594)
T ss_dssp             HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred             HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence            54 58999999999  4    556521     223367789999999987 677665556655 8999999999999987


Q ss_pred             cCChhc-cCCccccccccccCCcCCccchh-hhcCCCCCCEEEcccCcCCcccchhh-hcCCCCCEEeCcCCCC
Q 035878          418 TIPFQI-GNLVGLQDLLDLSYNSLTGEIPA-QLEKLTSLQSMNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNL  488 (496)
Q Consensus       418 ~~p~~~-~~l~~L~~LL~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l  488 (496)
                      ..+..+ ..+++|++| ++++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus       471 ~~~~~l~~~~~~L~~L-~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          471 LGMHHVLSGCDSLRKL-EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHHHHHHHHCTTCCEE-EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HHHHHHHhcCCCcCEE-ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            666555 668999999 9999999765444 44568999999999999975545555 5678887776666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=7.8e-26  Score=216.61  Aligned_cols=222  Identities=22%  Similarity=0.216  Sum_probs=120.0

Q ss_pred             EECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccc
Q 035878          217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ  296 (496)
Q Consensus       217 L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  296 (496)
                      .+..+..++.+|..+.  +++++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            3444444555554432  34555666655555544445555555666666665555544445555555666666666555


Q ss_pred             ccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc-cchhhcCCCCCCEEeccCCcCccccchhh
Q 035878          297 GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGE-IPAQIGNLTELSTLSLNGNDISGPIPEEI  375 (496)
Q Consensus       297 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  375 (496)
                      +..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            55555555555666666665555554444555555666666666555542 35555555566666666665555444444


Q ss_pred             cCCCCCC----EEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878          376 GALLNLD----SLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG  442 (496)
Q Consensus       376 ~~l~~L~----~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~  442 (496)
                      ..+++|+    +|++++|++++..+..+ ...+|++|++++|++++..+..+..+++|+++ ++++|.+++
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~N~~~c  238 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKI-WLHTNPWDC  238 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE-ECCSSCBCC
T ss_pred             hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEE-EccCCcccc
Confidence            4444444    55556665554333322 22355556666665554444444555555555 566655554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=4.2e-25  Score=210.84  Aligned_cols=204  Identities=24%  Similarity=0.275  Sum_probs=159.9

Q ss_pred             CCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878          260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS  339 (496)
Q Consensus       260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  339 (496)
                      ..+.++++++.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            46788888888874 454443  678888888888887766678888888888888888886666667788888888888


Q ss_pred             CCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccC
Q 035878          340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI  419 (496)
Q Consensus       340 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~  419 (496)
                      +|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            88888666666778888888888888888777777788888888888888888666666778888888888888888666


Q ss_pred             ChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878          420 PFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       420 p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      +..+..+++|++| ++++|++++..+..+..+++|++|++++|++...
T Consensus       174 ~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          174 EGAFDKLTELKTL-KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             hhHhccCCCcCEE-ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            6667778888888 8888888866666677788888888888887543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=9.6e-26  Score=215.51  Aligned_cols=226  Identities=24%  Similarity=0.252  Sum_probs=178.2

Q ss_pred             cEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCC
Q 035878          238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGN  317 (496)
Q Consensus       238 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  317 (496)
                      ..+.+..+.+...  .....+++|+.|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            3444445544433  2345678888999998888743  3477788899999998888763  46788888888888888


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChh
Q 035878          318 SIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK  397 (496)
Q Consensus       318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  397 (496)
                      .+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            88877777788888888888888888877777788888888888888888877777778888888888888888877777


Q ss_pred             hhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCC
Q 035878          398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS  477 (496)
Q Consensus       398 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  477 (496)
                      .+..+++|++|++++|++++..|..+..+++|+++ ++++|.+.+.       +++|++|+++.|+++|.+|..++.+..
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI-WLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE-ECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE-EccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            77888888888888888887777778888888888 8888888754       446788888888888888888776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=4.8e-25  Score=210.68  Aligned_cols=208  Identities=23%  Similarity=0.201  Sum_probs=109.7

Q ss_pred             CCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEE
Q 035878          210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYID  289 (496)
Q Consensus       210 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  289 (496)
                      .+++|++|++++|.++.++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3455555555555544433 233344444444444444431  2344555555555555555554444455555555555


Q ss_pred             cccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcc
Q 035878          290 LSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG  369 (496)
Q Consensus       290 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  369 (496)
                      +++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            55555555444445555555555555555555444445555555555555555554444445555555555555555555


Q ss_pred             ccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCc
Q 035878          370 PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLV  427 (496)
Q Consensus       370 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  427 (496)
                      ..+..+..+++|++|++++|.+.+.       ++.|++++++.|.++|.+|.+++.+.
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            5444455555555555555555432       33455555555555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.93  E-value=4.8e-27  Score=236.24  Aligned_cols=244  Identities=16%  Similarity=0.216  Sum_probs=112.7

Q ss_pred             ccccccCCCCCcEEecCCCcccCCCC----cccCCCCCCcEEEccCCCC---CCcccccc-------CCCCCccEEEccc
Q 035878          227 LPPQVCKGGKLINFTASFNHFSGPIP----TSLKSCSSLYRVRLESNEL---TGDLEQDF-------GIYPNLTYIDLSY  292 (496)
Q Consensus       227 lp~~l~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~ls~  292 (496)
                      ++..+..+++|++|++++|.+++..+    ..+..+++|++|+|++|.+   ++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            55555556666666666666654322    2344556666666665432   23333322       3445555555555


Q ss_pred             Ccccc----cCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCC---------CCCCE
Q 035878          293 NRLQG----EVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNL---------TELST  359 (496)
Q Consensus       293 n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---------~~L~~  359 (496)
                      |.+++    .++..+..+++|++|++++|.+++..+..+..                    .+..+         ++|++
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~  163 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRS  163 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcE
Confidence            55544    23334444445555555555443222221111                    11112         44555


Q ss_pred             EeccCCcCc-cccc---hhhcCCCCCCEEEccCCcCCC-----CChhhhhCCCCCCEEeccCccCC----ccCChhccCC
Q 035878          360 LSLNGNDIS-GPIP---EEIGALLNLDSLDLSMNRLSG-----PIPKQIGELRDLRSLSLSQNNLN----GTIPFQIGNL  426 (496)
Q Consensus       360 L~Ls~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~l~~~~~L~~L~Ls~n~l~----~~~p~~~~~l  426 (496)
                      |++++|+++ +.++   ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    +.+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            555555444 2222   233344455555555554441     12223444455555555555543    3344444455


Q ss_pred             ccccccccccCCcCCcc----chhhhcC--CCCCCEEEcccCcCCc----ccchhh-hcCCCCCEEeCcCCCCccc
Q 035878          427 VGLQDLLDLSYNSLTGE----IPAQLEK--LTSLQSMNLSHNNLSG----EIPASL-SSMLSLVAVNLSYNNLEGP  491 (496)
Q Consensus       427 ~~L~~LL~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~  491 (496)
                      ++|++| +|++|++++.    ++..+..  +++|++|+|++|++++    .+|..+ .++++|++|++++|++++.
T Consensus       244 ~~L~~L-~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          244 PNLREL-GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             TTCCEE-ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CCcCEE-ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            555555 5555555443    3344422  4555555555555554    244444 3345555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.4e-24  Score=209.29  Aligned_cols=204  Identities=27%  Similarity=0.226  Sum_probs=156.1

Q ss_pred             cCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 035878          255 LKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLV  334 (496)
Q Consensus       255 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  334 (496)
                      +.+++++++++++++.++. +|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++..+  .+.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            5667788888888888874 444332  678888888888887777778888888888888888875433  26778888


Q ss_pred             EEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCcc
Q 035878          335 VLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNN  414 (496)
Q Consensus       335 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~  414 (496)
                      +|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            8888888887 567777778888888888888886666777888888888888888887666667778888888888888


Q ss_pred             CCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          415 LNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       415 l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      +++..+..+..+++|++| +|++|+++ .+|..+..+.+|++|+|++|++..
T Consensus       160 l~~l~~~~~~~l~~L~~L-~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTL-LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEE-ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccCHHHhcCcCCCCEE-ECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            875555556777888888 88888887 677777777788888888887753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=3.8e-24  Score=206.25  Aligned_cols=202  Identities=23%  Similarity=0.189  Sum_probs=118.2

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      +++++++++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+.  +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            456677777777777776 4444443  5677777777777766667777777777777777777643322  5677777


Q ss_pred             EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc
Q 035878          216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL  295 (496)
Q Consensus       216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  295 (496)
                      +|++++|+++.+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            77777777776666555566666666666666554445555555555555555555544444444455555555555555


Q ss_pred             cccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 035878          296 QGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL  343 (496)
Q Consensus       296 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  343 (496)
                      ++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            4433333444444444444444444 3333333444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.92  E-value=1.5e-26  Score=230.54  Aligned_cols=255  Identities=19%  Similarity=0.236  Sum_probs=179.9

Q ss_pred             EEECCCCCCcc-ccccccCCCCCcEEecCCCcccCCCC----cccCCCC-CCcEEEccCCCCCCccccccCCC-----CC
Q 035878          216 DLHLFINKLSG-LPPQVCKGGKLINFTASFNHFSGPIP----TSLKSCS-SLYRVRLESNELTGDLEQDFGIY-----PN  284 (496)
Q Consensus       216 ~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~  284 (496)
                      +++++.|.+++ +|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788888888 56555555668888888888887665    6677777 88888888888887766666553     88


Q ss_pred             ccEEEcccCcccccCCcCc----CCC-CCCCEEEccCCcccccCCccc----CC-CCCCCEEEccCCcCccc----cchh
Q 035878          285 LTYIDLSYNRLQGEVSPKW----GKC-QKLTLLGLAGNSIGGKIPAEI----GS-LSQLVVLDLSSNQLSGE----IPAQ  350 (496)
Q Consensus       285 L~~L~ls~n~l~~~~~~~~----~~~-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~l~~~----~~~~  350 (496)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++.    ++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            8888888888876655533    333 788888888888876655443    33 35888888888888753    3344


Q ss_pred             hcCCC-CCCEEeccCCcCccccchhhc----CC-CCCCEEEccCCcCCCC----ChhhhhC-CCCCCEEeccCccCCccC
Q 035878          351 IGNLT-ELSTLSLNGNDISGPIPEEIG----AL-LNLDSLDLSMNRLSGP----IPKQIGE-LRDLRSLSLSQNNLNGTI  419 (496)
Q Consensus       351 l~~l~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~l~~-~~~L~~L~Ls~n~l~~~~  419 (496)
                      +..++ +|++|++++|++++..+..+.    .+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 888888888888766655443    34 5888888888888753    4445554 358888888888887654


Q ss_pred             C----hhccCCccccccccccCCcCCcc-------chhhhcCCCCCCEEEcccCcCCcccchh
Q 035878          420 P----FQIGNLVGLQDLLDLSYNSLTGE-------IPAQLEKLTSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       420 p----~~~~~l~~L~~LL~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  471 (496)
                      +    ..+..+++|++| ++++|.+.+.       ++..+.++++|++||+++|++.+..+..
T Consensus       242 ~~~l~~~~~~l~~L~~L-~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTV-YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             HHHHHHTTTTTTTCSEE-EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HHHHHHHHhcCCCccEE-EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            4    234566778888 8888875433       2345667777888888888887664443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.92  E-value=3.6e-26  Score=225.19  Aligned_cols=231  Identities=19%  Similarity=0.197  Sum_probs=134.4

Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc-CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 035878          259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE-VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLD  337 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  337 (496)
                      ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            3444555555544444333 23455555555555555543 444555566666666666666555555566666666666


Q ss_pred             ccCC-cCccc-cchhhcCCCCCCEEeccCC-cCccc-cchhhcCCC-CCCEEEccCC--cCC-CCChhhhhCCCCCCEEe
Q 035878          338 LSSN-QLSGE-IPAQIGNLTELSTLSLNGN-DISGP-IPEEIGALL-NLDSLDLSMN--RLS-GPIPKQIGELRDLRSLS  409 (496)
Q Consensus       338 Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~~~~L~~L~  409 (496)
                      +++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            6666 45542 4555666666777777766 66543 455566666 6777777776  344 34555566667777777


Q ss_pred             ccCcc-CCccCChhccCCccccccccccCCc-CCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878          410 LSQNN-LNGTIPFQIGNLVGLQDLLDLSYNS-LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN  487 (496)
Q Consensus       410 Ls~n~-l~~~~p~~~~~l~~L~~LL~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  487 (496)
                      +++|. +++..+..+..+++|++| ++++|. ++......+.++++|++|++++| ++...-..+.  ..+..|++++|+
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~  304 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHL-SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH  304 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEE-ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEe-eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence            77776 555666666667777777 777774 22222234666777777777777 4322212221  235555677777


Q ss_pred             CcccCCC
Q 035878          488 LEGPLPD  494 (496)
Q Consensus       488 l~g~ip~  494 (496)
                      ++|.+|.
T Consensus       305 l~~~~~~  311 (336)
T 2ast_B          305 FTTIARP  311 (336)
T ss_dssp             SCCTTCS
T ss_pred             CccccCC
Confidence            7777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.92  E-value=4.1e-27  Score=236.72  Aligned_cols=255  Identities=23%  Similarity=0.239  Sum_probs=160.9

Q ss_pred             ccCccCCCCCCCCEEECCCCCCcc-----ccccccCCCCCcEEecCCC---cccCCCCccc-------CCCCCCcEEEcc
Q 035878          203 EIPANIGTLSKLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFN---HFSGPIPTSL-------KSCSSLYRVRLE  267 (496)
Q Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~L~  267 (496)
                      .++..+..+++|++|++++|.++.     ++..+..+++|++|++++|   ++++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            456677789999999999999987     4455778999999999996   5556666555       789999999999


Q ss_pred             CCCCCC----ccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 035878          268 SNELTG----DLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL  343 (496)
Q Consensus       268 ~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  343 (496)
                      +|.+++    .++..+..+++|++|++++|.+++..+..+...  +..  +..+++.+       ..++|++|++++|++
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~~-------~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKAK-------NAPPLRSIICGRNRL  171 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHHH-------TCCCCCEEECCSSCC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhcc-------cCCCCcEEECCCCCC
Confidence            999998    467788889999999999999975444333221  000  00001110       003444444444444


Q ss_pred             c-cccc---hhhcCCCCCCEEeccCCcCcc-----ccchhhcCCCCCCEEEccCCcCC----CCChhhhhCCCCCCEEec
Q 035878          344 S-GEIP---AQIGNLTELSTLSLNGNDISG-----PIPEEIGALLNLDSLDLSMNRLS----GPIPKQIGELRDLRSLSL  410 (496)
Q Consensus       344 ~-~~~~---~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~~~~L~~L~L  410 (496)
                      + +.++   ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    +.+|..+..+++|++|+|
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            3 2222   234445555555555555541     12224455555666666666553    345555556666666666


Q ss_pred             cCccCCcc----CChhc--cCCccccccccccCCcCCc----cchhhh-cCCCCCCEEEcccCcCCcccc
Q 035878          411 SQNNLNGT----IPFQI--GNLVGLQDLLDLSYNSLTG----EIPAQL-EKLTSLQSMNLSHNNLSGEIP  469 (496)
Q Consensus       411 s~n~l~~~----~p~~~--~~l~~L~~LL~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p  469 (496)
                      ++|.+++.    +|..+  +.+++|++| +|++|++++    .+|..+ .++++|++|++++|++++..+
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L-~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTL-RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEE-ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEE-ECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            66666544    34444  236666666 777777665    366666 556777777777777776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.92  E-value=2e-26  Score=229.56  Aligned_cols=253  Identities=18%  Similarity=0.167  Sum_probs=140.2

Q ss_pred             EEEccCCCCcccCCccccCCCCCceEecccCcCCcccC----ccCCCCC-CCCEEECCCCCCccc-cccccCC-----CC
Q 035878          168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIP----ANIGTLS-KLTDLHLFINKLSGL-PPQVCKG-----GK  236 (496)
Q Consensus       168 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~l-p~~l~~l-----~~  236 (496)
                      ++++++|.+++.+|..+...++|++|++++|.+++..+    +.+..++ +|++|++++|++++. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788888888888777777778888888888876655    6666777 788888888888773 3333332     67


Q ss_pred             CcEEecCCCcccCCCCccc----CCC-CCCcEEEccCCCCCCcccccc----CC-CCCccEEEcccCcccccCC----cC
Q 035878          237 LINFTASFNHFSGPIPTSL----KSC-SSLYRVRLESNELTGDLEQDF----GI-YPNLTYIDLSYNRLQGEVS----PK  302 (496)
Q Consensus       237 L~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~ls~n~l~~~~~----~~  302 (496)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++...    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            7777777777765554432    333 566666766666655444332    22 2466666666666653222    22


Q ss_pred             cCCCC-CCCEEEccCCcccccCCccc----CCC-CCCCEEEccCCcCccc----cchhhcC-CCCCCEEeccCCcCcccc
Q 035878          303 WGKCQ-KLTLLGLAGNSIGGKIPAEI----GSL-SQLVVLDLSSNQLSGE----IPAQIGN-LTELSTLSLNGNDISGPI  371 (496)
Q Consensus       303 ~~~~~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~~  371 (496)
                      +...+ +|++|++++|++++..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            22333 55666666665554443322    222 3555555555555531    2333333 235555555555555432


Q ss_pred             c----hhhcCCCCCCEEEccCCcCCCCCh-------hhhhCCCCCCEEeccCccCCccCC
Q 035878          372 P----EEIGALLNLDSLDLSMNRLSGPIP-------KQIGELRDLRSLSLSQNNLNGTIP  420 (496)
Q Consensus       372 ~----~~~~~l~~L~~L~Ls~n~l~~~~~-------~~l~~~~~L~~L~Ls~n~l~~~~p  420 (496)
                      +    ..+..+++|++|++++|.+.+..+       ..+..+++|++|++++|++.+..+
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            2    122334555555555555332222       123344445555555555544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=3e-25  Score=216.27  Aligned_cols=224  Identities=20%  Similarity=0.210  Sum_probs=161.1

Q ss_pred             CCcEEEccCCCCCCcccc---ccCCCCCccEEEcccCcccccCCcCc--CCCCCCCEEEccCCcccccCC----cccCCC
Q 035878          260 SLYRVRLESNELTGDLEQ---DFGIYPNLTYIDLSYNRLQGEVSPKW--GKCQKLTLLGLAGNSIGGKIP----AEIGSL  330 (496)
Q Consensus       260 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~----~~l~~l  330 (496)
                      .++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            355555555554321100   11123557777777777777777766  677777888888877776544    344567


Q ss_pred             CCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc--c--chhhcCCCCCCEEEccCCcCCCCChh----hhhCC
Q 035878          331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP--I--PEEIGALLNLDSLDLSMNRLSGPIPK----QIGEL  402 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~----~l~~~  402 (496)
                      ++|++|++++|.+++..+..++.+++|++|++++|++.+.  +  +..+..+++|++|++++|+++ .++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            7888888888888777777788888888888888887642  2  222357788888888888887 3333    25677


Q ss_pred             CCCCEEeccCccCCccCChhccCC---ccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCC
Q 035878          403 RDLRSLSLSQNNLNGTIPFQIGNL---VGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLV  479 (496)
Q Consensus       403 ~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  479 (496)
                      ++|++|++++|++++.+|..+..+   ++|++| ++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L-~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL-NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE-ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEE-ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            888888998888888778777776   588888 99999988 6777664  7899999999999864 33 67788899


Q ss_pred             EEeCcCCCCcc
Q 035878          480 AVNLSYNNLEG  490 (496)
Q Consensus       480 ~L~ls~N~l~g  490 (496)
                      .|++++|+++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.92  E-value=8.2e-26  Score=222.68  Aligned_cols=252  Identities=18%  Similarity=0.241  Sum_probs=123.3

Q ss_pred             CCEEEccCCCCcccCCccccCC--CCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878          166 LTLLALDGNFLSGPIPSSLGNL--SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS  243 (496)
Q Consensus       166 L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~  243 (496)
                      ++.++++++.+.   +..+..+  +++++|++++|.+++..+. +..+++|++|++++|.+++                 
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-----------------  107 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV-----------------  107 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH-----------------
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH-----------------
Confidence            566666666554   3334444  5566666666666544433 3345555555555555443                 


Q ss_pred             CCcccCC-CCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccC-ccccc-CCcCcCCCCCCCEEEccCC-cc
Q 035878          244 FNHFSGP-IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYN-RLQGE-VSPKWGKCQKLTLLGLAGN-SI  319 (496)
Q Consensus       244 ~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l  319 (496)
                            . ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+
T Consensus       108 ------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          108 ------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             ------HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             ------HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence                  2 2333334444444444444444444444444444555555444 33321 2333444455555555555 44


Q ss_pred             ccc-CCcccCCCC-CCCEEEccCC--cCc-cccchhhcCCCCCCEEeccCCc-CccccchhhcCCCCCCEEEccCCc-CC
Q 035878          320 GGK-IPAEIGSLS-QLVVLDLSSN--QLS-GEIPAQIGNLTELSTLSLNGND-ISGPIPEEIGALLNLDSLDLSMNR-LS  392 (496)
Q Consensus       320 ~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~  392 (496)
                      ++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            432 333444555 5555555555  333 3344455556666666666665 444555555556666666666663 22


Q ss_pred             CCChhhhhCCCCCCEEeccCccCCccCChhccCC-ccccccccccCCcCCccchhhhc
Q 035878          393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNL-VGLQDLLDLSYNSLTGEIPAQLE  449 (496)
Q Consensus       393 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~LL~Ls~N~l~~~~p~~l~  449 (496)
                      ......+.++++|++|++++| ++..   .+..+ ..+..| ++++|++++..|..++
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L-~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHL-QINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTS-EESCCCSCCTTCSSCS
T ss_pred             HHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcce-EEecccCccccCCccc
Confidence            111123555566666666655 3221   11222 224444 5555555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.7e-23  Score=196.04  Aligned_cols=205  Identities=24%  Similarity=0.241  Sum_probs=164.1

Q ss_pred             CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878          283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL  362 (496)
Q Consensus       283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  362 (496)
                      ...++++++++.++ .+|..+.  +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45788999999887 4565554  68999999999999888888999999999999999999887888899999999999


Q ss_pred             cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878          363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG  442 (496)
Q Consensus       363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~  442 (496)
                      ++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++| +|++|++++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL-SLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE-ECCCCcCCc
Confidence            9999997777788889999999999999997777778889999999999999987767678889999999 999999997


Q ss_pred             cchhhhcCCCCCCEEEcccCcCCcc------cchhhhcCCCCCEEeCcCCCCcccC
Q 035878          443 EIPAQLEKLTSLQSMNLSHNNLSGE------IPASLSSMLSLVAVNLSYNNLEGPL  492 (496)
Q Consensus       443 ~~p~~l~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~ls~N~l~g~i  492 (496)
                      ..+..+.++++|++|++++|++++.      ++.++.. ...+..+.+++.+.+..
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~  224 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE-NSNKVKDGTGQNLHESP  224 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH-SGGGBCC-------CCG
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh-cccceeeccCcccccCC
Confidence            7777888999999999999999876      3333332 22234455566655443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.3e-23  Score=196.48  Aligned_cols=204  Identities=23%  Similarity=0.246  Sum_probs=167.8

Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878          259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL  338 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  338 (496)
                      ...++++++++.++. +|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            356789999999884 455444  68999999999999988888999999999999999999988888999999999999


Q ss_pred             cCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCcc
Q 035878          339 SSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT  418 (496)
Q Consensus       339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  418 (496)
                      ++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999977778889999999999999999977777788999999999999999977777899999999999999999987


Q ss_pred             CChhccCCccccccccccCCcCCcc------chhhhcCCCCCCEEEcccCcCCcc
Q 035878          419 IPFQIGNLVGLQDLLDLSYNSLTGE------IPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       419 ~p~~~~~l~~L~~LL~Ls~N~l~~~------~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      .+..+..+++|+++ ++++|.+++.      ++.++.. ...+..+..++.+.+.
T Consensus       171 ~~~~~~~l~~L~~L-~l~~N~~~c~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  223 (251)
T 3m19_A          171 PHGAFDRLGKLQTI-TLFGNQFDCSRCEILYLSQWIRE-NSNKVKDGTGQNLHES  223 (251)
T ss_dssp             CTTTTTTCTTCCEE-ECCSCCBCTTSTTHHHHHHHHHH-SGGGBCC-------CC
T ss_pred             CHHHHhCCCCCCEE-EeeCCceeCCccccHHHHHHHHh-cccceeeccCcccccC
Confidence            77789999999999 9999999876      3333332 1223345556666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=5.2e-24  Score=207.48  Aligned_cols=199  Identities=24%  Similarity=0.223  Sum_probs=129.4

Q ss_pred             CcEEEccCCCCCCcccccc--CCCCCccEEEcccCcccccCC----cCcCCCCCCCEEEccCCcccccCCcccCCCCCCC
Q 035878          261 LYRVRLESNELTGDLEQDF--GIYPNLTYIDLSYNRLQGEVS----PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLV  334 (496)
Q Consensus       261 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  334 (496)
                      |++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++++..+..++.+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4444444444444444333  444445555555554443322    1233456666777777776666666667777777


Q ss_pred             EEEccCCcCccc--cc--hhhcCCCCCCEEeccCCcCccccch----hhcCCCCCCEEEccCCcCCCCChhhhhCC---C
Q 035878          335 VLDLSSNQLSGE--IP--AQIGNLTELSTLSLNGNDISGPIPE----EIGALLNLDSLDLSMNRLSGPIPKQIGEL---R  403 (496)
Q Consensus       335 ~L~Ls~n~l~~~--~~--~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~---~  403 (496)
                      +|++++|++.+.  ++  ..+..+++|++|++++|+++. ++.    .+..+++|++|++++|++++..|..+..+   +
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            777777776542  21  223567778888888887762 222    24567788888888888887767666665   5


Q ss_pred             CCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          404 DLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       404 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      +|++|++++|+++ .+|..+.  ++|++| +|++|++++. |. +..+++|++|++++|+++.
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L-~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRVL-DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSCE-ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCEE-ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8888888888888 6776664  788888 8999988853 43 6778889999999998874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.4e-23  Score=196.38  Aligned_cols=198  Identities=14%  Similarity=0.164  Sum_probs=153.5

Q ss_pred             CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEccC-CcCccccchhhcCCCCCCEE
Q 035878          283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS-IGGKIPAEIGSLSQLVVLDLSS-NQLSGEIPAQIGNLTELSTL  360 (496)
Q Consensus       283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L  360 (496)
                      +++++|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            467777777777776666677777888888888886 7766666777888888888887 88876656677888888888


Q ss_pred             eccCCcCccccchhhcCCCCCC---EEEccCC-cCCCCChhhhhCCCCCC-EEeccCccCCccCChhccCCccccccccc
Q 035878          361 SLNGNDISGPIPEEIGALLNLD---SLDLSMN-RLSGPIPKQIGELRDLR-SLSLSQNNLNGTIPFQIGNLVGLQDLLDL  435 (496)
Q Consensus       361 ~Ls~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L  435 (496)
                      ++++|++++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ +|++++|+++ .+|......++|+++ ++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L-~L  186 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV-YL  186 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE-EC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE-Ec
Confidence            888888875 555 77777777   8888888 88866666788888999 9999999888 565554444889888 99


Q ss_pred             cCCc-CCccchhhhcCC-CCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCC
Q 035878          436 SYNS-LTGEIPAQLEKL-TSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNN  487 (496)
Q Consensus       436 s~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  487 (496)
                      ++|+ +++..+..|.++ ++|++|++++|++++ +|..  .+++|+.|+++++.
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            9995 886667778888 899999999999985 4443  57788899988763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=3e-23  Score=194.17  Aligned_cols=178  Identities=17%  Similarity=0.136  Sum_probs=89.3

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC-CcccCCccccCCCCCceEeccc-CcCCcccCccCCCCCCCCEEE
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF-LSGPIPSSLGNLSDLAVLAVAS-NQLSGEIPANIGTLSKLTDLH  218 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  218 (496)
                      +|++|++++|.+++..+..|+++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45566666666665555556666666666666664 5544444566666666666665 666654445556666666666


Q ss_pred             CCCCCCccccccccCCCCCc---EEecCCC-cccCCCCcccCCCCCCc-EEEccCCCCCCccccccCCCCCccEEEcccC
Q 035878          219 LFINKLSGLPPQVCKGGKLI---NFTASFN-HFSGPIPTSLKSCSSLY-RVRLESNELTGDLEQDFGIYPNLTYIDLSYN  293 (496)
Q Consensus       219 L~~n~l~~lp~~l~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n  293 (496)
                      +++|+++++|. +..+++|+   +|++++| .+++..+..+.++++|+ +|++++|+++...+..+.. ++|++|++++|
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence            66666655554 43444443   4444444 44433333344444555 5555555444221112222 34444444444


Q ss_pred             c-ccccCCcCcCCC-CCCCEEEccCCccc
Q 035878          294 R-LQGEVSPKWGKC-QKLTLLGLAGNSIG  320 (496)
Q Consensus       294 ~-l~~~~~~~~~~~-~~L~~L~L~~n~l~  320 (496)
                      . +++..+..|..+ ++|++|++++|+++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccc
Confidence            2 443333333333 44444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=7.6e-23  Score=198.96  Aligned_cols=207  Identities=22%  Similarity=0.341  Sum_probs=165.0

Q ss_pred             ecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc
Q 035878          241 TASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG  320 (496)
Q Consensus       241 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  320 (496)
                      .+..+.+++.+  ....+++|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++|+++
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence            33444444322  244678899999999988753 3 57788999999999999886544  888999999999999988


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhh
Q 035878          321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG  400 (496)
Q Consensus       321 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  400 (496)
                      +.  ..+..+++|++|++++|.+++. +. +..+++|++|++++|++++..+  +..+++|++|++++|++++. +. +.
T Consensus        99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~  170 (308)
T 1h6u_A           99 NV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LA  170 (308)
T ss_dssp             CC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred             Cc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hc
Confidence            54  3688899999999999998854 33 8889999999999999986543  78889999999999999854 33 88


Q ss_pred             CCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          401 ELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       401 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      .+++|++|++++|++++..+  +..+++|++| ++++|++++..+  +..+++|++|++++|++++
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEV-HLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEE-ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEE-EccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            88999999999999885443  7888899998 999999986543  7888999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=2.3e-22  Score=195.57  Aligned_cols=193  Identities=24%  Similarity=0.352  Sum_probs=101.3

Q ss_pred             cCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEE
Q 035878          185 GNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRV  264 (496)
Q Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  264 (496)
                      ..+++|++|++++|.++. ++ .+..+++|++|++++|.+++++. +..+++|++|++++|++++.  ..+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            345666666666666653 33 35556666666666666665554 55555555555555555432  234444455555


Q ss_pred             EccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 035878          265 RLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS  344 (496)
Q Consensus       265 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  344 (496)
                      ++++|.+++..                          .+..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus       113 ~l~~n~l~~~~--------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          113 DLTSTQITDVT--------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ECTTSCCCCCG--------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCch--------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            55555444321                          14444455555555555443222  445555555555555555


Q ss_pred             cccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878          345 GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       345 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      +..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++..+  +..+++|++|++++|+++
T Consensus       165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            3222  5555555555555555553322  4555556666666666553322  555566666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=9.2e-22  Score=205.56  Aligned_cols=187  Identities=25%  Similarity=0.368  Sum_probs=105.8

Q ss_pred             CCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878          260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS  339 (496)
Q Consensus       260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  339 (496)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            44455555554443 33322  144555555555554 333   234555555555555554 443 333  56666666


Q ss_pred             CCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccC
Q 035878          340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI  419 (496)
Q Consensus       340 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~  419 (496)
                      +|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++|++|+|++|+++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            666654 343   45566666666666654 443   34566666666666664 444 43  56666666666666 55


Q ss_pred             ChhccCCccc-------cccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcC
Q 035878          420 PFQIGNLVGL-------QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSM  475 (496)
Q Consensus       420 p~~~~~l~~L-------~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  475 (496)
                      |. +..  +|       +.| +|++|+|+ .+|..+..+++|++|+|++|++++.+|..+..+
T Consensus       196 p~-~~~--~L~~~~~~L~~L-~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFF-RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC-CC----------CCEEE-ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEE-ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            54 433  45       666 77777777 566666667777777777777777777766654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.3e-21  Score=177.36  Aligned_cols=175  Identities=25%  Similarity=0.273  Sum_probs=99.9

Q ss_pred             CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878          283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL  362 (496)
Q Consensus       283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  362 (496)
                      +++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            35555555555555444444555556666666666655444444555666666666666665444444556666666666


Q ss_pred             cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878          363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG  442 (496)
Q Consensus       363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~  442 (496)
                      ++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+       .++.++++ +++.|+++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L-~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL-SEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHH-HHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHH-HHHHHhCCc
Confidence            6666665444455566666666666666665544455666666666666665543       33455555 666666666


Q ss_pred             cchhhhcCCCCCCEEEcccCcCCcccc
Q 035878          443 EIPAQLEKLTSLQSMNLSHNNLSGEIP  469 (496)
Q Consensus       443 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p  469 (496)
                      .+|..++.++.    ++..|...|..+
T Consensus       180 ~ip~~~~~l~~----~~~~C~~~~~~~  202 (208)
T 2o6s_A          180 VVRNSAGSVAP----DSAKCSGSGKPV  202 (208)
T ss_dssp             TBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred             eeeccCccccC----CccccccCCCcc
Confidence            66666655443    344444444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=2.2e-21  Score=192.23  Aligned_cols=239  Identities=21%  Similarity=0.222  Sum_probs=161.2

Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccc-ccCCCCCcEEecCCCcccCCCC-cccCCCCCCcE-EEcc
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQ-VCKGGKLINFTASFNHFSGPIP-TSLKSCSSLYR-VRLE  267 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~L~  267 (496)
                      ++++.++++++ .+|..+  .+++++|++++|+++.+|+. +..+++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56788888887 677665  36788888888888888764 5678888888888888766555 35677777665 5556


Q ss_pred             CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccC-CcccccCCcccCCCC-CCCEEEccCCcCcc
Q 035878          268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAG-NSIGGKIPAEIGSLS-QLVVLDLSSNQLSG  345 (496)
Q Consensus       268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~  345 (496)
                      .|+++...|..|..+++|++|++++|.+.+..+..+....++..+++.+ +++....+..|..+. .+++|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            6777777677778888888888888888766665566666777777755 455554455555553 5777888888877 


Q ss_pred             ccchhhcCCCCCCEEeccC-CcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhcc
Q 035878          346 EIPAQIGNLTELSTLSLNG-NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIG  424 (496)
Q Consensus       346 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  424 (496)
                      .++.......+|+++++++ |.++...+..|..+++|++||+++|+++...+..   +.+|+.|.+.++.--..+| .+.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            4444444556777777764 4555333345677777888888888777433332   4455555555543333566 366


Q ss_pred             CCccccccccccCC
Q 035878          425 NLVGLQDLLDLSYN  438 (496)
Q Consensus       425 ~l~~L~~LL~Ls~N  438 (496)
                      .+++|+.+ +++++
T Consensus       244 ~l~~L~~l-~l~~~  256 (350)
T 4ay9_X          244 KLVALMEA-SLTYP  256 (350)
T ss_dssp             TCCSCCEE-ECSCH
T ss_pred             hCcChhhC-cCCCC
Confidence            67777777 77654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=3.4e-21  Score=176.19  Aligned_cols=175  Identities=25%  Similarity=0.215  Sum_probs=102.8

Q ss_pred             CCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 035878          260 SLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS  339 (496)
Q Consensus       260 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  339 (496)
                      +|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444444433444455555555555555554444445555566666666666655444455666666666666


Q ss_pred             CCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccC
Q 035878          340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTI  419 (496)
Q Consensus       340 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~  419 (496)
                      +|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+       .++.|++|+++.|+++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence            666665545556666677777777776665555556667777777777776654       3456777777777777777


Q ss_pred             ChhccCCccccccccccCCcCCccchh
Q 035878          420 PFQIGNLVGLQDLLDLSYNSLTGEIPA  446 (496)
Q Consensus       420 p~~~~~l~~L~~LL~Ls~N~l~~~~p~  446 (496)
                      |..++.++.     +...|...|..+.
T Consensus       182 p~~~~~l~~-----~~~~C~~~~~~~~  203 (208)
T 2o6s_A          182 RNSAGSVAP-----DSAKCSGSGKPVR  203 (208)
T ss_dssp             BCTTSSBCT-----TCSBBTTTCCBGG
T ss_pred             eccCccccC-----CccccccCCCcce
Confidence            777665543     4444544444333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=1.8e-21  Score=203.32  Aligned_cols=183  Identities=23%  Similarity=0.352  Sum_probs=158.4

Q ss_pred             CCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEec
Q 035878          283 PNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSL  362 (496)
Q Consensus       283 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  362 (496)
                      .+++.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            389999999999987 66655  378999999999999 566   567899999999999997 676 654  9999999


Q ss_pred             cCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878          363 NGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG  442 (496)
Q Consensus       363 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~  442 (496)
                      ++|++++ +|.   .+++|++|++++|++++ +|.   .+++|++|++++|++++ +|. +.  ++|+.| +|++|+|+ 
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L-~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL-DVSTNLLE-  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE-ECCSSCCS-
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE-ECcCCCCC-
Confidence            9999997 666   68999999999999996 665   57899999999999996 777 65  899999 99999999 


Q ss_pred             cchhhhcCCCCC-------CEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          443 EIPAQLEKLTSL-------QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       443 ~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      .+|. +..  +|       ++|+|++|+++ .+|..+..+++|++|+|++|+++|.+|.
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            6777 654  77       99999999999 6888888899999999999999998773

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=2e-21  Score=192.46  Aligned_cols=241  Identities=19%  Similarity=0.171  Sum_probs=187.2

Q ss_pred             CEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccc-cccCCCCCccE-EEccc
Q 035878          215 TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE-QDFGIYPNLTY-IDLSY  292 (496)
Q Consensus       215 ~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~ls~  292 (496)
                      ++++.++++++.+|..+  .+++++|++++|+++...+..|.++++|++|+|++|++.+.++ ..|..++++++ +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            67888999999999877  3689999999999986656678999999999999999877665 46788888776 56677


Q ss_pred             CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccC-CcCccccchhhcCCC-CCCEEeccCCcCccc
Q 035878          293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSS-NQLSGEIPAQIGNLT-ELSTLSLNGNDISGP  370 (496)
Q Consensus       293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~  370 (496)
                      |+++...|..|..+++|++|++++|++++..+..+....++..+++.+ +.+....+..|..+. .+++|++++|+++ .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence            899988888899999999999999999877776777777888999876 456644445566654 6889999999998 4


Q ss_pred             cchhhcCCCCCCEEEccC-CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhc
Q 035878          371 IPEEIGALLNLDSLDLSM-NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLE  449 (496)
Q Consensus       371 ~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~  449 (496)
                      ++.......+|+++++++ |.++...+..|..+++|++|++++|+++...+..+.+++.|+.+ ++  +.+. .+|. +.
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l-~~--~~l~-~lP~-l~  243 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR-ST--YNLK-KLPT-LE  243 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT-TC--TTCC-CCCC-TT
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc-cC--CCcC-cCCC-ch
Confidence            555555667899999985 56664444578899999999999999985444456556655544 33  3444 6663 78


Q ss_pred             CCCCCCEEEcccCc
Q 035878          450 KLTSLQSMNLSHNN  463 (496)
Q Consensus       450 ~l~~L~~L~Ls~N~  463 (496)
                      ++++|+.++++++.
T Consensus       244 ~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          244 KLVALMEASLTYPS  257 (350)
T ss_dssp             TCCSCCEEECSCHH
T ss_pred             hCcChhhCcCCCCc
Confidence            89999999997654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=9.8e-20  Score=169.09  Aligned_cols=135  Identities=24%  Similarity=0.238  Sum_probs=94.1

Q ss_pred             CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      ++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45667777777777666667777777777777777776555555677777777777777777655566677777777777


Q ss_pred             CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCc
Q 035878          220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD  274 (496)
Q Consensus       220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  274 (496)
                      ++|+++.+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            7777777776666667777777777777655555666677777777777766644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.83  E-value=3.5e-22  Score=215.89  Aligned_cols=262  Identities=21%  Similarity=0.192  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHhcCCC--CCCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCce
Q 035878           29 TETEALLKWKETLVN--QSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLR  106 (496)
Q Consensus        29 ~~~~~ll~~k~~~~~--~~~l~~W~~~~~~~~~~~~~~~C~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~~l~~l~~L~~  106 (496)
                      .++++|+++..+...  ...-..|....        +..+.|.++++. .++++.++|.++.+... +. .+.....|..
T Consensus       132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~-~~l~~l~Ls~  200 (727)
T 4b8c_D          132 CTKQALMEMADTLTDSKTAKKQQPTGDS--------TPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ-ALLQHKKLSQ  200 (727)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred             cchhhhhhhhhhcccccCcccCCCcCCC--------CccccCCCceec-CCccceEEeeCCCCCcc-hh-hHhhcCccCc
Confidence            678999999988742  33334454322        456789998885 47899999999888753 33 4555556666


Q ss_pred             eccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccC
Q 035878          107 FDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGN  186 (496)
Q Consensus       107 L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  186 (496)
                      +.+..++++.|.+. ..|..         +..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|++
T Consensus       201 ~~i~~~~~~~n~~~-~~~~~---------~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  268 (727)
T 4b8c_D          201 YSIDEDDDIENRMV-MPKDS---------KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN  268 (727)
T ss_dssp             -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred             ccccCcccccccee-cChhh---------hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence            66667777777765 22332         678889999999999988 67777778999999999999998 78888999


Q ss_pred             CCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCC-CcEEE
Q 035878          187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSS-LYRVR  265 (496)
Q Consensus       187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~  265 (496)
                      +++|++|+|++|.++ .+|..|+++++|++|+|++|.++.+|..+..+++|+.|++++|.+++.+|..+..+.. +..++
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            999999999999998 7788889999999999999999889988888999999999999998888877654322 22467


Q ss_pred             ccCCCCCCccccccCCCCCccEEEcccC--------cccccCCcCcCCCCCCCEEEccCCccc
Q 035878          266 LESNELTGDLEQDFGIYPNLTYIDLSYN--------RLQGEVSPKWGKCQKLTLLGLAGNSIG  320 (496)
Q Consensus       266 L~~n~l~~~~~~~~~~l~~L~~L~ls~n--------~l~~~~~~~~~~~~~L~~L~L~~n~l~  320 (496)
                      +.+|.+++.+|.      .|+.|+++.|        .+.+..+..+..+..++...++.|-+.
T Consensus       348 l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          348 LRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred             hccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            888888877764      3455666665        233333333444555555666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=171.66  Aligned_cols=156  Identities=21%  Similarity=0.250  Sum_probs=129.8

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccc-hhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878          310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIP-AQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM  388 (496)
Q Consensus       310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  388 (496)
                      +.+++++|.++. +|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            588899988874 565543  457899999999986644 4578889999999999999877777888889999999999


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878          389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI  468 (496)
Q Consensus       389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  468 (496)
                      |++++..+..|..+++|++|+|++|++++..|..+..+++|++| +|++|++++..|..|..+++|++|++++|++++..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL-SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE-ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE-ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99988878888888999999999999988888888888888888 89999988877888888888999999998887654


Q ss_pred             c
Q 035878          469 P  469 (496)
Q Consensus       469 p  469 (496)
                      +
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1e-19  Score=175.28  Aligned_cols=187  Identities=25%  Similarity=0.336  Sum_probs=152.6

Q ss_pred             EEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 035878          264 VRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQL  343 (496)
Q Consensus       264 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  343 (496)
                      +.+..+.+++..  .+..+++|++|++++|.+.+. + .+..+++|++|++++|++++..+  +..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            344555555432  234578899999999998754 3 47888999999999999987544  88999999999999999


Q ss_pred             ccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhc
Q 035878          344 SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI  423 (496)
Q Consensus       344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~  423 (496)
                      ++ ++ .+..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..|  +
T Consensus       103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence            85 33 488999999999999999854  4688899999999999999865  568889999999999999986554  8


Q ss_pred             cCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878          424 GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       424 ~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      ..+++|++| ++++|++++ +|. +..+++|++|++++|+++..
T Consensus       175 ~~l~~L~~L-~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          175 AGLTKLQNL-YLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             TTCTTCCEE-ECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             cCCCccCEE-ECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence            889999999 999999985 453 88899999999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=8.3e-20  Score=168.46  Aligned_cols=153  Identities=23%  Similarity=0.298  Sum_probs=125.2

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC
Q 035878          310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN  389 (496)
Q Consensus       310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  389 (496)
                      +.++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            57888888887 4555443  68888999999888766667888888889999888888777888888888888888888


Q ss_pred             cCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       390 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      ++++..+..|..+++|++|+|++|++++..|..|..+++|++| +|++|++++..+..|..+++|++|+|++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL-SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE-ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8886666667888888888888888887778888888888888 888888887777778888888888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=8.6e-20  Score=181.46  Aligned_cols=176  Identities=25%  Similarity=0.193  Sum_probs=113.1

Q ss_pred             cEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEccCCcCccccchhhcCCCCCCEEeccC
Q 035878          286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIG-SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG  364 (496)
Q Consensus       286 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  364 (496)
                      +.++++++.++. +|..+.  +.++.|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            567777777763 454432  3467777777777766666665 677777777777777765556677777777777777


Q ss_pred             CcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhc---cCCccccccccccCCcCC
Q 035878          365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQI---GNLVGLQDLLDLSYNSLT  441 (496)
Q Consensus       365 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~LL~Ls~N~l~  441 (496)
                      |++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+   ..+++|+.| +|++|+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L-~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL-DLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE-ECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE-ECCCCCCC
Confidence            77776555566667777777777777766666666677777777777777664322223   346666666 66666666


Q ss_pred             ccchhhhcCCCC--CCEEEcccCcCC
Q 035878          442 GEIPAQLEKLTS--LQSMNLSHNNLS  465 (496)
Q Consensus       442 ~~~p~~l~~l~~--L~~L~Ls~N~l~  465 (496)
                      +..+..+..++.  ++.|+|++|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            544455555555  356666666664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.7e-19  Score=167.41  Aligned_cols=157  Identities=25%  Similarity=0.286  Sum_probs=127.4

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEcc
Q 035878          308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS  387 (496)
Q Consensus       308 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  387 (496)
                      .-+.++.++++++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3567888888876 4555443  788899999999888778888888889999999998876666667888888889998


Q ss_pred             CCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878          388 MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       388 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      +|++++..+..|..+++|++|++++|+++ .+|..+..+++|++| +|++|++++..+..+..+++|++|++++|++.+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL-ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE-ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE-ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            88888777777788888888888888887 778888888888888 8888888866667788888888888888888765


Q ss_pred             cc
Q 035878          468 IP  469 (496)
Q Consensus       468 ~p  469 (496)
                      .+
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            43

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=8.9e-20  Score=175.74  Aligned_cols=187  Identities=22%  Similarity=0.307  Sum_probs=156.9

Q ss_pred             EecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcc
Q 035878          240 FTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSI  319 (496)
Q Consensus       240 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  319 (496)
                      +.+..+.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            344455544332  245678999999999999865 3 47889999999999999987654  88999999999999999


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhh
Q 035878          320 GGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI  399 (496)
Q Consensus       320 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  399 (496)
                      ++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..+  +
T Consensus       103 ~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          103 KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence            863  3489999999999999999864  4688999999999999999865  578899999999999999997655  8


Q ss_pred             hCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCcc
Q 035878          400 GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE  443 (496)
Q Consensus       400 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~  443 (496)
                      ..+++|++|++++|.+++ ++ .+..+++|+.| ++++|+++..
T Consensus       175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L-~l~~n~i~~~  215 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVL-ELFSQECLNK  215 (291)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEE-EEEEEEEECC
T ss_pred             cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEE-ECcCCcccCC
Confidence            899999999999999985 45 48899999999 9999999853

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=164.98  Aligned_cols=157  Identities=21%  Similarity=0.200  Sum_probs=137.1

Q ss_pred             ccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEecc
Q 035878          285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIP-AEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLN  363 (496)
Q Consensus       285 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  363 (496)
                      -+.+++++|.++. +|..+.  ..+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3589999999874 565543  457899999999997754 457889999999999999997777789999999999999


Q ss_pred             CCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCcc
Q 035878          364 GNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE  443 (496)
Q Consensus       364 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~  443 (496)
                      +|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.+ ++++|.+++.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~c~  168 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL-NLLANPFNCN  168 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE-ECCSCCEECS
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE-EecCcCCcCC
Confidence            999998888889999999999999999998888889999999999999999998889999999999999 9999999865


Q ss_pred             ch
Q 035878          444 IP  445 (496)
Q Consensus       444 ~p  445 (496)
                      .+
T Consensus       169 c~  170 (220)
T 2v70_A          169 CY  170 (220)
T ss_dssp             GG
T ss_pred             Cc
Confidence            44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=6.3e-20  Score=193.69  Aligned_cols=192  Identities=22%  Similarity=0.272  Sum_probs=138.3

Q ss_pred             CCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecC
Q 035878          164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTAS  243 (496)
Q Consensus       164 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~  243 (496)
                      ..+..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|++++++. +..+++|+.|+++
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence            345556666666664433  4567888888888888874 33 47788888888888888888766 7778888888888


Q ss_pred             CCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC
Q 035878          244 FNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI  323 (496)
Q Consensus       244 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  323 (496)
                      +|.+++.  +.+..+++|++|+|++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+++..
T Consensus        96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            8887752  3577778888888888887753  3466777777888877777754  45677777777777777777655


Q ss_pred             CcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc
Q 035878          324 PAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP  370 (496)
Q Consensus       324 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  370 (496)
                      |  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            4  67777777777777777653  3466777777777777777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=1.4e-19  Score=191.02  Aligned_cols=188  Identities=21%  Similarity=0.252  Sum_probs=147.6

Q ss_pred             eEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCC
Q 035878          111 ELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDL  190 (496)
Q Consensus       111 ~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  190 (496)
                      .++++.+.+.+.++           +..+++|++|++++|.+... + .+..+++|++|+|++|.+++..|  +..+++|
T Consensus        25 ~l~l~~~~i~~~~~-----------~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L   89 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT-----------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNL   89 (605)
T ss_dssp             HHHTTCSCTTSEEC-----------HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTC
T ss_pred             HHhccCCCcccccc-----------hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCC
Confidence            45566666653332           45678899999999988743 3 58889999999999999886544  8888999


Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCC
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNE  270 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~  270 (496)
                      ++|+|++|.+++ +| .+..+++|++|+|++|.+.+++ .+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.
T Consensus        90 ~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A           90 GWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             CEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred             CEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence            999999998875 33 6888899999999999888874 477788888888888888865  567888888888888888


Q ss_pred             CCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccccc
Q 035878          271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGK  322 (496)
Q Consensus       271 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  322 (496)
                      +.+..|  +..+++|+.|++++|.+++.  +.+..+++|+.|++++|.+.+.
T Consensus       165 l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          165 ISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            887665  77888888888888888764  3577888888888888887754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=5e-19  Score=175.97  Aligned_cols=127  Identities=24%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             ceEecccCcCCcccCccCCCCCCCCEEECCCCCCcccccccc--CCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccC
Q 035878          191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVC--KGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLES  268 (496)
Q Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  268 (496)
                      ++++++++.++ .+|..+.  +.+++|++++|++++++...+  .+++|++|++++|++++..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            35555555555 3444332  235555555555555433322  444444444444444444444444444444444444


Q ss_pred             CCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc
Q 035878          269 NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG  320 (496)
Q Consensus       269 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  320 (496)
                      |++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            4444333334444444444444444444443444444444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=1e-18  Score=161.16  Aligned_cols=114  Identities=25%  Similarity=0.281  Sum_probs=52.3

Q ss_pred             cCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCC
Q 035878          279 FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELS  358 (496)
Q Consensus       279 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  358 (496)
                      |..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..|..+++|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            33334444444444444433344444444444444444444433333344444444444444444444444444455555


Q ss_pred             EEeccCCcCccccchhhcCCCCCCEEEccCCcCC
Q 035878          359 TLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS  392 (496)
Q Consensus       359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  392 (496)
                      +|+|++|++++..+..+..+++|++|++++|.+.
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5555555554444444444555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=2.8e-19  Score=162.01  Aligned_cols=152  Identities=20%  Similarity=0.339  Sum_probs=84.0

Q ss_pred             CCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEe
Q 035878          330 LSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLS  409 (496)
Q Consensus       330 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~  409 (496)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344555555555554 333 3445555555555555443  122455555555555555555544455555556666666


Q ss_pred             ccCccCCccCChhccCCccccccccccCCc-CCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCC
Q 035878          410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNS-LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL  488 (496)
Q Consensus       410 Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  488 (496)
                      +++|++++..|..+..+++|++| ++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L-~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSI-DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEE-ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEE-EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            66666655555556666666666 666665 33 344 46666677777777777664 33 566667777777777766


Q ss_pred             cc
Q 035878          489 EG  490 (496)
Q Consensus       489 ~g  490 (496)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=7.8e-20  Score=197.55  Aligned_cols=190  Identities=24%  Similarity=0.260  Sum_probs=119.5

Q ss_pred             cCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCcccc
Q 035878          292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPI  371 (496)
Q Consensus       292 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  371 (496)
                      .|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+
T Consensus       210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          210 ENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence            34443 44667788888889999888887 56666778889999999999988 78888888999999999999988 77


Q ss_pred             chhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCC
Q 035878          372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKL  451 (496)
Q Consensus       372 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l  451 (496)
                      |..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+......++|++|.++|.+|.     
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----  359 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----  359 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-----
Confidence            888888999999999999887 67777889999999999999999888887766543332238999999988876     


Q ss_pred             CCCCEEEcccC--------cCCcccchhhhcCCCCCEEeCcCCCCcccC
Q 035878          452 TSLQSMNLSHN--------NLSGEIPASLSSMLSLVAVNLSYNNLEGPL  492 (496)
Q Consensus       452 ~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  492 (496)
                       .|+.|++++|        .+.+..+..+..+..+....+++|-+.+..
T Consensus       360 -~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~  407 (727)
T 4b8c_D          360 -ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY  407 (727)
T ss_dssp             -C-----------------------------------------CCCGGG
T ss_pred             -ccceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence             3456677776        455555556667777788888888886543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.4e-18  Score=157.44  Aligned_cols=152  Identities=20%  Similarity=0.304  Sum_probs=85.9

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEE
Q 035878          306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLD  385 (496)
Q Consensus       306 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  385 (496)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344555555555554 223 34455555555555554431  22455556666666666666555555556666666666


Q ss_pred             ccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       386 Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      +++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|++| ++++|++++ ++ .+..+++|++|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L-~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL-NIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE-ECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE-ECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            66666665555566666666666666665222444 45666666666 666666664 33 5667777777777777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=1.1e-21  Score=205.77  Aligned_cols=122  Identities=30%  Similarity=0.354  Sum_probs=98.7

Q ss_pred             CCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878          356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL  435 (496)
Q Consensus       356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L  435 (496)
                      .|+.|++++|.+++ +|. ++.+++|++|++++|+++ .+|..++.+++|++|+|++|++++ +| .++.+++|+.| +|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L-~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL-LL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE-EC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE-EC
Confidence            47888888888885 565 888888888888888888 678888888888888888888885 66 78888888888 88


Q ss_pred             cCCcCCccc-hhhhcCCCCCCEEEcccCcCCcccch---hhhcCCCCCEEeC
Q 035878          436 SYNSLTGEI-PAQLEKLTSLQSMNLSHNNLSGEIPA---SLSSMLSLVAVNL  483 (496)
Q Consensus       436 s~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l  483 (496)
                      ++|++++.+ |..++++++|++|+|++|++++.+|.   .+..+++|+.||+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888888776 88888888888888888888876542   3455788888874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=7.8e-19  Score=166.50  Aligned_cols=170  Identities=25%  Similarity=0.300  Sum_probs=139.3

Q ss_pred             CCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878          282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS  361 (496)
Q Consensus       282 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  361 (496)
                      +.+++.++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            455777788888887543  57788999999999999884 44 67888999999999999986544  88999999999


Q ss_pred             ccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC
Q 035878          362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT  441 (496)
Q Consensus       362 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~  441 (496)
                      +++|++++ +|.. .. ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|++| ++++|+++
T Consensus        92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L-~L~~N~i~  163 (263)
T 1xeu_A           92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL-DLHGNEIT  163 (263)
T ss_dssp             CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE-ECTTSCCC
T ss_pred             CCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE-ECCCCcCc
Confidence            99999985 4432 33 889999999999985 34 588899999999999999854 4 68888999999 99999998


Q ss_pred             ccchhhhcCCCCCCEEEcccCcCCcc
Q 035878          442 GEIPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       442 ~~~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      +.  ..+..+++|++|++++|++++.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ch--HHhccCCCCCEEeCCCCcccCC
Confidence            65  6688899999999999998865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=1.1e-18  Score=165.48  Aligned_cols=168  Identities=18%  Similarity=0.213  Sum_probs=86.3

Q ss_pred             CCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEE
Q 035878          139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLH  218 (496)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (496)
                      +.+++.++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555556666655332  3555666666666666665 233 45666666666666666664333  66666666666


Q ss_pred             CCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc
Q 035878          219 LFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       219 L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      +++|+++++|....  ++|++|++++|++++.  +.+..+++|++|++++|++++. + .+..+++|++|++++|.+++.
T Consensus        92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            66666666543222  4555555555555432  2344445555555555544432 1 334444444444444444433


Q ss_pred             CCcCcCCCCCCCEEEccCCccc
Q 035878          299 VSPKWGKCQKLTLLGLAGNSIG  320 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~~n~l~  320 (496)
                        ..+..+++|+.|++++|.++
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCccc
Confidence              23334444444444444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=3.7e-19  Score=174.55  Aligned_cols=219  Identities=13%  Similarity=0.056  Sum_probs=144.5

Q ss_pred             CCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCc----ccccCCcccCCCCCC
Q 035878          258 CSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNS----IGGKIPAEIGSLSQL  333 (496)
Q Consensus       258 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~l~~l~~L  333 (496)
                      +++|+.+++.. .++...+.+|..+++|+.+++++|.+....+..|..+.++..+....+.    ........|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            77777777777 6665555667777777777777777766666667666666666554422    122223345555666


Q ss_pred             C-EEEccCCcCccccchhh----cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEE
Q 035878          334 V-VLDLSSNQLSGEIPAQI----GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSL  408 (496)
Q Consensus       334 ~-~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L  408 (496)
                      + .+.+....   .++..+    ....+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++|++|
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            6 44443322   222211    134566667666553221111111237888888888888886666678888888888


Q ss_pred             eccCccCCccCChhccCCcccc-ccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeC
Q 035878          409 SLSQNNLNGTIPFQIGNLVGLQ-DLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNL  483 (496)
Q Consensus       409 ~Ls~n~l~~~~p~~~~~l~~L~-~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  483 (496)
                      ++++| ++...+..|.++.+|+ .+ ++.+ .++..-+..|.+|++|+++++++|+++...+..|.++++|+.++.
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l-~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTL-ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEE-EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ECCcc-cceehHHHhhCChhccEEE-EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88887 6655667788888888 88 8887 676555678888999999999888888777778888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=1.9e-20  Score=196.41  Aligned_cols=195  Identities=19%  Similarity=0.180  Sum_probs=140.5

Q ss_pred             CCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEE
Q 035878          281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL  360 (496)
Q Consensus       281 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  360 (496)
                      .++.|+.|++++|.++ .+|..++.+++|+.|++++|......|..           +..+...+..|..++.+++|+.|
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccC
Confidence            4455555555555554 44555555555555555443210000000           00111445566667777777777


Q ss_pred             e-ccCCcCccccch------hhcC--CCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccc
Q 035878          361 S-LNGNDISGPIPE------EIGA--LLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD  431 (496)
Q Consensus       361 ~-Ls~n~l~~~~~~------~~~~--l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  431 (496)
                      + ++.|.+.. ++.      .+..  ...|+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..++.+++|+.
T Consensus       415 ~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  490 (567)
T 1dce_A          415 DPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV  490 (567)
T ss_dssp             CGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred             cchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence            7 55554321 110      0111  1369999999999996 676 999999999999999999 89999999999999


Q ss_pred             cccccCCcCCccchhhhcCCCCCCEEEcccCcCCccc-chhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI-PASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       432 LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      | +|++|++++ +| .++++++|++|+|++|++++.+ |..|..+++|+.|++++|+++|.+|.
T Consensus       491 L-~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          491 L-QASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             E-ECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             E-ECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9 999999996 77 8999999999999999999887 99999999999999999999998774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=5.8e-18  Score=152.60  Aligned_cols=132  Identities=27%  Similarity=0.387  Sum_probs=113.0

Q ss_pred             CEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccch-hhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccC
Q 035878          334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE-EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQ  412 (496)
Q Consensus       334 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~  412 (496)
                      +++++++|.++ .+|..+.  +++++|++++|++++..+. .+..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78899999986 6676554  3899999999999866554 488899999999999999988888899999999999999


Q ss_pred             ccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc
Q 035878          413 NNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP  469 (496)
Q Consensus       413 n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  469 (496)
                      |++++..+..+..+++|++| +|++|++++.+|..+..+++|++|++++|++++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTL-NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEE-ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEE-ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99998888888889999998 999999998888889899999999999999987655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=3.1e-18  Score=167.95  Aligned_cols=222  Identities=10%  Similarity=0.014  Sum_probs=141.1

Q ss_pred             CCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcc----cccCCcCcCCCCCC
Q 035878          234 GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRL----QGEVSPKWGKCQKL  309 (496)
Q Consensus       234 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l----~~~~~~~~~~~~~L  309 (496)
                      +++|+.+++.. .++..-+.+|.+|++|+.+++..|.+....+..|..+.++..+....+..    .......|..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            34444444444 34333344566666666666666666655555666666665555544221    11223344555556


Q ss_pred             C-EEEccCCc-ccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEcc
Q 035878          310 T-LLGLAGNS-IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS  387 (496)
Q Consensus       310 ~-~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  387 (496)
                      + .+.+.... +.......-....+++.+.+.++-...........+++|+++++++|+++...+..|..+++|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            5 44443321 110111111234566777776653322222222347889999999988886666778889999999998


Q ss_pred             CCcCCCCChhhhhCCCCCC-EEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878          388 MNRLSGPIPKQIGELRDLR-SLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL  459 (496)
Q Consensus       388 ~n~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L  459 (496)
                      +| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+ ++++|+++..-+..|.++++|+.+..
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l-~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV-LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE-EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE-EeCCCccCccchhhhcCCcchhhhcc
Confidence            87 7756667889999999 999988 7775667889999999999 99999998666778999999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=2.6e-17  Score=144.88  Aligned_cols=132  Identities=23%  Similarity=0.263  Sum_probs=72.6

Q ss_pred             CCCCEEeccCCcCc-cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccc
Q 035878          355 TELSTLSLNGNDIS-GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL  433 (496)
Q Consensus       355 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL  433 (496)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++| 
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL-  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE-
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE-
Confidence            44555555555554 34444445555555555555555533  345555555555555555554455555555555555 


Q ss_pred             cccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcccc---hhhhcCCCCCEEeCcCCCCc
Q 035878          434 DLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGEIP---ASLSSMLSLVAVNLSYNNLE  489 (496)
Q Consensus       434 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~  489 (496)
                      ++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555555532 11455666666666666666664443   35666666666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=5.5e-17  Score=146.13  Aligned_cols=173  Identities=21%  Similarity=0.302  Sum_probs=138.7

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccch-hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878          310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPA-QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM  388 (496)
Q Consensus       310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  388 (496)
                      +.+++++|.++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999996 56765543  899999999999976654 489999999999999999998899999999999999999


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchh-hhcCCCCCCEEEcccCcCCcc
Q 035878          389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPA-QLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      |++++..+..|..+++|++|++++|++++..|..+..+++|+++ ++++|.+++..+. ++..  .++...+..+.....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~  164 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL-NLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG  164 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE-ECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE-EeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence            99998888889999999999999999999999999999999999 9999999986552 2211  122223444555545


Q ss_pred             cchhhhcCCCCCEEeCcCCCCccc
Q 035878          468 IPASLSSMLSLVAVNLSYNNLEGP  491 (496)
Q Consensus       468 ~p~~l~~l~~L~~L~ls~N~l~g~  491 (496)
                      .|..+.   .....++..+.+.-.
T Consensus       165 ~P~~l~---~~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          165 APSKVR---DVQIKDLPHSEFKCS  185 (192)
T ss_dssp             SSTTTT---TSBGGGSCTTTCCCC
T ss_pred             CChHHc---CCChhhCcHhhcCcC
Confidence            565544   345556777776533

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=3.2e-17  Score=141.29  Aligned_cols=128  Identities=20%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             CCCCEEeccCCcCc-cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccc
Q 035878          355 TELSTLSLNGNDIS-GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL  433 (496)
Q Consensus       355 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL  433 (496)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+++ 
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L-   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL-   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE-
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE-
Confidence            45666666666665 45555556666666666666666644  456666667777777777666566666666777777 


Q ss_pred             cccCCcCCcc-chhhhcCCCCCCEEEcccCcCCcccc---hhhhcCCCCCEEeCcC
Q 035878          434 DLSYNSLTGE-IPAQLEKLTSLQSMNLSHNNLSGEIP---ASLSSMLSLVAVNLSY  485 (496)
Q Consensus       434 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~  485 (496)
                      ++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|++||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777777652 34667778888888888888876655   4677788888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=1.7e-15  Score=152.12  Aligned_cols=265  Identities=12%  Similarity=0.120  Sum_probs=173.7

Q ss_pred             CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878          138 GLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL  217 (496)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (496)
                      .+..++.+.+.++ ++.....+|.++ +|+.+++..+ ++.....+|.++ +|+.+.+.. .++...+.+|.+|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3456777777653 555666777776 7999998776 665556667774 689998886 6665666788889999999


Q ss_pred             ECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc
Q 035878          218 HLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG  297 (496)
Q Consensus       218 ~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  297 (496)
                      ++..|+++.++...+...+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++......|.. .+|+.+.+ .+.++.
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~  261 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN  261 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE
Confidence            9998888888888777888888888744 55455567778888888888764 44344455655 67777777 344555


Q ss_pred             cCCcCcCCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc
Q 035878          298 EVSPKWGKCQKLTLLGLAGNSIG-----GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP  372 (496)
Q Consensus       298 ~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  372 (496)
                      .....|.+|++|+.+++.+|.+.     ...+..|.+|++|+.+++.+ .++..-...|.+|++|+.+.+..+ ++..-.
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            55666777777777777766554     23445566666666666663 354344455666666666666443 443444


Q ss_pred             hhhcCCCCCCEEEccCCcCCCCChhhhhCCC-CCCEEeccCcc
Q 035878          373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELR-DLRSLSLSQNN  414 (496)
Q Consensus       373 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~Ls~n~  414 (496)
                      ..|..+ +|+.+++++|.+....+..|..++ .++.|.+..+.
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            555566 666666666655544444454442 45555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=1.2e-16  Score=140.59  Aligned_cols=132  Identities=21%  Similarity=0.224  Sum_probs=72.0

Q ss_pred             CCccEEEcccCccc-ccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878          283 PNLTYIDLSYNRLQ-GEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS  361 (496)
Q Consensus       283 ~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  361 (496)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 44455555555555566655555543  4455555566666666665554555555555666666


Q ss_pred             ccCCcCcccc-chhhcCCCCCCEEEccCCcCCCCCh---hhhhCCCCCCEEeccCccCC
Q 035878          362 LNGNDISGPI-PEEIGALLNLDSLDLSMNRLSGPIP---KQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       362 Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~---~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      +++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666555321 1445555555555555555554333   24555555555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=1.9e-16  Score=140.66  Aligned_cols=134  Identities=25%  Similarity=0.282  Sum_probs=106.6

Q ss_pred             CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEecc
Q 035878          332 QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS  411 (496)
Q Consensus       332 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls  411 (496)
                      ..+.++++++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3567888888887 455443  3688899999888887666677888888889998888887666677888888888888


Q ss_pred             CccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc
Q 035878          412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP  469 (496)
Q Consensus       412 ~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  469 (496)
                      +|++++..+..+..+++|++| ++++|++++..+..+..+++|++|++++|++++..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKEL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEE-ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888887666667888888888 888888886655667788888888888888887655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=7.5e-17  Score=138.91  Aligned_cols=126  Identities=23%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             CCCEEEccCCcCc-cccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEec
Q 035878          332 QLVVLDLSSNQLS-GEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSL  410 (496)
Q Consensus       332 ~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L  410 (496)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4445555555544 34444444555555555555555433  34455555555555555555445555555555555555


Q ss_pred             cCccCCcc-CChhccCCccccccccccCCcCCccch---hhhcCCCCCCEEEcc
Q 035878          411 SQNNLNGT-IPFQIGNLVGLQDLLDLSYNSLTGEIP---AQLEKLTSLQSMNLS  460 (496)
Q Consensus       411 s~n~l~~~-~p~~~~~l~~L~~LL~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls  460 (496)
                      ++|++++. .+..+..+++|+++ ++++|++++..+   ..+..+++|++||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSL-DLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEE-ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEE-eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555542 23455555666666 666666654433   356666666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.1e-16  Score=141.26  Aligned_cols=128  Identities=27%  Similarity=0.369  Sum_probs=98.6

Q ss_pred             CEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCc
Q 035878          334 VVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQN  413 (496)
Q Consensus       334 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n  413 (496)
                      +++++++|.++ .+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57788888877 5565442  57888888888887 66777888888888888888888777777888888888888888


Q ss_pred             cCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          414 NLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       414 ~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      ++++..|..|..+++|++| +|++|++++..+..|..+++|++|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLL-SLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEE-ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEE-ECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8887777777788888888 888888886555567778888888888887754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=8.1e-15  Score=147.09  Aligned_cols=262  Identities=11%  Similarity=0.113  Sum_probs=116.0

Q ss_pred             CCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878          188 SDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE  267 (496)
Q Consensus       188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  267 (496)
                      ..++.+.+.+ .++.....+|.++ +|+.+++..+ ++.|+...+...+|+.+.+.. .+...-+.+|.+|++|+.+++.
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence            4444444443 2332333444443 4555555443 444444333333455554443 3333333455556666666666


Q ss_pred             CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccc
Q 035878          268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEI  347 (496)
Q Consensus       268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  347 (496)
                      .|.++......|. +.+|+.+.+..+ +.......|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++..-
T Consensus       189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~  263 (401)
T 4fdw_A          189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA  263 (401)
T ss_dssp             TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred             CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC
Confidence            5555544334444 355555555532 44444445555555555555543 33333344444 455555552 2233233


Q ss_pred             chhhcCCCCCCEEeccCCcCc-----cccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChh
Q 035878          348 PAQIGNLTELSTLSLNGNDIS-----GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ  422 (496)
Q Consensus       348 ~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~  422 (496)
                      ...|.+|++|+.+++.+|.+.     ...+..|..|++|+.+++.+ .++..-..+|.+|++|+.+.+..+ ++..-+..
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            444555555555555554443     12233344444444444442 233223334444444444444332 33222333


Q ss_pred             ccCCccccccccccCCcCCccchhhhcCCC-CCCEEEcccC
Q 035878          423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLT-SLQSMNLSHN  462 (496)
Q Consensus       423 ~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N  462 (496)
                      |.++ +|+.+ ++++|.+....+..|.+++ +++.|.+..+
T Consensus       342 F~~~-~L~~l-~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          342 FNNT-GIKEV-KVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             SSSS-CCCEE-EECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CCCC-CCCEE-EEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            4444 44444 4444444332233333332 3344444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.5e-15  Score=134.70  Aligned_cols=133  Identities=26%  Similarity=0.273  Sum_probs=104.8

Q ss_pred             CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccC
Q 035878          309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM  388 (496)
Q Consensus       309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  388 (496)
                      .+.+++++++++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4678888888774 44333  36888888888888866666678888888888888888876666678888888888888


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccch
Q 035878          389 NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP  445 (496)
Q Consensus       389 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p  445 (496)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+++ ++++|.+++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI-WLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE-ECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE-EecCCCeeccCc
Confidence            88887777777888888888888888886555556778888888 888888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=2.3e-14  Score=143.90  Aligned_cols=326  Identities=9%  Similarity=0.005  Sum_probs=183.3

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      |.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++..++
T Consensus        67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            555666666666532 44444555666666666666543 33333445556666666555433 2223334444443222


Q ss_pred             EEECCCCCCcccc-ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCc
Q 035878          216 DLHLFINKLSGLP-PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNR  294 (496)
Q Consensus       216 ~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~  294 (496)
                      ......  ...+. ..+..+.+|+.+.+..+. ...-...|.++.+|+.+.+..+ ++......|..+..|+.+.+..+.
T Consensus       144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          144 ITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             cccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence            222111  11111 223344555555554432 2122345566666666666554 333334456666666666665443


Q ss_pred             ccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878          295 LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE  374 (496)
Q Consensus       295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  374 (496)
                      ..  +.........|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....+.+.   ...
T Consensus       220 ~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~  292 (394)
T 4fs7_A          220 YY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKT  292 (394)
T ss_dssp             CE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTT
T ss_pred             eE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccc
Confidence            22  2223334456777766543 33334455667777777777666443 44455677777777776655432   235


Q ss_pred             hcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCC
Q 035878          375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL  454 (496)
Q Consensus       375 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L  454 (496)
                      |..+.+|+.+.+.++ ++..-..+|.++.+|+.+++.++ ++..-...|.+|.+|+.+ ++..+ ++..-..+|.+|++|
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i-~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI-NFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE-CCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE-EECcc-ccEehHHHhhCCCCC
Confidence            667777888877654 44344566777888888888644 554445677788888888 78766 554445678888888


Q ss_pred             CEEEcccCcCCcccchhhhcCCCCCEE
Q 035878          455 QSMNLSHNNLSGEIPASLSSMLSLVAV  481 (496)
Q Consensus       455 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L  481 (496)
                      +.+++..+ ++ .+...|.++++|+.+
T Consensus       369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CEEEECCC-CE-EhhheecCCCCCcEE
Confidence            88888754 33 345667777777764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=136.68  Aligned_cols=128  Identities=27%  Similarity=0.360  Sum_probs=110.6

Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCC
Q 035878          310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN  389 (496)
Q Consensus       310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  389 (496)
                      +.+++++|.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            67889999888 4565443  58999999999998 67788999999999999999999887888999999999999999


Q ss_pred             cCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCc
Q 035878          390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTG  442 (496)
Q Consensus       390 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~  442 (496)
                      ++++..+..|..+++|++|+|++|++++..+..|..+++|+.+ ++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL-AIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE-ECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE-EeCCCCeec
Confidence            9998888889999999999999999986666678889999999 999998875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=2.3e-14  Score=143.93  Aligned_cols=318  Identities=14%  Similarity=0.080  Sum_probs=235.3

Q ss_pred             CcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccc
Q 035878          152 LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV  231 (496)
Q Consensus       152 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l  231 (496)
                      ++.+...+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++......|.++++|+.+.+..+ +..+....
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            45555678999999999999854 66566778999999999999865 55455678889999998877644 44444444


Q ss_pred             cCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCE
Q 035878          232 CKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL  311 (496)
Q Consensus       232 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  311 (496)
                      +....+........ ....-..+|.++++|+.+.+..+. .......|..+++|+.+++..+ ++......|..+..|+.
T Consensus       136 F~~~~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          136 FKGCDFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTCCCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eecccccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            33333333333222 222234678899999999997654 3344567888999999999776 55455677889999999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcC
Q 035878          312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRL  391 (496)
Q Consensus       312 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  391 (496)
                      +.+..+...  +........+|+.+.+.... +......+..+..++.+.+..+... .....|..+..++.+....+.+
T Consensus       213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i  288 (394)
T 4fs7_A          213 MEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV  288 (394)
T ss_dssp             CCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred             eecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence            888766433  23344456789999887543 3344556889999999999887554 5566788899999998887664


Q ss_pred             CCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878          392 SGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       392 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  471 (496)
                      .   ...|..+.+|+.+.+.++ ++......|.++.+|+.+ ++..+ ++..-..+|.+|++|+.+++..+ ++..-..+
T Consensus       289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i-~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a  361 (394)
T 4fs7_A          289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI-DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA  361 (394)
T ss_dssp             C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE-CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred             c---cccccccccccccccccc-cceechhhhcCCCCCCEE-EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence            4   246888999999999865 654556778999999999 99754 66444678999999999999877 77566778


Q ss_pred             hhcCCCCCEEeCcCC
Q 035878          472 LSSMLSLVAVNLSYN  486 (496)
Q Consensus       472 l~~l~~L~~L~ls~N  486 (496)
                      |.+|.+|+.+++..+
T Consensus       362 F~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          362 FQGCINLKKVELPKR  376 (394)
T ss_dssp             BTTCTTCCEEEEEGG
T ss_pred             hhCCCCCCEEEECCC
Confidence            999999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=6.1e-18  Score=153.23  Aligned_cols=150  Identities=24%  Similarity=0.311  Sum_probs=107.2

Q ss_pred             CCCEEEccCCcCccccch------hhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCC
Q 035878          332 QLVVLDLSSNQLSGEIPA------QIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL  405 (496)
Q Consensus       332 ~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L  405 (496)
                      .++.++++.+.++|.+|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            444444444444444443      67777888888888888775 55 6777788888888888887 566667677788


Q ss_pred             CEEeccCccCCccCChhccCCccccccccccCCcCCccch-hhhcCCCCCCEEEcccCcCCcccch----------hhhc
Q 035878          406 RSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP-AQLEKLTSLQSMNLSHNNLSGEIPA----------SLSS  474 (496)
Q Consensus       406 ~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~  474 (496)
                      ++|++++|++++ +| .+..+++|++| ++++|++++..+ ..+..+++|++|++++|++++.+|.          .+..
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L-~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVL-YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEE-EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEE-ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            888888888875 44 57777888888 888888874322 4677888888888888888776654          2778


Q ss_pred             CCCCCEEeCcCCCCc
Q 035878          475 MLSLVAVNLSYNNLE  489 (496)
Q Consensus       475 l~~L~~L~ls~N~l~  489 (496)
                      +++|++||  +|.++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            88888887  56554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=1.2e-15  Score=135.29  Aligned_cols=132  Identities=20%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCC
Q 035878          327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR  406 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~  406 (496)
                      +.++++|++|++++|.++. ++......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3345556666666665552 333222223555555555555533  3445555555555555555533333335555555


Q ss_pred             EEeccCccCCccCCh--hccCCccccccccccCCcCCccchhh----hcCCCCCCEEEcccCcC
Q 035878          407 SLSLSQNNLNGTIPF--QIGNLVGLQDLLDLSYNSLTGEIPAQ----LEKLTSLQSMNLSHNNL  464 (496)
Q Consensus       407 ~L~Ls~n~l~~~~p~--~~~~l~~L~~LL~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l  464 (496)
                      +|++++|+++ .+|.  .+..+++|+.+ ++++|.++ .+|..    +..+++|++||+++|..
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L-~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYL-CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEE-ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEE-EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            5555555553 3333  44444455554 55555544 23332    44445555555554444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=3.6e-15  Score=132.23  Aligned_cols=132  Identities=24%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             CCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCE
Q 035878          304 GKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDS  383 (496)
Q Consensus       304 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  383 (496)
                      ..+.+|++|++++|.++. +|......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            344555555555555552 232222222555555555555533  34555555555555555555433333355555555


Q ss_pred             EEccCCcCCCCChh--hhhCCCCCCEEeccCccCCccCChh----ccCCccccccccccCCcCC
Q 035878          384 LDLSMNRLSGPIPK--QIGELRDLRSLSLSQNNLNGTIPFQ----IGNLVGLQDLLDLSYNSLT  441 (496)
Q Consensus       384 L~Ls~n~l~~~~~~--~l~~~~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~LL~Ls~N~l~  441 (496)
                      |++++|+++ .+|.  .+..+++|++|++++|+++ .+|..    +..+++|+.+ |+++|.+.
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~L-d~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL-DFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE-TTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcccee-CCCcCCHH
Confidence            555555554 3333  4555555555555555554 33332    4555555555 55555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=2.6e-17  Score=149.11  Aligned_cols=133  Identities=25%  Similarity=0.309  Sum_probs=92.4

Q ss_pred             ccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCC
Q 035878          326 EIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL  405 (496)
Q Consensus       326 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L  405 (496)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            56666777777777777764 45 6666777777777777776 556666666777777777777774 44 46677777


Q ss_pred             CEEeccCccCCccCC-hhccCCccccccccccCCcCCccchh----------hhcCCCCCCEEEcccCcCCc
Q 035878          406 RSLSLSQNNLNGTIP-FQIGNLVGLQDLLDLSYNSLTGEIPA----------QLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       406 ~~L~Ls~n~l~~~~p-~~~~~l~~L~~LL~Ls~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      ++|++++|++++..+ ..+..+++|+++ ++++|.+++.+|.          .+..+++|++||  +|.++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDL-LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEE-EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEE-EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            777777777764322 356777777777 7777777765554          377888999887  666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=3.6e-14  Score=124.95  Aligned_cols=109  Identities=23%  Similarity=0.257  Sum_probs=90.7

Q ss_pred             CCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878          356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL  435 (496)
Q Consensus       356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L  435 (496)
                      ..+++++++|.++ .+|..+.  ++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++| +|
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L-~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL-SL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE-EC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE-EC
Confidence            3578899999988 4666553  788999999999998878888889999999999999987666677888999988 99


Q ss_pred             cCCcCCccchhhhcCCCCCCEEEcccCcCCccc
Q 035878          436 SYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEI  468 (496)
Q Consensus       436 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  468 (496)
                      ++|++++..+..|.++++|++|+|++|+++...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999998766667888999999999999887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=1.2e-13  Score=122.10  Aligned_cols=107  Identities=22%  Similarity=0.274  Sum_probs=89.1

Q ss_pred             CCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccccccc
Q 035878          357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS  436 (496)
Q Consensus       357 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls  436 (496)
                      -+.+++++|+++ .+|..+.  ++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++| +|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L-~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL-DLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE-ECC
Confidence            368899999986 6676554  789999999999998888888899999999999999986655667888999998 999


Q ss_pred             CCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878          437 YNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       437 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      +|++++..+..|.++++|++|+|++|++...
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999866666688899999999999988754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.4e-13  Score=119.65  Aligned_cols=109  Identities=28%  Similarity=0.275  Sum_probs=95.0

Q ss_pred             CCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEecc
Q 035878          332 QLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS  411 (496)
Q Consensus       332 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls  411 (496)
                      ..+++++++|.++ .+|..+  .++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999998 466655  3889999999999998888889999999999999999998777778899999999999


Q ss_pred             CccCCccCChhccCCccccccccccCCcCCccc
Q 035878          412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI  444 (496)
Q Consensus       412 ~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~  444 (496)
                      +|++++..+..+..+++|++| +|++|.++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L-~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHI-WLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEE-ECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEE-EeCCCCCCCCc
Confidence            999997777778999999999 99999998653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.46  E-value=2.1e-11  Score=122.34  Aligned_cols=305  Identities=11%  Similarity=0.127  Sum_probs=152.9

Q ss_pred             CCCCCCCcEEEccCCc---CcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCC
Q 035878          136 MTGLLGLKNFLLQDNM---LSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLS  212 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  212 (496)
                      |.++++|+.+.+..|.   ++..-..+|.+|.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..+.
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~  160 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY  160 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence            6677777777776653   44444556777777777666544 33344455667777777777543 3324445666677


Q ss_pred             CCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEccc
Q 035878          213 KLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSY  292 (496)
Q Consensus       213 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~  292 (496)
                      +|+.+.+..+ ++.+....+...+|+.+.+..+-. ......+.++.+++................+........-.   
T Consensus       161 ~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  235 (394)
T 4gt6_A          161 SLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL---  235 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE---
T ss_pred             ccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccccc---
Confidence            7777777543 444555555556666666654321 12234455666666665544433211000000000000000   


Q ss_pred             CcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccc
Q 035878          293 NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP  372 (496)
Q Consensus       293 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  372 (496)
                              ..+.....+..+.+.. .++......|.++..|+.+.+.++... .....|.++++|+.+.+. +.++....
T Consensus       236 --------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~  304 (394)
T 4gt6_A          236 --------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE  304 (394)
T ss_dssp             --------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT
T ss_pred             --------cccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc
Confidence                    0011122233333321 222233345566666666666544332 333455666666666664 23433344


Q ss_pred             hhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCC
Q 035878          373 EEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT  452 (496)
Q Consensus       373 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~  452 (496)
                      ..|..+.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++..-...|.+|++|+.+ ++.++...   ...+..+.
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i-~~~~~~~~---~~~~~~~~  378 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI-EYSGSRSQ---WNAISTDS  378 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE-EESSCHHH---HHTCBCCC
T ss_pred             eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE-EECCceee---hhhhhccC
Confidence            45666666666666543 43333456666777777777543 443334566667777776 66665432   13455666


Q ss_pred             CCCEEEcccCcC
Q 035878          453 SLQSMNLSHNNL  464 (496)
Q Consensus       453 ~L~~L~Ls~N~l  464 (496)
                      .|+.+.+..+.+
T Consensus       379 ~L~~i~i~~~~~  390 (394)
T 4gt6_A          379 GLQNLPVAPGSI  390 (394)
T ss_dssp             CC----------
T ss_pred             CCCEEEeCCCCE
Confidence            777776665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=5.9e-13  Score=117.55  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      ++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            56778888888888777777888888888888888888655555678888888888888887655556778888888888


Q ss_pred             CCCCCccccc
Q 035878          220 FINKLSGLPP  229 (496)
Q Consensus       220 ~~n~l~~lp~  229 (496)
                      ++|.+...+.
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            8887776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=7.9e-15  Score=145.75  Aligned_cols=182  Identities=21%  Similarity=0.216  Sum_probs=101.6

Q ss_pred             CCCCEEEccCCcccccCCccc----C-CCCCCCEEEccCCcCccccchh-hcCCCCCCEEeccCCcCccccchhh-----
Q 035878          307 QKLTLLGLAGNSIGGKIPAEI----G-SLSQLVVLDLSSNQLSGEIPAQ-IGNLTELSTLSLNGNDISGPIPEEI-----  375 (496)
Q Consensus       307 ~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~-----  375 (496)
                      +.|+.|++++|.++......+    . ..++|++|+|++|.++...... ...+++|++|+|++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            345556666655553222221    1 2246666666666665432222 2234566777777776654433333     


Q ss_pred             cCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCcc----CChhccCCccccccccccCCcCCcc----
Q 035878          376 GALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNGT----IPFQIGNLVGLQDLLDLSYNSLTGE----  443 (496)
Q Consensus       376 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~LL~Ls~N~l~~~----  443 (496)
                      ...++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.    ++..+...+.|++| +|++|.+++.    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L-~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL-NVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE-ECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE-ECCCCCCCHHHHHH
Confidence            2345677777777776532    333445667777777777776543    23445556677777 7777777642    


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhhcCCC-----CCEEe--CcCCCCc
Q 035878          444 IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLS-----LVAVN--LSYNNLE  489 (496)
Q Consensus       444 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-----L~~L~--ls~N~l~  489 (496)
                      +...+...++|++|+|++|.+++.....+..+..     |+.+.  +..|.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            3444556677888888888887655555544321     55555  5555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=1.9e-14  Score=143.08  Aligned_cols=160  Identities=21%  Similarity=0.276  Sum_probs=125.6

Q ss_pred             CCCCCEEEccCCcCccccchhhc-----CCCCCCEEeccCCcCccccchhh-cCCCCCCEEEccCCcCCCCChhhh----
Q 035878          330 LSQLVVLDLSSNQLSGEIPAQIG-----NLTELSTLSLNGNDISGPIPEEI-GALLNLDSLDLSMNRLSGPIPKQI----  399 (496)
Q Consensus       330 l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l----  399 (496)
                      .+.|++|++++|.++......+.     ..++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45799999999999865433333     23799999999999975433333 346789999999999986544444    


Q ss_pred             -hCCCCCCEEeccCccCCcc----CChhccCCccccccccccCCcCCcc----chhhhcCCCCCCEEEcccCcCCcc---
Q 035878          400 -GELRDLRSLSLSQNNLNGT----IPFQIGNLVGLQDLLDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGE---  467 (496)
Q Consensus       400 -~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~LL~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---  467 (496)
                       ...++|++|+|++|.+++.    ++..+..+++|++| +|++|++++.    ++..+...++|++|+|++|.++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L-~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL-SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE-ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE-eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             2468899999999999753    44455778999999 9999999863    466778889999999999999864   


Q ss_pred             -cchhhhcCCCCCEEeCcCCCCcc
Q 035878          468 -IPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       468 -~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                       ++..+...++|++|||++|+|++
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence             44556678999999999999864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.43  E-value=2.2e-11  Score=122.15  Aligned_cols=327  Identities=9%  Similarity=0.066  Sum_probs=192.7

Q ss_pred             CCCCC-CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCC---CcccCCccccCCCCCceEecccCcCCcccCccCCCC
Q 035878          136 MTGLL-GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNF---LSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTL  211 (496)
Q Consensus       136 l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (496)
                      |.++. .|+.+.+..+ ++.+-..+|.+|.+|+.+.++.|.   ++..-..+|..+.+|+.+.+..+ ++......|..+
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            56664 5888888754 666667788999999999987763   55445567888888888877654 443455667788


Q ss_pred             CCCCEEECCCCCCccccc-cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEc
Q 035878          212 SKLTDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL  290 (496)
Q Consensus       212 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  290 (496)
                      .+|+.+.+..+ +..++. .+..+..|+.+.+..+ ++..-..+|. ..+|+.+.+..+.. ......|..+.+++....
T Consensus       137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEE
T ss_pred             cccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecc
Confidence            88888888543 333332 2333455555555433 1111112222 23455544433211 112233444444444433


Q ss_pred             ccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc
Q 035878          291 SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP  370 (496)
Q Consensus       291 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  370 (496)
                      ........ ...+.          ..+.........+.....+..+.+... ++..-...|.++..|+.+.+.++..+ .
T Consensus       213 ~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I  279 (394)
T 4gt6_A          213 DSESYPAI-DNVLY----------EKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-I  279 (394)
T ss_dssp             CCSSSCBS-SSCEE----------EECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-E
T ss_pred             cccccccc-cceee----------cccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-e
Confidence            32222110 00000          000000000011223344555555432 33234557889999999999876543 5


Q ss_pred             cchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcC
Q 035878          371 IPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEK  450 (496)
Q Consensus       371 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~  450 (496)
                      ....|..++.|+.+.+. +.++.....+|.+|.+|+.+++..+ ++..-...|.+|.+|+.+ .+..+ ++..-..+|.+
T Consensus       280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i-~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          280 GTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI-AIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE-EECTT-CCBCCGGGGTT
T ss_pred             cCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE-EECcc-cCEEhHhHhhC
Confidence            55678889999999997 4455455678999999999999865 654556789999999999 99755 66445678999


Q ss_pred             CCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCC
Q 035878          451 LTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL  488 (496)
Q Consensus       451 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  488 (496)
                      |++|+.+++.++...   -..+..+..|+.+.+..|.+
T Consensus       356 C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          356 CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            999999999988653   25677888999998887765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=7.4e-12  Score=123.29  Aligned_cols=106  Identities=24%  Similarity=0.267  Sum_probs=88.6

Q ss_pred             CEEeccCC-cCccccchhhcCCCCCCEEEccC-CcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878          358 STLSLNGN-DISGPIPEEIGALLNLDSLDLSM-NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL  435 (496)
Q Consensus       358 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L  435 (496)
                      ..++++++ +++ .+|. +..+++|++|+|++ |++++..+..|.++++|++|+|++|+|++..|..|.++++|++| +|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL-NL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE-EC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE-eC
Confidence            35688887 887 5777 88888999999986 99987777888899999999999999998888888999999998 99


Q ss_pred             cCCcCCccchhhhcCCCCCCEEEcccCcCCcc
Q 035878          436 SYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       436 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  467 (496)
                      ++|+|++..+..+..++ |++|+|.+|++...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999866666666665 99999999988743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.25  E-value=2.2e-09  Score=106.88  Aligned_cols=287  Identities=9%  Similarity=0.044  Sum_probs=134.7

Q ss_pred             CCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCE
Q 035878          137 TGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTD  216 (496)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (496)
                      ....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++.....+|..+ +|+.
T Consensus        43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~  117 (379)
T 4h09_A           43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDD  117 (379)
T ss_dssp             GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSE
T ss_pred             ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccc
Confidence            3445566666653 344455566777777777777543 443444555555 5666655433 332333344443 6777


Q ss_pred             EECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCc------------cccccCCCCC
Q 035878          217 LHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD------------LEQDFGIYPN  284 (496)
Q Consensus       217 L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~  284 (496)
                      +++..+ ++.+....+...+++.+.+..+ ++..-...+..+..++.+.+..+.....            ....+.....
T Consensus       118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT  195 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred             ccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence            777543 3334444444445555544332 2222334456666666666554432211            1112223333


Q ss_pred             ccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccC
Q 035878          285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG  364 (496)
Q Consensus       285 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  364 (496)
                      +..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus       196 ~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~  272 (379)
T 4h09_A          196 GTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA  272 (379)
T ss_dssp             CSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred             ccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence            4433332221 1122233444555555555432 22233344455555555555443 3323333455555555555543


Q ss_pred             CcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCcccccccccc
Q 035878          365 NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS  436 (496)
Q Consensus       365 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls  436 (496)
                      + ++......|..+.+|+.+.+.++.++..-..+|.+|.+|+.+.+..+ ++..-...|.+|.+|+.+ .+.
T Consensus       273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i-~ip  341 (379)
T 4h09_A          273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI-SYP  341 (379)
T ss_dssp             C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC-CCC
T ss_pred             c-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE-EEC
Confidence            2 22223334455555555555555554333445555555555555432 332223345555555555 443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=2.4e-11  Score=119.59  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             eEEccCC-cccccCCCCCCCCCCCCCCCCCCCCcEEEccC-CcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCC
Q 035878          111 ELDVSRN-NMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQD-NMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLS  188 (496)
Q Consensus       111 ~L~Ls~n-~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  188 (496)
                      .++.+++ .++ .||.          +..+++|++|+|++ |.+++..+..|+++++|++|+|++|++++..|..|.+++
T Consensus        12 ~v~~~~~n~l~-~ip~----------l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH----------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCT-TTTT----------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCC-ccCC----------CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            4566666 666 4654          24556677777774 777766666677777777777777777766666677777


Q ss_pred             CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCcc
Q 035878          189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSG  226 (496)
Q Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (496)
                      +|++|+|++|++++..+..+..++ |++|++.+|.+..
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            777777777777654444454444 7777777776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.21  E-value=1.5e-09  Score=108.08  Aligned_cols=306  Identities=10%  Similarity=0.049  Sum_probs=206.3

Q ss_pred             CCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCc
Q 035878          159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLI  238 (496)
Q Consensus       159 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~  238 (496)
                      ++....+|+.+.+... ++..-..+|.++.+|+.+.+..+ ++.....+|.++ +|+.+.+.. .++.++...+...+|+
T Consensus        41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~  116 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLD  116 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCS
T ss_pred             ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcc
Confidence            4556678999999754 66556678999999999999754 665556778777 688887754 4666777777777899


Q ss_pred             EEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccc------------cCCcCcCCC
Q 035878          239 NFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG------------EVSPKWGKC  306 (496)
Q Consensus       239 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~------------~~~~~~~~~  306 (496)
                      .+.+..+- +..-...+.++ +++.+.+..+ ++......|..+.+++.+.+..+....            .....+..+
T Consensus       117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            99887652 22223344444 5666665543 333344567777888887776543221            111233445


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEc
Q 035878          307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL  386 (496)
Q Consensus       307 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  386 (496)
                      ..+..+.+.... .......+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++......|..+.+|+.+.+
T Consensus       194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence            566666654432 2234456677788888888665 33344556788899999998776 55455567788888999988


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCc
Q 035878          387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSG  466 (496)
Q Consensus       387 s~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  466 (496)
                      ..+ +......+|.++.+|+.+.+.++.++..-...|.+|.+|+.+ ++..+ ++..-..+|.+|++|+.+.+..+ ++.
T Consensus       271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i-~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~  346 (379)
T 4h09_A          271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV-TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL  346 (379)
T ss_dssp             CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE-ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred             ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE-EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence            654 443445678888999999998888875556778889999988 88754 55344567889999999988765 654


Q ss_pred             ccchhhhcCCCC
Q 035878          467 EIPASLSSMLSL  478 (496)
Q Consensus       467 ~~p~~l~~l~~L  478 (496)
                      .-..+|.++..+
T Consensus       347 I~~~aF~~c~~~  358 (379)
T 4h09_A          347 IESGAFEGSSIT  358 (379)
T ss_dssp             ECTTTTTTSSCC
T ss_pred             EchhHhhCCCCC
Confidence            445677776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=1.1e-10  Score=114.95  Aligned_cols=84  Identities=21%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             CCCCCCEEeccCccCCccCChhcc---CCccccccccccCCcCCcc----chhhhcCCCCCCEEEcccCcCCcccchhhh
Q 035878          401 ELRDLRSLSLSQNNLNGTIPFQIG---NLVGLQDLLDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLS  473 (496)
Q Consensus       401 ~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~LL~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  473 (496)
                      .+++|++|+|.+|.+.+..+..+.   .++.|++| +|+.|.+++.    ++..+.++++|+.|+|++|.++...-..+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L-dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM-DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE-ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE-ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            356677777766666543332222   35667777 7777777653    333445567777777777777654444444


Q ss_pred             c-CCCCCEEeCcCCC
Q 035878          474 S-MLSLVAVNLSYNN  487 (496)
Q Consensus       474 ~-l~~L~~L~ls~N~  487 (496)
                      . +  ...+++++++
T Consensus       329 ~al--g~~~~~~~~~  341 (362)
T 2ra8_A          329 KSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHC--CSEEECCSBC
T ss_pred             HHc--CCEEEecCCc
Confidence            3 2  3556777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.98  E-value=5.1e-10  Score=110.26  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=97.8

Q ss_pred             cchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhh--CCCCCCEEeccC--ccCCcc----
Q 035878          347 IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIG--ELRDLRSLSLSQ--NNLNGT----  418 (496)
Q Consensus       347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~~~~L~~L~Ls~--n~l~~~----  418 (496)
                      +...+..+|+|+.|++++|.-. .++. + .+++|++|++..|.+.......+.  .+++|++|+|+.  |...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            4455677888888888877311 2232 3 377899999988887654444444  688899998863  222111    


Q ss_pred             -CChhc--cCCccccccccccCCcCCccchhhhc---CCCCCCEEEcccCcCCcc----cchhhhcCCCCCEEeCcCCCC
Q 035878          419 -IPFQI--GNLVGLQDLLDLSYNSLTGEIPAQLE---KLTSLQSMNLSHNNLSGE----IPASLSSMLSLVAVNLSYNNL  488 (496)
Q Consensus       419 -~p~~~--~~l~~L~~LL~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l  488 (496)
                       +...+  ..+++|+.| +|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.+
T Consensus       241 ~l~~~l~~~~~p~Lr~L-~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWL-GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GTGGGSCTTTCTTCCEE-EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHhcCCCCCcCEE-eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence             11122  357899999 9999999865554444   578999999999999875    344556789999999999988


Q ss_pred             cc
Q 035878          489 EG  490 (496)
Q Consensus       489 ~g  490 (496)
                      +.
T Consensus       320 ~d  321 (362)
T 2ra8_A          320 SD  321 (362)
T ss_dssp             CH
T ss_pred             CH
Confidence            64

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.80  E-value=3.4e-11  Score=112.80  Aligned_cols=64  Identities=31%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             CCCCCCEEEccCCCCcc--cCCccccCCCCCceEecccCcCCcc-cCccCCCCCCCCEEECCCCCCcc
Q 035878          162 NCKLLTLLALDGNFLSG--PIPSSLGNLSDLAVLAVASNQLSGE-IPANIGTLSKLTDLHLFINKLSG  226 (496)
Q Consensus       162 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~  226 (496)
                      ++++|++|+|++|.+++  .+|..+..+++|++|+|++|++++. ....+..+ +|++|++++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            45666666666666665  3344555566666666666666543 01112222 56666666655543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=5.4e-09  Score=92.89  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             cchhhcCCCCCCEEeccCC-cCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCc
Q 035878          347 IPAQIGNLTELSTLSLNGN-DISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNG  417 (496)
Q Consensus       347 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~  417 (496)
                      +...+...++|++|+|++| .+...    +...+...++|++|+|++|++...    +...+...++|++|+|++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445666777788888777 77532    233444556777777777776532    22334445566666666666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=9.8e-09  Score=91.22  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             ccCCCCCCCEEEccCC-cCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC--
Q 035878          326 EIGSLSQLVVLDLSSN-QLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP--  394 (496)
Q Consensus       326 ~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~--  394 (496)
                      .+...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4455666777777766 66532    333445566677777777766532    233344456677777777766543  


Q ss_pred             --ChhhhhCCCCCCEEec--cCccCC
Q 035878          395 --IPKQIGELRDLRSLSL--SQNNLN  416 (496)
Q Consensus       395 --~~~~l~~~~~L~~L~L--s~n~l~  416 (496)
                        +...+...++|++|+|  ++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCC
Confidence              2333444455555555  445544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=1.8e-08  Score=94.20  Aligned_cols=79  Identities=28%  Similarity=0.363  Sum_probs=47.8

Q ss_pred             CCCCCCEEeccCccCCc--cCChhccCCccccccccccCCcCCccchhhhcCCC--CCCEEEcccCcCCcccc-------
Q 035878          401 ELRDLRSLSLSQNNLNG--TIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT--SLQSMNLSHNNLSGEIP-------  469 (496)
Q Consensus       401 ~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p-------  469 (496)
                      ++++|++|+|++|++++  .+|..+..+++|+.| +|++|++++.  ..+..++  +|++|+|++|++++.+|       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L-~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL-NLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEE-ECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEE-ECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45556666666666655  334445556666666 6666666643  2233333  78888888888876554       


Q ss_pred             hhhhcCCCCCEEe
Q 035878          470 ASLSSMLSLVAVN  482 (496)
Q Consensus       470 ~~l~~l~~L~~L~  482 (496)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2466778888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=2e-06  Score=74.75  Aligned_cols=34  Identities=12%  Similarity=0.066  Sum_probs=15.8

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 035878          308 KLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN  341 (496)
Q Consensus       308 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  341 (496)
                      .|+.||++++.++...-..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4455555555444433333444444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=2.4e-06  Score=74.23  Aligned_cols=84  Identities=13%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             CCCCEEEccCCcCccccchhhcCCCCCCEEeccCCc-CccccchhhcCC----CCCCEEEccCCc-CCCCChhhhhCCCC
Q 035878          331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGND-ISGPIPEEIGAL----LNLDSLDLSMNR-LSGPIPKQIGELRD  404 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~~~~  404 (496)
                      .+|+.||++++.++..--..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. +++.--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777777665544556667777777777763 554444445443    357777777764 55444445566777


Q ss_pred             CCEEeccCcc
Q 035878          405 LRSLSLSQNN  414 (496)
Q Consensus       405 L~~L~Ls~n~  414 (496)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.54  E-value=7.3e-05  Score=66.07  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=43.0

Q ss_pred             hhhcCCCCCCEEeccCC-cCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCc
Q 035878          349 AQIGNLTELSTLSLNGN-DISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNG  417 (496)
Q Consensus       349 ~~l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~  417 (496)
                      ..+.+-+.|++|+|++| ++...    +.+.+..-+.|+.|+|++|++.+.    +.+.+..-+.|++|+|++|.|.+
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            34455677888888775 66432    334455566777777777777632    33444455677777777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.34  E-value=0.00014  Score=64.22  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             cCCCCCCCEEEccCC-cCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCCC--
Q 035878          327 IGSLSQLVVLDLSSN-QLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGPI--  395 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~--  395 (496)
                      +.+-+.|++|+|++| .+...    +.+.+..-..|+.|+|++|++...    +...+..-+.|++|+|+.|.|.+.-  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345567777777774 66532    344555666777777777777643    2333445567777777777776432  


Q ss_pred             --hhhhhCCCCCCEEeccCc
Q 035878          396 --PKQIGELRDLRSLSLSQN  413 (496)
Q Consensus       396 --~~~l~~~~~L~~L~Ls~n  413 (496)
                        -+.+..-+.|++|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence              223444455666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.73  E-value=0.0019  Score=53.15  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             CEEeccCccCC-ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          406 RSLSLSQNNLN-GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       406 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      ..++.+++.++ ..+|..+.  .++++| +|++|+|+..-+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L-~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTEL-VLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEE-ECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEE-ECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777775 35554332  346666 77777777555566777777777777777764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.43  E-value=0.0052  Score=50.41  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             EEEccCCCCc-ccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCC
Q 035878          168 LLALDGNFLS-GPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKL  224 (496)
Q Consensus       168 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (496)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4444444443 23343222  2455555555555544444445555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-24
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 99.8 bits (247), Expect = 6e-24
 Identities = 74/349 (21%), Positives = 118/349 (33%), Gaps = 49/349 (14%)

Query: 29  TETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCRWSGIVCNDAGS---VTEINLA 85
            + +ALL+ K+ L N + + SW         +T      W G++C+       V  ++L+
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSW-------LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 86  NTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNF 145
              L         SS  NL   +   +    N     +   + P            L   
Sbjct: 59  GLNLPKPYP--IPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQ-----LHYL 106

Query: 146 LLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIP 205
            +    +SG IP+ +   K L  L    N LSG +P S+ +L +L  +    N++SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 206 ANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVR 265
            + G+ SKL                       + F     +      + L       +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPA 325
             +           G+  NL  +DL  NR+ G                         +P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT------------------------LPQ 262

Query: 326 EIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDI--SGPIP 372
            +  L  L  L++S N L GEIP Q GNL      +   N      P+P
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.3 bits (199), Expect = 1e-17
 Identities = 65/261 (24%), Positives = 110/261 (42%), Gaps = 30/261 (11%)

Query: 166 LTLLALDGNFLSG--PIPSSLGNLSDLAVLAVASN-QLSGEIPANIGTLSKLTDLHLFIN 222
           +  L L G  L    PIPSSL NL  L  L +     L G IP  I  L++L  L++   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 223 KLSGLPPQ-VCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGI 281
            +SG  P  + +   L+    S+N  SG +P S+ S  +L  +  + N ++G +   +G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 282 YPNLTY-IDLSYNRLQGEVSPKWGKCQKLTLLGLAG----------------------NS 318
           +  L   + +S NRL G++ P +       +                            +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 319 IGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGAL 378
                  ++G    L  LDL +N++ G +P  +  L  L +L+++ N++ G IP + G L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 379 LNLDSLDLSMNRL--SGPIPK 397
              D    + N+     P+P 
Sbjct: 291 QRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.0 bits (198), Expect = 2e-17
 Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 8/264 (3%)

Query: 235 GKLINFTASFNHFSG--PIPTSLKSCSSLYRVRLESNE-LTGDLEQDFGIYPNLTYIDLS 291
            ++ N   S  +     PIP+SL +   L  + +     L G +         L Y+ ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 292 YNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQI 351
           +  + G +     + + L  L  + N++ G +P  I SL  LV +    N++SG IP   
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 352 GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS 411
           G+ ++L T      +          A LNL  +DLS N L G      G  ++ + + L+
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 412 QNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS 471
           +N+L   +     +     + LDL  N + G +P  L +L  L S+N+S NNL GEIP  
Sbjct: 230 KNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 472 LSSMLSLVAVNLSYNNL--EGPLP 493
             ++        + N      PLP
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 2e-14
 Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 9/269 (3%)

Query: 182 SSLGNLSDLAVLAVASNQLSG--EIPANIGTLSKLTDLHL--FINKLSGLPPQVCKGGKL 237
            +      +  L ++   L     IP+++  L  L  L++    N +  +PP + K  +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 238 INFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQG 297
                +  + SG IP  L    +L  +    N L+G L       PNL  I    NR+ G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 298 EVSPKWGKCQKLTL-LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTE 356
            +   +G   KL   + ++ N + GKIP    +L+   V    S  +     + +    +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL--SRNMLEGDASVLFGSDK 221

Query: 357 LSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
            +       +       ++G   NL+ LDL  NR+ G +P+ + +L+ L SL++S NNL 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIP 445
           G IP Q GNL    D+   + N      P
Sbjct: 282 GEIP-QGGNLQRF-DVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 8e-12
 Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 10/245 (4%)

Query: 259 SSLYRVR---LESNELTGDLE--QDFGIYPNLTYIDLSYN-RLQGEVSPKWGKCQKLTLL 312
           +  YRV    L    L             P L ++ +     L G + P   K  +L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIP 372
            +   ++ G IP  +  +  LV LD S N LSG +P  I +L  L  ++ +GN ISG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 373 EEIGALLNLDSLDLSM-NRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD 431
           +  G+   L +      NRL+G IP     L          +         +        
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD---LSRNMLEGDASVLFGSDKNT 223

Query: 432 LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 491
                  +       ++    +L  ++L +N + G +P  L+ +  L ++N+S+NNL G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 492 LPDGS 496
           +P G 
Sbjct: 284 IPQGG 288

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.8 bits (237), Expect = 4e-22
 Identities = 76/394 (19%), Positives = 135/394 (34%), Gaps = 59/394 (14%)

Query: 127 LFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGN 186
           +F D        L      +L    ++  + +   +   +T L  D   +       +  
Sbjct: 15  IFTDT------ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEY 64

Query: 187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL-------------FINKLSGLPPQVCK 233
           L++L  +  ++NQL+   P  +  L+KL D+ +               N           
Sbjct: 65  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 234 GGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYN 293
                    +  +       ++   S+L  +        G+   D     NLT ++    
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 294 R-LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIG 352
              +        K   L  L    N I    P  I +   L  L L+ NQL       + 
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLA 238

Query: 353 NLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIP---------------- 396
           +LT L+ L L  N IS   P  +  L  L  L L  N++S   P                
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 397 ----KQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLT 452
                 I  L++L  L+L  NN++   P    +L  LQ L   + N ++    + L  LT
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRL-FFANNKVSD--VSSLANLT 351

Query: 453 SLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN 486
           ++  ++  HN +S   P  L+++  +  + L+  
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 4e-19
 Identities = 61/363 (16%), Positives = 127/363 (34%), Gaps = 45/363 (12%)

Query: 162 NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI 221
                    L    ++  +  +  +L  +  L      +       +  L+ LT ++   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 222 NKLSGLPP-----QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLE 276
           N+L+ + P     ++       N  A     +     +  +  +     ++  +   +L 
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 277 QDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGL-------AGNSIGGKIPAEIGS 329
           +       ++ I         +      +   L  L           +S      + +  
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 330 LSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389
           L+ L  L  ++NQ+S   P  I   T L  LSLNGN +       + +L NL  LDL+ N
Sbjct: 196 LTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 390 RLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD------------------ 431
           ++S   P  +  L  L  L L  N ++   P      +   +                  
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 432 -LLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
             L L +N+++   P  +  LT LQ +  ++N +S    +SL+++ ++  ++  +N +  
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 491 PLP 493
             P
Sbjct: 366 LTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 93  LHDLDFSSFPNLLRF-DVYELDVSRNNMTGGIDPRLFP-----DDKNQPMTGLLGLKNFL 146
           L+         L    ++ +LD++ N ++                    ++ +  L    
Sbjct: 226 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 285

Query: 147 LQDNMLS----GRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSG 202
              N+            I N K LT L L  N +S   P  + +L+ L  L  A+N++S 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPP 229
              +++  L+ +  L    N++S L P
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 46/244 (18%)

Query: 289 DLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIP 348
            L    +   VS       ++T L      I  K    +  L+ L  ++ S+NQL+   P
Sbjct: 28  VLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP 83

Query: 349 AQIGNLTELSTLSLNGNDISGPIPE----------------------------------- 373
             + NLT+L  + +N N I+   P                                    
Sbjct: 84  --LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 374 -EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL 432
             I  +  L  L        G     +  L +L +L     + N      +   +   + 
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 492
           L  + N ++   P  +   T+L  ++L+ N L      +L+S+ +L  ++L+ N +    
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 493 PDGS 496
           P   
Sbjct: 258 PLSG 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.9 bits (232), Expect = 5e-22
 Identities = 55/277 (19%), Positives = 99/277 (35%), Gaps = 12/277 (4%)

Query: 142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLS 201
                LQ+N ++     +  N K L  L L  N +S   P +   L  L  L ++ NQL 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 202 GEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL 261
                   TL +L      I K+            ++    +    SG    + +    L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG 321
             +R+    +T       G+ P+LT + L  N++    +        L  LGL+ NSI  
Sbjct: 153 SYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG------PIPEEI 375
                + +   L  L L++N+L  ++P  + +   +  + L+ N+IS         P   
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 376 GALLNLDSLDLSMNRLS--GPIPKQIGELRDLRSLSL 410
               +   + L  N +      P     +    ++ L
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.9 bits (224), Expect = 6e-21
 Identities = 58/288 (20%), Positives = 103/288 (35%), Gaps = 13/288 (4%)

Query: 155 RIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL 214
           ++P+++       LL L  N ++        NL +L  L + +N++S   P     L KL
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 215 TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGD 274
             L+L  N+L  LP ++ K  + +    +          +  +   +  +     + +G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 275 LEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLV 334
               F     L+YI ++   +    +   G    LT L L GN I     A +  L+ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 335 VLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG- 393
            L LS N +S      + N   L  L LN N +   +P  +     +  + L  N +S  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 394 -----PIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLS 436
                  P    +      +SL  N +      Q      +     + 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.2 bits (212), Expect = 2e-19
 Identities = 59/290 (20%), Positives = 104/290 (35%), Gaps = 17/290 (5%)

Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSL 261
           ++P ++        L L  NK++ +     K    L       N  S   P +      L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 262 YRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGG 321
            R+ L  N+L    E+       L   +    +++  V     +   + L         G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSG 140

Query: 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
                   + +L  + ++   ++  IP   G    L+ L L+GN I+      +  L NL
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT 441
             L LS N +S      +     LR L L+ N L   +P  + +   +Q +  L  N+++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV-YLHNNNIS 255

Query: 442 G------EIPAQLEKLTSLQSMNLSHNNLS-GEI-PASLSSMLSLVAVNL 483
                    P    K  S   ++L  N +   EI P++   +    AV L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 2e-16
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 5/209 (2%)

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339
            + P+   +DL  N++       +   + L  L L  N I    P     L +L  L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQI 399
            NQL          L EL         +   +   +  ++ ++ L  +  + SG      
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAF 146

Query: 400 GELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL 459
             ++ L  + ++  N+         +L      L L  N +T    A L+ L +L  + L
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLT----ELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 460 SHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
           S N++S     SL++   L  ++L+ N L
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS 439
           +L  +  S   L   +PK +    D   L L  N +         NL  L   L L  N 
Sbjct: 11  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLH-TLILINNK 66

Query: 440 LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
           ++   P     L  L+ + LS N L         ++  L         +
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
           LDL  N +T       + L +L ++ L +N +S   P + + ++ L  + LS N L+ 
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (214), Expect = 1e-19
 Identities = 51/266 (19%), Positives = 83/266 (31%), Gaps = 9/266 (3%)

Query: 203 EIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGK--LINFTASFNHFSGPIPTSLKSCSS 260
            +P  I        + L  N++S +P    +  +   I +  S                 
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 261 LYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG 320
                 ++ +L       F     L  + L    LQ      +     L  L L  N++ 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 321 GKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN 380
                    L  L  L L  N++S         L  L  L L+ N ++   P     L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL 440
           L +L L  N LS    + +  LR L+ L L+ N            L         S + +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEV 260

Query: 441 TGEIPAQLEKLTSLQSMNLSHNNLSG 466
              +P   ++L       L+ N+L G
Sbjct: 261 PCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 63  PSPCRWSGIVCNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGG 122
           P  C      C +   VT  +    GL          + P  +      + +  N ++  
Sbjct: 3   PGACV-----CYNEPKVT-TSCPQQGL---------QAVPVGIPAASQRIFLHGNRISH- 46

Query: 123 IDPRLFPDDKN-----------------QPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKL 165
           +    F   +N                       L  +  L  +  L    P        
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
           L  L LD   L    P     L+ L  L +  N L          L  LT L L  N++S
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 226 GLPPQVCKG-GKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPN 284
            +P +  +G   L       N  +   P + +    L  + L +N L+    +       
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 285 LTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLS 344
           L Y+ L+ N    +   +      L     + + +   +P     L+   +  L++N L 
Sbjct: 227 LQYLRLNDNPWVCDCRARPLW-AWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQ 282

Query: 345 G 345
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 55/245 (22%), Positives = 82/245 (33%), Gaps = 5/245 (2%)

Query: 251 IPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLT-YIDLSYNRLQGEVSPKWGKCQKL 309
           +P  + +  +  R+ L  N ++      F    NLT     S    + + +   G     
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 310 TLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG 369
            L       +    PA    L +L  L L    L    P     L  L  L L  N +  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 370 PIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGL 429
              +    L NL  L L  NR+S    +    L  L  L L QN +    P    +L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 430 QDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
             L  L  N+L+      L  L +LQ + L+ N    +   +      L     S + + 
Sbjct: 204 MTL-YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVP 261

Query: 490 GPLPD 494
             LP 
Sbjct: 262 CSLPQ 266

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 6/207 (2%)

Query: 159 EIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLH 218
           E+        +  D   L+  +P  L    D  +L ++ N L     A +   ++LT L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 219 LFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQD 278
           L  ++      QV     ++      ++    +P   ++  +L  + +  N LT      
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 279 FGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL 338
                 L  + L  N L+           KL  L LA N++       +  L  L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 339 SSNQLSGEIPAQIGNLTELSTLSLNGN 365
             N L   IP        L    L+GN
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 323 IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLD 382
           +P ++       +L LS N L     A +   T L+ L+L+  +++    +    +L   
Sbjct: 25  LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 383 SLDLSMNRLSGP--------------------IPKQIGELRDLRSLSLSQNNLNGTIPFQ 422
            L  +  +                        +P               + N   T+P  
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 423 IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVN 482
           +       + L L+ N+LT      L  L +L ++ L  N+L   IP        L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 483 LSYNNL 488
           L  N  
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 50/211 (23%), Positives = 67/211 (31%), Gaps = 8/211 (3%)

Query: 254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLG 313
            +   +S   V  +   LT        +  + T + LS N L            +LT L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT---ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 314 LAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE 373
           L    +        G+L  L  LDLS NQL                  ++ N ++     
Sbjct: 62  LDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLG 118

Query: 374 EIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL 433
            +  L  L  L L  N L    P  +     L  LSL+ NNL       +  L  L   L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD-TL 177

Query: 434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNL 464
            L  NSL   IP        L    L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 8/210 (3%)

Query: 183 SLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTA 242
            +  ++    +      L+  +P ++      T LHL  N L                T 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATL--MPYTRLTQ 59

Query: 243 -SFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSP 301
            + +           +   L  + L  N+L         +    T +D+S+NRL      
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRLTSLPLG 118

Query: 302 KWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS 361
                 +L  L L GN +    P  +    +L  L L++N L+      +  L  L TL 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRL 391
           L  N +   IP+       L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 6/209 (2%)

Query: 208 IGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE 267
           +  ++   +++     L+ LPP + K   +++   S N        +L   + L ++ L+
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLD 63

Query: 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI 327
             E     +        +       +     +         LT+L ++ N +       +
Sbjct: 64  RAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 328 GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387
             L +L  L L  N+L    P  +    +L  LSL  N+++      +  L NLD+L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 388 MNRLSGPIPKQIGELRDLRSLSLSQNNLN 416
            N L   IPK       L    L  N   
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 27/227 (11%)

Query: 73  CNDAGSVTEINLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDK 132
            +   S  E+N     L         ++ P  L  D   L +S N +             
Sbjct: 6   VSKVASHLEVNCDKRNL---------TALPPDLPKDTTILHLSENLLY-TFSLATLMPYT 55

Query: 133 NQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP--IPSSLGNLSDL 190
                         L    L      ++     L +L       +    +P     L  L
Sbjct: 56  R-------------LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102

Query: 191 AVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINF-TASFNHFSG 249
            VL V+ N+L+      +  L +L +L+L  N+L  LPP +      +   + + N+ + 
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 250 PIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQ 296
                L    +L  + L+ N L   + + F     L +  L  N   
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (143), Expect = 3e-10
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 22/113 (19%)

Query: 379 LNLDSLDLSMNRLS-GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY 437
           L++ SLD+    LS     + +  L+  + + L    L       I +            
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA----------- 50

Query: 438 NSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
                     L    +L  +NL  N L       +   L   +  +   +L+ 
Sbjct: 51  ----------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 333 LVVLDLSSNQLSGEIPAQI-GNLTELSTLSLNGNDISGPIPEEIGALL----NLDSLDLS 387
           +  LD+   +LS    A++   L +   + L+   ++    ++I + L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 388 MNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQ 422
            N L       + +     S  + + +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 5e-08
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 306 CQKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGEIPAQIG-----NLTE 356
              L +L LA   +       + A + +   L  LDLS+N L      Q+          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 357 LSTLSLNGNDISGPIPEEIGALL 379
           L  L L     S  + + + AL 
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 6e-08
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 284 NLTYIDLSYNRLQGEVSPK-WGKCQKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDL 338
           ++  +D+    L      +     Q+  ++ L    +       I + +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 339 SSNQLSGEIPAQIGNLTELSTLSLNGNDISG 369
            SN+L       +    +  +  +    +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 7e-08
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 331 SQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGPIPEEIGALL-----NL 381
           S L VL L+   +S      + A +     L  L L+ N +      ++   +      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 382 DSLDLSMNRLSGPIPKQIGELR----DLRSLS 409
           + L L     S  +  ++  L      LR +S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 9e-08
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 309 LTLLGLAGNSIGGKIPAEI-GSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLN 363
           +  L +    +     AE+   L Q  V+ L    L+      I + +     L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 364 GNDISGPIPEEIGALLNLDSLDLSMNRLSG 393
            N++       +   L   S  +    L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 3e-07
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 405 LRSLSLSQNNLNGTIPFQIGN-LVGLQDL--LDLSYNSLTGEIPAQL-----EKLTSLQS 456
           LR L L+  +++ +    +   L+    L  LDLS N L      QL     +    L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 457 MNLSHNNLSGEIPASLSSML 476
           + L     S E+   L ++ 
Sbjct: 431 LVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 282 YPNLTYIDLSYNRLQGE----VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGS-----LSQ 332
              L  + L+   +       ++        L  L L+ N +G     ++          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 333 LVVLDLSSNQLSGEIPAQIGNLTE----LSTLS 361
           L  L L     S E+  ++  L +    L  +S
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 348 PAQIGNLTELSTLSLNGNDISGPIPEEIGALL----NLDSLDLSMNRLSGPIPKQIGE-L 402
                  + L  L L   D+S      + A L    +L  LDLS N L      Q+ E +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 403 RD----LRSLSLSQNNLNGTIPFQIGNL 426
           R     L  L L     +  +  ++  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 4e-06
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 433 LDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGEIPASLSSML-----SLVAVNL 483
           L L+   ++      + A L    SL+ ++LS+N L       L   +      L  + L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 484 SYNNLEGPLPD 494
                   + D
Sbjct: 434 YDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 5e-06
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 380 NLDSLDLSMNRLSGPIPKQIGE----LRDLRSLSLSQNNLNGTIPFQIGNLVGLQD---- 431
            L  L L+   +S      +         LR L LS N L      Q+   V        
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 432 LLDLSYNSLTGEIPAQLEKL 451
            L L     + E+  +L+ L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 356 ELSTLSLNGNDIS-GPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGE----LRDLRSLSL 410
           ++ +L +   ++S     E +  L     + L    L+    K I         L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 411 SQNNLNGTIPFQIGNLVGLQDL----LDLSYN 438
             N L       +   +         L L   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 9/81 (11%)

Query: 142 LKNFLLQDNMLSGR----IPEEIGNCKLLTLLALDGNFLSGPIPSSLG-----NLSDLAV 192
           L+   L D  +S      +   +     L  L L  N L       L          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 193 LAVASNQLSGEIPANIGTLSK 213
           L +     S E+   +  L K
Sbjct: 431 LVLYDIYWSEEMEDRLQALEK 451

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 336 LDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG-P 394
           LDL+   L  ++  ++ +   ++      + +  P+ E   +   +  +DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 62

Query: 395 IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEI-PAQLEKLTS 453
           +   + +   L++LSL    L+  I   +     L  L     +  +       L   + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 454 LQSMNLSHNN 463
           L  +NLS   
Sbjct: 123 LDELNLSWCF 132

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG 345
             +DL+   L  +V+ +    Q +       + +   +  E  S  ++  +DLS++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60

Query: 346 E-IPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMN 389
             +   +   ++L  LSL G  +S PI   +    NL  L+LS  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 42/268 (15%), Positives = 81/268 (30%), Gaps = 39/268 (14%)

Query: 193 LAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSG-PI 251
           L +    L  ++   +     +       + +     +     ++ +   S +      +
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 252 PTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL--------------------- 290
              L  CS L  + LE   L+  +        NL  ++L                     
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 291 -----------SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339
                      +   +Q  V+       +L L G   N     +   +     LV LDLS
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 340 SNQL-SGEIPAQIGNLTELSTLSLNG-NDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397
            + +   +   +   L  L  LSL+   DI      E+G +  L +L +      G +  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGN 425
               L  L+   ++ ++        IGN
Sbjct: 244 LKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 406 RSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS 465
           ++L L+  NL+  +    G L+    +      S   +  A+      +Q M+LS++ + 
Sbjct: 3   QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 466 GE-IPASLSSMLSLVAVNLSYNNLEGPLP 493
              +   LS    L  ++L    L  P+ 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP 445
             +N  S  I         L  L++S N L   +P     L      L  S+N L  E+P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE----RLIASFNHLA-EVP 320

Query: 446 AQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSL 478
              E   +L+ +++ +N L  E P    S+  L
Sbjct: 321 ---ELPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPF 421
              N  S  I        +L+ L++S N+L   +P        L  L  S N+L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPE 321

Query: 422 QIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQ 455
              NL      L + YN L  E P   E +  L+
Sbjct: 322 LPQNLK----QLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 338 LSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPK 397
              N  S EI +       L  L+++ N +   +P        L+ L  S N L+  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLAE-VPE 321

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430
                ++L+ L +  N L    P    ++  L+
Sbjct: 322 ---LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 33/113 (29%)

Query: 269 NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIG 328
           N  + ++     + P+L  +++S N+L                          ++PA   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-------------------------ELPALPP 304

Query: 329 SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
            L     L  S N L+ E+P    NL +   L +  N +    P+   ++ +L
Sbjct: 305 RLE---RLIASFNHLA-EVPELPQNLKQ---LHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 410 LSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
              N  +  I         L++L ++S N L  E+PA   +L  L     S N+L+ E+P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEEL-NVSNNKLI-ELPALPPRLERL---IASFNHLA-EVP 320

Query: 470 ASLSSMLSLVAVNLSYNNLEGPLPD 494
               ++  L   ++ YN L    PD
Sbjct: 321 ELPQNLKQL---HVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 147 LQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPA 206
              N  S  I         L  L +  N L   +P+    L     L  + N L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLA-EVP- 320

Query: 207 NIGTLSKLTDLHLFINKLSGLPP 229
                  L  LH+  N L   P 
Sbjct: 321 --ELPQNLKQLHVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 433 LDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 490
           L+L+   L+  +P   E    L+S+  S N+L+ E+P       SL ++ +  NNL+ 
Sbjct: 43  LELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQ---SLKSLLVDNNNLKA 92

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 359 TLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGT 418
            L L   D++  +   +  LL +  LDLS NRL    P     L  LR L + Q + N  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 419 IPFQIGNLVGLQDLLDLSYNSLTG-EIPAQLEKLTSLQSMNLSHNNLSGE--IPASLSSM 475
                   +     L L  N L        L     L  +NL  N+L  E  I   L+ M
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 476 L 476
           L
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 335 VLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGP 394
           VL L+   L+  +   +  L  ++ L L+ N +    P  + AL  L+ L  S N L   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 395 IPKQIGELRDLRSLSLSQNNLNGTIPFQ-IGNLVGLQDLLDLSYNSLTGEIPAQLEKLTS 453
                     L+ L L  N L  +   Q + +   L   L+L  NSL  E   Q      
Sbjct: 59  DGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVL-LNLQGNSLCQEEGIQERLAEM 115

Query: 454 LQSMN 458
           L S++
Sbjct: 116 LPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 384 LDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGE 443
           L L+   L+  +   + +L  +  L LS N L    P     L  L+ L  L  +    E
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56

Query: 444 IPAQLEKLTSLQSMNLSHNNL-SGEIPASLSSMLSLVAVNLSYNNLEG 490
               +  L  LQ + L +N L        L S   LV +NL  N+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 27/117 (23%)

Query: 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELST------------ 359
           L LA   +   +   +  L  +  LDLS N+L    PA +  L  L              
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 360 ----------LSLNGNDI-SGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDL 405
                     L L  N +      + + +   L  L+L  N L          L ++
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 266 LESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPA 325
           L   +LT  L         +T++DLS+NRL+              L  L  +    +   
Sbjct: 5   LAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNALENVD 59

Query: 326 EIGSLSQLVVLDLSSNQL-SGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNL 381
            + +L +L  L L +N+L        + +   L  L+L GN +          L  +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 192 VLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPI 251
           VL +A   L+  +  ++  L  +T L L  N+L  LPP +     L       +  +   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCL--EVLQASDNALEN 57

Query: 252 PTSLKSCSSLYRVRLESNELTG-DLEQDFGIYPNLTYIDLSYNRLQGE 298
              + +   L  + L +N L      Q     P L  ++L  N L  E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 23/237 (9%)

Query: 127 LFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGN 186
           +FPD        L          + ++  + +   +   +T L+  G  ++      +  
Sbjct: 12  IFPDP------ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQY 61

Query: 187 LSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNH 246
           L++L  L +  NQ+     A +  L+K+T+L L  N L  +               S   
Sbjct: 62  LNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 247 FSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKC 306
                   L +   LY            +     +        LS    Q          
Sbjct: 120 TDVTPLAGLSNLQVLYLDL-------NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 307 QKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLN 363
            KLT L    N I    P  + SL  L+ + L +NQ+S   P  + N + L  ++L 
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 17/222 (7%)

Query: 166 LTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLS 225
              +A   + ++  +  +  +L  +  L+     ++      I  +  L +L     K +
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-----TIEGVQYLNNLIGLELKDN 73

Query: 226 GLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNL 285
            +                 +       +++    S+  + L S ++T            +
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 286 TYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG 345
            Y+DL+       ++                 +        + +LS+L  L    N++S 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSI------GNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 346 EIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS 387
             P  + +L  L  + L  N IS   P  +    NL  + L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM 457
            +  L  L +L    N ++   P    +L  L ++  L  N ++   P  L   ++L  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISPL--ASLPNLIEV-HLKNNQISDVSP--LANTSNLFIV 222

Query: 458 NLSH 461
            L++
Sbjct: 223 TLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 329 SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSM 388
           +L+  + +    + ++  +     +L  ++TLS  G  ++    E +  L NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 389 NRL 391
           N++
Sbjct: 73  NQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 436 SYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLS 484
             N ++   P  L  L +L  ++L +N +S   P  L++  +L  V L+
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD 431
              +  L  L +L    N++S   P  +  L +L  + L  N ++   P    N   L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLF- 220

Query: 432 LLDLS 436
           ++ L+
Sbjct: 221 IVTLT 225

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 42/186 (22%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV-SPKWGKCQKLTLLGLA 315
            C     V      L    E    I  + T + L+ N L        +G+   L  L L 
Sbjct: 7   HCEGT-TVDCTGRGLK---EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELK 62

Query: 316 GNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEI 375
            N + G  P      S +  L L  N++          L +L TL+L  N IS  +P   
Sbjct: 63  RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122

Query: 376 GALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL 435
             L +L SL+L+ N  +            LR  SL+        P ++ ++     + DL
Sbjct: 123 EHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSKVRDV----QIKDL 177

Query: 436 SYNSLT 441
            ++   
Sbjct: 178 PHSEFK 183

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 49/338 (14%), Positives = 97/338 (28%), Gaps = 38/338 (11%)

Query: 164 KLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGE----IPANIGTLSKLTDLHL 219
           K L L A+        + + L     +  + ++ N +  E    +  NI +   L     
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDF 279
                  +  ++                   +  +L  C  L+ VRL  N      ++  
Sbjct: 67  SDIFTGRVKDEIP-------------EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 113

Query: 280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLS 339
             + +              + P+ G      L  LA N      P     +     L+  
Sbjct: 114 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 173

Query: 340 SNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLS------- 392
           S +   +       L  +     NG    G     +  L     L +   + +       
Sbjct: 174 SMKEWAKTFQSHRLLHTVKM-VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232

Query: 393 GPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDL-----LDLSYNSLTGEIPAQ 447
             +   +    +LR L L+   L+      + +     +      L L YN +  +    
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 448 L-----EKLTSLQSMNLSHNNLS--GEIPASLSSMLSL 478
           L     EK+  L  + L+ N  S   ++   +  + S 
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 303 WGKCQKLTLLGLAGNSIGGKIPAEIG------SLSQLVVLDLSSNQLSGEIPAQI----- 351
                 L  LGL    +  +  A +           L  L L  N++  +    +     
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 352 GNLTELSTLSLNGNDIS--GPIPEEIGALLNLDSLD 385
             + +L  L LNGN  S    + +EI  + +     
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 338 LSSNQLSGEIPAQIGN------LTELSTLSLNGNDISGPIPEEIGALL-----NLDSLDL 386
           L+   LS    A + +         L TL L  N+I       +  ++     +L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 387 SMNRLS--GPIPKQIGELRDLRSLS 409
           + NR S    +  +I E+   R   
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 433 LDLSYNSLTGE----IPAQLEKLTSLQSMNLSHNNLSGE----IPASLSSMLSLVAVNLS 484
             L  +++T E    + A L +  S++ + LS N +  E    +  +++S   L     S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 485 YNNL 488
               
Sbjct: 68  DIFT 71

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 42/331 (12%), Positives = 89/331 (26%), Gaps = 35/331 (10%)

Query: 140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP----IPSSLGNLSDLAVLAV 195
             LK   +        +   +     +  + L GN +       +  ++ +  DL +   
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 196 ASNQ---LSGEIPANIGTLSKLT-DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPI 251
           +      +  EIP  +  L +                       + +    S +     +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 252 PTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTL 311
                        ++        + +     P L  I    NRL+     +W K  +   
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 312 LGLAGNSIGGKIPAEIGSLSQLVVLD-------------LSSNQLSGEIPAQIGNLTELS 358
           L      +   I  E      L  L                ++  S  +   + +   L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 359 TLSLNGNDISGPIPEEIG------ALLNLDSLDLSMNRLSGPIPKQIGE-----LRDLRS 407
            L LN   +S      +         + L +L L  N +     + +       + DL  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 408 LSLSQNNLN--GTIPFQIGNLVGLQDLLDLS 436
           L L+ N  +    +  +I  +   +   +L 
Sbjct: 307 LELNGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 32/215 (14%), Positives = 60/215 (27%), Gaps = 7/215 (3%)

Query: 156 IPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT 215
           IP ++   +    L      L      +     DL  + ++ N +   I A++ +     
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 216 DLHLF---INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSL--YRVRLESNE 270
                    N L   P        L     S                      ++   N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 271 LTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSL 330
            T +     G+      + L+ N +Q   +  +   Q   L     N++           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 331 SQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGN 365
           S  V+LD+S  ++       + NL +L   S    
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 11/229 (4%)

Query: 197 SNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQV---CKGGKLINFTASFNHFSGPIPT 253
            ++++ EIP+++       +L   + KL  +           + I  + +          
Sbjct: 17  ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 254 SLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV--SPKWGKCQKLTL 311
                        ++N L     + F   PNL Y+ +S   ++            + L  
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 312 LGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPI 371
           +    N    +  + +G   + V+L L+ N +                   + N++    
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 372 PEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP 420
            +          LD+S  R+       +  L+ LR+ S    NL   +P
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 448 LEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 489
               +    +++S   +       L ++  L A +    NL+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 416 NGTIPFQI-GNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP 469
              +P  +     G   L D+S   +       LE L  L++   S  NL  ++P
Sbjct: 189 LEELPNDVFHGASGPVIL-DISRTRIHSLPSYGLENLKKLRA--RSTYNLK-KLP 239

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 6e-05
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 371 IPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQ 430
           +   +    +     L +  L       +        L+   +++  T+     N+  L 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELL 68

Query: 431 DLLDLSYNSLTG--EIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 488
            L +LS N L    ++ + ++K  +L+ +NLS N L  E        L L  + L  N+L
Sbjct: 69  SL-NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 489 EGPLPDGS 496
                D S
Sbjct: 128 SDTFRDQS 135

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 322 KIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISG--PIPEEIGALL 379
           +   ++ + +  VVL+  S+  +  +     N+ EL +L+L+ N +     +   +    
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91

Query: 380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIP 420
           NL  L+LS N L         +   L  L L  N+L+ T  
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 7/146 (4%)

Query: 337 DLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIP 396
           +L   Q+  ++   +    + S  +L+   +      ++ A      L+   +  +  + 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LR 58

Query: 397 KQIGELRDLRSLSLSQNNLNGT--IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL 454
                + +L SL+LS N L     +   +     L+ L +LS N L  E      K   L
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL-NLSGNELKSERELDKIKGLKL 117

Query: 455 QSMNLSHNNLSGEIPASLSSMLSLVA 480
           + + L  N+LS       + + ++  
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRE 143

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 53/207 (25%)

Query: 323 IPAEIG------SLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIG 376
           +P  I       + ++ +  +L    ++  +      L  +  +  N +DI       I 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQ 65

Query: 377 ALLNLDSLDLSMNRLSGP---------------------------------------IPK 397
            L N+  L L+ N+L+                                            
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 398 QIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSM 457
            I  L  L  L       N      + + +   D L L  N ++  +P  L  LT LQ++
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 458 NLSHNNLSGEIPASLSSMLSLVAVNLS 484
            LS N++S ++  +L+ + +L  + L 
Sbjct: 184 YLSKNHIS-DLR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 38/215 (17%), Positives = 66/215 (30%), Gaps = 21/215 (9%)

Query: 156 IPEEIG------NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIG 209
           +P  I                L    ++  +  +   L+ +  +   ++ +       I 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQ 65

Query: 210 TLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESN 269
            L  +T L L  NKL+ + P       L N       F         S     +     +
Sbjct: 66  YLPNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118

Query: 270 ELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGS 329
                +    G+        L     +        +  KL  L L  N I   +P  +  
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 176

Query: 330 LSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNG 364
           L++L  L LS N +S ++ A +  L  L  L L  
Sbjct: 177 LTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELST 359
           + ++    +   L L G  I   I     +L Q   +D S N++          L  L T
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 360 LSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSG-PIPKQIGELRDLRSLSLSQNNLNGT 418
           L +N N I         AL +L  L L+ N L        +  L+ L  L + +N +   
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 419 IPFQIGNLVGLQDLLDLSYNSLTGE 443
             +++  +  +  +  L +  +  +
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQKVKLK 152

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 17/213 (7%)

Query: 148 QDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPAN 207
           QD  ++    +            L    ++  +  +  +L  +  L      +   I   
Sbjct: 4   QDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-G 57

Query: 208 IGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE 267
           +  L+ LT ++   N+L+ + P       L N T   +        +  +  +       
Sbjct: 58  VEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG 110

Query: 268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEI 327
                  +     +        L  +               L  L  + N +    P  +
Sbjct: 111 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--L 168

Query: 328 GSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL 360
            +L+ L  LD+SSN++S    + +  LT L +L
Sbjct: 169 ANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.48

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-42  Score=337.81  Aligned_cols=289  Identities=31%  Similarity=0.505  Sum_probs=189.5

Q ss_pred             hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCcc--ccceeeCC---CCCEEEEEcCCCCCccc--cCCCCCCC
Q 035878           28 LTETEALLKWKETLVNQSIVQSWVIPASNSSNSTTPSPCR--WSGIVCND---AGSVTEINLANTGLAGT--LHDLDFSS  100 (496)
Q Consensus        28 ~~~~~~ll~~k~~~~~~~~l~~W~~~~~~~~~~~~~~~C~--w~gv~c~~---~~~v~~L~L~~~~l~g~--~~~~~l~~  100 (496)
                      ++||+||++||+++.|+..+++|.. +        +|||.  |.||+|+.   .+||++|+|+++++.|.  +|+ .+++
T Consensus         5 ~~e~~aLl~~k~~~~~~~~l~sW~~-~--------~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l~~   74 (313)
T d1ogqa_           5 PQDKQALLQIKKDLGNPTTLSSWLP-T--------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLAN   74 (313)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGTTCCT-T--------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGG
T ss_pred             HHHHHHHHHHHHHCCCCCcCCCCCC-C--------CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HHhc
Confidence            4899999999999988778999975 3        79994  99999985   34899999999999874  555 6677


Q ss_pred             CCCCceeccceEEccC-CcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCccc
Q 035878          101 FPNLLRFDVYELDVSR-NNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGP  179 (496)
Q Consensus       101 l~~L~~L~L~~L~Ls~-n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  179 (496)
                      +++|+     +|||++ |+++|.+|.+         |+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.
T Consensus        75 L~~L~-----~L~Ls~~N~l~g~iP~~---------i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          75 LPYLN-----FLYIGGINNLVGPIPPA---------IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             CTTCS-----EEEEEEETTEESCCCGG---------GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             Ccccc-----ccccccccccccccccc---------cccccccchhhhccccccccccccccchhhhccccccccccccc
Confidence            77666     455554 5666666655         45566666666666666666666666666666666666666666


Q ss_pred             CCccccCCCCCceEecccCcCCcccCccCCCCCCC-CEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCC
Q 035878          180 IPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKL-TDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSC  258 (496)
Q Consensus       180 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  258 (496)
                      +|..+.++++|+++++++|.+++.+|..+..+.++ +.+++++|++++                       ..|..+.++
T Consensus       141 ~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~-----------------------~~~~~~~~l  197 (313)
T d1ogqa_         141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-----------------------KIPPTFANL  197 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-----------------------ECCGGGGGC
T ss_pred             CchhhccCcccceeeccccccccccccccccccccccccccccccccc-----------------------ccccccccc
Confidence            66666666666666666666665566555555443 555555555544                       444444443


Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 035878          259 SSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDL  338 (496)
Q Consensus       259 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  338 (496)
                      ..+ .+++..+...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|+++|.+|..++++++|++|+|
T Consensus       198 ~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         198 NLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             CCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence            322 45555555555555555556666666666666655443 3555666666666666666666666666666777777


Q ss_pred             cCCcCccccchhhcCCCCCCEEeccCCc
Q 035878          339 SSNQLSGEIPAQIGNLTELSTLSLNGND  366 (496)
Q Consensus       339 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~  366 (496)
                      ++|+++|.+|. ++++++|+.+++++|+
T Consensus       276 s~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         276 SFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            77776666663 4566667777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1e-33  Score=274.37  Aligned_cols=256  Identities=28%  Similarity=0.464  Sum_probs=219.2

Q ss_pred             CCcEEecCCCcccC--CCCcccCCCCCCcEEEccC-CCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEE
Q 035878          236 KLINFTASFNHFSG--PIPTSLKSCSSLYRVRLES-NELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLL  312 (496)
Q Consensus       236 ~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  312 (496)
                      +++.|+++++.++|  .+|..+.++++|++|+|++ |+++|.+|..++++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45666666666665  4677788888888888875 77888888888888888888888888888888888888888999


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCC-CEEeccCCcCccccchhhcCCCCCCEEEccCCcC
Q 035878          313 GLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTEL-STLSLNGNDISGPIPEEIGALLNLDSLDLSMNRL  391 (496)
Q Consensus       313 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  391 (496)
                      +++.|.+.+.+|..++.+++++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. .+++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            999888888888889999999999999999998888888888776 88999999999888888877654 4799999999


Q ss_pred             CCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchh
Q 035878          392 SGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPAS  471 (496)
Q Consensus       392 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  471 (496)
                      .+.+|..+..+++++.+++++|.+++.+| .++.+++++.| +|++|+++|.+|..++++++|++|+|++|+++|.+|. 
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L-~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-  286 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-  286 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEE-ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccc-cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence            99999999999999999999999987766 68888999999 9999999999999999999999999999999999985 


Q ss_pred             hhcCCCCCEEeCcCCC-Cccc-CCCC
Q 035878          472 LSSMLSLVAVNLSYNN-LEGP-LPDG  495 (496)
Q Consensus       472 l~~l~~L~~L~ls~N~-l~g~-ip~~  495 (496)
                      +..+++|+.+++++|+ ++|. +|..
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccCCCCCHHHhCCCccccCCCCCCC
Confidence            5788999999999998 7775 7764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=2e-30  Score=257.80  Aligned_cols=322  Identities=25%  Similarity=0.353  Sum_probs=222.4

Q ss_pred             CCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEE
Q 035878          139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLH  218 (496)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (496)
                      +.+|++|+++++.++. + +.+..+++|++|++++|++++. | .++++++|++|++++|++++..  .++.+++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccccc
Confidence            3445555555555542 1 2344555555555555555532 2 2555555555555555554322  144555555555


Q ss_pred             CCCCCCccccccccCCCCCcEEecCCCcccC-------------------CCCcccCCCCCCcEEEccCCCCCCcccccc
Q 035878          219 LFINKLSGLPPQVCKGGKLINFTASFNHFSG-------------------PIPTSLKSCSSLYRVRLESNELTGDLEQDF  279 (496)
Q Consensus       219 L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-------------------~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  279 (496)
                      ++++.+++++... ....+.......+.+..                   .....+...+.........+....  ...+
T Consensus       117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  193 (384)
T d2omza2         117 LFNNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVL  193 (384)
T ss_dssp             CCSSCCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--CGGG
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc--cccc
Confidence            5555555433221 22223333322222211                   111233444455555555555432  3456


Q ss_pred             CCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCE
Q 035878          280 GIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELST  359 (496)
Q Consensus       280 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  359 (496)
                      ..+++++.+++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|+.+++++|.+++..  .+..+++|++
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            678999999999999987654  46678999999999999853  46788999999999999998654  3778999999


Q ss_pred             EeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCc
Q 035878          360 LSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNS  439 (496)
Q Consensus       360 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~  439 (496)
                      |++++|++++..  .+..++.++.+++++|.+++.  ..+..++++++|++++|++++..  .+..+++|++| ++++|+
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L-~L~~n~  340 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL-FFANNK  340 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEE-ECCSSC
T ss_pred             eeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEE-ECCCCC
Confidence            999999998543  367889999999999999853  34788999999999999998653  37889999999 999999


Q ss_pred             CCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCC
Q 035878          440 LTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYN  486 (496)
Q Consensus       440 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  486 (496)
                      +++ ++ .++++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            984 55 58999999999999999997765  889999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=7.1e-29  Score=246.48  Aligned_cols=302  Identities=25%  Similarity=0.333  Sum_probs=212.6

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      ++.+++|++|++++|++++..  .++++++|++|++++|++++..  .++++++|+.|+++++.+++..+.  .....+.
T Consensus        62 l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~--~~~~~~~  135 (384)
T d2omza2          62 VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPL--KNLTNLN  135 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGG--TTCTTCS
T ss_pred             cccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccccccccccccc--ccccccc
Confidence            344555555555555555322  1555555555555555554321  245555555555555555432221  2233334


Q ss_pred             EEECCCCCCcccc--------------------ccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCcc
Q 035878          216 DLHLFINKLSGLP--------------------PQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDL  275 (496)
Q Consensus       216 ~L~L~~n~l~~lp--------------------~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  275 (496)
                      ......+.+..+.                    ..+.............|...  .......+++++.+++++|.+++..
T Consensus       136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~  213 (384)
T d2omza2         136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT  213 (384)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCC
Confidence            4443333322211                    11222333444444444433  3455678899999999999998765


Q ss_pred             ccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCC
Q 035878          276 EQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLT  355 (496)
Q Consensus       276 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  355 (496)
                      +  +..+++|++|++++|.+++.  +.+..+++|+.+++++|.+++..  .++.+++|++|++++|++++..  .+..++
T Consensus       214 ~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~  285 (384)
T d2omza2         214 P--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLT  285 (384)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred             c--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccc
Confidence            4  45578999999999998853  46788999999999999998654  3788999999999999998543  377899


Q ss_pred             CCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccc
Q 035878          356 ELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDL  435 (496)
Q Consensus       356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~L  435 (496)
                      .++.+++++|.+++.  ..+..++++++|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|++| ++
T Consensus       286 ~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L-~l  358 (384)
T d2omza2         286 ALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWL-SA  358 (384)
T ss_dssp             TCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEE-EC
T ss_pred             ccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEE-EC
Confidence            999999999999853  35788999999999999999653  38899999999999999984 44 68999999999 99


Q ss_pred             cCCcCCccchhhhcCCCCCCEEEcccC
Q 035878          436 SYNSLTGEIPAQLEKLTSLQSMNLSHN  462 (496)
Q Consensus       436 s~N~l~~~~p~~l~~l~~L~~L~Ls~N  462 (496)
                      ++|++++..|  +.++++|++|+|++|
T Consensus       359 ~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999997655  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2e-26  Score=221.71  Aligned_cols=266  Identities=23%  Similarity=0.273  Sum_probs=150.5

Q ss_pred             CcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCC
Q 035878          142 LKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFI  221 (496)
Q Consensus       142 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (496)
                      .+.++-+++.++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            455555555555 4444442  4566666666666644344566666666666666666655556666666666666666


Q ss_pred             CCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCC--ccccccCCCCCccEEEcccCcccccC
Q 035878          222 NKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTG--DLEQDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       222 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      |+++.+|...  ...++.|++..|.+.+..+..+.....++.++...+....  ..+..+..+++|+.+++++|.+.. +
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            6666665433  2355566666665554444444555555666665554321  223344555666666666666542 2


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL  379 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  379 (496)
                      |..  .+++|++|++++|..++..+..+..++.+++|++++|.+++..+..+.++++|++|+|++|+++ .+|..+..++
T Consensus       166 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~  242 (305)
T d1xkua_         166 PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK  242 (305)
T ss_dssp             CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred             Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccccc
Confidence            322  2355666666666666666666666666666666666666555555666666666666666665 4455566666


Q ss_pred             CCCEEEccCCcCCCCChhh------hhCCCCCCEEeccCccCC
Q 035878          380 NLDSLDLSMNRLSGPIPKQ------IGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       380 ~L~~L~Ls~n~l~~~~~~~------l~~~~~L~~L~Ls~n~l~  416 (496)
                      +|++|++++|+++......      .....+|+.|++++|++.
T Consensus       243 ~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            6666666666665332222      223455566666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2e-26  Score=221.65  Aligned_cols=265  Identities=20%  Similarity=0.257  Sum_probs=143.3

Q ss_pred             CCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccc-cccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEcc
Q 035878          189 DLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPP-QVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLE  267 (496)
Q Consensus       189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~  267 (496)
                      ..++++.++..++ .+|..+.  +++++|++++|+++.+|+ .+..+++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566777776666 5565553  567777777777777665 35556666666666666665555666666666666666


Q ss_pred             CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCccc--ccCCcccCCCCCCCEEEccCCcCcc
Q 035878          268 SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIG--GKIPAEIGSLSQLVVLDLSSNQLSG  345 (496)
Q Consensus       268 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~  345 (496)
                      +|+++.. |..  ..+.++.|++.+|.+.+..+..+.....++.++...|...  ...+..+..+++|+++++++|.++ 
T Consensus        88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            6666532 222  1245566666666655544444445555555555554322  222334445555555555555554 


Q ss_pred             ccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccC
Q 035878          346 EIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGN  425 (496)
Q Consensus       346 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  425 (496)
                      .+|..  .+++|++|++++|..++..+..+..++.+++|++++|.+.+..+..+.++++|++|+|++|+++ .+|..+..
T Consensus       164 ~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            22322  2345555555555555555555555555555555555555444455555555555555555554 44445555


Q ss_pred             CccccccccccCCcCCccchhhh------cCCCCCCEEEcccCcC
Q 035878          426 LVGLQDLLDLSYNSLTGEIPAQL------EKLTSLQSMNLSHNNL  464 (496)
Q Consensus       426 l~~L~~LL~Ls~N~l~~~~p~~l------~~l~~L~~L~Ls~N~l  464 (496)
                      +++|++| +|++|+|+..-...|      ..+.+|+.|+|++|++
T Consensus       241 l~~L~~L-~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         241 HKYIQVV-YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCEE-ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccCCCEE-ECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            5555555 555555553211111      2334455555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.5e-26  Score=214.68  Aligned_cols=223  Identities=22%  Similarity=0.188  Sum_probs=131.3

Q ss_pred             EEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEecCCCcc
Q 035878          168 LLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHF  247 (496)
Q Consensus       168 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l  247 (496)
                      .++.+++.++ .+|..+.  +.+++|+|++|++++..+..|.++++|++|++++|++..++                   
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-------------------   72 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-------------------   72 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-------------------
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-------------------
Confidence            3455555555 4554443  45666666666666444455666666666666666665533                   


Q ss_pred             cCCCCcccCCCCCCcEEEcc-CCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcc
Q 035878          248 SGPIPTSLKSCSSLYRVRLE-SNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAE  326 (496)
Q Consensus       248 ~~~~p~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  326 (496)
                          +..+..+..++.+... .+.+....+..|..+++|++|++++|.+....+..+....+|+.+++++|.+++..+..
T Consensus        73 ----~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          73 ----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             ----TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ----cccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence                3333344444444432 33333333445555555555666555555444455555566666666666666555555


Q ss_pred             cCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCC
Q 035878          327 IGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLR  406 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~  406 (496)
                      |..+++|++|++++|.+++..+..|.++++|+++++++|++++..|..|..+++|++|++++|++.+..+..|..+++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            66666666666666666655555666666666666666666666666666666666666666666666666666666666


Q ss_pred             EEeccCccCC
Q 035878          407 SLSLSQNNLN  416 (496)
Q Consensus       407 ~L~Ls~n~l~  416 (496)
                      +|++++|++.
T Consensus       229 ~L~l~~N~l~  238 (284)
T d1ozna_         229 YLRLNDNPWV  238 (284)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEecCCCCC
Confidence            6666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=218.75  Aligned_cols=268  Identities=25%  Similarity=0.226  Sum_probs=204.9

Q ss_pred             EEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcc-cCc
Q 035878          216 DLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLS-YNR  294 (496)
Q Consensus       216 ~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls-~n~  294 (496)
                      .++.++.+++.+|..+.  +.+++|++++|+++...+..|.++++|++|++++|++....+..+..++.++.++.. .+.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            34555555666665443  456667777777765555678888889999999998888777778888888888765 456


Q ss_pred             ccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchh
Q 035878          295 LQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEE  374 (496)
Q Consensus       295 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  374 (496)
                      +....+..|.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|++++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            66666777888899999999999888777777888888999999999988766777888888999999999988777788


Q ss_pred             hcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCC
Q 035878          375 IGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSL  454 (496)
Q Consensus       375 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L  454 (496)
                      |..+++|+++++++|++++..|..|..+++|++|++++|.+.+..+..|..+++|+++ ++++|.+.+.-+. ..-...+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L-~l~~N~l~C~C~~-~~l~~~l  250 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL-RLNDNPWVCDCRA-RPLWAWL  250 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE-ECCSSCEECSGGG-HHHHHHH
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE-EecCCCCCCCccc-hHHHHHH
Confidence            8888899999999999888888888888899999999999988777888888888888 9999888754221 1111234


Q ss_pred             CEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcc
Q 035878          455 QSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       455 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                      +.+....++++...|..+.+   ....+++.++|+|
T Consensus       251 ~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         251 QKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             HHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             HhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            45566667777777776654   4555677777766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=198.13  Aligned_cols=201  Identities=28%  Similarity=0.232  Sum_probs=138.9

Q ss_pred             CCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 035878          257 SCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVL  336 (496)
Q Consensus       257 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  336 (496)
                      +...+.+++.+++.++. +|..+.  +++++|+|++|.+++..+..|.++++|++|++++|+++.. + .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            34455666777777763 454443  4677777777777766556677777777777777777632 2 34567777777


Q ss_pred             EccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878          337 DLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       337 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      ++++|++++ .+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+++..+..+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            777777763 4556667777777777777777666666666777777777777777666666666777777777777777


Q ss_pred             ccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          417 GTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       417 ~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      +..+..+..+++|++| +|++|+|+ .+|..+..+++|++|+|++|++.
T Consensus       162 ~~~~~~~~~l~~L~~L-~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTL-LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEE-ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCcccccccccccee-ecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            6666667777777777 77777777 66766667777777777777665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.6e-23  Score=192.83  Aligned_cols=200  Identities=25%  Similarity=0.204  Sum_probs=110.7

Q ss_pred             CCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEE
Q 035878          139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLH  218 (496)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (496)
                      ...+.+++.++++++ .+|+.+.  +++++|+|++|.+++..+..|.++++|++|++++|+++. +| .++.+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            344555566666666 3455443  456677777776665555566666667777776666652 33 235566666666


Q ss_pred             CCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc
Q 035878          219 LFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       219 L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      +++|+++.++..+..+++|+.|++++|.+.+..+..+..+                        .++++|++++|.+...
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l------------------------~~l~~L~l~~n~l~~l  139 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL------------------------GELQELYLKGNELKTL  139 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC------------------------TTCCEEECTTSCCCCC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccc------------------------ccccccccccccccee
Confidence            6666666555555455555555555554444334444444                        4444444444444444


Q ss_pred             CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCc
Q 035878          299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDIS  368 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  368 (496)
                      .+..+..++.++.+++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       140 ~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            4444444555555555555555544455555555555555555555 45555555555666666655553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=1.2e-19  Score=176.80  Aligned_cols=295  Identities=25%  Similarity=0.269  Sum_probs=172.8

Q ss_pred             CCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEEC
Q 035878          140 LGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHL  219 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (496)
                      ++|++|++++|+++ .+|+.+   .+|++|++++|.++ .++. +  .+.|++|++++|.++ .+|. ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            45666666666666 445433   35666666666665 2222 1  135777777777766 3443 456677777777


Q ss_pred             CCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccC
Q 035878          220 FINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEV  299 (496)
Q Consensus       220 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  299 (496)
                      +++.+...+...   ..+..+.+..+...  .+..+..++.++.++++.|.......    .....+.+....+.+. .+
T Consensus       128 ~~~~~~~~~~~~---~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~----~~~~~~~l~~~~~~~~-~~  197 (353)
T d1jl5a_         128 DNNSLKKLPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE-EL  197 (353)
T ss_dssp             CSSCCSCCCCCC---TTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS-SC
T ss_pred             cccccccccccc---ccccchhhcccccc--ccccccccccceeccccccccccccc----cccccccccccccccc-cc
Confidence            777666654432   34455555544433  23445666777777777776653221    1233445555555443 22


Q ss_pred             CcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCC
Q 035878          300 SPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALL  379 (496)
Q Consensus       300 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  379 (496)
                      + .+..++.|+.+++++|.... .+   ....++..+.+.++.+... +.   ..+.+...++..+.+.+. +.   -..
T Consensus       198 ~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l-~~---l~~  264 (353)
T d1jl5a_         198 P-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL-SE---LPP  264 (353)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE-SC---CCT
T ss_pred             c-cccccccccccccccccccc-cc---ccccccccccccccccccc-cc---cccccccccccccccccc-cc---ccc
Confidence            2 34567778888887776552 22   2345677777777776532 22   235566677766665532 11   113


Q ss_pred             CCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEc
Q 035878          380 NLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNL  459 (496)
Q Consensus       380 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~L  459 (496)
                      .....++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.| ++++|+|+ .+|..   +++|++|++
T Consensus       265 ~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L-~L~~N~L~-~l~~~---~~~L~~L~L  331 (353)
T d1jl5a_         265 NLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERL-IASFNHLA-EVPEL---PQNLKQLHV  331 (353)
T ss_dssp             TCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEE-ECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             hhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEE-ECCCCcCC-ccccc---cCCCCEEEC
Confidence            445666666666532    234577888888888887 56643   4567777 88888887 56643   457888888


Q ss_pred             ccCcCCcccchhhhcCCCCCEEeCc
Q 035878          460 SHNNLSGEIPASLSSMLSLVAVNLS  484 (496)
Q Consensus       460 s~N~l~~~~p~~l~~l~~L~~L~ls  484 (496)
                      ++|+++ .+|+..   ..|+.|.+.
T Consensus       332 ~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         332 EYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CSSCCS-SCCCCC---TTCCEEECC
T ss_pred             cCCcCC-CCCccc---cccCeeECc
Confidence            888887 566532   346666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=1.1e-19  Score=176.97  Aligned_cols=303  Identities=26%  Similarity=0.276  Sum_probs=221.7

Q ss_pred             CCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECC
Q 035878          141 GLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLF  220 (496)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (496)
                      ++++|+|+++.++ .+|+.   .++|++|++++|+++ .+|+.+   .+|+.|++++|+++ .+++.   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5788899998887 56753   478999999999998 678654   58999999999987 34431   2469999999


Q ss_pred             CCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCcccccCC
Q 035878          221 INKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVS  300 (496)
Q Consensus       221 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  300 (496)
                      +|.+..+|. ...+++|++++++++.+.... .   ....+..+.+..+....  ...+..++.++.+++.+|..... +
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~-~  178 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL-P  178 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC-C
T ss_pred             ccccccccc-hhhhccceeeccccccccccc-c---ccccccchhhccccccc--cccccccccceeccccccccccc-c
Confidence            999999985 578899999999999887432 2   24567778877666543  34567788999999999887643 2


Q ss_pred             cCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCC
Q 035878          301 PKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLN  380 (496)
Q Consensus       301 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  380 (496)
                      .   .....+.+...++.+. .++ .+..++.|+.+++++|.... ++.   ...++..+.+.++.+... +.   ....
T Consensus       179 ~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~~~~  245 (353)
T d1jl5a_         179 D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQS  245 (353)
T ss_dssp             C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTT
T ss_pred             c---cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc-cc---cccc
Confidence            2   2234456666666554 333 45778999999999998763 333   356788899999888732 22   2456


Q ss_pred             CCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcc
Q 035878          381 LDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLS  460 (496)
Q Consensus       381 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  460 (496)
                      +...++..+.+.+. +.   -.......++..+.+.+.    ...+++|++| ++++|+++ .+|..   +++|++|+++
T Consensus       246 l~~~~~~~~~~~~l-~~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L-~Ls~N~l~-~lp~~---~~~L~~L~L~  312 (353)
T d1jl5a_         246 LTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL----CDLPPSLEEL-NVSNNKLI-ELPAL---PPRLERLIAS  312 (353)
T ss_dssp             CCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE----CCCCTTCCEE-ECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             cccccccccccccc-cc---ccchhcccccccCccccc----cccCCCCCEE-ECCCCccC-ccccc---cCCCCEEECC
Confidence            77888877776532 11   113456777777777632    2346789999 99999999 67753   5789999999


Q ss_pred             cCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          461 HNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       461 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      +|+++ .+|..   +.+|++|++++|+++ .+|.
T Consensus       313 ~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         313 FNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             SSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            99998 56753   568999999999997 5663

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-23  Score=212.64  Aligned_cols=376  Identities=19%  Similarity=0.192  Sum_probs=238.7

Q ss_pred             eccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc----cCCcCCCCCCCCCEEEccCCCCccc---
Q 035878          107 FDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSG----RIPEEIGNCKLLTLLALDGNFLSGP---  179 (496)
Q Consensus       107 L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~---  179 (496)
                      ++|+.||+++|++++.--..+        +..++++++|+|++|.++.    .+...+..+++|++|||++|.++..   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l--------~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAEL--------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHH--------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHH--------HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            455677777777764211111        3456788889999998874    3345567788999999999988632   


Q ss_pred             -CCcccc-CCCCCceEecccCcCCcc----cCccCCCCCCCCEEECCCCCCcc-----ccccccC-CCCCcEEecCCCcc
Q 035878          180 -IPSSLG-NLSDLAVLAVASNQLSGE----IPANIGTLSKLTDLHLFINKLSG-----LPPQVCK-GGKLINFTASFNHF  247 (496)
Q Consensus       180 -~p~~l~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~-l~~L~~L~l~~n~l  247 (496)
                       +...+. ...+|++|++++|++++.    ++..+..+++|++|++++|.+..     +...+.. ..............
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  153 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL  153 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccccc
Confidence             222232 235799999999988743    45667788899999999988765     2222211 12233333333322


Q ss_pred             cCC----CCcccCCCCCCcEEEccCCCCCCccc----ccc-CCCCCccEEEcccCccccc----CCcCcCCCCCCCEEEc
Q 035878          248 SGP----IPTSLKSCSSLYRVRLESNELTGDLE----QDF-GIYPNLTYIDLSYNRLQGE----VSPKWGKCQKLTLLGL  314 (496)
Q Consensus       248 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L  314 (496)
                      ...    ....+.....++.++++.+.......    ..+ ........+++..+.+...    ....+...+.++.+++
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  233 (460)
T d1z7xw1         154 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL  233 (460)
T ss_dssp             BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred             chhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence            211    11223445677788887776542110    011 1224556777777655422    1122345677888888


Q ss_pred             cCCcccc-----cCCcccCCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCcCccccchhh-----cCCCC
Q 035878          315 AGNSIGG-----KIPAEIGSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGPIPEEI-----GALLN  380 (496)
Q Consensus       315 ~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~  380 (496)
                      ++|.+..     ...........++.+++++|.+...    ....+...+.++.+++++|.++......+     .....
T Consensus       234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~  313 (460)
T d1z7xw1         234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ  313 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred             hhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence            8887643     2233445567899999999887643    23345567889999999998864333222     13457


Q ss_pred             CCEEEccCCcCCCCChh----hhhCCCCCCEEeccCccCCcc----CChhcc-CCccccccccccCCcCCcc----chhh
Q 035878          381 LDSLDLSMNRLSGPIPK----QIGELRDLRSLSLSQNNLNGT----IPFQIG-NLVGLQDLLDLSYNSLTGE----IPAQ  447 (496)
Q Consensus       381 L~~L~Ls~n~l~~~~~~----~l~~~~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~LL~Ls~N~l~~~----~p~~  447 (496)
                      |+.+++++|.++.....    .+...++|++|+|++|+++++    ++..+. ..+.|++| +|++|++++.    +.+.
T Consensus       314 L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L-~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL-WLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCCHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEE-ECCCCCCChHHHHHHHHH
Confidence            89999999988755333    344567899999999988753    233333 45678888 9999998753    4566


Q ss_pred             hcCCCCCCEEEcccCcCCcccchhh----h-cCCCCCEEeCcCCCCccc
Q 035878          448 LEKLTSLQSMNLSHNNLSGEIPASL----S-SMLSLVAVNLSYNNLEGP  491 (496)
Q Consensus       448 l~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~ls~N~l~g~  491 (496)
                      +..+++|++|||++|+++......|    . +...|+.|++++|.+...
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            7778899999999999986544333    2 334799999999988754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-21  Score=198.30  Aligned_cols=350  Identities=21%  Similarity=0.187  Sum_probs=243.0

Q ss_pred             CCCcEEEccCCcCcccC-CcCCCCCCCCCEEEccCCCCcc----cCCccccCCCCCceEecccCcCCcc----cCccCC-
Q 035878          140 LGLKNFLLQDNMLSGRI-PEEIGNCKLLTLLALDGNFLSG----PIPSSLGNLSDLAVLAVASNQLSGE----IPANIG-  209 (496)
Q Consensus       140 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-  209 (496)
                      .+|++||+++|++++.. .+.+..++++++|+|++|.++.    .++..+..+++|++|+|++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998643 3445678999999999999873    3455677899999999999988632    233333 


Q ss_pred             CCCCCCEEECCCCCCcc-----ccccccCCCCCcEEecCCCcccCCCCc----cc-CCCCCCcEEEccCCCCCCcc----
Q 035878          210 TLSKLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFNHFSGPIPT----SL-KSCSSLYRVRLESNELTGDL----  275 (496)
Q Consensus       210 ~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~~p~----~l-~~l~~L~~L~L~~n~l~~~~----  275 (496)
                      ...+|++|++++|++++     ++..+..+++|++|++++|.++.....    .+ ...............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            34589999999999876     566677889999999999987642211    11 12223444444444332111    


Q ss_pred             ccccCCCCCccEEEcccCcccccC----CcCc-CCCCCCCEEEccCCccccc----CCcccCCCCCCCEEEccCCcCccc
Q 035878          276 EQDFGIYPNLTYIDLSYNRLQGEV----SPKW-GKCQKLTLLGLAGNSIGGK----IPAEIGSLSQLVVLDLSSNQLSGE  346 (496)
Q Consensus       276 ~~~~~~l~~L~~L~ls~n~l~~~~----~~~~-~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~  346 (496)
                      ...+...+.++.++++++......    ...+ ........+++..+.+...    ....+...+.++.+++++|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            112334578888999887654321    0111 1223566788887766532    112344578899999999987532


Q ss_pred             -----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCCChhhh-----hCCCCCCEEeccC
Q 035878          347 -----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGPIPKQI-----GELRDLRSLSLSQ  412 (496)
Q Consensus       347 -----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-----~~~~~L~~L~Ls~  412 (496)
                           .+........++.+++++|.+...    ....+...+.++.+++++|.+.+.....+     .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 334455678999999999988643    23345668899999999999874333222     2346899999999


Q ss_pred             ccCCccCChhc----cCCccccccccccCCcCCcc----chhhhc-CCCCCCEEEcccCcCCcc----cchhhhcCCCCC
Q 035878          413 NNLNGTIPFQI----GNLVGLQDLLDLSYNSLTGE----IPAQLE-KLTSLQSMNLSHNNLSGE----IPASLSSMLSLV  479 (496)
Q Consensus       413 n~l~~~~p~~~----~~l~~L~~LL~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~  479 (496)
                      |.++......+    ....+|++| +|++|++++.    +++.+. ..+.|++|+|++|+++..    +++.+..+++|+
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L-~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             cchhhhhhhhcccccccccchhhh-heeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            99876543333    445689999 9999999753    344443 467899999999999854    556678889999


Q ss_pred             EEeCcCCCCcc
Q 035878          480 AVNLSYNNLEG  490 (496)
Q Consensus       480 ~L~ls~N~l~g  490 (496)
                      +|||++|+++.
T Consensus       401 ~L~Ls~N~i~~  411 (460)
T d1z7xw1         401 ELDLSNNCLGD  411 (460)
T ss_dssp             EEECCSSSCCH
T ss_pred             EEECCCCcCCH
Confidence            99999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=4.6e-19  Score=162.07  Aligned_cols=188  Identities=24%  Similarity=0.332  Sum_probs=119.5

Q ss_pred             CCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEE
Q 035878          281 IYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTL  360 (496)
Q Consensus       281 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  360 (496)
                      .+.+|++|++.+|.++..  +.+..+++|++|++++|++++..|  +..+++++++++++|.++. ++ .+..+++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-ccccccccccc
Confidence            344555555555555532  235556666666666666654322  5666666666666666652 22 35566777777


Q ss_pred             eccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcC
Q 035878          361 SLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSL  440 (496)
Q Consensus       361 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l  440 (496)
                      +++++...+..  .+...+.++.+.++++.+....  .+..+++|++|++++|.+.+..  .++++++|++| ++++|++
T Consensus       113 ~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L-~Ls~n~l  185 (227)
T d1h6ua2         113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTL-KADDNKI  185 (227)
T ss_dssp             ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEE-ECCSSCC
T ss_pred             ccccccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceec-ccCCCcc
Confidence            77776665432  3455667777777777766432  2556677777777777775332  36677777777 8888877


Q ss_pred             CccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcC
Q 035878          441 TGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSY  485 (496)
Q Consensus       441 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  485 (496)
                      ++ ++. ++++++|++|+|++|++++. + .++++++|+.|++++
T Consensus       186 ~~-l~~-l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SD-ISP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             CC-Chh-hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            74 333 77788888888888888754 3 277788888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=8e-19  Score=160.48  Aligned_cols=186  Identities=23%  Similarity=0.318  Sum_probs=84.8

Q ss_pred             CCCCCEEECCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEc
Q 035878          211 LSKLTDLHLFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDL  290 (496)
Q Consensus       211 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  290 (496)
                      +.+|++|++.+|.++.++ .+.++++|++|++++|++++..|  +..+++++.+++++|.++..  ..+..+++|+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccccccccc
Confidence            334444444444443331 23333444444444444333211  44444555555555444421  12444555555555


Q ss_pred             ccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccc
Q 035878          291 SYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGP  370 (496)
Q Consensus       291 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  370 (496)
                      +++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+.+..  .++++++|++|++++|++++ 
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccCC-
Confidence            55544332  1233444555555555544422  12344455555555555554321  24455555555555555553 


Q ss_pred             cchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEecc
Q 035878          371 IPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLS  411 (496)
Q Consensus       371 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls  411 (496)
                      ++ .+..+++|++|++++|++++ ++. +.++++|++|+++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEee
Confidence            22 24555555555555555553 221 4555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.9e-19  Score=162.93  Aligned_cols=225  Identities=16%  Similarity=0.096  Sum_probs=144.7

Q ss_pred             EEEccCCCCCCccccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccC-CcccCCCCCCCEEEccC-
Q 035878          263 RVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKI-PAEIGSLSQLVVLDLSS-  340 (496)
Q Consensus       263 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~-  340 (496)
                      .++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..|..++.++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4444444444 3333321  45666667666666544455666777777777777665433 33566677777776654 


Q ss_pred             CcCccccchhhcCCCCCCEEeccCCcCccccch-hhcCCCCCCEEEccCCcCCCCChhhhhCCC-CCCEEeccCccCCcc
Q 035878          341 NQLSGEIPAQIGNLTELSTLSLNGNDISGPIPE-EIGALLNLDSLDLSMNRLSGPIPKQIGELR-DLRSLSLSQNNLNGT  418 (496)
Q Consensus       341 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~Ls~n~l~~~  418 (496)
                      |.+....+..|..+++|+++++++|+++...+. .+..+..+..+...++.+....+..+..++ .++.+++++|+++ .
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~  167 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  167 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-c
Confidence            456655566677777777777777777633221 233445555566666666644445555553 7888899998888 4


Q ss_pred             CChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCCC
Q 035878          419 IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  494 (496)
Q Consensus       419 ~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  494 (496)
                      ++.......++.+++++++|+++...+..|.++++|++|++++|+++...+..|.++++|+++++.+.+   .+|+
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~---~lp~  240 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT  240 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS---CSCC
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCC---cCCC
Confidence            444445556666664778888885445568899999999999999986556678888888877775543   5554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.9e-18  Score=153.77  Aligned_cols=165  Identities=27%  Similarity=0.347  Sum_probs=98.5

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEE
Q 035878          306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLD  385 (496)
Q Consensus       306 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  385 (496)
                      +.+|++|++++|.++...  .+..+++|++|++++|++++. + .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            345555555555555321  245556666666666666542 2 24556666666666666653 33 355666666666


Q ss_pred             ccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       386 Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      +++|.+.. ++ .+..++.++.+++++|.+++  +..+..+++|+++ ++++|++++ ++ .++++++|++|++++|+++
T Consensus       119 l~~~~~~~-~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l-~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGISD-IN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL-SLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCCC-CG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEE-ECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc-cc-cccccccccccccccccccc--ccccccccccccc-ccccccccc-cc-cccCCCCCCEEECCCCCCC
Confidence            66666652 22 35566666777777666653  2235556667766 777777764 33 2667777777777777776


Q ss_pred             cccchhhhcCCCCCEEeCcC
Q 035878          466 GEIPASLSSMLSLVAVNLSY  485 (496)
Q Consensus       466 ~~~p~~l~~l~~L~~L~ls~  485 (496)
                      . +| .+..+++|++|+|++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEccC
Confidence            3 44 467777777777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.4e-18  Score=155.82  Aligned_cols=178  Identities=17%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             ccCCCCCCcEEEccCCCCCCcc-ccccCCCCCccEEEccc-CcccccCCcCcCCCCCCCEEEccCCcccccCCc-ccCCC
Q 035878          254 SLKSCSSLYRVRLESNELTGDL-EQDFGIYPNLTYIDLSY-NRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPA-EIGSL  330 (496)
Q Consensus       254 ~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l  330 (496)
                      .|.++++|++|++++|.+...+ +..|..++.++++.+.. |.+....+..|..+++|+++++++|++....+. .+..+
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l  127 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            3444445555555554444322 22344445555554432 344444444455555555555555555432111 12223


Q ss_pred             CCCCEEEccCCcCccccchhhcCCC-CCCEEeccCCcCccccchhhcCCCCCCEE-EccCCcCCCCChhhhhCCCCCCEE
Q 035878          331 SQLVVLDLSSNQLSGEIPAQIGNLT-ELSTLSLNGNDISGPIPEEIGALLNLDSL-DLSMNRLSGPIPKQIGELRDLRSL  408 (496)
Q Consensus       331 ~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~l~~~~~L~~L  408 (496)
                      ..++.+...++.+....+..+..++ .++.|++++|++++. +.......+++++ ++++|+++...+..|.++++|++|
T Consensus       128 ~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             cccccccccccccccccccccccccccceeeeccccccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence            3444444444444433333333332 455566666665532 2222233333333 345555553333445556666666


Q ss_pred             eccCccCCccCChhccCCcccccc
Q 035878          409 SLSQNNLNGTIPFQIGNLVGLQDL  432 (496)
Q Consensus       409 ~Ls~n~l~~~~p~~~~~l~~L~~L  432 (496)
                      ++++|+++...+..+.+++.|+.+
T Consensus       207 ~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         207 DISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ECCCCcCCccCHHHHcCCcccccC
Confidence            666666653333345555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2.3e-18  Score=153.09  Aligned_cols=170  Identities=20%  Similarity=0.183  Sum_probs=119.7

Q ss_pred             EEcCCCCCccccCCCCCCCCCCCceeccceEEccCCcccccCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCCcCCC
Q 035878           82 INLANTGLAGTLHDLDFSSFPNLLRFDVYELDVSRNNMTGGIDPRLFPDDKNQPMTGLLGLKNFLLQDNMLSGRIPEEIG  161 (496)
Q Consensus        82 L~L~~~~l~g~~~~~~l~~l~~L~~L~L~~L~Ls~n~l~~~ip~~~~~~~~n~~l~~l~~L~~L~L~~n~l~~~~~~~l~  161 (496)
                      +++++++++ .+|. .+.  ++++     +|+|++|+|++.++...        |.++++|++|+|++|.+.+..+..+.
T Consensus        13 v~Cs~~~L~-~iP~-~lp--~~l~-----~L~Ls~N~i~~~~~~~~--------f~~l~~L~~L~L~~N~i~~~~~~~~~   75 (192)
T d1w8aa_          13 VDCTGRGLK-EIPR-DIP--LHTT-----ELLLNDNELGRISSDGL--------FGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             EECTTSCCS-SCCS-CCC--TTCS-----EEECCSCCCCSBCCSCS--------GGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             EEEeCCCcC-ccCC-CCC--CCCC-----EEEeCCCCCcccccccc--------cCCCceEeeeeccccccccccccccc
Confidence            444566665 5554 332  3444     78889999986666553        67889999999999999988888889


Q ss_pred             CCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEECCCCCCccccccccCCCCCcEEe
Q 035878          162 NCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLHLFINKLSGLPPQVCKGGKLINFT  241 (496)
Q Consensus       162 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  241 (496)
                      .+++|++|+|++|++++..|..|.++++|++|+|++|++++..++.|..+++|++|++++|.+...+....-...++.+.
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~  155 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS  155 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred             cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhc
Confidence            99999999999999987778888899999999999999988778888889999999999988875332211112234444


Q ss_pred             cCCCcccCCCCcccCCCCCCcEEEccCCCC
Q 035878          242 ASFNHFSGPIPTSLKSCSSLYRVRLESNEL  271 (496)
Q Consensus       242 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  271 (496)
                      +..+.++...|..+   ..++.++++.+.+
T Consensus       156 l~~~~~~c~~p~~l---~~~~l~~L~~n~l  182 (192)
T d1w8aa_         156 LNGGAARCGAPSKV---RDVQIKDLPHSEF  182 (192)
T ss_dssp             CSGGGCBBCSSTTT---TTSBGGGSCTTTC
T ss_pred             ccCCCeEeCCChhh---cCCEeeecCHhhC
Confidence            45555544444332   2333444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.2e-17  Score=150.47  Aligned_cols=165  Identities=27%  Similarity=0.349  Sum_probs=122.8

Q ss_pred             CCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEe
Q 035878          282 YPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLS  361 (496)
Q Consensus       282 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  361 (496)
                      +.+|++|++++|.+++..  .+..+++|++|++++|++++..  .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            456777777777766432  3566777888888888777533  35677888888888888874 34 477788888888


Q ss_pred             ccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCC
Q 035878          362 LNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLT  441 (496)
Q Consensus       362 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~  441 (496)
                      +++|.+.. + ..+..++.++.+++++|.+++.  ..+..+++|+++++++|++++ ++ .+.++++|++| ++++|+++
T Consensus       119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L-~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNL-YLSKNHIS  191 (210)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE-ECCSSCCC
T ss_pred             cccccccc-c-cccccccccccccccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEE-ECCCCCCC
Confidence            88888763 2 3577788888888888888743  346678888899999888874 33 37788888888 99999888


Q ss_pred             ccchhhhcCCCCCCEEEccc
Q 035878          442 GEIPAQLEKLTSLQSMNLSH  461 (496)
Q Consensus       442 ~~~p~~l~~l~~L~~L~Ls~  461 (496)
                       .+| .+.++++|++|+|++
T Consensus       192 -~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -BCG-GGTTCTTCSEEEEEE
T ss_pred             -CCh-hhcCCCCCCEEEccC
Confidence             455 588889999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.6e-17  Score=147.01  Aligned_cols=161  Identities=30%  Similarity=0.448  Sum_probs=96.8

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEE
Q 035878          306 CQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLD  385 (496)
Q Consensus       306 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  385 (496)
                      +.++++|++++|.++..  ..+..+++|++|++++|++++..+  ++++++|++|++++|.+.. ++ .+..++.|++|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccc
Confidence            34555555555555432  234455666666666666654322  5566666666666666652 22 355666666666


Q ss_pred             ccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCC
Q 035878          386 LSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLS  465 (496)
Q Consensus       386 Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  465 (496)
                      +++|.+...  ..+..+++|+.|++++|++. .++ .+..+++++++ ++++|++++. + .++++++|++|++++|+++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L-~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQL-NFSSNQVTDL-K-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEE-ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccccccccccc-ccccccccCC-c-cccCCCCCCEEECCCCCCC
Confidence            666666533  23556667777777777665 233 46666777777 7777777643 2 3667777777777777776


Q ss_pred             cccchhhhcCCCCCEE
Q 035878          466 GEIPASLSSMLSLVAV  481 (496)
Q Consensus       466 ~~~p~~l~~l~~L~~L  481 (496)
                      + ++ .+..+++|+.|
T Consensus       186 ~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CG-GGGGCTTCSEE
T ss_pred             C-Cc-cccCCCCCCcC
Confidence            4 33 46677777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4e-18  Score=151.48  Aligned_cols=109  Identities=31%  Similarity=0.393  Sum_probs=48.7

Q ss_pred             CCCEEEccCCccccc-CCcccCCCCCCCEEEccCCcCccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEc
Q 035878          308 KLTLLGLAGNSIGGK-IPAEIGSLSQLVVLDLSSNQLSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDL  386 (496)
Q Consensus       308 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  386 (496)
                      ++++|+|++|++++. .+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            344444444444332 2233344444444444444444444444444444444444444444433444444444444444


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878          387 SMNRLSGPIPKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       387 s~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      ++|+|++..+.+|..+++|++|+|++|.+.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCccccccCHHHhcCCcccccccccccccc
Confidence            444444444444444444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.1e-17  Score=145.71  Aligned_cols=161  Identities=24%  Similarity=0.352  Sum_probs=78.7

Q ss_pred             CCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEEE
Q 035878          139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDLH  218 (496)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (496)
                      +.++++|++++|.++. + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .++++++|++|+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccc
Confidence            4455555555555542 1 224455555555555555553221  4555555555555555442 22 244555555555


Q ss_pred             CCCCCCccccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccCCCCCCccccccCCCCCccEEEcccCccccc
Q 035878          219 LFINKLSGLPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLESNELTGDLEQDFGIYPNLTYIDLSYNRLQGE  298 (496)
Q Consensus       219 L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  298 (496)
                      ++++....++                         .+..+++|+.|++++|++...  ..+..++++++|++.+|.+++.
T Consensus       113 l~~~~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         113 LFNNQITDID-------------------------PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CCSSCCCCCG-------------------------GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccccc-------------------------ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC
Confidence            5555444322                         234445555555555554421  2344455555555555555432


Q ss_pred             CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 035878          299 VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVL  336 (496)
Q Consensus       299 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  336 (496)
                        ..+.++++|++|++++|++++ ++ .++.+++|++|
T Consensus       166 --~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         166 --KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             --ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence              124555556666666665553 22 34555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.2e-17  Score=156.01  Aligned_cols=58  Identities=22%  Similarity=0.237  Sum_probs=28.0

Q ss_pred             CCCCCEEECCCCCCcc--ccccccCCCCCcEEecCCCcccCCCCcccCCCCCCcEEEccC
Q 035878          211 LSKLTDLHLFINKLSG--LPPQVCKGGKLINFTASFNHFSGPIPTSLKSCSSLYRVRLES  268 (496)
Q Consensus       211 l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~  268 (496)
                      ..+|++||++++.++.  ++..+..+++|++|+++++.+++..+..+..+++|++|++++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3455555555555443  333333444444444444444444444444555555555555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.9e-17  Score=153.58  Aligned_cols=207  Identities=20%  Similarity=0.230  Sum_probs=107.9

Q ss_pred             CCccEEEcccCccccc-CCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC-cCccc-cchhhcCCCCCCE
Q 035878          283 PNLTYIDLSYNRLQGE-VSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSN-QLSGE-IPAQIGNLTELST  359 (496)
Q Consensus       283 ~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~  359 (496)
                      .+|++|+++++.+++. +...+..+++|++|++++|.+++..+..++.+++|++|+++++ .+++. +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4555555555554432 2223455556666666666555555555555666666666664 34321 1222345666666


Q ss_pred             EeccCC-cCccc-cchhhcC-CCCCCEEEccCCc--CCCC-ChhhhhCCCCCCEEeccCc-cCCccCChhccCCcccccc
Q 035878          360 LSLNGN-DISGP-IPEEIGA-LLNLDSLDLSMNR--LSGP-IPKQIGELRDLRSLSLSQN-NLNGTIPFQIGNLVGLQDL  432 (496)
Q Consensus       360 L~Ls~n-~l~~~-~~~~~~~-l~~L~~L~Ls~n~--l~~~-~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L  432 (496)
                      |+++++ .+++. +...+.. ++.|+.|+++++.  +++. +...+.++++|++|++++| .+++..+..+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            666664 33321 1112222 3566666666542  3221 2223345666777777665 3555555666666667766


Q ss_pred             ccccCC-cCCccchhhhcCCCCCCEEEcccCcCCcccchhhhcCCCCCEEeCcCCCCcccCC
Q 035878          433 LDLSYN-SLTGEIPAQLEKLTSLQSMNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       433 L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                       ++++| .+++.....++++++|++|+++++--.+.++.....+++|+   +..+++++..|
T Consensus       206 -~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~  263 (284)
T d2astb2         206 -SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIAR  263 (284)
T ss_dssp             -ECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTC
T ss_pred             -ECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCC
Confidence             77664 45555555566677777777776622222333333444443   45556655443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.62  E-value=9.4e-17  Score=156.05  Aligned_cols=135  Identities=16%  Similarity=0.240  Sum_probs=65.1

Q ss_pred             CCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC-----ChhhhhCCCCCCEEeccCccCCcc----CC
Q 035878          354 LTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP-----IPKQIGELRDLRSLSLSQNNLNGT----IP  420 (496)
Q Consensus       354 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~l~~~~~L~~L~Ls~n~l~~~----~p  420 (496)
                      .+.|+.+++++|.++..    +...+...+.|++|++++|.+...     +...+..+++|++|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            44555555555555422    222233445555555555555421     112234455555666655555422    22


Q ss_pred             hhccCCccccccccccCCcCCccch----hhhcC--CCCCCEEEcccCcCCcc----cchhhh-cCCCCCEEeCcCCCCc
Q 035878          421 FQIGNLVGLQDLLDLSYNSLTGEIP----AQLEK--LTSLQSMNLSHNNLSGE----IPASLS-SMLSLVAVNLSYNNLE  489 (496)
Q Consensus       421 ~~~~~l~~L~~LL~Ls~N~l~~~~p----~~l~~--l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~ls~N~l~  489 (496)
                      ..+..++.|++| ++++|.+++.-.    ..+..  .+.|++|++++|+++..    +...+. .+++|++|++++|++.
T Consensus       237 ~~l~~~~~L~~L-~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLREL-GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEE-ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhh-hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            334455555555 666665554311    22222  24566666666666532    222332 3556666666666664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=1.3e-16  Score=155.09  Aligned_cols=251  Identities=20%  Similarity=0.206  Sum_probs=140.9

Q ss_pred             CccCCCCCCCCEEECCCCCCcc-----ccccccCCCCCcEEecCCCcccCC----------CCcccCCCCCCcEEEccCC
Q 035878          205 PANIGTLSKLTDLHLFINKLSG-----LPPQVCKGGKLINFTASFNHFSGP----------IPTSLKSCSSLYRVRLESN  269 (496)
Q Consensus       205 p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~----------~p~~l~~l~~L~~L~L~~n  269 (496)
                      ...+.....|++|++++|.+..     +...+...++|+.++++.+.....          +...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3445567788888888887754     444556667777777766543211          1122344555666666655


Q ss_pred             CCCCcc----ccccCCCCCccEEEcccCcccccCCcCcCCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 035878          270 ELTGDL----EQDFGIYPNLTYIDLSYNRLQGEVSPKWGKCQKLTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQLSG  345 (496)
Q Consensus       270 ~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  345 (496)
                      .++...    ...+...++|++|++++|.+.......+..  .+..+         .........+.|+.+++++|.++.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeecccccccc
Confidence            554331    112223445555555555443211000000  00000         000011234567777777776653


Q ss_pred             c----cchhhcCCCCCCEEeccCCcCccc-----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccC
Q 035878          346 E----IPAQIGNLTELSTLSLNGNDISGP-----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQ  412 (496)
Q Consensus       346 ~----~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~  412 (496)
                      .    +...+..++.|++|++++|.++..     +...+..+++|++|++++|.++..    +...+..+++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            2    233345667777777777777532     223455667788888888776532    334566778888888888


Q ss_pred             ccCCccCChhc----c--CCccccccccccCCcCCcc----chhhhc-CCCCCCEEEcccCcCCcc
Q 035878          413 NNLNGTIPFQI----G--NLVGLQDLLDLSYNSLTGE----IPAQLE-KLTSLQSMNLSHNNLSGE  467 (496)
Q Consensus       413 n~l~~~~p~~~----~--~l~~L~~LL~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~  467 (496)
                      |.+++.....+    .  ....|++| ++++|+++..    +...+. ++++|++|+|++|++...
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L-~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTL-RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEE-ECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEE-ECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            88765433222    2  23567788 8888888753    334443 578899999999999743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.2e-14  Score=117.00  Aligned_cols=118  Identities=31%  Similarity=0.375  Sum_probs=72.2

Q ss_pred             CEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccC
Q 035878          358 STLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSY  437 (496)
Q Consensus       358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~  437 (496)
                      ++|++++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +| .++.+++|+++ ++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L-~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL-LLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE-ECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeE-ECCC
Confidence            35666666665 333 3566666666666666666 445556666666666666666653 33 36666667666 7777


Q ss_pred             CcCCccc-hhhhcCCCCCCEEEcccCcCCcc---cchhhhcCCCCCEE
Q 035878          438 NSLTGEI-PAQLEKLTSLQSMNLSHNNLSGE---IPASLSSMLSLVAV  481 (496)
Q Consensus       438 N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L  481 (496)
                      |+++... ...+..+++|++|++++|++++.   .......+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7766332 24567777777777777777632   23334556666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.3e-15  Score=126.39  Aligned_cols=128  Identities=22%  Similarity=0.201  Sum_probs=67.7

Q ss_pred             cCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccc
Q 035878          352 GNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQD  431 (496)
Q Consensus       352 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  431 (496)
                      .++.++++|+|++|+++ .++..+..+++|++|++++|+++ .++ .+..+++|++|++++|+++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34445555555555554 23333444555555555555555 222 2455555555555555555333333445555555


Q ss_pred             cccccCCcCCccc-hhhhcCCCCCCEEEcccCcCCccc---chhhhcCCCCCEEeC
Q 035878          432 LLDLSYNSLTGEI-PAQLEKLTSLQSMNLSHNNLSGEI---PASLSSMLSLVAVNL  483 (496)
Q Consensus       432 LL~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~l  483 (496)
                      | ++++|+++..- ...+..+++|++|++++|+++...   +..+..+++|++||-
T Consensus        92 L-~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 L-ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             E-ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             c-eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            5 66666655321 134566677777777777765321   124666777777663

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.5e-15  Score=126.75  Aligned_cols=109  Identities=17%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCCCCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCC
Q 035878          136 MTGLLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGNFLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLT  215 (496)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (496)
                      +.+..++|+|+|++|+|+. ++..+..+++|++|++++|.++. ++ .|..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            3455566666666666663 34444556666666666666662 22 356666666666666666643333344566666


Q ss_pred             EEECCCCCCccccc--cccCCCCCcEEecCCCcc
Q 035878          216 DLHLFINKLSGLPP--QVCKGGKLINFTASFNHF  247 (496)
Q Consensus       216 ~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~n~l  247 (496)
                      +|++++|+++.++.  .+..+++|+++++++|.+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCcc
Confidence            66666666655432  233444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.6e-14  Score=116.58  Aligned_cols=103  Identities=29%  Similarity=0.335  Sum_probs=91.5

Q ss_pred             CEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEccc
Q 035878          382 DSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSH  461 (496)
Q Consensus       382 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  461 (496)
                      ++|++++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|+.+ ++++|++++ +| .+.++++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L-~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL-QASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE-ECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccc-ccccccccc-cC-ccccccccCeEECCC
Confidence            57999999998 455 4889999999999999998 678889999999999 999999994 55 489999999999999


Q ss_pred             CcCCccc-chhhhcCCCCCEEeCcCCCCcc
Q 035878          462 NNLSGEI-PASLSSMLSLVAVNLSYNNLEG  490 (496)
Q Consensus       462 N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g  490 (496)
                      |+++... ...+..+++|+++++++|++++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9998543 3578999999999999999975

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=1e-14  Score=129.53  Aligned_cols=131  Identities=24%  Similarity=0.303  Sum_probs=94.2

Q ss_pred             ccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccC
Q 035878          346 EIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGN  425 (496)
Q Consensus       346 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  425 (496)
                      .++..+..+++|++|++++|+++. ++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|+++. + ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence            345667777888888888888773 43 4777788888888888877 455555555678888888888873 3 34677


Q ss_pred             CccccccccccCCcCCccch-hhhcCCCCCCEEEcccCcCCcccch----------hhhcCCCCCEEe
Q 035878          426 LVGLQDLLDLSYNSLTGEIP-AQLEKLTSLQSMNLSHNNLSGEIPA----------SLSSMLSLVAVN  482 (496)
Q Consensus       426 l~~L~~LL~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~  482 (496)
                      +++|+.| ++++|+++.... ..+..+++|++|++++|+++...+.          .+..+++|+.||
T Consensus       114 l~~L~~L-~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVL-YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEE-EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccc-ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7888888 888888874321 4678888888888888887654332          256788888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.6e-12  Score=105.69  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             CCCCcEEEccCCcCcccCCcCCCCCCCCCEEEccCC-CCcccCCccccCCCCCceEecccCcCCcccCccCCCCCCCCEE
Q 035878          139 LLGLKNFLLQDNMLSGRIPEEIGNCKLLTLLALDGN-FLSGPIPSSLGNLSDLAVLAVASNQLSGEIPANIGTLSKLTDL  217 (496)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (496)
                      +...+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|++|++++|++++..+.+|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334455666666665 44556666777777777655 3665555567777777777777777776666667777777777


Q ss_pred             ECCCCCCccccccccCCCCCcEEecCCCcc
Q 035878          218 HLFINKLSGLPPQVCKGGKLINFTASFNHF  247 (496)
Q Consensus       218 ~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l  247 (496)
                      +|++|+++.+|...+...+|+.|++++|.+
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             eccCCCCcccChhhhccccccccccCCCcc
Confidence            777777777666655555566666666555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-11  Score=104.67  Aligned_cols=106  Identities=22%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             CCEEEccCCcccccCCcccCCCCCCCEEEccCCc-CccccchhhcCCCCCCEEeccCCcCccccchhhcCCCCCCEEEcc
Q 035878          309 LTLLGLAGNSIGGKIPAEIGSLSQLVVLDLSSNQ-LSGEIPAQIGNLTELSTLSLNGNDISGPIPEEIGALLNLDSLDLS  387 (496)
Q Consensus       309 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  387 (496)
                      .+.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555544 334445555666666665443 554444456666666666666666665555556666666666666


Q ss_pred             CCcCCCCChhhhhCCCCCCEEeccCccCC
Q 035878          388 MNRLSGPIPKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       388 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      +|+++...+..+. ...|++|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhc-cccccccccCCCccc
Confidence            6666633333333 335666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=1.4e-13  Score=121.96  Aligned_cols=131  Identities=25%  Similarity=0.329  Sum_probs=106.1

Q ss_pred             CCCEEeccCC--cCccccchhhcCCCCCCEEEccCCcCCCCChhhhhCCCCCCEEeccCccCCccCChhccCCccccccc
Q 035878          356 ELSTLSLNGN--DISGPIPEEIGALLNLDSLDLSMNRLSGPIPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLL  433 (496)
Q Consensus       356 ~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL  433 (496)
                      ..+.+++.+.  .+. .++..+..+++|++|++++|+++. ++ .+..+++|++|++++|.++ .+|..+..++.|++| 
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L-   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL-   98 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEE-
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccc-
Confidence            3455566543  233 566789999999999999999994 54 4889999999999999997 667666667789999 


Q ss_pred             cccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc-hhhhcCCCCCEEeCcCCCCcccCC
Q 035878          434 DLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP-ASLSSMLSLVAVNLSYNNLEGPLP  493 (496)
Q Consensus       434 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~ip  493 (496)
                      ++++|+++. ++ .+.++++|++|++++|+++.... ..+..+++|+.|++++|+++...|
T Consensus        99 ~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          99 WISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            999999994 43 58889999999999999985432 578999999999999999876544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.2e-09  Score=88.72  Aligned_cols=85  Identities=26%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             hhhhCCCCCCEEeccCccCCcc--CChhccCCccccccccccCCcCCccchhhhcCCCCCCEEEcccCcCCcccc-----
Q 035878          397 KQIGELRDLRSLSLSQNNLNGT--IPFQIGNLVGLQDLLDLSYNSLTGEIPAQLEKLTSLQSMNLSHNNLSGEIP-----  469 (496)
Q Consensus       397 ~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~LL~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-----  469 (496)
                      ..+..+++|++|+|++|+++..  ++..+..+++|+.| +|++|+++..-+-.+.....|+.|++++|++++...     
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L-~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL-NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC-CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc-ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            3344566666666666666532  12334556666666 777777664322233344567777777777765433     


Q ss_pred             --hhhhcCCCCCEEe
Q 035878          470 --ASLSSMLSLVAVN  482 (496)
Q Consensus       470 --~~l~~l~~L~~L~  482 (496)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2245677777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9e-09  Score=87.22  Aligned_cols=81  Identities=28%  Similarity=0.306  Sum_probs=39.1

Q ss_pred             CCCCCCEEEccCCcCCCC--ChhhhhCCCCCCEEeccCccCCccCChhccCCccccccccccCCcCCccch-------hh
Q 035878          377 ALLNLDSLDLSMNRLSGP--IPKQIGELRDLRSLSLSQNNLNGTIPFQIGNLVGLQDLLDLSYNSLTGEIP-------AQ  447 (496)
Q Consensus       377 ~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~LL~Ls~N~l~~~~p-------~~  447 (496)
                      .++.|++|+|++|+++..  ++..+..+++|+.|++++|.++...+..+.....|+++ ++++|.+++...       ..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L-~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL-WLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSC-CCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcccccee-ecCCCCcCcCcccchhHHHHH
Confidence            344455555555554432  12334445555555555555553222222233345555 566665554322       22


Q ss_pred             hcCCCCCCEEE
Q 035878          448 LEKLTSLQSMN  458 (496)
Q Consensus       448 l~~l~~L~~L~  458 (496)
                      +..+++|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45667777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=2.6e-06  Score=71.93  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=37.9

Q ss_pred             cCCCCCCEEeccCC-cCccc----cchhhcCCCCCCEEEccCCcCCCC----ChhhhhCCCCCCEEeccCccCCc
Q 035878          352 GNLTELSTLSLNGN-DISGP----IPEEIGALLNLDSLDLSMNRLSGP----IPKQIGELRDLRSLSLSQNNLNG  417 (496)
Q Consensus       352 ~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~  417 (496)
                      .+.++|++|+|+++ .++..    +-..+...+.|++|++++|.+...    +...+...+.|++|++++|.+++
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            34577777777764 35422    223344556677777777766522    22334455666666666666653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=5.8e-06  Score=69.66  Aligned_cols=87  Identities=14%  Similarity=0.109  Sum_probs=44.0

Q ss_pred             cCCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEeccCCcCccc----cchhhcCCCCCCEEEccCCcCCCC----
Q 035878          327 IGSLSQLVVLDLSSNQLSGE----IPAQIGNLTELSTLSLNGNDISGP----IPEEIGALLNLDSLDLSMNRLSGP----  394 (496)
Q Consensus       327 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----  394 (496)
                      +...++|++|++++|.++..    +...+...+.|++|++++|.++..    +...+...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            44455566666666655422    222334455666666666666532    122334455566666666554321    


Q ss_pred             ---ChhhhhCCCCCCEEeccCc
Q 035878          395 ---IPKQIGELRDLRSLSLSQN  413 (496)
Q Consensus       395 ---~~~~l~~~~~L~~L~Ls~n  413 (496)
                         +...+...++|+.|+++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence               2233444566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=1.2e-05  Score=67.48  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=39.6

Q ss_pred             hhcCCCCCCEEeccC-CcCccc----cchhhcCCCCCCEEEccCCcCCCCC----hhhhhCCCCCCEEeccCccCC
Q 035878          350 QIGNLTELSTLSLNG-NDISGP----IPEEIGALLNLDSLDLSMNRLSGPI----PKQIGELRDLRSLSLSQNNLN  416 (496)
Q Consensus       350 ~l~~l~~L~~L~Ls~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~l~~~~~L~~L~Ls~n~l~  416 (496)
                      ...+.++|++|++++ +.++..    +...+...+.|++|++++|.+....    -..+...+.++.+++++|.+.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345667788888876 345432    2233445667777777777765432    223445566777777766665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.48  E-value=2.6e-05  Score=65.44  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             CCCCCCCEEEccC-CcCccc----cchhhcCCCCCCEEeccCCcCcccc----chhhcCCCCCCEEEccCCcCCC
Q 035878          328 GSLSQLVVLDLSS-NQLSGE----IPAQIGNLTELSTLSLNGNDISGPI----PEEIGALLNLDSLDLSMNRLSG  393 (496)
Q Consensus       328 ~~l~~L~~L~Ls~-n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~  393 (496)
                      .+.++|++|++++ +.++..    +...+...++|++|++++|.++...    ...+...+.++.+++++|.+..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            4456677777765 345422    2233445666777777777665332    2233445667777777766653